http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Canghai91 2026-08-27T17:46:19Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183816 2014-06-11T01:57:58Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> <br /> <br /> [[File:Expression of PB.JPG]]<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File:Evolution of PB.JPG]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183815 2014-06-11T01:57:41Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> [[File:Expression of PB.JPG]]<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File:Evolution of PB.JPG]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Expression_of_PB.JPG&diff=183814 2014-06-11T01:56:40Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183812 2014-06-11T01:52:25Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File:Evolution of PB.JPG]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Evolution_of_PB.JPG&diff=183811 2014-06-11T01:51:42Z

<p>Canghai91: uploaded a new version of &amp;quot;File:Evolution of PB.JPG&amp;quot;</p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183810 2014-06-11T01:50:13Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File::Evolution of PB.JPG]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183807 2014-06-11T01:42:40Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File:Evolution of PB]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=183805 2014-06-11T01:41:26Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> The evolution of PB can be described as follows：<br /> <br /> <br /> [[File:Evolution of PB]]<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Evolution_of_PB.JPG&diff=183804 2014-06-11T01:41:12Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173986 2014-05-29T09:06:48Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> <br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> <br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> <br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> <br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> <br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173985 2014-05-29T09:06:10Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> <br /> [1]Shandong university of science and technology college of life science, shandong zibo 255049;<br /> [2]Shandong academy of agricultural sciences high-tech research center, shandong jinan 250100<br /> [3]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100<br /> [4]Shandong academy of agricultural sciences high-tech research center, jinan, shandong province, 250100;<br /> [5]The ministry of agriculture of huanghuaihai laboratory of crop genetic improvement and biotechnology, shandong jinan 250100<br /> [6]Shandong university of science and technology college of life science, shandong zibo, 255049<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173979 2014-05-29T09:02:28Z

<p>Canghai91: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> <br /> [1]Local and systemic resistance in Arabidopsis thaliana in response to Pseudomonas syringae: impact of light and phytosterols. Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg <br /> <br /> [2]YANG Hui, XUE Yan-jiu, WANG Ying-ying, MA Hui-quan, XIE Xian-zhi.Expression Patterns of One Phytochrome B-Regulated NBS-LRR Family Gene in Rice.Shandong Agricultural Sciences.2011, (6).<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173975 2014-05-29T08:58:31Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> <br /> ===Function===<br /> <br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173973 2014-05-29T08:57:32Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> <br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.<br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0272900&diff=173971 2014-05-29T08:56:46Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance <br /> as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS. <br /> <br /> ===Expression===<br /> The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection. <br /> <br /> ===Evolution===<br /> <br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0272900|<br /> Description = Similar to Skp1 (Fragment)|<br /> Version = NM_001069277.1 GI:115478293 GeneID:4346585|<br /> Length = 19453 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0272900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:6037570..6057022|<br /> CDS = 6037764..6038320,6046484..6046523|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:6037570..6057022<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069277.1 RefSeq:Os09g0272900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=173896 2014-05-29T07:29:04Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> <br /> <br /> <br /> [4]National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=173895 2014-05-29T07:28:15Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> [[File:Homologous sequences.JPG]]<br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> <br /> <br /> <br /> [4]National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=173894 2014-05-29T07:27:00Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].[[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> <br /> <br /> <br /> [4]National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172947 2014-05-26T11:32:40Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> <br /> <br /> <br /> [4]National Institute of Agrobiological Sciences (NIAS), Kannon-dai 2-1-2, Tsukuba, Ibaraki, 305-8602, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172943 2014-05-26T11:20:17Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2)[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> --[[User:Canghai91|Canghai91]] 19:20, 26 May 2014 (CST)fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172940 2014-05-26T11:17:54Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene[http://www.ncbi.nlm.nih.gov/pubmed/18247056].<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172936 2014-05-26T11:14:59Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses[http://ac.els-cdn.com/S098194280101333X/1-s2.0-S098194280101333X-main.pdf?_tid=63c95770-e4c3-11e3-8966-00000aab0f26&amp;acdnat=1401101539_8905c05f1e1ed53663506bdbbcdfa6eb].<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene.<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0746400&diff=172935 2014-05-26T11:11:23Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> 　　D10,carotenoid cleavage dioxygenase 8（OsCCD8）controls lateral bud outgrowth of rice, and then ultimate control of rice tillers. OsCCD8 is an important enzyme of biosynthesis Strigolactones process.It´s involved in the biosynthesis of Strigolactones / Strigolactones derivative SL.And D10 may play an important role in auxin regulation of SL.D10 may plays an important role in regulate Strigolactones and its derivatives by auxin , but may reduce the transport ability of auxin and promote the synthesis of cytokinin by reducing the auxin levels at the same time.<br /> <br /> ===Expression===<br /> D10 is a carotenoid cleavage dioxygenase, mainly expressed in vascular cells of various organs, and induced by exogenous auxin.<br /> In addition, the expression of D10 up-regulated in 6 mutated branches,including d3,d10,d14,d17,d27,htdi.But MAX2 and MAX3 rice homologous gene D3 and HTD1 have no expression change in these mutants.<br /> These finding may indicate that D10's transcription may be key factor of regulating branches inhibition pathway.(Arie et al.,2007)<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> 　　<br /> (D10) is a rice ortholog of MAX4/RMS1/DAD1,<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> 1 The State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese <br /> Academy of Sciences<br /> 2 College of Biological Sciences and Biotechnology, Beijing Forestry University<br /> 3 Department of Applied Biological Chemistry, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo<br /> 4 RIKEN Plant Science Center, Japan<br /> 5 Research Institute for Bioresources, Okayama University, Kurashiki, Okayama 710-0046, Japan<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> 1. Shuying Zhang;Gang Li;Jun Fang;Weiqi Chen;Haipai Jiang;Junhuang Zou;Xue Liu;Xianfeng Zhao;Xiaobing Li;Chengcai Chu;Qi Xie;Xiangning Jiang;Lihuang Zhu<br /> The Interactions among DWARF10, Auxin and Cytokinin Underlie Lateral Bud Outgrowth in Rice.Journal of Integrative Plant Biology, 2010, 52(7): 626-638<br /> <br /> 2. Shinsaku Ito;Nobutaka Kitahata;Mikihisa Umehara;Atsushi Hanada;Atsutaka Kato;Kotomi Ueno;Kiyoshi Mashiguchi;Junko Kyozuka;Koichi Yoneyama;Shinjiro Yamaguchi;Tadao Asami .A New Lead Chemical for Strigolactone Biosynthesis Inhibitors. Plant and Cell Physiology, 2010, 51(7): 1143-1150<br /> <br /> 3. Tomotsugu Arite;Hirotaka Iwata;Kenji Ohshima;Masahiko Maekawa;Masatoshi Nakajima;Mikiko Kojima;Hitoshi Sakakibara and Junko Kyozuka<br /> DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.The Plant Journal, 2007, 51(6): 1019-1029<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0746400|<br /> Description = Carotenoid oxygenase family protein|<br /> Version = NM_001050764.2 GI:297597605 GeneID:4326177|<br /> Length = 3109 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0746400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:32981304..32984412|<br /> CDS = 32981304..32981461,32981562..32981854,32981954..32982147,32982254..32982997,32984092..32984412&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:32981304..32984412<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:32981304..32984412<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtctcccgctatgctgcaggcgtcgtcgctgtgcgtatccgcggcgctgtcaggcgccgcgagccggccgggccgcctggccagccaggggcaccagggcaagcgggccgtggcgcagcctctcgcggctagcgccgtgacggaggcagcgccgcccgcgccggtcgtcgcgccgccggcccgccccgtcgacgccccgcggcgccgtggcggacgtggcggcggcggaggcggcggcgagctcgtggcgtggaagagtgtacggcaggagaggtgggagggtgcgctcgaggtggacggagagctgcctctctggctggatggcacgtacctgaggaacggcccgggactatggaacctcggcgactacggcttccggcacctgttcgacggctacgcgacgctggtgcgcgtctcgttccgcggcggccgcgccgtgggcgcgcaccggcagatcgagtcggaggcgtacaaggcggcgcgcgcgcacggcaaggtgtgctaccgcgagttctcggaggtgcccaagccggacaacttcctgtcctacgtcggccagctggcgaccctcttctcgggctcgtcgctcaccgacaactccaacaccggcgtcgtcatgctcggcgacggccgcgtgctctgcctcacggagaccatcaagggctccatccaggtcgacccggacacgctcgacacggtcggcaagttccagtacacggacaagctgggcgggctgatccactcggcgcacccgatcgtgaccgacaccgagttctggacgctgatccccgacctgatccggcccggctacgtggtggcgaggatggacgccggtagcaacgagaggcagttcgtcggcagggtggactgccgcggcgggccggcgccagggtgggtgcactcgttccccgtcaccgagcactacgtcgtcgtgccggagatgccgctccgctactgcgccaagaacctcctccgcgccgagcccacgccgctgtacaagttcgagtggcacctcgagtccggcagctacatgcacgtcatgtgcaaggccagcggcaagattgtggcgagcgtggaggtgccgccgttcgtgacgttccacttcatcaacgcgtacgaggagacggacgaggaggggcgcgtgacggcgatcatcgccgactgctgcgagcacaacgccaacaccgccatcctcgacaagctccgcctccacaacctccgctcctccagcggccaggacgtcctccccgacgccagggtggggcggttcaggatccccctggacgggagccagttcggcgagctggagacggcgctggacccggaggagcacgggcggggcatggacatgtgcagcatcaacccggcgcacgtcggcagggagtaccggtacgcctacgcctgcggcgcccgccggccgtgcaacttccccaacacgctcaccaaggtcgacctggtggagaggacggccaagaactggcacgaggagggctccgtgccgtccgagcccttcttcgtgccacgccccggcgccaccgaggaagacgacggcgtggcgatatcgatggtgagcgccaaggacgggtcgggctatgcgctggtgctggacggcaagacgttcgaggaggtcgcgcgggccaagttcccgtacgggctgccctacggcttgcactgctgctgggtgcccaggaaaaggaacagcaagtaa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAA SAVTEAAPPAPVVAPPARPVDAPRRRGGRGGGGGGGELVAWKSVRQERWEGALEVDGE LPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKA ARAHGKVCYREFSEVPKPDNFLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTE TIKGSIQVDPDTLDTVGKFQYTDKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARM DAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYK FEWHLESGSYMHVMCKASGKIVASVEVPPFVTFHFINAYEETDEEGRVTAIIADCCEH NANTAILDKLRLHNLRSSSGQDVLPDARVGRFRIPLDGSQFGELETALDPEEHGRGMD MCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVERTAKNWHEEGSVPSEPFFVP RPGATEEDDGVAISMVSAKDGSGYALVLDGKTFEEVARAKFPYGLPYGLHCCWVPRKR NSK&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;2952..3109#2559..2851#2266..2459#1416..2159#1..321#atgtctcccgctatgctgcaggcgtcgtcgctgtgcgtatccgcggcgctgtcaggcgccgcgagccggccgggccgcctggccagccaggggcaccagggcaagcgggccgtggcgcagcctctcgcggctagcgccgtgacggaggcagcgccgcccgcgccggtcgtcgcgccgccggcccgccccgtcgacgccccgcggcgccgtggcggacgtggcggcggcggaggcggcggcgagctcgtggcgtggaagagtgtacggcaggagaggtgggagggtgcgctcgaggtggacggagagctgcctctctggctggtgggttaagcctcctactgattgcaaatctccctaaatatgacttgatttggcttttgccttctctccaccctaattaagtattcatgaacacaccataacctcagcattttataagatctgccggtggtcaagctaaggctagccgtgcatttttcattcaagaatgcgaatcttttctgttattttgattcaaaggtttcccagtactccatatcgctttcttgagatcatctataaactaaagatccttttgaacatcttagtaaaaaagcatgcacaacatcttcccacacattgagaaatacgaaaggcactttctggaccacatcactgtgcaacaaatcctttataattaacctaaccattttcatcttgtagcatctccttgattagtgcaggctaaccgctgacctagagcacatatatgcatatagccccagaagggtcctaaaaaggtaccagctttggccacgtacctagcatatttttaccagcagtatctaacacgccagggtatattacttgccgactgtcatttttaatttccactgtgccagcagttgctgaagcactcacccaaatcttcagtaatttgatcgacaaagaggagggcgacactaacttaccctatgctggcctagcgaaaaggagatggcatcttggcactcacgatgcttgcggggaacacaacatatatacccagattctctgctcacccctagcttcgatcggcgacaacaatggcatcactgtcttgtggttgcagttttgttgcaccccgcaactctctgaaaacaaaagtcaaaaaccttggtctcccctaactccaagtgatcttatcactgttcttgccaattttgatagtgacttgatttgaggaattaatacaggtgtacatgtagtataatattgttgtaactttgtagttacactcactaagctatggataatacaatcgtttcagctaattaaaaatgcaatcttctgaggtaagctcgtggatagattaatttgtcggtcgttaattagaggtggacggatttgtcgacgtgctgcaaatgattgatcggatcgatgcatacttgctgcaggatggcacgtacctgaggaacggcccgggactatggaacctcggcgactacggcttccggcacctgttcgacggctacgcgacgctggtgcgcgtctcgttccgcggcggccgcgccgtgggcgcgcaccggcagatcgagtcggaggcgtacaaggcggcgcgcgcgcacggcaaggtgtgctaccgcgagttctcggaggtgcccaagccggacaacttcctgtcctacgtcggccagctggcgaccctcttctcgggctcgtcgctcaccgacaactccaacaccggcgtcgtcatgctcggcgacggccgcgtgctctgcctcacggagaccatcaagggctccatccaggtcgacccggacacgctcgacacggtcggcaagttccagtacacggacaagctgggcgggctgatccactcggcgcacccgatcgtgaccgacaccgagttctggacgctgatccccgacctgatccggcccggctacgtggtggcgaggatggacgccggtagcaacgagaggcagttcgtcggcagggtggactgccgcggcgggccggcgccagggtgggtgcactcgttccccgtcaccgagcactacgtcgtcgtgccggagatgccgctccgctactgcgccaagaacctcctccgcgccgagcccacgccgctgtacaagttcgagtggcacctcgagtccggcagctacatgcacgtcatgtgcaaggccagcggcaagattgtaagccatcatcaatcgctgccgcccgtagtgcgttcccgttttgcctatttaattggttgggtgatctaatgatgatatttgtcgggacgatggccaaccgaaggtggcgagcgtggaggtgccgccgttcgtgacgttccacttcatcaacgcgtacgaggagacggacgaggaggggcgcgtgacggcgatcatcgccgactgctgcgagcacaacgccaacaccgccatcctcgacaagctccgcctccacaacctccgctcctccagcggccaggacgtcctccccgacgccaggtacgtacacacacgagccacacgacgacgtcccgccgtcaatttgctacgctacgcatgcacgtatgcacgatggatgacggggaacaccatgtgtagggtggggcggttcaggatccccctggacgggagccagttcggcgagctggagacggcgctggacccggaggagcacgggcggggcatggacatgtgcagcatcaacccggcgcacgtcggcagggagtaccggtacgcctacgcctgcggcgcccgccggccgtgcaacttccccaacacgctcaccaaggtcgacctggtggagaggacggccaagaactggcacgaggagggctccgtgccgtccgagcccttcttcgtgccacgccccggcgccaccgaggaagacgacggttagtgtcaccatctctcctcgttggctgcgtatacgtacgtcttggctttgcctcgtttcgtttgtaataacttgaccaactctgttattgatggcaggcgtggcgatatcgatggtgagcgccaaggacgggtcgggctatgcgctggtgctggacggcaagacgttcgaggaggtcgcgcgggccaagttcccgtacgggctgccctacggcttgcactgctgctgggtgcccaggaaaaggaacagcaagtaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050764.2 RefSeq:Os01g0746400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172934 2014-05-26T11:10:27Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses.<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> The responses of individual genes to salicylic acid, jasmonic acid, and ethylene induced defense signaling pathways in rice are likely to be different from those in dicot plants. Transcript levels in healthy leaves, roots, and flowers varied according to each gene.<br /> <br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> ----<br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172932 2014-05-26T11:09:34Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins(PR) have production/accumulation represents an essential component of the active plant defence repertoire.And they have been used as markers of plant defense responses.The dicot PR1 are recognized as reliable marker genes in defence/stress responses.<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.<br /> <br /> Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172918 2014-05-26T09:33:50Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.<br /> <br /> They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172913 2014-05-26T09:24:15Z

<p>Canghai91: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> [1]Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> [2]Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> [3]Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> <br /> [4]Ganesh Kumar Agrawala§, Randeep Rakwalb§‡*, Nam-Soo Jwac, Vishwanath Prasad Agrawala.Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating omponents participating during defence/stress response.Plant Physiol. Biochem. 39 (2001) 1095−1103<br /> <br /> <br /> [5]Ganesh Kumar Agrawal,*,1 Nam-Soo Jwa,† and Randeep Rakwal. A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones,and Protein Phosphatase Inhibitors. Biochemical and Biophysical Research Communications 274, 157–165 (2000)<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172912 2014-05-26T09:23:19Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> <br /> <br /> <br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> <br /> <br /> <br /> <br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172911 2014-05-26T09:23:04Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> [1]Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, GPO Box 8207, Nepal<br /> [2]Department of Agricultural Biology, College of Agriculture and Life Science, Seoul National University<br /> [3]Core Research for Evolutional Science and Technology (CREST), Honcho 4-1-8, Kawaguchi, Saitama 332, Japan<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172910 2014-05-26T09:19:23Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> <br /> <br /> [[File:Homologous sequences.JPG]]<br /> <br /> <br /> <br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172909 2014-05-26T09:18:59Z

<p>Canghai91: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> <br /> <br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> <br /> <br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> <br /> <br /> <br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2<br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> [[File:Homologous sequences.JPG]]<br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172908 2014-05-26T09:18:28Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Pathogenesis-related proteins have production/accumulation represents an essential component of the active plant defence repertoire.They are defined as plant proteins that are induced specifically in pathological or related situations.Activation of OsPR1 genes is an important part of the defence/stress response(s) in rice.<br /> <br /> <br /> <br /> ===Expression===<br /> OsPR1a and OsPR1b genes were primarily characterized against jasmonic acid, ethylene and protein phosphatase 2A inhibitors. The dicot PR1 are recognized as reliable marker genes in defence/stress responses.SA, ABA and H2O2 up-regulate the expression of OsPR1a and OsPR1b genes(fig1)<br /> (fig2).<br /> [[File:Expression of OsPR1 influenced.JPG]]<br /> fig1:The expression of OsPR1a and OsPR1b genes influenced by SA, ABA and H2O2 <br /> <br /> [[File:Expression of OsPR1 influenced by SA.JPG]]<br /> fig2:The progress of OsPR1a and OsPR1b genes expression influenced by SA, ABA and H2O2 <br /> <br /> <br /> <br /> ===Evolution===<br /> Alignment of the deduced rice PR1 protein sequence (OsPR1a) with homologous sequences(fig3). The most homologous monocot sequences were identified by database searches with the Blast algorithm, whereas the Arabidopsis thaliana and tobacco sequences are shown as examples of dicot PR1 genes.An arrowhead indicates the putative processing site and boxes indicate the consensus regions I and II. Asterisks represent identical amino acid residues and dashes indicate gaps introduced to optimize alignment.<br /> [[File:Homologous sequences.JPG]]<br /> fig3:Rice PR1 protein sequence (OsPR1a) with homologous sequences<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Expression_of_OsPR1_influenced.JPG&diff=172907 2014-05-26T09:15:42Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Homologous_sequences.JPG&diff=172900 2014-05-26T09:09:26Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Expression_of_OsPR1_influenced_by_SA.JPG&diff=172890 2014-05-26T09:03:32Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os07g0129200&diff=172843 2014-05-26T08:16:16Z

<p>Canghai91: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Kamrun Nahar, Tina Kyndt, David De Vleesschauwer, Monica Hö, fte, Godelieve Gheysen.The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice.Plant Physiology, 2011, 157(1): 305-316<br /> <br /> <br /> Ichiro Mitsuhara; Takayoshi Iwai; Shigemi Seo; Yuki Yanagawa; Hiroyuki Kawahigasi; Sakino Hirose; Yasunobu Ohkawa; Yuko Ohashi.Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).Molecular Genetics and Genomics, 2008, 279(4): 415-427 DOI: 10.1007/s00438-008-0322-9 <br /> <br /> <br /> Ganesh Kumar Agrawal; Nam-Soo Jwa; Randeep Rakwal.A Novel Rice (Oryza sativa L.) Acidic PR1 Gene Highly Responsive to Cut, Phytohormones, and Protein Phosphatase Inhibitors.Biochemical and Biophysical Research Communications, 2000, 274(1): 157-165<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os07g0129200|<br /> Description = PR1a protein|<br /> Version = NM_001065350.1 GI:115470432 GeneID:4342317|<br /> Length = 792 bp|<br /> Definition = Oryza sativa Japonica Group Os07g0129200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|<br /> AP = Chromosome 7:1544202..1544993|<br /> CDS = 1544290..1544796|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008400:1544202..1544993<br /> source=RiceChromosome07<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGV GPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWV SEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPG NFVGQSPY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;89..595#tcgatctccatcatctcttcgtctactaacaaagttataatatcaaattaaggtatatatatatatatatagtagctagcttcaattaatggcgagttcgtcgagcaggttatcctgctgcttgctggtgctcgcggcggcggccatggcggcgacggcgcagaactcggcgcaggacttcgtggacccgcacaacgcggcgagggccgacgtcggggtggggccggtgagctgggacgacacggtggcggcgtacgcggagagctacgcggcgcagcggcagggcgactgcaagctggagcactcggactccggcgggaagtacggcgagaacatcttctggggctccgccggcggcgactggacggcggcgagcgccgtgtcggcgtgggtgtcggagaagcagtggtacgaccacggcagcaacagctgctcggcgccggaggggagctcgtgcgggcactacacgcaggtggtgtggcgcgactcgacggcgatcggctgcgcccgcgtcgtctgcgacggcgacctcggcgtcttcatcacctgcaactactcgccgccgggcaacttcgtcggccaatctccctactgattaattaattaattatattatcacactcactaattaatcatatcgtatgctatgctacgtgtttatgcatgtatggacatgtagtgtcatatggtatatcgtatatgtgtacgtataatatacgtacgtatgctggtgagaataaatccgatgaataaataaataaagctgtactgtcagccgtatttgcttagtgt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065350.1 RefSeq:Os07g0129200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 7]]<br /> [[Category:Chromosome 7]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172824 2014-05-26T08:04:45Z

<p>Canghai91: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|128px|thumb|frame|right|Morphology of the wild type and dwt1 plants after heading]]<br /> [[File:dwt1-2.jpg|128px|thumb|frame|right|Mature main shoots and tillers with leaves removed from the culm]]<br /> [[File:dwt1-3.jpg|128px|thumb|frame|right|Close-up view of the internodes after heading stage]]<br /> [[File:dwt1-4.jpg|128px|thumb|frame|right|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading]]<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172679 2014-05-26T04:50:05Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type.<br /> [[File:矮化基因作用.JPG]]<br /> <br /> In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172678 2014-05-26T04:49:18Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. <br /> [[File:矮化基因作用]]In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172677 2014-05-26T04:48:50Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. <br /> [[File:矮化基因的作用]]In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172675 2014-05-26T04:47:07Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. <br /> [[File:矮化基因作用.jpg]]<br /> In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172673 2014-05-26T04:46:00Z

<p>Canghai91: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. <br /> [[File:矮化基因作用.jpg|right|thumb|150px|]]<br /> In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172671 2014-05-26T04:37:59Z

<p>Canghai91: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:%E9%A9%BB%E7%A9%97%E5%AF%B9%E6%AF%94.JPG&diff=172665 2014-05-26T04:27:56Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:%E8%8C%8E%E7%A7%86%E5%AF%B9%E6%AF%94.JPG&diff=172664 2014-05-26T04:27:41Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:%E7%9F%AE%E5%8C%96%E5%9F%BA%E5%9B%A0%E4%BD%9C%E7%94%A8.JPG&diff=172663 2014-05-26T04:27:20Z

<p>Canghai91: </p> <hr /> <div></div>

Canghai91 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172647 2014-05-26T03:40:18Z

<p>Canghai91: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Canghai91