| Title |
Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data |
| Description |
In our work, we develop a polymer-physics-based hypothesis-driven model, noted as our stochastic folding model. This model predicts the conformation ensemble of a chromatin region of interest by using only the population-averaged chromatin accessibility data as input. We use stochastic folding model to construct the conformation ensemble for two chromatin regions: chr11:15Mb-25Mb and chr12:105Mb-115Mb. For each cell, the conformation ensemble is generated using the DNase-seq data |
| Organism |
Mus |
| Data Type |
Other Type of Genomic Data |
| Data Accessibility |
Open-access |
| BioProject |
PRJCA017011 |
| Release Date |
2023-05-16 |
| Submitter |
Luming MENG (menglum@scau.edu.cn) |
| Organization |
South China Agricultural University |
| Submission Date |
2023-05-16 |