OMIX004901

1Summary

Title	The spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development
Description	In this study, we profiled the dynamics of transcriptome and metabolome during the early stages of cotton fiber cell development using a combination of spatial transcriptomic, single-cell transcriptomic, and spatial metabolomic analyses. We identified the key genes (e.g., DOX2, KCS19.4, BEE3, and HOS3.7) and metabolites (e.g., L-aspartic acid, O-acetylserine, spermidine, and alpha-linolenic acid) that may regulate the initiation and early elongation of fiber cells. Finally, knockdown and gain-of-function analyses identified a novel gene, GhBEE3/Gh_A09G062900, crucial in cotton fiber initiation.
Organism	Gossypium hirsutum
Data Type	Metabolome Data by Mass Spectrometry (MS)
Data Accessibility	Open-access
BioProject	PRJCA019723
Release Date	2023-09-13
Submitter	xuwu sun (sunxuwussd@sina.com)
Organization	State Key Laboratory of Cotton Biology, State Key Laboratory of Crop Stress Adaptation and Improvement, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University
Submission Date	2023-09-12

2Files & Download

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File ID	File Title	Number/Samples	File Type	File Size	File Suffix	Download
OMIX004901-01	Integument_nucellus_min1_5d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	571.04 MB	zip	FTP HTTPs
OMIX004901-02	Integument_nucellus_5d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	586.96 MB	zip	FTP HTTPs
OMIX004901-03	Exocarp_mesocarp_3d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	523.21 MB	zip	FTP HTTPs
OMIX004901-04	Integument_nucellus_3d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	591.13 MB	zip	FTP HTTPs
OMIX004901-05	Integument_nucellus_1d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	618.75 MB	zip	FTP HTTPs
OMIX004901-06	Exocarp_mesocarp_min1d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	546.36 MB	zip	FTP HTTPs
OMIX004901-07	QC1_2_3_4_5_6_7_8_9_neg	9	Metabolome Data by Mass Spectrometry (MS)	798.65 MB	zip	FTP HTTPs
OMIX004901-08	Integument_nucellus_min1d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	587.54 MB	zip	FTP HTTPs
OMIX004901-09	Integument_nucellus_2d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	628.89 MB	zip	FTP HTTPs
OMIX004901-10	Exocarp_mesocarp_5d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	518.81 MB	zip	FTP HTTPs
OMIX004901-11	Exocarp_mesocarp_1d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	509.43 MB	zip	FTP HTTPs
OMIX004901-12	Integument_nucellus_5d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	633.38 MB	zip	FTP HTTPs
OMIX004901-13	Exocarp_mesocarp_2d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	505.93 MB	zip	FTP HTTPs
OMIX004901-14	Integument_nucellus_0d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	606.86 MB	zip	FTP HTTPs
OMIX004901-15	QC1_2_3_4_5_6_7_8_9_pos	9	Metabolome Data by Mass Spectrometry (MS)	828.02 MB	zip	FTP HTTPs
OMIX004901-16	Exocarp_mesocarp_min1_5d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	560.19 MB	zip	FTP HTTPs
OMIX004901-17	Exocarp_mesocarp_min1_5d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	492.11 MB	zip	FTP HTTPs
OMIX004901-18	Exocarp_mesocarp_5d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	520.8 MB	zip	FTP HTTPs
OMIX004901-19	Integument_nucellus_2d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	597.63 MB	zip	FTP HTTPs
OMIX004901-20	Exocarp_mesocarp_0d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	494.63 MB	zip	FTP HTTPs
OMIX004901-21	Integument_nucellus_1d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	593.05 MB	zip	FTP HTTPs
OMIX004901-22	Integument_nucellus_min1_5d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	612.08 MB	zip	FTP HTTPs
OMIX004901-23	Exocarp_mesocarp_min1d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	491.45 MB	zip	FTP HTTPs
OMIX004901-24	Exocarp_mesocarp_2d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	527.21 MB	zip	FTP HTTPs
OMIX004901-25	Exocarp_mesocarp_3d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	522.24 MB	zip	FTP HTTPs
OMIX004901-26	Integument_nucellus_0d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	593.59 MB	zip	FTP HTTPs
OMIX004901-27	Integument_nucellus_min1d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	591.77 MB	zip	FTP HTTPs
OMIX004901-28	Exocarp_mesocarp_0d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	529.69 MB	zip	FTP HTTPs
OMIX004901-29	Integument_nucellus_3d_1_2_3_4_5_6_neg	6	Metabolome Data by Mass Spectrometry (MS)	649.47 MB	zip	FTP HTTPs
OMIX004901-30	Exocarp_mesocarp_1d_1_2_3_4_5_6_pos	6	Metabolome Data by Mass Spectrometry (MS)	526.73 MB	zip	FTP HTTPs

3Relevant Publications

Paper Title	Journal Name	Publish Time	Accession	Citing Type
Spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development	Nature Communications	2025-01	OMIX004901 OMIX005015	Deposit

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