OMIX

The spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development

OMIX004901

1Summary
Title The spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development
Description In this study, we profiled the dynamics of transcriptome and metabolome during the early stages of cotton fiber cell development using a combination of spatial transcriptomic, single-cell transcriptomic, and spatial metabolomic analyses. We identified the key genes (e.g., DOX2, KCS19.4, BEE3, and HOS3.7) and metabolites (e.g., L-aspartic acid, O-acetylserine, spermidine, and alpha-linolenic acid) that may regulate the initiation and early elongation of fiber cells. Finally, knockdown and gain-of-function analyses identified a novel gene, GhBEE3/Gh_A09G062900, crucial in cotton fiber initiation.
Organism Gossypium hirsutum
Data Type Metabolome Data by Mass Spectrometry (MS)
Data Accessibility Open-access
BioProject PRJCA019723
Release Date 2023-09-13
Submitter xuwu sun (sunxuwussd@sina.com)
Organization State Key Laboratory of Cotton Biology, State Key Laboratory of Crop Stress Adaptation and Improvement, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University
Submission Date 2023-09-12
2Files & Download

HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).

File ID File Title Number/Samples File Type File Size File Suffix Download Times Download
OMIX004901-01 Integument_nucellus_min1_5d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 571.04 MB zip 0
OMIX004901-02 Integument_nucellus_5d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 586.96 MB zip 0
OMIX004901-03 Exocarp_mesocarp_3d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 523.21 MB zip 0
OMIX004901-04 Integument_nucellus_3d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 591.13 MB zip 0
OMIX004901-05 Integument_nucellus_1d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 618.75 MB zip 0
OMIX004901-06 Exocarp_mesocarp_min1d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 546.36 MB zip 0
OMIX004901-07 QC1_2_3_4_5_6_7_8_9_neg 9 Metabolome Data by Mass Spectrometry (MS) 798.65 MB zip 0
OMIX004901-08 Integument_nucellus_min1d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 587.54 MB zip 0
OMIX004901-09 Integument_nucellus_2d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 628.89 MB zip 0
OMIX004901-10 Exocarp_mesocarp_5d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 518.81 MB zip 0
OMIX004901-11 Exocarp_mesocarp_1d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 509.43 MB zip 0
OMIX004901-12 Integument_nucellus_5d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 633.38 MB zip 0
OMIX004901-13 Exocarp_mesocarp_2d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 505.93 MB zip 0
OMIX004901-14 Integument_nucellus_0d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 606.86 MB zip 0
OMIX004901-15 QC1_2_3_4_5_6_7_8_9_pos 9 Metabolome Data by Mass Spectrometry (MS) 828.02 MB zip 0
OMIX004901-16 Exocarp_mesocarp_min1_5d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 560.19 MB zip 0
OMIX004901-17 Exocarp_mesocarp_min1_5d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 492.11 MB zip 0
OMIX004901-18 Exocarp_mesocarp_5d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 520.8 MB zip 0
OMIX004901-19 Integument_nucellus_2d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 597.63 MB zip 0
OMIX004901-20 Exocarp_mesocarp_0d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 494.63 MB zip 0
OMIX004901-21 Integument_nucellus_1d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 593.05 MB zip 0
OMIX004901-22 Integument_nucellus_min1_5d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 612.08 MB zip 0
OMIX004901-23 Exocarp_mesocarp_min1d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 491.45 MB zip 0
OMIX004901-24 Exocarp_mesocarp_2d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 527.21 MB zip 0
OMIX004901-25 Exocarp_mesocarp_3d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 522.24 MB zip 0
OMIX004901-26 Integument_nucellus_0d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 593.59 MB zip 0
OMIX004901-27 Integument_nucellus_min1d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 591.77 MB zip 0
OMIX004901-28 Exocarp_mesocarp_0d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 529.69 MB zip 0
OMIX004901-29 Integument_nucellus_3d_1_2_3_4_5_6_neg 6 Metabolome Data by Mass Spectrometry (MS) 649.47 MB zip 0
OMIX004901-30 Exocarp_mesocarp_1d_1_2_3_4_5_6_pos 6 Metabolome Data by Mass Spectrometry (MS) 526.73 MB zip 0

View All Released Data of OMIX