OMIX006457

1Summary
Title CMAISE-V1.0_RNA-seq_expressionMatrix
Description Using the same StringTie Quantification Parameters for different batches; there are two batches denoted as LC and singlorn with sample size of 1089+380; Cite the reference if you use the data: PMID: 36544199; PMID: 37792053
Organism Homo sapiens
Data Type Non-coding RNA Profiling
Data Accessibility Controlled-access
BioProject PRJCA006118
Release Date 2024-12-19
Submitter Zhongheng Zhang (zh_zhang1984@zju.edu.cn)
Organization Zhejiang University
Submission Date 2024-05-19
2Files & Download

HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).

File ID File Title Number/Samples File Type File Size File Suffix Download
OMIX006457-01 LCgenes_fpkm1089 1089 Non-coding RNA Profiling 557.28 MB txt Controlled
OMIX006457-02 LC_COUNT1089 1089 Non-coding RNA Profiling 175.2 MB csv Controlled
OMIX006457-03 singlornFPKM 380 Non-coding RNA Profiling 857.45 MB txt Controlled
OMIX006457-04 stringTieParameter 1 Non-coding RNA Profiling 10.81 KB docx Controlled
OMIX006457-05 singlornCount 380 Non-coding RNA Profiling 228.31 MB csv Controlled
OMIX006457-06 Readmefile 1 Non-coding RNA Profiling 221 B txt Controlled
OMIX006457-07 singlorn_GeneCount 380 Non-coding RNA Profiling 61.76 MB csv Controlled
OMIX006457-08 singlorn_geneFPKM 380 Non-coding RNA Profiling 119.58 MB txt Controlled
3Relevant Publications
Paper Title Journal Name Publish Time Accession Citing Type
CMAISE: Establishing the Longitudinal Multi‐Omics Cohort for Sepsis Precision Medicine Med Research 2026-02 OMIX012566 OMIX012322 OMIX011182 OMIX011033 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005655 OMIX005608 OMIX005606 OMIX005600 OMIX538 Deposit
Single-cell transcriptome profiling reveals heterogeneous neutrophils with prognostic values in sepsis iScience 2022-11 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011182 OMIX011033 OMIX007493 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX538 OMIX004969 OMIX004968 OMIX004967 OMIX004883 Deposit
Identifying septic shock subgroups to tailor fluid strategies through multi-omics integration Nature Communications 2024-10 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011182 OMIX011033 OMIX007493 OMIX006496 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX004969 OMIX004968 OMIX004967 OMIX538 OMIX004883 OMIX006238 OMIX006457 Deposit
Deriving consensus sepsis clusters via goal-directed subgroup identification in multi-omics study Nature Communications 2025-11 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX006457 OMIX006238 Deposit
Multicenter validation and updating of the ELDER-ICU model for severity assessment in elderly critical illness NPJ Digital Medicine 2026-04 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011182 OMIX011033 OMIX007493 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX004969 OMIX004968 OMIX004967 OMIX004883 OMIX538 Deposit
The GSA Family in 2025: A Broadened Sharing Platform for Multi-omics and Multimodal Data Genomics, Proteomics & Bioinformatics 2025-09 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011033 OMIX007493 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX004969 OMIX004968 OMIX004967 OMIX538 OMIX004883 Deposit
Gene signature for the prediction of the trajectories of sepsis-induced acute kidney injury Critical Care 2022-12 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011182 OMIX011033 OMIX007493 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX538 OMIX004969 OMIX004968 OMIX004967 OMIX004883 Deposit
Progress of the Chinese Multi-omics Advances in Sepsis (CMAISE) database: a review Journal of Emergency and Critical Care Medicine 2025-12 OMIX005600 OMIX006457 OMIX005601 OMIX005608 OMIX006238 OMIX005606 Deposit
Integrated Single Cell and Bulk RNA-Seq Analysis Revealed Immunomodulatory Effects of Ulinastatin in Sepsis: A Multicenter Cohort Study Frontiers in Immunology 2022-05 OMIX018391 OMIX016638 OMIX015646 OMIX013994 OMIX012566 OMIX012322 OMIX012112 OMIX011182 OMIX011033 OMIX007493 OMIX006496 OMIX006457 OMIX006238 OMIX005817 OMIX005806 OMIX005768 OMIX005655 OMIX005608 OMIX005606 OMIX005602 OMIX005601 OMIX005600 OMIX538 OMIX004969 OMIX004968 OMIX004967 OMIX004883 Deposit
Correction: Integrated single cell and bulk RNA-Seq analysis revealed immunomodulatory effects of Ulinastatin in sepsis: a multicenter cohort study Frontiers in Immunology 2026-02 OMIX018391 OMIX016638 OMIX015646 OMIX538 Deposit

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