Yingke Ma

Assistant Professor

Email: mayk (AT) big.ac.cn

Tel: 86-10-84097620


  • Assistant Professor, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China, 2017 - Present

  • Postdoctoral Researcher, Carver College of Medicine, University of Iowa, Iowa, USA, 2015-2016


  • Ph.D. in Bioinformatics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, 2015

  • B.S. in Computer Science, Peking University, Beijing, China, 2007


  • Development of third generation sequencing data processing software

  • Omics data analysis

  • Web development


  • GWH (Genome Warehouse)

  • AML (Multicenter pediatric AML data registry system)


  • Talk: Resources at Big Data Center, Beijing Institute of Genomics. International Symposium on Global Biodiversity and Health Big Data. Islamabad, Pakistan. July 18, 2019

PUBLICATIONS (#First author, *Corresponding author)

  1. Ma, Y# as co-first author in National Genomics Data Center Members and Partners (2020), Database Resources of the National Genomics Data Center in 2020, Nucleic Acids Research. [PMID: 31702008]

  2. Xiong, Z., Li, M., Yang, F., Ma, Y., Sang, J., Li, R., ... & Bao, Y. (2019). EWAS Data Hub: a resource of DNA methylation array data and metadataNucleic acids research. [PMID: 31584095]

  3. Ma, Y# as co-first author in BIG Data Center Members and Partners (2019), Database Resources of the BIG Data Center in 2019Nucleic Acids Research, 47(D1): D8-D14[PMID: 30365034]

  4. Fu, S., Ma, Y., Yao, H., Xu, Z., Chen, S., Song, J., & Au, K. F. (2018). IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencingBioinformatics34(13), 2168-2176.[PMID:29905763]

  5. Ma, Y as co-author in BIG Data Center Members and Partners (2018), Database Resources of the BIG Data Center in 2018Nucleic Acids Research, 47(D1): D8-D14. [PMID: 29036542]

  6. Han, Y., Chu, X., Yu, H., Ma, Y. K., Wang, X. J., Qian, W., & Jiao, Y. (2017). Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells. Science Bulletin62(19), 1304-1314.

  7. Luo, G. Z., Yang, W., Ma, Y. K., & Wang, X. J. (2014). ISRNA: an integrative online toolkit for short reads from high-throughput sequencing dataBioinformatics30(3), 434-436. [PMID:24300438]

  8. Wu, H. J.#, Ma, Y. K.#, Chen, T., Wang, M.*, & Wang, X. J*. (2012). PsRobot: a web-based plant small RNA meta-analysis toolboxNucleic acids research40(W1), W22-W28. [PMID:22693224]