Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023.

CNCB-NGDC Members and Partners
Author Information

Abstract

The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support global academic and industrial communities. With the explosive accumulation of multi-omics data generated at an unprecedented rate, CNCB-NGDC constantly expands and updates core database resources by big data archive, integrative analysis and value-added curation. In the past year, efforts have been devoted to integrating multiple omics data, synthesizing the growing knowledge, developing new resources and upgrading a set of major resources. Particularly, several database resources are newly developed for infectious diseases and microbiology (MPoxVR, KGCoV, ProPan), cancer-trait association (ASCancer Atlas, TWAS Atlas, Brain Catalog, CCAS) as well as tropical plants (TCOD). Importantly, given the global health threat caused by monkeypox virus and SARS-CoV-2, CNCB-NGDC has newly constructed the monkeypox virus resource, along with frequent updates of SARS-CoV-2 genome sequences, variants as well as haplotypes. All the resources and services are publicly accessible at https://ngdc.cncb.ac.cn.

References

  1. Nucleic Acids Res. 2023 Jan 6;51(D1):D1196-D1204 [PMID: 36318242]
  2. Genomics Proteomics Bioinformatics. 2021 Aug;19(4):584-589 [PMID: 34175476]
  3. Nucleic Acids Res. 2021 Jan 8;49(D1):D121-D124 [PMID: 33166387]
  4. Mol Hortic. 2022 Oct 10;2(1):24 [PMID: 37789481]
  5. Nucleic Acids Res. 2023 Jan 6;51(D1):D969-D976 [PMID: 36263826]
  6. Nucleic Acids Res. 2023 Jan 6;51(D1):D994-D1002 [PMID: 36318261]
  7. Nucleic Acids Res. 2020 Jan 8;48(D1):D890-D895 [PMID: 31584095]
  8. Genomics Proteomics Bioinformatics. 2021 Apr;19(2):172-190 [PMID: 33581341]
  9. Elife. 2017 Dec 05;6: [PMID: 29206104]
  10. Nucleic Acids Res. 2015 Jan;43(Database issue):D54-8 [PMID: 25294826]
  11. Nucleic Acids Res. 2022 Jan 7;50(D1):D190-D195 [PMID: 34751395]
  12. Nucleic Acids Res. 2018 Jan 4;46(D1):D121-D126 [PMID: 29036693]
  13. Nucleic Acids Res. 2022 Jan 7;50(D1):D27-D38 [PMID: 34718731]
  14. Nucleic Acids Res. 2019 Jan 8;47(D1):D128-D134 [PMID: 30329098]
  15. Nucleic Acids Res. 2023 Jan 6;51(D1):D18-D28 [PMID: 36420893]
  16. Zool Res. 2020 Nov 18;41(6):705-708 [PMID: 33045776]
  17. Yi Chuan. 2020 Feb 20;42(2):212-221 [PMID: 32102777]
  18. Nucleic Acids Res. 2020 Jan 8;48(D1):D927-D932 [PMID: 31566222]
  19. Nucleic Acids Res. 2015 Jan;43(Database issue):D187-92 [PMID: 25399417]
  20. Nucleic Acids Res. 2023 Jan 6;51(D1):D853-D860 [PMID: 36161321]
  21. Science. 2022 May 13;376(6594):eabl4896 [PMID: 35549404]
  22. Nucleic Acids Res. 2017 Jan 4;45(D1):D18-D24 [PMID: 27899658]
  23. Genomics Proteomics Bioinformatics. 2020 Dec;18(6):749-759 [PMID: 33704069]
  24. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):173-185 [PMID: 32619768]
  25. Nat Genet. 2013 Jun;45(6):580-5 [PMID: 23715323]
  26. Genomics Proteomics Bioinformatics. 2021 Apr;19(2):243-252 [PMID: 33713850]
  27. Nucleic Acids Res. 2019 Jan 8;47(D1):D8-D14 [PMID: 30365034]
  28. Nucleic Acids Res. 2022 Jan 7;50(D1):D1004-D1009 [PMID: 34718752]
  29. Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21 [PMID: 21062823]
  30. Science. 2021 Dec 17;374(6574):abe6474 [PMID: 34914499]
  31. Genomics Proteomics Bioinformatics. 2017 Feb;15(1):14-18 [PMID: 28387199]
  32. Nucleic Acids Res. 2023 Jan 6;51(D1):D767-D776 [PMID: 36169225]
  33. Innovation (Camb). 2020 Nov 07;1(3):100058 [PMID: 34557722]
  34. Genomics Proteomics Bioinformatics. 2022 Feb;20(1):4-13 [PMID: 34487862]
  35. Nucleic Acids Res. 2022 Jan 7;50(D1):D1164-D1171 [PMID: 34634794]
  36. Nature. 2018 Oct;562(7726):203-209 [PMID: 30305743]
  37. Nucleic Acids Res. 2022 Jan 7;50(D1):D161-D164 [PMID: 34850943]
  38. Plant Biotechnol J. 2022 Dec;20(12):2239-2241 [PMID: 36069606]
  39. Genomics Proteomics Bioinformatics. 2021 Aug;19(4):578-583 [PMID: 34400360]
  40. Nucleic Acids Res. 2022 Jan 7;50(D1):D1016-D1024 [PMID: 34591957]
  41. Nucleic Acids Res. 2022 Jan 7;50(D1):D962-D969 [PMID: 34718745]
  42. Nucleic Acids Res. 2021 Jan 8;49(D1):D1186-D1191 [PMID: 33170268]
  43. Sci Data. 2022 Mar 30;9(1):121 [PMID: 35354824]
  44. Nucleic Acids Res. 2023 Jan 6;51(D1):D208-D216 [PMID: 36318250]
  45. Nucleic Acids Res. 2023 Jan 6;51(D1):D835-D844 [PMID: 36243988]
  46. Nucleic Acids Res. 2018 Jan 4;46(D1):D288-D295 [PMID: 29161430]
  47. Innovation (Camb). 2022 Aug 01;3(5):100296 [PMID: 36039088]
  48. Nucleic Acids Res. 2018 Jan 4;46(D1):D14-D20 [PMID: 29036542]
  49. Nucleic Acids Res. 2020 Jan 8;48(D1):D24-D33 [PMID: 31702008]
  50. Nucleic Acids Res. 2019 Jan 8;47(D1):D983-D988 [PMID: 30364969]
  51. Front Genet. 2022 Jan 07;12:810985 [PMID: 35069703]
  52. Nucleic Acids Res. 2023 Jan 6;51(D1):D186-D191 [PMID: 36330950]
  53. Genomics Proteomics Bioinformatics. 2021 Jun;19(3):343-345 [PMID: 34923125]
  54. Nucleic Acids Res. 2018 Jan 4;46(D1):D944-D949 [PMID: 29069473]
  55. Front Genet. 2022 Aug 11;13:956781 [PMID: 36035123]
  56. Nucleic Acids Res. 2023 Jan 6;51(D1):D1179-D1187 [PMID: 36243959]

MeSH Term

Humans
China
COVID-19
Databases, Genetic
Genomics
SARS-CoV-2
Knowledge Bases

Word Cloud

Similar Articles

Cited By