OpenLB
Open Library of Bioscience
Advanced Search
Nucleic acids research
Jan 05, 2024;52 (D1): D18-D32.

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024.

CNCB-NGDC Members and Partners
Author Information
PMID: 38018256 DOI: 10.1093/nar/gkad1078

Abstract

The National Genomics Data Center (NGDC), which is a part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support the global academic and industrial communities. With the rapid accumulation of multi-omics data at an unprecedented pace, CNCB-NGDC continuously expands and updates core database resources through big data archiving, integrative analysis and value-added curation. Importantly, NGDC collaborates closely with major international databases and initiatives to ensure seamless data exchange and interoperability. Over the past year, significant efforts have been dedicated to integrating diverse omics data, synthesizing expanding knowledge, developing new resources, and upgrading major existing resources. Particularly, several database resources are newly developed for the biodiversity of protists (P10K), bacteria (NTM-DB, MPA) as well as plant (PPGR, SoyOmics, PlantPan) and disease/trait association (CROST, HervD Atlas, HALL, MACdb, BioKA, BioKA, RePoS, PGG.SV, NAFLDkb). All the resources and services are publicly accessible at https://ngdc.cncb.ac.cn.

References

Nucleic Acids Res. 2024 Jan 5;52(D1):D1121-D1130 [PMID: 37843156]
Nucleic Acids Res. 2020 Jan 8;48(D1):D890-D895 [PMID: 31584095]
Mol Plant. 2023 May 1;16(5):794-797 [PMID: 36950735]
Cell. 2021 Feb 4;184(3):792-809.e23 [PMID: 33545035]
Nucleic Acids Res. 2019 Jan 8;47(D1):D78-D83 [PMID: 30357418]
Genomics Proteomics Bioinformatics. 2020 Dec;18(6):749-759 [PMID: 33704069]
Nature. 2018 Oct;562(7726):203-209 [PMID: 30305743]
Nucleic Acids Res. 2024 Jan 5;52(D1):D1651-D1660 [PMID: 37843152]
Nucleic Acids Res. 2018 Jan 4;46(D1):D288-D295 [PMID: 29161430]
Exp Biol Med (Maywood). 2018 Feb;243(3):213-221 [PMID: 29405771]
Nucleic Acids Res. 2024 Jan 5;52(D1):D882-D890 [PMID: 37791883]
Genomics Proteomics Bioinformatics. 2023 Oct 6;: [PMID: 37806555]
Mol Syst Biol. 2018 Apr 16;14(4):e8046 [PMID: 29661792]
Genomics Proteomics Bioinformatics. 2023 Oct 12;: [PMID: 37832784]
Genomics Proteomics Bioinformatics. 2023 Oct 26;: [PMID: 37898309]
Cell Rep. 2021 Nov 16;37(7):110017 [PMID: 34788621]
Nucleic Acids Res. 2015 Jan;43(Database issue):D54-8 [PMID: 25294826]
Nucleic Acids Res. 2023 Jan 6;51(D1):D1109-D1116 [PMID: 36243989]
Nucleic Acids Res. 2022 Jan 7;50(D1):D27-D38 [PMID: 34718731]
Nucleic Acids Res. 2023 Jan 6;51(D1):D18-D28 [PMID: 36420893]
Nat Rev Mol Cell Biol. 2023 Sep;24(9):601-602 [PMID: 37147495]
Zool Res. 2020 Nov 18;41(6):705-708 [PMID: 33045776]
Yi Chuan. 2020 Feb 20;42(2):212-221 [PMID: 32102777]
Methods Enzymol. 1996;266:141-62 [PMID: 8743683]
J Chem Inf Model. 2023 May 11;: [PMID: 37167092]
Nucleic Acids Res. 2022 Jul 5;50(W1):W276-W279 [PMID: 35412617]
Mol Cells. 2019 Mar 31;42(3):189-199 [PMID: 30764602]
Genomics Proteomics Bioinformatics. 2021 Aug;19(4):584-589 [PMID: 34175476]
Genomics Proteomics Bioinformatics. 2022 Dec 23;: [PMID: 36572336]
Nucleic Acids Res. 2021 Jan 8;49(D1):D121-D124 [PMID: 33166387]
PLoS Biol. 2006 Mar;4(3):e72 [PMID: 16494531]
Nucleic Acids Res. 2023 Jan 6;51(D1):D853-D860 [PMID: 36161321]
Nucleic Acids Res. 2024 Jan 5;52(D1):D1072-D1081 [PMID: 37870478]
Nucleic Acids Res. 2024 Jan 5;52(D1):D909-D918 [PMID: 37870433]
Nucleic Acids Res. 2017 Jan 4;45(D1):D18-D24 [PMID: 27899658]
Mol Hortic. 2022 Oct 10;2(1):24 [PMID: 37789481]
Nat Commun. 2023 Apr 12;14(1):2092 [PMID: 37045857]
Nucleic Acids Res. 2019 Jan 8;47(D1):D8-D14 [PMID: 30365034]
Nucleic Acids Res. 2022 Jan 7;50(D1):D1004-D1009 [PMID: 34718752]
Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21 [PMID: 21062823]
Nucleic Acids Res. 2023 Jan 6;51(D1):D141-D144 [PMID: 36350640]
Genomics Proteomics Bioinformatics. 2017 Feb;15(1):14-18 [PMID: 28387199]
Innovation (Camb). 2020 Nov 07;1(3):100058 [PMID: 34557722]
Pharmaceutics. 2023 May 31;15(6): [PMID: 37376078]
Mol Cancer Res. 2023 Jul 5;21(7):691-697 [PMID: 37027007]
Nucleic Acids Res. 2019 Jan 8;47(D1):D163-D169 [PMID: 30335176]
Clin Chem. 2015 Nov;61(11):1343-53 [PMID: 26408531]
Nucleic Acids Res. 2022 Jan 7;50(D1):D1164-D1171 [PMID: 34634794]
Plant Biotechnol J. 2022 Dec;20(12):2239-2241 [PMID: 36069606]
Nucleic Acids Res. 2024 Jan 5;52(D1):D1588-D1596 [PMID: 37933857]
Nature. 2015 Oct 1;526(7571):68-74 [PMID: 26432245]
Genomics Proteomics Bioinformatics. 2021 Aug;19(4):578-583 [PMID: 34400360]
Nucleic Acids Res. 2022 Jan 7;50(D1):D1016-D1024 [PMID: 34591957]
Nucleic Acids Res. 2024 Jan 5;52(D1):D1530-D1537 [PMID: 37930849]
Nucleic Acids Res. 2023 Jan 6;51(D1):D208-D216 [PMID: 36318250]
Nat Genet. 2013 Oct;45(10):1113-20 [PMID: 24071849]
Nucleic Acids Res. 2022 Jan 7;50(D1):D962-D969 [PMID: 34718745]
Clin Transl Med. 2022 Mar;12(3):e694 [PMID: 35352511]
Pol Arch Med Wewn. 2015;125(4):282-8 [PMID: 25764446]
Nucleic Acids Res. 2018 Jan 4;46(D1):D14-D20 [PMID: 29036542]
Nucleic Acids Res. 2020 Jan 8;48(D1):D24-D33 [PMID: 31702008]
Nat Ecol Evol. 2018 Apr;2(4):713-720 [PMID: 29459708]
Front Genet. 2022 Jan 07;12:810985 [PMID: 35069703]
Nucleic Acids Res. 2019 Jan 8;47(D1):D983-D988 [PMID: 30364969]
Genomics Proteomics Bioinformatics. 2023 Feb;21(1):13-23 [PMID: 35901961]
Nucleic Acids Res. 2023 Jul 5;51(W1):W553-W559 [PMID: 37216588]
Nucleic Acids Res. 2024 Jan 5;52(D1):D1315-D1326 [PMID: 37870452]
Science. 2016 Nov 11;354(6313):760-764 [PMID: 27738015]
Nature. 2021 Feb;590(7845):290-299 [PMID: 33568819]
Genomics Proteomics Bioinformatics. 2021 Jun;19(3):343-345 [PMID: 34923125]

Grants

  1. XDB38030200/Chinese Academy of Sciences
  2. 2023YFC3041500/National Key Research & Development Program of China
  3. 31970565/National Natural Science Foundation of China
  4. 153D31KYSB20170121/International Partnership Program of the Chinese Academy of Sciences
  5. WX145XQ07-04/Genomics Data Center Construction of Chinese Academy of Sciences
  6. 2019kfyRCPY043/Fundamental Research Funds for the Central Universities
  7. QYZDJ-SSW-SYS009/Key Research Program of Frontier Sciences of the Chinese Academy of Sciences
  8. 2019104/The Youth Innovation Promotion Association of the Chinese Academy of Sciences
  9. SQ2017YFSF090210/The Special Project on Precision Medicine under the National Key R&D Program
  10. 2019M652623/China Postdoctoral Science Foundation
  11. ANSO-PA-2020-07/The Professional Association of the Alliance of International Science Organizations
  12. 2018FY10080002/Funds for Basic Resources Investigation Research of the Ministry of Science and Technology
  13. 2019FY100102/Special Project on National Science and Technology Basic Resources Investigation
  14. KFZD-SW-219-5/Key Research Program of the Chinese Academy of Sciences
  15. FCC/1/1976-18-01/King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR)
  16. KFJ-BRP-017-79/Chinese Academy of Sciences
  17. 202044/Specialized Research Assistant Program of the Chinese Academy of Sciences
  18. 32061143024/International Cooperation and Exchange of the National Natural Science Foundation of China
  19. 2017SHZDZX01/Shanghai Municipal Science and Technology Major Project
  20. 2019ZT08Y464/Guangdong Province 'Pearl River Talent Plan' Innovation and Entrepreneurship Team Project
  21. 2020B1111170004/Guangdong Provincial Clinical Research Center for Digestive Diseases
  22. CAS-WX2021SF-0307/National Key Clinical Discipline and the Informatization Plan of Chinese Academy of Sciences
  23. /Strategic Priority Research Program of the Chinese Academy of Sciences

MeSH Term

Big Data
China
Databases, Genetic
Eukaryota
Genomics
Computational Biology
Internet
Journal Article

Links to CNCB-NGDC Resources

Database Commons: DBC001802 (NGDC)

Word Cloud

Similar Articles

Cited By