Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data
| Title | Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data |
|---|---|
| Description | In our work, we develop a polymer-physics-based hypothesis-driven model, noted as our stochastic folding model. This model predicts the conformation ensemble of a chromatin region of interest by using only the population-averaged chromatin accessibility data as input. We use stochastic folding model to construct the conformation ensemble for two chromatin regions: chr11:15Mb-25Mb and chr12:105Mb-115Mb. For each cell, the conformation ensemble is generated using the DNase-seq data |
| Organism | Mus |
| Data Type | Other Type of Genomic Data |
| Data Accessibility | Open-access |
| BioProject | PRJCA017011 |
| Release Date | 2023-05-16 |
| Submitter | Luming MENG (menglum@scau.edu.cn) |
| Organization | South China Agricultural University |
| Submission Date | 2023-05-16 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX004067-01 | Simulated conformation ensembles for chromatin for eight developmental stages from HPSC cells based on DNase-seq data | 16 | Other Type of Genomic Data | 142.92 MB | tar | 0 |