OMIX

Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data

OMIX004067

1Summary
Title Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data
Description In our work, we develop a polymer-physics-based hypothesis-driven model, noted as our stochastic folding model. This model predicts the conformation ensemble of a chromatin region of interest by using only the population-averaged chromatin accessibility data as input. We use stochastic folding model to construct the conformation ensemble for two chromatin regions: chr11:15Mb-25Mb and chr12:105Mb-115Mb. For each cell, the conformation ensemble is generated using the DNase-seq data
Organism Mus
Data Type Other Type of Genomic Data
Data Accessibility Open-access
BioProject PRJCA017011
Release Date 2023-05-16
Submitter Luming MENG (menglum@scau.edu.cn)
Organization South China Agricultural University
Submission Date 2023-05-16
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OMIX004067-01 Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data 16 Other Type of Genomic Data 142.92 MB tar 0

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