Immune signatures underlying post-acute COVID-19 lung sequelae.

I S Cheon, C Li, Y M Son, N P Goplen, Y Wu, T Cassmann, Z Wang, X Wei, J Tang, Y Li, H Marlow, S Hughes, L Hammel, T M Cox, E Goddery, K Ayasoufi, D Weiskopf, J Boonyaratanakornkit, H Dong, H Li, R Chakraborty, A J Johnson, E Edell, J J Taylor, M H Kaplan, A Sette, B J Bartholmai, R Kern, R Vassallo, J Sun
Author Information
  1. I S Cheon: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  2. C Li: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  3. Y M Son: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  4. N P Goplen: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  5. Y Wu: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  6. T Cassmann: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  7. Z Wang: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  8. X Wei: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  9. J Tang: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  10. Y Li: Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN 55905, USA.
  11. H Marlow: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  12. S Hughes: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  13. L Hammel: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  14. T M Cox: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  15. E Goddery: Department of Immunology, Mayo Clinic, Rochester, MN 55905, USA.
  16. K Ayasoufi: Department of Immunology, Mayo Clinic, Rochester, MN 55905, USA.
  17. D Weiskopf: Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA. ORCID
  18. J Boonyaratanakornkit: Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. ORCID
  19. H Dong: Department of Immunology, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  20. H Li: Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  21. R Chakraborty: Department of Immunology, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  22. A J Johnson: Department of Immunology, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  23. E Edell: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
  24. J J Taylor: Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. ORCID
  25. M H Kaplan: Department of Microbiology and Immunology, Indiana University of School of Medicine, Indianapolis, IN 46202, USA. ORCID
  26. A Sette: Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA. ORCID
  27. B J Bartholmai: Department of Radiology, Mayo Clinic, Rochester, MN 5590, USA. ORCID
  28. R Kern: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  29. R Vassallo: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID
  30. J Sun: Division of Pulmonary and Critical Medicine, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA. ORCID

Abstract

Severe coronavirus disease 2019 (COVID-19) pneumonia survivors often exhibit long-term pulmonary sequelae, but the underlying mechanisms or associated local and systemic immune correlates are not known. Here, we have performed high-dimensional characterization of the pathophysiological and immune traits of aged COVID-19 convalescents, and correlated the local and systemic immune profiles with pulmonary function and lung imaging. We found that chronic lung impairment was accompanied by persistent respiratory immune alterations. We showed that functional severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)–specific memory T and B cells were enriched at the site of infection compared with those of blood. Detailed evaluation of the lung immune compartment revealed that dysregulated respiratory CD8 T cell responses were associated with the impaired lung function after acute COVID-19. Single-cell transcriptomic analysis identified the potential pathogenic subsets of respiratory CD8 T cells contributing to persistent tissue conditions after COVID-19. Our results have revealed pathophysiological and immune traits that may support the development of lung sequelae after SARS-CoV-2 pneumonia in older individuals, with implications for the treatment of chronic COVID-19 symptoms.

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Grants

  1. U01 AI131566/NIAID NIH HHS
  2. R01 NS103212/NINDS NIH HHS
  3. R01 AI147394/NIAID NIH HHS
  4. RF1 NS122174/NINDS NIH HHS
  5. R01 AI057459/NIAID NIH HHS
  6. R01 AG047156/NIA NIH HHS
  7. R01 AG069264/NIA NIH HHS

MeSH Term

B-Lymphocytes
CD8-Positive T-Lymphocytes
COVID-19
Female
Humans
Immunologic Memory
Lung
Male
Middle Aged
SARS-CoV-2