Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.

Rie Ouchi, Shodai Togo, Masaki Kimura, Tadahiro Shinozawa, Masaru Koido, Hiroyuki Koike, Wendy Thompson, Rebekah A Karns, Christopher N Mayhew, Patrick S McGrath, Heather A McCauley, Ran-Ran Zhang, Kyle Lewis, Shoyo Hakozaki, Autumn Ferguson, Norikazu Saiki, Yosuke Yoneyama, Ichiro Takeuchi, Yo Mabuchi, Chihiro Akazawa, Hiroshi Y Yoshikawa, James M Wells, Takanori Takebe
Author Information
  1. Rie Ouchi: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  2. Shodai Togo: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA; Department of Chemistry, Saitama University, Shimo-okubo 255, Sakura-ku, Saitama, Saitama 338-8570, Japan.
  3. Masaki Kimura: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  4. Tadahiro Shinozawa: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  5. Masaru Koido: Department of Regenerative Medicine, Yokohama City University Graduate School of Medicine, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa 236-0004, Japan.
  6. Hiroyuki Koike: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  7. Wendy Thompson: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  8. Rebekah A Karns: Bioinformatics Core, Cincinnati Children's Hospital Medical Center, University of Cincinnati, 3333 Burnet Avenue, Cincinnati, OH 45229- 3039, USA.
  9. Christopher N Mayhew: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  10. Patrick S McGrath: Gates Center for Regenerative Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
  11. Heather A McCauley: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  12. Ran-Ran Zhang: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  13. Kyle Lewis: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  14. Shoyo Hakozaki: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  15. Autumn Ferguson: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  16. Norikazu Saiki: Department of Regenerative Medicine, Yokohama City University Graduate School of Medicine, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa 236-0004, Japan.
  17. Yosuke Yoneyama: Institute of Research, Division of Advanced Research, Tokyo Medical and Dental University (TMDU), 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.
  18. Ichiro Takeuchi: Division of Gastroenterology, National Center for Child Health and Development, 2-10-1 Okura, Setagaya-ku, Tokyo, 157-8535, Japan.
  19. Yo Mabuchi: Department of Biochemistry and Biophysics, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University (TMDU), 1-5-45 Yushima, Bunkyo-ku, Tokyo, 113-8510, Japan.
  20. Chihiro Akazawa: Department of Biochemistry and Biophysics, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University (TMDU), 1-5-45 Yushima, Bunkyo-ku, Tokyo, 113-8510, Japan.
  21. Hiroshi Y Yoshikawa: Department of Chemistry, Saitama University, Shimo-okubo 255, Sakura-ku, Saitama, Saitama 338-8570, Japan.
  22. James M Wells: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA; The Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA; Department of Pediatrics, University of Cincinnati College of Medicine, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA.
  23. Takanori Takebe: Division of Gastroenterology, Hepatology and Nutrition & Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA; Department of Regenerative Medicine, Yokohama City University Graduate School of Medicine, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa 236-0004, Japan; Institute of Research, Division of Advanced Research, Tokyo Medical and Dental University (TMDU), 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan; The Center for Stem Cell and Organoid Medicine (CuSTOM), Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA; Department of Pediatrics, University of Cincinnati College of Medicine, 3333 Burnet Avenue, Cincinnati, OH 45229-3039, USA. Electronic address: takanori.takebe@cchmc.org.

Abstract

Human organoid systems recapitulate in vivo organ architecture yet fail to capture complex pathologies such as inflammation and fibrosis. Here, using 11 different healthy and diseased pluripotent stem cell lines, we developed a reproducible method to derive multi-cellular human liver organoids composed of hepatocyte-, stellate-, and Kupffer-like cells that exhibit transcriptomic resemblance to in vivo-derived tissues. Under free fatty acid treatment, organoids, but not reaggregated cocultured spheroids, recapitulated key features of steatohepatitis, including steatosis, inflammation, and fibrosis phenotypes in a successive manner. Interestingly, an organoid-level biophysical readout with atomic force microscopy demonstrated that organoid stiffening reflects the fibrosis severity. Furthermore, organoids from patients with genetic dysfunction of lysosomal acid lipase phenocopied severe steatohepatitis, rescued by FXR agonism-mediated reactive oxygen species suppression. The presented key methodology and preliminary results offer a new approach for studying a personalized basis for inflammation and fibrosis in humans, thus facilitating the discovery of effective treatments.

Keywords

References

  1. Blood. 2000 Jan 15;95(2):470-7 [PMID: 10627451]
  2. Genome Res. 2002 Jun;12(6):996-1006 [PMID: 12045153]
  3. J Clin Pharmacol. 2004 Nov;44(11):1273-81 [PMID: 15496645]
  4. Gastroenterology. 2004 Dec;127(6):1704-13 [PMID: 15578508]
  5. Mitochondrion. 2006 Feb;6(1):1-28 [PMID: 16406828]
  6. Arterioscler Thromb Vasc Biol. 2008 Jan;28(1):27-38 [PMID: 17690317]
  7. Dev Biol. 2007 Dec 1;312(1):157-70 [PMID: 18028902]
  8. Dig Liver Dis. 2008 May;40(5):371-8 [PMID: 18083083]
  9. Bioinformatics. 2009 May 1;25(9):1105-11 [PMID: 19289445]
  10. Annu Rev Cell Dev Biol. 2009;25:221-51 [PMID: 19575677]
  11. Nat Biotechnol. 2010 May;28(5):511-5 [PMID: 20436464]
  12. Nat Rev Clin Oncol. 2010 Aug;7(8):doi:10.1038/nrclinonc.2010.9-c1; author reply doi:10:1038/nrclin [PMID: 20700952]
  13. J Exp Med. 2010 Dec 20;207(13):2817-30 [PMID: 21098095]
  14. Nature. 2011 Feb 3;470(7332):105-9 [PMID: 21151107]
  15. Nat Methods. 2011 May;8(5):409-12 [PMID: 21460823]
  16. Cell. 2011 Nov 11;147(4):868-80 [PMID: 22078883]
  17. Cell Metab. 2012 Mar 7;15(3):279-91 [PMID: 22405066]
  18. Nature. 2012 Sep 6;489(7414):57-74 [PMID: 22955616]
  19. Nature. 2013 Feb 14;494(7436):247-50 [PMID: 23354049]
  20. Cell Stem Cell. 2013 Apr 4;12(4):393-4 [PMID: 23561441]
  21. PLoS One. 2013;8(4):e59243 [PMID: 23573196]
  22. Stem Cells. 2013 Sep;31(9):1966-79 [PMID: 23847135]
  23. J Gastroenterol Hepatol. 2013 Aug;28 Suppl 1:112-5 [PMID: 23855305]
  24. Am J Pathol. 2014 Feb;184(2):397-408 [PMID: 24287405]
  25. J Res Med Sci. 2013 Jul;18(7):573-9 [PMID: 24516489]
  26. Atherosclerosis. 2014 Jul;235(1):21-30 [PMID: 24792990]
  27. Oncogene. 2015 Apr 9;34(15):1938-48 [PMID: 24882582]
  28. Science. 2014 Jul 18;345(6194):1247125 [PMID: 25035496]
  29. Magnes Res. 2014 Apr-Jun;27(2):48-56 [PMID: 25204013]
  30. Nature. 2014 Dec 18;516(7531):400-4 [PMID: 25363776]
  31. Lancet. 2015 Mar 14;385(9972):956-65 [PMID: 25468160]
  32. Cell. 2015 Jan 15;160(1-2):299-312 [PMID: 25533785]
  33. Stem Cell Reports. 2015 Feb 10;4(2):269-81 [PMID: 25680478]
  34. Gut. 2016 Aug;65(8):1359-68 [PMID: 25873639]
  35. Curr Biol. 2015 Jun 1;25(11):R470-81 [PMID: 26035793]
  36. Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32 [PMID: 26527727]
  37. Biochem Biophys Res Commun. 2016 May 27;474(2):351-356 [PMID: 27109477]
  38. Drugs Today (Barc). 2016 May;52(5):287-93 [PMID: 27376161]
  39. Exp Biol Med (Maywood). 2016 Sep;241(15):1684-98 [PMID: 27385595]
  40. Mol Brain. 2016 Sep 19;9(1):85 [PMID: 27642008]
  41. PLoS One. 2016 Dec 9;11(12):e0168266 [PMID: 27936185]
  42. Toxicol In Vitro. 2017 Mar;39:93-103 [PMID: 27939613]
  43. Nature. 2017 Jan 12;541(7636):182-187 [PMID: 28052057]
  44. Stem Cell Reports. 2017 Feb 14;8(2):334-345 [PMID: 28111278]
  45. Nature. 2017 Mar 2;543(7643):136 [PMID: 28117442]
  46. Nature. 2017 Feb 16;542(7641):352-356 [PMID: 28166538]
  47. Development. 2017 Mar 15;144(6):1056-1064 [PMID: 28275009]
  48. Stem Cell Reports. 2017 Apr 11;8(4):822-830 [PMID: 28344000]
  49. Nutrition. 2017 Jun;38:54-60 [PMID: 28526383]
  50. Nature. 2017 Jun 22;546(7659):533-538 [PMID: 28614297]
  51. Lancet. 1988 May 7;1(8593):1021-4 [PMID: 2896870]
  52. Sci Rep. 2017 Oct 2;7(1):12502 [PMID: 28970500]
  53. Nat Med. 2017 Dec;23(12):1424-1435 [PMID: 29131160]
  54. Cell Rep. 2017 Dec 5;21(10):2661-2670 [PMID: 29212014]
  55. Cell Stem Cell. 2018 Jul 05;23(1):101-113.e7 [PMID: 30049452]
  56. Nat Commun. 2018 Oct 22;9(1):4383 [PMID: 30348985]
  57. Micromachines (Basel). 2016 Dec 05;7(12):null [PMID: 30404392]
  58. Hepatobiliary Surg Nutr. 2018 Oct;7(5):372-381 [PMID: 30498712]

Grants

  1. P01 HD093363/NICHD NIH HHS
  2. P30 DK078392/NIDDK NIH HHS
  3. UG3 DK119982/NIDDK NIH HHS

MeSH Term

Cells, Cultured
Fatty Liver
Humans
Male
Models, Biological
Organoids
Pluripotent Stem Cells