| Title | Resolving cell-cell interaction networks and their molecular logic in complex tissues |
|---|---|
| Description | CCI-seq is a high-throughput sequencing method designed to map complex cell-cell interaction (CCI) networks at scale. By combining cell clump combinatorial indexing with single-cell RNA sequencing, it captures physical cellular proximity while maintaining deep transcriptome coverage. Unlike traditional methods, CCI-seq provides an unbiased look at how spatial organization influences molecular states across diverse biological contexts. |
| Organism | mixed sample |
| Data Type | Expression Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA034558 |
| Release Date | 2026-04-09 |
| Submitter | Qiangfeng Zhang (qczhang@mail.tsinghua.edu.cn) |
| Organization | Tsinghua University |
| Submission Date | 2026-04-03 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX016046-01 | CRC2_T_2_cellid | 1 | Expression Profiling | 32.23 GB | txt | |
| OMIX016046-02 | CRC3_T_cellid | 1 | Expression Profiling | 21.38 GB | txt | |
| OMIX016046-03 | CRC1_T_cellid | 1 | Expression Profiling | 16.55 GB | txt | |
| OMIX016046-04 | 3T3-HEK293T-mix_rna | 1 | Expression Profiling | 78.86 MB | h5ad | |
| OMIX016046-05 | CRC5_T_cellid | 1 | Expression Profiling | 32.42 GB | txt | |
| OMIX016046-06 | kidney_rna | 3 | Expression Profiling | 111.41 MB | h5ad | |
| OMIX016046-07 | CRC4_T_cellid | 1 | Expression Profiling | 23.23 GB | txt | |
| OMIX016046-08 | Apc_KO_Intestine2_rep1_cellid | 1 | Expression Profiling | 25.98 GB | txt | |
| OMIX016046-09 | WT_Intestine2_Apc_KO_Intestine1_cellid | 1 | Expression Profiling | 5.27 GB | txt | |
| OMIX016046-10 | 3T3-HEK293T-mix_cellid | 1 | Expression Profiling | 14.14 GB | txt | |
| OMIX016046-11 | CRC5_N_cellid | 1 | Expression Profiling | 24.65 GB | txt | |
| OMIX016046-12 | kidney_exp3_cellid | 1 | Expression Profiling | 26.49 GB | txt | |
| OMIX016046-13 | Apc_KO_Intestine3_cellid | 1 | Expression Profiling | 24.23 GB | txt | |
| OMIX016046-14 | CRC_rna | 9 | Expression Profiling | 434.49 MB | h5ad | |
| OMIX016046-15 | CRC2_N_cellid | 1 | Expression Profiling | 19.66 GB | txt | |
| OMIX016046-16 | kidney_exp2_cellid | 1 | Expression Profiling | 18.01 GB | txt | |
| OMIX016046-17 | kidney_exp1_cellid | 1 | Expression Profiling | 16.04 GB | txt | |
| OMIX016046-18 | Intestine_rna | 7 | Expression Profiling | 342.42 MB | h5ad | |
| OMIX016046-19 | WT_Intestine1_cellid | 1 | Expression Profiling | 3.25 GB | txt | |
| OMIX016046-20 | WT_Intestine3_cellid | 1 | Expression Profiling | 8.62 GB | txt | |
| OMIX016046-21 | CRC2_T_1_cellid | 1 | Expression Profiling | 23.28 GB | txt | |
| OMIX016046-22 | CRC4_N_cellid | 1 | Expression Profiling | 18.1 GB | txt | |
| OMIX016046-23 | Apc_KO_Intestine2_rep2_cellid | 2 | Expression Profiling | 30.05 GB | txt |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
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