Tumor omics data (Breast cancer)
| Title | Tumor omics data (Breast cancer) |
|---|---|
| Description | Multi-Omics Breast Cancer Database , a simple and easily accessible repository that integrates genomic, transcriptomic, epigenomic, clinical data of different subtypes of breast cancer. This database allows users to retrieve simple nucleotide variation (SNV), gene expression, microRNA expression, DNA methylation data by various search fashions. The rawdata of this dataset comes from TCGA database.The processed data sets are as follows:1. Gene expression matrix of 1222 patients, including counts, fpkm and UQ.2. 27K methylation chip data of 342 patients and 450k methylation chip data of 892 patients.3. The expression data of miRNA and mature RNA of 1207 patients.4. Meta information of the above data.5. Clinical information of 1098 patients.6. SNV information of 1009 patients. |
| Organism | Homo sapiens |
| Data Type | - |
| Data Accessibility | Open-access |
| BioProject | PRJCA005782 |
| Release Date | 2021-07-08 |
| Submitter | Xiangdong FANG (fangxd@big.ac.cn) |
| Organization | Beijing Institute of Genomics, Chinese Academy of Sciences |
| Submission Date | 2021-07-08 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX447-60-01 | 27K.txt | 342 | DNA Methylation | 59.0 MB | txt | 20 | |
| OMIX447-60-02 | 450K.txt | 892 | DNA Methylation | 2.7 GB | txt | 19 | |
| OMIX447-01-03 | Clinical_2.txt | 1009 | Clinical information | 86.9 KB | txt | 18 | |
| OMIX447-20-04 | Gene_expression_counts.txt | 1222 | Transcriptomic | 133.6 MB | txt | 25 | |
| OMIX447-20-05 | Gene_expression_FPKM.txt | 1222 | Transcriptomic | 223.8 MB | txt | 19 | |
| OMIX447-20-06 | Gene_expression_UQ.txt | 1222 | Transcriptomic | 275.3 MB | txt | 20 | |
| OMIX447-99-07 | meta_27K.txt | 342 | Genotype | 1.0 MB | txt | 15 | |
| OMIX447-99-08 | meta_450K.txt | 892 | Genotype | 19.2 MB | txt | 19 | |
| OMIX447-99-09 | meta_gene_exp.txt | 1222 | Genotype | 986.6 KB | txt | 20 | |
| OMIX447-99-10 | meta_mir_exp.txt | 1207 | Genotype | 71.5 KB | txt | 13 | |
| OMIX447-99-11 | meta_mir_exp_iso.txt | 1207 | Genotype | 117.7 KB | txt | 14 | |
| OMIX447-99-12 | meta_SNV_new.txt | 1009 | Genotype | 15.3 MB | txt | 14 | |
| OMIX447-20-13 | miRNA_expression_iso_up.txt | 1207 | Transcriptomic | 5.9 MB | txt | 23 | |
| OMIX447-20-14 | miRNA_expression_miquan.txt | 1207 | Transcriptomic | 5.0 MB | txt | 14 | |
| OMIX447-99-15 | SNV_matrix.txt | 1009 | others | 254.3 MB | txt | 18 |