A modified vaccinia Ankara vector-based vaccine protects macaques from SARS-CoV-2 infection, immune pathology, and dysfunction in the lungs.

Nanda Kishore Routhu, Narayanaiah Cheedarla, Sailaja Gangadhara, Venkata Satish Bollimpelli, Arun K Boddapati, Ayalnesh Shiferaw, Sheikh Abdul Rahman, Anusmita Sahoo, Venkata Viswanadh Edara, Lilin Lai, Katharine Floyd, Shelly Wang, Stephanie Fischinger, Caroline Atyeo, Sally A Shin, Sanjeev Gumber, Shannon Kirejczyk, Joyce Cohen, Sherrie M Jean, Jennifer S Wood, Fawn Connor-Stroud, Rachelle L Stammen, Amit A Upadhyay, Kathryn Pellegrini, David Montefiori, Pei-Yong Shi, Vineet D Menachery, Galit Alter, Thomas H Vanderford, Steven E Bosinger, Mehul S Suthar, Rama Rao Amara
Author Information
  1. Nanda Kishore Routhu: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  2. Narayanaiah Cheedarla: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  3. Sailaja Gangadhara: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  4. Venkata Satish Bollimpelli: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  5. Arun K Boddapati: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pathology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  6. Ayalnesh Shiferaw: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  7. Sheikh Abdul Rahman: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  8. Anusmita Sahoo: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  9. Venkata Viswanadh Edara: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pediatrics, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.
  10. Lilin Lai: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pediatrics, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.
  11. Katharine Floyd: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pediatrics, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.
  12. Shelly Wang: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  13. Stephanie Fischinger: Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
  14. Caroline Atyeo: Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
  15. Sally A Shin: Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
  16. Sanjeev Gumber: Division of Pathology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  17. Shannon Kirejczyk: Division of Pathology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  18. Joyce Cohen: Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
  19. Sherrie M Jean: Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
  20. Jennifer S Wood: Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
  21. Fawn Connor-Stroud: Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
  22. Rachelle L Stammen: Division of Animal Resources, Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
  23. Amit A Upadhyay: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  24. Kathryn Pellegrini: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  25. David Montefiori: Department of Surgery, Duke University School of Medicine, Durham, NC 27710, USA.
  26. Pei-Yong Shi: Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX, USA.
  27. Vineet D Menachery: Department of Microbiology and Immunology, The University of Texas Medical Branch, Galveston, TX, USA.
  28. Galit Alter: Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
  29. Thomas H Vanderford: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA.
  30. Steven E Bosinger: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pathology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA.
  31. Mehul S Suthar: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Pediatrics, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.
  32. Rama Rao Amara: Emory Vaccine Center, Division of Microbiology and Immunology, Yerkes National Primate Research Center, Emory University, Atlanta, GA 30329, USA; Department of Microbiology and Immunology, Emory School of Medicine, Emory University, Atlanta, GA 30322, USA. Electronic address: ramara@emory.edu.

Abstract

A combination of vaccination approaches will likely be necessary to fully control the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic. Here, we show that modified vaccinia Ankara (MVA) vectors expressing membrane-anchored pre-fusion stabilized spike (MVA/S) but not secreted S1 induced strong neutralizing antibody responses against SARS-CoV-2 in mice. In macaques, the MVA/S vaccination induced strong neutralizing antibodies and CD8 T cell responses, and conferred protection from SARS-CoV-2 infection and virus replication in the lungs as early as day 2 following intranasal and intratracheal challenge. Single-cell RNA sequencing analysis of lung cells on day 4 after infection revealed that MVA/S vaccination also protected macaques from infection-induced inflammation and B cell abnormalities and lowered induction of interferon-stimulated genes. These results demonstrate that MVA/S vaccination induces neutralizing antibodies and CD8 T cells in the blood and lungs and is a potential vaccine candidate for SARS-CoV-2.

Keywords

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Grants

  1. HHSN272201400008C/NIAID NIH HHS
  2. P51 OD011132/NIH HHS
  3. R01 AI148378/NIAID NIH HHS
  4. S10 OD026799/NIH HHS

MeSH Term

Animals
Antibodies, Neutralizing
Antibodies, Viral
Antigens, Viral
COVID-19
COVID-19 Vaccines
Disease Models, Animal
Gene Expression
Gene Order
Genetic Vectors
Immunophenotyping
Lung
Macaca
Macrophages, Alveolar
Mice
SARS-CoV-2
Spike Glycoprotein, Coronavirus
T-Lymphocyte Subsets
Vaccination
Vaccines, DNA
Vaccinia virus

Chemicals

Antibodies, Neutralizing
Antibodies, Viral
Antigens, Viral
COVID-19 Vaccines
Spike Glycoprotein, Coronavirus
Vaccines, DNA
spike protein, SARS-CoV-2