Lun Li
Associate Professor
Software & System Development
Email: lil (AT) big.ac.cn
Tel:
Software & System Development
Email: lil (AT) big.ac.cn
Tel:
EMPLOYMENT
Associate Professor, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2025-08-01 to present
Assistant Professor, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2023-05-01 to 2025-07-31
Postdoctor, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2020-10-10 to 2023-04-06
PhD in Operational Research and Cybernetics , School of Mathematical Sciences, University of Chinese Academy of Sciences, 2013-09-01 to 2020-09-24
BSc in Mathematics and Applied Mathematics, School of Mathematics, Jilin University, 2008-09-01 to 2012-06-26
Research on Pathogen Evolutionary Algorithm
Lun Li#, Bo Xu#, Dongmei Tian#, Anke Wang#, Junwei Zhu#, Cuiping Li, Na Li, Wei Zhao, Leisheng Shi, Yongbiao Xue*, Zhang Zhang*, Yiming Bao*, Wenming Zhao* and Shuhui Song*, McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks, Briefings In Bioinformatics, 2023, 24(3), bbad174.
Lun Li#, Cuiping Li#, Na Li#, Dong Zou, Wenming Zhao, Hong Luo, Yongbiao Xue*, Zhang Zhang*, Yiming Bao*, Shuhui Song*, Machine learning early detection of SARS-CoV-2 high-risk variants, Advanced Science, 2024, 11(45), e2405058.
Lun Li, Renmin Han*, Zhaotian Zhang, Tiande Guo, Zhiyong Liu and Fa Zhang*, Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography, BMC Bioinformatics, 2020, 21(Suppl 6), 202.
Renmin Han#, Lun Li#, Peng Yang, Fa Zhang*, and Xin Gao*, A novel constrained reconstruction model towards high-resolution subtomogram averaging, Bioinformatics, 2021, 37(11), 1616-1626.
Lun Li# as co-first author in CNCB-NGDC member, Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2025, Nucleic Acids Res, 2025, 53(D1), D30-D44.
Lun Li# as co-first author in CNCB-NGDC member, Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022, Nucleic Acids Res, 2022, 50(D1), D27-D38.
Lun Li as author in CNCB-NGDC member, Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023, Nucleic Acids Res, 2023, 51(D1), D18-D28.
Lun Li as author in CNCB-NGDC member, Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024, Nucleic Acids Res, 2024, 52(D1), D18-D32.
Cuiping Li, Lina Ma, Dong Zou, Rongqin Zhang, Xue Bai, Lun Li, Gangao Wu, Tianhao Huang, Wei Zhao, Enhui Jin, Yiming Bao, Shuhui Song, RCoV19: A One-Stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-Warning, Genomics Proteomics Bioinformatics, 2023, 21(5), 1066-1079.
Renmin Han, Xiaohua Wan, Lun Li, Albert Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao, Fa Zhang, AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction, Bioinformatics, 2019, 35(2), 319-328.
Yu Chen, Zihao Wang, Lun Li, Jingrong Zhang, Xiaohua Wan, Fei Sun and Fa Zhang, Autogdeterm: automatic geometry determination for electron tomography, Tsinghua Science and Technology, 2018, 23(4), 369-376.
Zihao Wang, Yu Chen, Jingrong Zhang, Lun Li, Xiaohua Wan, Zhiyong Liu, Fei Sun, Fa Zhang, ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer, J Comput Biol, 2018, 25(3), 270-281.
Yu Chen, Zihao Wang, Lun Li, Xiaohua Wan, Fei Sun and Fa Zhang, A Fully Automatic Geometric Parameters Determining Method for Electron Tomography. Bioinformatics Research and Applications: 13th International Symposium, ISBRA 2017, Honolulu, HI, USA, May 29–June 2, 2017, Proceedings 13. Springer International Publishing, 2017, 385-389.
Zihao Wang, Yu Chen, Jingrong Zhang, Lun Li, Xiaohua Wan, Zhiyong Liu, Fei Sun and Fa Zhang. Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer. Bioinformatics Research and Applications: 13th International Symposium, ISBRA 2017, Honolulu, HI, USA, May 29–June 2, 2017, Proceedings 13. Springer International Publishing, 2017, 258-269.
Yu Chen, Zihao Wang, Jingrong Zhang, Lun Li, Xiaohua Wan, Fei Sun, Fa Zhang, Accelerating electron tomography reconstruction algorithm ICON with GPU, Biophys Rep, 2017, 3(1), 36-42.
Cui Ying, Bixia Tang, Gangao Wu, Lun Li, Xin Zhang, Zhenglin Du, Wenming Zhao, Classification of Dog Breeds Using Convolutional Neural Network Models and Support Vector Machine. Bioengineering (Basel), 2024, 11(11), 1157.
Yongrong Cao, Hong Luo, Rongye Ye, Lun Li, Zishan Wu, Dongmei Tian, Shuhui Song, Img2Variety: Image-Based Intraspecific Varieties Identification Across the Whole Growth Period, Plant Phenomics, 2025, In Press.
SOFT COPYRIGHT
新冠病毒单体型网络在线分析软件（登记号：2023SR0397613），主要完成人
新冠病毒序列监测及高风险变体预警系统（登记号：2023SR0397611），主要完成人
PATENT
一种单体型网络的构建方法、装置、电子设备及介质，202411406825.3，已授权，第一发明人
北京市科学技术委员会，北京市科技新星计划，病毒单体型网络快速构建算法研究及应用软件开发，2021.12 至 2024.12，项目负责人，结题
中华人民共和国科学技术部，重点研发计划，病原感染鉴定识别国家级基因组参比数据库与预警平台构建及应用，2024.12 至 2027.11，任务负责人，在研
中华人民共和国科学技术部，重点研发计划，核心生物资源的标准化数据库建设，2025.06 至 2026.11，课题骨干，在研
中华人民共和国科学技术部，重点研发计划，新型冠状病毒变异监测及功能影响分析，2021.02 至 2023.01，课题骨干，结题
中华人民共和国科学技术部，重点研发计划，奥密克戎流行支系的演化变异周期规律及网络进化特征研究，2023.04 至 2024.03，其他研究人员，结题
国家自然科学基金委员会，面上项目，面向海量病毒基因组数据的单体型网络快速构建方法，2022.01 至 2025.12，课题骨干，结题
国家自然科学基金委员会，面上项目，基于单体型网络拓扑结构动态鉴定新冠病毒演化谱系算法研究，2023.01 至 2026.12，课题骨干，在研
国家自然科学基金委员会，面上项目，微生物组菌株识别及其生长动力学量化的高精度计算方法研发，2023.01 至 2026.12，课题骨干，在研
中国科学院，“一带一路”国际科学组织联盟联合研究合作专项，全球新发突发传染病危险株系精准预警方法研究，2022.12 至 2025.12，课题骨干，结题
中国科学院，战略性先导科技专项（B类），生物医学大数据操作系统Bio-0S集成测试，2023.07 至 2024.05，课题骨干，结题
中国科学院，网络安全和信息化专项，生物组学基础核心信息库体系建设，2024.08 至 2029.07，课题骨干，在研