DNA Strand-Displacement Timer Circuits.

Joshua Fern, Dominic Scalise, Angelo Cangialosi, Dylan Howie, Leo Potters, Rebecca Schulman
Author Information
  1. Joshua Fern: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.
  2. Dominic Scalise: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.
  3. Angelo Cangialosi: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.
  4. Dylan Howie: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.
  5. Leo Potters: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.
  6. Rebecca Schulman: Chemical and Biomolecular Engineering, and ‡Computer Science, Johns Hopkins University , Baltimore, Maryland 21218, United States.

Abstract

Chemical circuits can coordinate elaborate sequences of events in cells and tissues, from the self-assembly of biological complexes to the sequence of embryonic development. However, autonomously directing the timing of events in synthetic systems using chemical signals remains challenging. Here we demonstrate that a simple synthetic DNA strand-displacement circuit can release target sequences of DNA into solution at a constant rate after a tunable delay that can range from hours to days. The rates of DNA release can be tuned to the order of 1-100 nM per day. Multiple timer circuits can release different DNA strands at different rates and times in the same solution. This circuit can thus facilitate precise coordination of chemical events in vitro without external stimulation.

MeSH Term

DNA
Kinetics
Nucleic Acid Conformation
Time Factors

Chemicals

DNA

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