RNA-sequencing of RelQ cells. (RNA-seq mapping to Gene) related to OMIX005254
| Title | RNA-sequencing of RelQ cells. (RNA-seq mapping to Gene) related to OMIX005254 |
|---|---|
| Description | mRNA Expression data for all genes with ordered locus names. RelQ cell encodes the gene for (p)ppGpp synthetase from Bacillus subtilis, whose expression is under the regulation of a gene expression inducer Isopropyl-β-D(-)-thiogalactopyranoside (IPTG). RNA-seq is performed for cells treated under the following conditions: The total RNA of RelQ cells are obtained after 6 h or 24 h with or without 1 mM IPTG addition. Changes in transcript abundance of all genes are represented as a log2 (RelQ-ox/RelQ)-fold change scale, based on transcripts per million (TPM) normalization. |
| Organism | Synechococcus elongatus PCC 7942 = FACHB-805 |
| Data Type | Expression Profiling by NGS |
| Data Accessibility | Open-access |
| BioProject | PRJCA021115 |
| Release Date | 2023-11-17 |
| Submitter | Ryota Hidese (hidese@people.kobe-u.ac.jp) |
| Organization | Kobe university |
| Submission Date | 2023-11-07 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX005212-02 | Summary of mRNA expression dynamics in the RelQ cells.csv | 2695 | Expression Profiling by NGS | 455.7 KB | csv | 0 | |
| OMIX005212-03 | 0h1_S1_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.3 KB | xlsx | 0 | |
| OMIX005212-04 | 0h3_S2_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.8 KB | xlsx | 0 | |
| OMIX005212-05 | minus6h1_S3_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.7 KB | xlsx | 0 | |
| OMIX005212-06 | minus6h3_S1_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.4 KB | xlsx | 0 | |
| OMIX005212-07 | plus6h3_S4_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.4 KB | xlsx | 0 | |
| OMIX005212-08 | plus6h1_S3_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.5 KB | xlsx | 0 | |
| OMIX005212-09 | minus24h3_S2_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.6 KB | xlsx | 0 | |
| OMIX005212-10 | plus24h1_S5_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.5 KB | xlsx | 0 | |
| OMIX005212-11 | plus24h3_S6_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 191.7 KB | xlsx | 0 | |
| OMIX005212-12 | minus24h1_S5_L001_R1_001 (paired) trimmed (paired) (GE) | 2695 | Expression Profiling by NGS | 192.0 KB | xlsx | 0 |