Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs.

Stefanie Lindner, Christian Steinebach, Hannes Kehm, Martin Mangold, Michael Gütschow, Jan Krönke
Author Information
  1. Stefanie Lindner: Department of Internal Medicine III, University Hospital Ulm.
  2. Christian Steinebach: Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn.
  3. Hannes Kehm: Department of Internal Medicine III, University Hospital Ulm.
  4. Martin Mangold: Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn.
  5. Michael Gütschow: Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn.
  6. Jan Krönke: Department of Internal Medicine III, University Hospital Ulm; jan.kroenke@uni-ulm.de.

Abstract

The immunomodulatory drugs (IMiDs) thalidomide and its analogs, lenalidomide and pomalidomide, all FDA approved drugs for the treatment of multiple myeloma, induce ubiquitination and degradation of the lymphoid transcription factors Ikaros (IKZF1) and Aiolos (IKZF3) via the cereblon (CRBN) E3 ubiquitin ligase for proteasomal degradation. IMiDs have recently been utilized for the generation of bifunctional proteolysis targeting chimeras (PROTACs) to target other proteins for ubiquitination and proteasomal degradation by the CRBN E3 ligase. We designed and synthesized pomalidomide-based homobifunctional PROTACs and analyzed their ability to induce self-directed ubiquitination and degradation of CRBN. Here, CRBN serves as both, the E3 ubiquitin ligase and the target at the same time. The homo-PROTAC compound 8 degrades CRBN with a high potency with only minimal remaining effects on IKZF1 and IKZF3. CRBN inactivation by compound 8 had no effect on cell viability and proliferation of different multiple myeloma cell lines. This homo-PROTAC abrogates the effects of IMiDs in multiple myeloma cells. Therefore, our homodimeric pomalidomide-based compounds may help to identify CRBN's endogenous substrates and physiological functions and investigate the molecular mechanism of IMiDs.

MeSH Term

Adaptor Proteins, Signal Transducing
Carbon-13 Magnetic Resonance Spectroscopy
Cell Line, Tumor
Cell Survival
Humans
Leupeptins
Multiple Myeloma
Protein Multimerization
Proteolysis
Proton Magnetic Resonance Spectroscopy
Thalidomide
Ubiquitin-Protein Ligases

Chemicals

Adaptor Proteins, Signal Transducing
CRBN protein, human
Leupeptins
Thalidomide
pomalidomide
Ubiquitin-Protein Ligases
benzyloxycarbonylleucyl-leucyl-leucine aldehyde