The contribution of databases towards understanding the universe of long non-coding RNAs.

Lina Ma, Zhang Zhang
Author Information
  1. Lina Ma: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China. malina@big.ac.cn. ORCID
  2. Zhang Zhang: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China. zhangzhang@big.ac.cn. ORCID

Abstract

No abstract text available.

References

  1. Frankish, A. et al. GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Res 51, D942–D949 (2023). [DOI: 10.1093/nar/gkac1071]
  2. Hon, C. C. et al. An atlas of human long non-coding RNAs with accurate 5’ ends. Nature 543, 199–204 (2017). [DOI: 10.1038/nature21374]
  3. Iyer, M. K. et al. The landscape of long noncoding RNAs in the human transcriptome. Nat. Genet. 47, 199–208 (2015). [DOI: 10.1038/ng.3192]
  4. Zhao, L. et al. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. Nucleic Acids Res. 49, D165–D171 (2021). [DOI: 10.1093/nar/gkaa1046]
  5. Li, Z. et al. LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations. Nucleic Acids Res. 51, D186–D191 (2023). [DOI: 10.1093/nar/gkac999]
  6. RNAcentral Consortium. RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49, D212–D220 (2021). [DOI: 10.1093/nar/gkaa921]
  7. Li, J. et al. TANRIC: an interactive open platform to explore the function of lncRNAs in cancer. Cancer Res. 75, 3728–3737 (2015). [DOI: 10.1158/0008-5472.CAN-15-0273]
  8. Li, J. H., Liu, S., Zhou, H., Qu, L. H. & Yang, J. H. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 42, D92–D97 (2014). [DOI: 10.1093/nar/gkt1248]
  9. Bao, Z. et al. LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases. Nucleic Acids Res. 47, D1034–D1037 (2019). [DOI: 10.1093/nar/gky905]
  10. Liu, L. et al. LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. Nucleic Acids Res. 50, D190–D195 (2022). [DOI: 10.1093/nar/gkab998]

MeSH Term

RNA, Long Noncoding
Databases, Genetic

Chemicals

RNA, Long Noncoding

Word Cloud

Similar Articles

Cited By