RiceWiki - User contributions [en]

Os02g0570400

2017-06-02T04:37:30Z

Caojiabao: /* Labs working on this gene */

The rice '''''Os02g0570400''''' was reported as '''''DTC1''''' in 2016 <ref name="ref1" /> by researchers from China and Korea.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0570400''''' '''''<=>''''' '''''DTC1'''''
===Function===
*'''''DTC1''''' is a key regulator for tapetum PCD by inhibiting ROS-scavenging activity.
===Phenotypic analysis===
*Mutants defective in '''''DTC1''''' exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility.
===Expression===
*'''''DTC1''''' gene is preferentially expressed in the tapetal cells during early anther development.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Department of Genetic Engineering and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea(J.Y., S.M., Y.-S.L., K.-H.J., G.A.)
*State Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (L.Z, W.L., D.Z.)

==References==
<references>
* <ref name="ref1">
Yi J, Moon S, Lee YS, Zhu L, Liang W, Zhang D, Jung KH, An G. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol. 2016 Mar;170(3):1611-23. doi: 10.1104/pp.15.01561. Epub 2015 Dec 23. PubMed PMID: 26697896; PubMed Central PMCID: PMC4775127.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0570400

2017-06-02T04:36:58Z

Caojiabao:

The rice '''''Os02g0570400''''' was reported as '''''DTC1''''' in 2016 <ref name="ref1" /> by researchers from China and Korea.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0570400''''' '''''<=>''''' '''''DTC1'''''
===Function===
*'''''DTC1''''' is a key regulator for tapetum PCD by inhibiting ROS-scavenging activity.
===Phenotypic analysis===
*Mutants defective in '''''DTC1''''' exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility.
===Expression===
*'''''DTC1''''' gene is preferentially expressed in the tapetal cells during early anther development.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Department of Genetic Engineering and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea
(J.Y., S.M., Y.-S.L., K.-H.J., G.A.)
*State Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (L.Z, W.L., D.Z.)

==References==
<references>
* <ref name="ref1">
Yi J, Moon S, Lee YS, Zhu L, Liang W, Zhang D, Jung KH, An G. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol. 2016 Mar;170(3):1611-23. doi: 10.1104/pp.15.01561. Epub 2015 Dec 23. PubMed PMID: 26697896; PubMed Central PMCID: PMC4775127.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0570400

2017-06-02T03:51:37Z

Caojiabao:

The rice '''''Os02g0570400''''' was reported as '''''DTC1''''' in 2016 <ref name="ref1" /> by researchers from China and Korea.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0570400''''' '''''<=>''''' '''''DTC1'''''
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Department of Genetic Engineering and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea
(J.Y., S.M., Y.-S.L., K.-H.J., G.A.)
*State Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (L.Z, W.L., D.Z.)

==References==
<references>
* <ref name="ref1">
Yi J, Moon S, Lee YS, Zhu L, Liang W, Zhang D, Jung KH, An G. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol. 2016 Mar;170(3):1611-23. doi: 10.1104/pp.15.01561. Epub 2015 Dec 23. PubMed PMID: 26697896; PubMed Central PMCID: PMC4775127.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os10g0463800

2017-06-02T03:41:59Z

Caojiabao:

The rice '''''Os10g0463800''''' was reported as '''''FLO7''''' in 2015 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os10g0463800''''' '''''<=>''''' '''''FLO7'''''
===Function===
*'''''FLO7''''' as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice.

===Phenotypic analysis===
*Consistent with the phenotypic alternation in '''''flo7''''' endosperm, the '''''flo7''''' mutant had reduced amylose content and seriously disrupted amylopectin structure only in the peripheral endosperm.

===Expression===
*'''''FLO7''''' gene was expressed ubiquitously but exhibited a specific expression in the endosperm periphery.

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China
*National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
*College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, PR China

==References==
<references>
* <ref name="ref1">
Zhang L, Ren Y, Lu B, Yang C, Feng Z, Liu Z, Chen J, Ma W, Wang Y, Yu X, Wang Y, Zhang W, Wang Y, Liu S, Wu F, Zhang X, Guo X, Bao Y, Jiang L, Wan J. FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice. J Exp Bot. 2016 Feb;67(3):633-47. doi: 10.1093/jxb/erv469. Epub 2015 Nov 24. PubMed PMID: 26608643; PubMed Central PMCID: PMC4737065.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Os05g0204600

2017-06-02T03:27:09Z

Caojiabao:

The rice '''''Os05g0204600''''' was reported as '''''OsBBX14''''' in 2016 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os05g0204600''''' '''''<=>''''' '''''OsBBX14''''' '''''BBX14'''''
===Function===
*'''''OsBBX14''''' regulates heading date differently under LD and SD conditions.

===Phenotypic analysis===
*'''''OsBBX14'''''-overexpression (OsBBX14-OX) lines exhibited delayed heading date under long-day (LD) and short-day (SD) conditions, whereas RNAi lines of OsBBX14 lines had similar heading dates to the WT.

===Expression===
*'''''OsBBX14''''' is highly expressed in flag leaf blades.
*'''''OsBBX14''''' expression shows a diurnal rhythm under photoperiodic conditions and subsequent continuous white light.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Shandong Rice Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, PR China
*College of Life Science, Shandong Normal University, Jinan 250014, PR China
*Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing 100190, PR China

==References==
<references>
* <ref name="ref1">
Bai B, Zhao J, Li Y, Zhang F, Zhou J, Chen F, Xie X. OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice. Plant Sci. 2016 Jun;247:25-34. doi: 10.1016/j.plantsci.2016.02.017. Epub 2016 Feb 27. PubMed PMID: 27095397.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Os04g0569100

2017-06-02T03:16:07Z

Caojiabao:

The rice '''''Os04g0569100''''' was reported as '''''Roc4''''' in 2016 <ref name="ref1" /> by researchers from China and Korea.
==Annotated Information==
===Gene Symbol===
*'''''Os04g0569100''''' '''''<=>''''' '''''GL2-4''''' '''''Roc4''''' '''''Roc4(t)'''''

===Function===
*'''''Roc4''''' regulates flowering time mainly through Ghd7.
*'''''Roc4''''' is an LD-preferential flowering enhancer that functions downstream of phytochromes and OsGI, but upstream of Ghd7.

===Expression===
*Expression of Rice outermost cell-specific gene 4 ('''''Roc4'''''), encoding a homeodomain Leu-zipper class IV family protein, was significantly increased.

===Phenotypic analysis===
*constitutive overexpression of '''''Roc4''''' in‘Dongjin’ japonica rice, which carries active Ghd7, also caused LD-preferential early flowering, its overexpression in ‘Longjing27 rice, which is defective in functional Ghd7, did not produce the same result.

You can also add sub-section(s) at will.

==Labs working on this gene==

*Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Republic of Korea
*Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, Republic of Korea
*The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People’s Republic of China

==References==
<references>
* <ref name="ref1">
Wei J, Choi H, Jin P, Wu Y, Yoon J, Lee YS, Quan T, An G. GL2-type homeobox
gene Roc4 in rice promotes flowering time preferentially under long days by
repressing Ghd7. Plant Sci. 2016 Nov;252:133-143. doi:
10.1016/j.plantsci.2016.07.012. Epub 2016 Jul 21. PubMed PMID: 27717449.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os06g0487900

2017-06-02T03:11:35Z

Caojiabao:

The rice '''''Os06g0487900''''' was reported as '''''OsOTS1''''' in 2016 <ref name="ref1" /> by researchers from United Kingdom.

==Annotated Information==
*'''''Os06g0487900''''' '''''<=>''''' '''''OsOTS1''''' '''''OTS1'''''
===Function===
*'''''OsOTS1''''' is nuclear localized indicating a direct requirement of OsOTS1-dependent deSUMOylation activity in rice nuclei for salt tolerance.

===Phenotypic analysis===
*'''''OsOTS'''''-RNAi rice plants accumulate high levels of SUMOconjugated proteins during salt stress and are highly salt sensitive; however, in non-salt conditions, they are developmentally indistinguishable from wild-type plants.
*Transgenic rice plants overexpressing '''''OsOTS1''''' have increased salt tolerance and a concomitant reduction in the levels of SUMOylated proteins.

You can also add sub-section(s) at will.

==Labs working on this gene==
*School of Biological and Biomedical Sciences, University of Durham, Durham DH1 3LE, United Kingdom

==References==
<references>
* <ref name="ref1">
Srivastava AK, Zhang C, Yates G, Bailey M, Brown A, Sadanandom A. SUMO Is a Critical Regulator of Salt Stress Responses in Rice. Plant Physiol. 2016 Apr;170(4):2378-91. doi: 10.1104/pp.15.01530. Epub 2016 Feb 11. PubMed PMID: 26869703; PubMed Central PMCID: PMC4825142.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Os07g0163500

2017-06-02T02:58:11Z

Caojiabao:

The rice '''''Os07g0163500''''' was reported as '''''OsValRS2''''' in 2016 <ref name="ref1" /> by researchers from China and Pennsylvania.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0163500''''' '''''<=>''''' '''''OsValRS2''''' '''''ValRS2'''''
===Function===
*'''''OsValRS2''''' plays an essential role in chloroplast development and regulating chloroplast ribosome biogenesis.
===Phenotypic analysis===
*A single base change in '''''OsValRS2''''' caused virescent to albino phenotypes in seedlings and white panicles at heading.

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China
*National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences,
Beijing 100081, PR China
*Department of Biology, Wilkes University, Wilkes-Barre, Pennsylvania 18766

==References==
<references>
* <ref name="ref1">
Wang Y, Wang C, Zheng M, Lyu J, Xu Y, Li X, Niu M, Long W, Wang D, Wang H, Terzaghi W, Wang Y, Wan J. WHITE PANICLE1, a Val-tRNA Synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development. Plant Physiol. 2016 Apr;170(4):2110-23. doi: 10.1104/pp.15.01949. Epub 2016 Feb 2. PubMed PMID: 26839129; PubMed Central PMCID: PMC4825129.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os07g0163500

2017-06-02T02:57:52Z

Caojiabao:

The rice '''''Os07g0163500''''' was reported as '''''OsValRS2''''' in 2016 <ref name="ref1" /> by researchers from China and Pennsylvania.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0163500''''' '''''<=>''''' '''''OsValRS2''''' '''''ValRS2'''''
===Function===
*'''''OsValRS2''''' plays an essential role in chloroplast development and regulating chloroplast ribosome biogenesis.
===Phenotypic analysis===
*A single base change in '''''OsValRS2''''' caused virescent to albino phenotypes in seedlings and white panicles at heading.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China
*National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences,
Beijing 100081, PR China
*Department of Biology, Wilkes University, Wilkes-Barre, Pennsylvania 18766

==References==
<references>
* <ref name="ref1">
Wang Y, Wang C, Zheng M, Lyu J, Xu Y, Li X, Niu M, Long W, Wang D, Wang H, Terzaghi W, Wang Y, Wan J. WHITE PANICLE1, a Val-tRNA Synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development. Plant Physiol. 2016 Apr;170(4):2110-23. doi: 10.1104/pp.15.01949. Epub 2016 Feb 2. PubMed PMID: 26839129; PubMed Central PMCID: PMC4825129.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os11g0167800

2017-06-02T02:53:12Z

Caojiabao:

The rice '''''Os11g0167800''''' was reported as '''''ASR5''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os11g0167800''''' '''''<=>''''' '''''ASR5'''''
===Function===
*'''''ASR5''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing of ''''''ASR5''''' present a non-transformed phenotype in response to Al because of the induction of ASR1.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
==Structured Information==

Os02g0543000

2017-06-02T02:44:58Z

Caojiabao: /* Phenotypic analysis */

The rice '''''Os02g0543000''''' was reported as '''''ASR1''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0543000''''' '''''<=>''''' '''''ASR1'''''
===Function===
*'''''ASR1''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing of ASR5 present a non-transformed phenotype in response to Al because of the induction of '''''ASR1'''''.
*'''''ASR1''''' has the same sub-cellular localization as ASR5, binds to ASR5 cis-regulatory el-ements, regulates ASR5 regulated genes in a non-preferentialmanner and might replace ASR5 under certain conditions.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0543000

2017-06-02T02:44:45Z

Caojiabao: /* Phenotypic analysis */

The rice '''''Os02g0543000''''' was reported as '''''ASR1''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0543000''''' '''''<=>''''' '''''ASR1'''''
===Function===
*'''''ASR1''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing ofASR5 present a non-transformed phenotype in response to Al because of the induction of '''''ASR1'''''.
*'''''ASR1''''' has the same sub-cellular localization as ASR5, binds to ASR5 cis-regulatory el-ements, regulates ASR5 regulated genes in a non-preferentialmanner and might replace ASR5 under certain conditions.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os11g0167800

2017-06-02T02:44:20Z

Caojiabao:

The rice '''''Os02g0543000''''' was reported as '''''ASR5''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0543000''''' '''''<=>''''' '''''ASR5'''''
===Function===
*'''''ASR5''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing of ''''''ASR5''''' present a non-transformed phenotype in response to Al because of the induction of ASR1.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
==Structured Information==

Os02g0543000

2017-06-02T02:43:21Z

Caojiabao:

The rice '''''Os02g0543000''''' was reported as '''''ASR1''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0543000''''' '''''<=>''''' '''''ASR1'''''
===Function===
*'''''ASR1''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing ofASR5 present a non-transformed phenotype in response to Al because of the induction of '''''ASR1'''''.
*''''''ASR1''''' has the same sub-cellular localization as ASR5, binds to ASR5 cis-regulatory el-ements, regulates ASR5 regulated genes in a non-preferentialmanner and might replace ASR5 under certain conditions.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0543000

2017-06-02T02:37:53Z

Caojiabao:

The rice '''''Os02g0543000''''' was reported as '''''ASR1''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0543000''''' '''''<=>''''' '''''ASR1'''''
===Function===
*'''''ASR1''''' and '''''ASR5''''' act in concert andcomplementarily to regulate gene expression in response to Al.

===Phenotypic analysis===
*Plants with artiﬁcial microRNA silencing ofASR5 present a non-transformed phenotype in response to Al because of the induction of '''''ASR1'''''.
*''''''ASR1''''' has the same sub-cellular localization as ASR5, binds to ASR5 cis-regulatory el-ements, regulates ASR5 regulated genes in a non-preferentialmanner and might replace ASR5 under certain conditions.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
==References==
<references>
* <ref name="ref1">
Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os05g0497600

2017-06-02T02:24:40Z

Caojiabao:

The rice '''''Os05g0497600''''' was reported as '''''OsAir1''''' in 2066 <ref name="ref1" /> by researchers from South Korea.
==Annotated Information==
===Gene Symbol===
*'''''Os05g0497600''''' '''''<=>''''' '''''OsAir1''''' '''''Air1'''''
===Function===
*In a network-based analysis, '''''OsAIR1''''' was found significantly enriched gene ontology (GO) functions, which included ribonucleoprotein complexes such as ribosomes, suggesting that the function of OsAIR1 are related to translation.

===Expression===
*'''''OsAIR1''''' expression was induced under abiotic stress conditions, including drought, salt, heat, and As exposure.
*Within the cell, the expression of this gene was found to be localized to the vacuole.

===Phenotypic analysis===
*Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that '''''OsAIR1''''' may positively regulate post-germination plant growth under stress conditions.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea
==References==
<references>
* <ref name="ref1">
Hwang SG, Park HM, Han AR, Jang CS. Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression. J Plant Physiol. 2016 Feb 1;191:140-8. doi: 10.1016/j.jplph.2015.12.010. Epub 2016 Jan 6. PubMed PMID:26788958.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 05]]

Os02g0202400

2017-05-27T08:50:40Z

Caojiabao:

The rice '''''Os02g0202400''''' was reported as '''''OsBT1''''' in 2016 <ref name="ref1" /> by researchers from India and Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0202400''''' '''''<=>''''' '''''OsBT1''''' '''''BT1'''''
===Function===
*Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the '''''BRITTLE1(BT1)''''' adenylate transporter(OsBt1) gene.

===Phenotypic analysis===
*ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
*Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
*Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)

==References==
<references>
* <ref name="ref1">
Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0766700

2017-05-27T08:30:02Z

Caojiabao:

The rice '''''Os02g0766700''''' was reported as '''''OsbZIP23''''' in 2016 <ref name="ref1" /> by researchers from India.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0766700''''' '''''<=>''''' '''''OsbZIP23''''' '''''bZIP23'''''
===Function===
*'''''OsbZIP23''''' is a positive transcriptional-regulator of the ABA-signaling pathway.
*Enhanced gene expression rather than natural polymorphism in coding sequence of '''''OsbZIP23''''' is accountable for improved drought tolerance and yield performance in rice genotypes.

===Phenotypic analysis===
*Analyses of the coding DNA sequence (CDS) of the cloned '''''OsbZIP23''''' gene revealed single nucleotide polymorphism at four places and a 15-nucleotide deletion at one place.
*The overexpression of any of the two polymorphic forms(1083 bp and 1068 bp CDS) of '''''OsbZIP23''''' improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants.

===Expression===
*The single-copy '''''OsbZIP23''''' gene is expressed at relatively higher level in leaf tissues of drought-tolerant genotypes, and its abundance is more in reproductive stage.

===Evolution===

You can also add sub-section(s) at will.

==Labs working on this gene==
*Adv. Lab. for Plant Genetic Engineering, Advanced Technology Development Center, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
*Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India

==References==
<references>
* <ref name="ref1">
Dey A, Samanta MK, Gayen S, Sen SK, Maiti MK. Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS One. 2016 Mar 9;11(3):e0150763. doi: 10.1371/journal.pone.0150763. eCollection 2016. PubMed PMID: 26959651; PubMed Central PMCID: PMC4784890.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0766700

2017-05-27T08:29:31Z

Caojiabao:

The rice '''''Os02g0766700''''' was reported as '''''OsbZIP23''''' in 2016 <ref name="ref1" /> by researchers from India.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0187800''''' '''''<=>''''' '''''OsbZIP23''''' '''''bZIP23'''''
===Function===
*'''''OsbZIP23''''' is a positive transcriptional-regulator of the ABA-signaling pathway.
*Enhanced gene expression rather than natural polymorphism in coding sequence of '''''OsbZIP23''''' is accountable for improved drought tolerance and yield performance in rice genotypes.

===Phenotypic analysis===
*Analyses of the coding DNA sequence (CDS) of the cloned '''''OsbZIP23''''' gene revealed single nucleotide polymorphism at four places and a 15-nucleotide deletion at one place.
*The overexpression of any of the two polymorphic forms(1083 bp and 1068 bp CDS) of '''''OsbZIP23''''' improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants.

===Expression===
*The single-copy '''''OsbZIP23''''' gene is expressed at relatively higher level in leaf tissues of drought-tolerant genotypes, and its abundance is more in reproductive stage.

===Evolution===

You can also add sub-section(s) at will.

==Labs working on this gene==
*Adv. Lab. for Plant Genetic Engineering, Advanced Technology Development Center, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
*Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India

==References==
<references>
* <ref name="ref1">
Dey A, Samanta MK, Gayen S, Sen SK, Maiti MK. Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS One. 2016 Mar 9;11(3):e0150763. doi: 10.1371/journal.pone.0150763. eCollection 2016. PubMed PMID: 26959651; PubMed Central PMCID: PMC4784890.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os10g0575000

2017-05-27T08:11:11Z

Caojiabao: /* Function */

The rice '''Os10g0575000''' was reported as '''''OsMYC2''''' in 2016 <ref name="ref1" /> by researchers from the Japan. It is a member of bHLH transcription factor gene family.

==Annotated Information==
===Gene Symbol===
*'''''Os10g0575000''''' '''''<=>''''' '''''OsbHLH009''''' '''''OsMYC2'''''

===Function===
*'''''OsMYC2''''', a JAZ-interacting transcription factor in rice (Oryza sativa L.), plays an important role in the resistance response against rice bacterial blight, which is one of the most serious diseases in rice, caused by Xanthomonas oryzae pv. oryzae (Xoo).
*'''''OsMYC2''''' interacted with some OsJAZ proteins in a JAZinteracting domain (JID)-dependent manner.
*'''''OsMYC2''''' up-regulated OsJAZ10 as well as many other defense-related genes.
*'''''OsMYC2''''' selectively bound to the G-box-like motif of the OsJAZ10 promoter in vivo and regulated the expression of early JA-responsive genes, but not of late JA-responsive genes.
*'''''OsMYC2''''' acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice.

===Phenotypic analysis===
*Transgenic rice plants overexpressing '''''OsMYC2''''' exhibited aJA-hypersensitive phenotype and were more resistant to Xoo

You can also add sub-section(s) at will.

==Labs working on this gene==
* Plant Genome and Resource Research Center, Faculty of Agriculture, Kagawa University, Miki, Kagawa, 761-0795 Japan
==References==
<references>
* <ref name="ref1">
Uji Y, Taniguchi S, Tamaoki D, Shishido H, Akimitsu K, Gomi K. Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice. Plant Cell Physiol. 2016 Sep;57(9):1814-27. doi: 10.1093/pcp/pcw101. Epub 2016 May 19. PubMed PMID: 27335352.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Os10g0575000

2017-05-27T08:10:09Z

Caojiabao:

The rice '''Os10g0575000''' was reported as '''''OsMYC2''''' in 2016 <ref name="ref1" /> by researchers from the Japan. It is a member of bHLH transcription factor gene family.

==Annotated Information==
===Gene Symbol===
*'''''Os10g0575000''''' '''''<=>''''' '''''OsbHLH009''''' '''''OsMYC2'''''

===Function===
*'''''OsMYC2''''', a JAZ-interacting transcription factor in rice (Oryza sativa L.), plays an important role in the resistance response against rice bacterial blight, which is one of the most serious diseases in rice, caused by Xanthomonas oryzae pv. oryzae (Xoo).
*'''''OsMYC2''''' interacted with some OsJAZ proteins in a JAZinteracting domain (JID)-dependent manner.
*'''''OsMYC2''''' up-regulated OsJAZ10 as well as many other defense-related genes. OsMYC2 selectively bound to the G-box-like motif of the OsJAZ10 promoter in vivo and regulated the expression of early JA-responsive genes, but not of late JA-responsive genes.
*'''''OsMYC2''''' acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice.

===Phenotypic analysis===
*Transgenic rice plants overexpressing '''''OsMYC2''''' exhibited aJA-hypersensitive phenotype and were more resistant to Xoo

You can also add sub-section(s) at will.

==Labs working on this gene==
* Plant Genome and Resource Research Center, Faculty of Agriculture, Kagawa University, Miki, Kagawa, 761-0795 Japan
==References==
<references>
* <ref name="ref1">
Uji Y, Taniguchi S, Tamaoki D, Shishido H, Akimitsu K, Gomi K. Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice. Plant Cell Physiol. 2016 Sep;57(9):1814-27. doi: 10.1093/pcp/pcw101. Epub 2016 May 19. PubMed PMID: 27335352.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Os10g0575000

2017-05-27T08:08:28Z

Caojiabao:

The rice '''Os10g0575000''' was reported as '''''OsMYC2''''' in 2006 <ref name="ref1" /> by researchers from the China. It is a member of bHLH transcription factor gene family.

==Annotated Information==
===Gene Symbol===
*'''''Os10g0575000''''' '''''<=>''''' '''''OsbHLH009''''' '''''OsMYC2'''''

===Function===
*'''''OsMYC2''''', a JAZ-interacting transcription factor in rice (Oryza sativa L.), plays an important role in the resistance response against rice bacterial blight, which is one of the most serious diseases in rice, caused by Xanthomonas oryzae pv. oryzae (Xoo).
*'''''OsMYC2''''' interacted with some OsJAZ proteins in a JAZinteracting domain (JID)-dependent manner.
*'''''OsMYC2''''' up-regulated OsJAZ10 as well as many other defense-related genes. OsMYC2 selectively bound to the G-box-like motif of the OsJAZ10 promoter in vivo and regulated the expression of early JA-responsive genes, but not of late JA-responsive genes.
*'''''OsMYC2''''' acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice.

===Phenotypic analysis===
*Transgenic rice plants overexpressing '''''OsMYC2''''' exhibited aJA-hypersensitive phenotype and were more resistant to Xoo

You can also add sub-section(s) at will.

==Labs working on this gene==
* Plant Genome and Resource Research Center, Faculty of Agriculture, Kagawa University, Miki, Kagawa, 761-0795 Japan
==References==
<references>
Uji Y, Taniguchi S, Tamaoki D, Shishido H, Akimitsu K, Gomi K. Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice. Plant Cell Physiol. 2016 Sep;57(9):1814-27. doi: 10.1093/pcp/pcw101. Epub 2016 May 19. PubMed PMID: 27335352.

</ref>
* <ref name="ref3">
Feller A, Machemer K, Braun EL, Grotewold E. Evolutionary and comparative
analysis of MYB and bHLH plant transcription factors. Plant J. 2011
Apr;66(1):94-116. doi: 10.1111/j.1365-313X.2010.04459.x. Review. PubMed PMID:
21443626.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Os01g0752500

2017-05-27T07:56:17Z

Caojiabao: /* Function */

The rice '''''Os01g0752500''''' was reported as '''''OsERF922 ''''' in 2016 <ref name="ref1" /> by researchers from china.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0752500''''' '''''<=>''''' '''''OsERF922''''' '''''ERF922'''''

===Function===
*The ERF Transcription Factor Gene '''''OsERF922'''''

===Phenotypic analysis===
*All of the C-ERF922-induced allele mutations were transmitted to subsequent generations

You can also add sub-section(s) at will.

==Labs working on this gene==
*College of Agriculture, Guangxi University, Nanning, China,
*National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Institute of Crop Science, Chinese Academy of Agriculture
Sciences (CAAS), Beijing, China,
*State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou, China

==References==
<references>
* <ref name="ref1">
Wang F, Wang C, Liu P, Lei C, Hao W, Gao Y, Liu YG, Zhao K. Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922. PLoS One. 2016 Apr 26;11(4):e0154027. doi:10.1371/journal.pone.0154027. eCollection 2016. PubMed PMID: 27116122; PubMed Central PMCID: PMC4846023.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os01g0752500

2017-05-27T07:55:57Z

Caojiabao:

The rice '''''Os01g0752500''''' was reported as '''''OsERF922 ''''' in 2016 <ref name="ref1" /> by researchers from china.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0752500''''' '''''<=>''''' '''''OsERF922''''' '''''ERF922'''''

===Function===
*The ERF Transcription Factor Gene '''''OsERF922''''
===Phenotypic analysis===
*All of the C-ERF922-induced allele mutations were transmitted to subsequent generations

You can also add sub-section(s) at will.

==Labs working on this gene==
*College of Agriculture, Guangxi University, Nanning, China,
*National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Institute of Crop Science, Chinese Academy of Agriculture
Sciences (CAAS), Beijing, China,
*State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou, China

==References==
<references>
* <ref name="ref1">
Wang F, Wang C, Liu P, Lei C, Hao W, Gao Y, Liu YG, Zhao K. Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922. PLoS One. 2016 Apr 26;11(4):e0154027. doi:10.1371/journal.pone.0154027. eCollection 2016. PubMed PMID: 27116122; PubMed Central PMCID: PMC4846023.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os07g0486000

2017-05-26T03:01:50Z

Caojiabao:

The rice '''''Os07g0486000''''' was reported as '''''OsMSH4''''' in 2016 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0486000''''' '''''<=>''''' '''''OsMSH4,MSH4'''''
===Function===
*'''''OsMSH4''''' heterodimer plays a key role in regulation of crossover formation during rice meiosis by interaction with the RPA complex.

===Phenotypic analysis===
*Compared with the wild type,the '''''Osmsh4''''' mutant displayed a significant ~21.9% reduction in chiasma frequency, which followed a Poisson distribution,suggesting that class I crossover formation in the mutant was impaired.

===Expression===
*'''''OsMSH4''''' was preferentially expressed in meiocytes during their meiosis, indicating a critical role in gametogenesis.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China
*National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China

==References==
<references>
* <ref name="ref1">
Wang C, Wang Y, Cheng Z, Zhao Z, Chen J, Sheng P, Yu Y, Ma W, Duan E, Wu F, Liu L, Qin R, Zhang X, Guo X, Wang J, Jiang L, Wan J. The role of OsMSH4 in male and female gamete development in rice meiosis. J Exp Bot. 2016 Mar;67(5):1447-59.doi: 10.1093/jxb/erv540. Epub 2015 Dec 28. PubMed PMID: 26712826; PubMed Central PMCID: PMC4762385.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os04g0656100

2017-05-26T02:49:01Z

Caojiabao:

The rice '''''Os04g0656100''''' was reported as '''''OSA7''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==

===Gene Symbol===
*'''''Os04g0656100''''' '''''<=>''''' '''''OSA7''''' '''''A7'''''
===Function===
*Loss of function of '''''OSA7''''' resulted in partial insensitivity to blue light(BL).

===Expression===
*'''''OSA7''''' is preferentially expressed among the OSA genes in guard cells

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602 Japan
*Institute for Advanced Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Tsukuba, 305-8602 Japan
*Center of Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
*Bioscience Center, Nagoya University, Chikusa, Nagoya, 464-8601 Japan
*Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602 Japan

==References==
<references>
* <ref name="ref1">
Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Feng Ma J, Ashikari M, Kinoshita T. Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice. Plant Cell Physiol. 2016 Jun;57(6):1220-30. doi: 10.1093/pcp/pcw070. Epub 2016 Apr 5. PubMed PMID: 27048369; PubMed Central PMCID: PMC4904443.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os08g0556900

2017-05-26T02:48:10Z

Caojiabao:

The rice '''''Os08g0556900''''' was reported as '''''OsSAG12-2''''' in 2016 <ref name="ref1" /> by researchers from India.

==Annotated Information==
===Gene Symbol===
*'''''Os08g0556900''''' '''''<=>''''' '''''OsSAG12-2''''' '''''SAG12-2'''''
===Function===
*'''''OsSAG12-2''''' codes for a functional protease that negatively regulates stress-induced cell death in rice.

===Phenotypic analysis===
*Dark-induced senescence activates '''''OsSAG12-2''''' expression.
*Down-regulation of '''''OsSAG12-2''''' in the transgenic artificial miRNA lines results in enhanced salt- and UV-induced cell death, even though it does not affect cell viability in the stress-free condition.

You can also add sub-section(s) at will.

==Labs working on this gene==
*School of Life Sciences, Jawaharlal Nehru University, New Delhi 110 067, India

==References==
<references>
* <ref name="ref1">
Singh S, Singh A, Nandi AK. The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death. J Biosci. 2016 Sep;41(3):445-53. PubMed PMID: 27581936.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Os05g0488800

2017-05-26T02:46:46Z

Caojiabao:

The rice '''''Os05g0488800''''' was reported as '''''SIRP1''''' in 2016 <ref name="ref1" /> by researchers from Korea.

==Annotated Information==
===Gene Symbol===
*'''''Os05g0488800''''' '''''<=>''''' '''''SIRP1''''' '''''SIRP1'''''
===Function===
*'''''OsSIRP1''''' acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system.

===Phenotypic analysis===
*Poly-ubiquitinated products of '''''OsSIRP1''''' were investigated via an in vitro ubiquitination assay.35S:OsSIRP1-EYFP was distributed in the cytosol of untreated and salt-treated rice protoplasts.
*Heterogeneous overexpression of '''''OsSIRP1''''' in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth.

===Expression===
*Transcript levels of '''''OsSIRP1''''' in rice leaves after various stress treatments, including salt, heat, drought and hormone abscisic acid (ABA), were observed.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, Korea
*Agriculture and Life Sciences Research Institute, Kangwon National University, Chuncheon 200-713, Korea

==References==
<references>
* <ref name="ref1">
Hwang SG, Kim JJ, Lim SD, Park YC, Moon JC, Jang CS. Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress. Physiol Plant. 2016 Oct;158(2):168-79. doi: 10.1111/ppl.12459. Epub 2016 Jun 6. PubMed PMID:27118216.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Os02g0673700

2017-05-26T02:45:22Z

Caojiabao: /* Phenotypic analysis */

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42-,Cl-,PO43- and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0673700

2017-05-26T02:44:49Z

Caojiabao: /* Phenotypic analysis */

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42-,Cl-,PO43- and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0673700

2017-05-26T02:42:31Z

Caojiabao:

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42-,Cl-,PO43- and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0673700

2017-05-26T02:41:54Z

Caojiabao:

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO4^2-,Cl-,PO4^3- and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0673700

2017-05-26T02:40:27Z

Caojiabao:

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42,Cl,PO43and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os04g0429100

2017-05-26T02:38:35Z

Caojiabao:

The rice '''''Os04g0429100''''' was reported as '''''SDG708''''' in 2015 <ref name="ref1" /> by researchers from China and France.

==Annotated Information==
===Gene Symbol===
*'''''Os04g0429100''''' '''''<=>''''' '''''SDG708'''''

===Function===
'''''SDG708''''' is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion.

===Phenotypic analysis===
*Compared with the wild-type, '''''SDG708'''''-knockdown rice mutants displayed a late-flowering phenotype under both long-day and short-day conditions because of the down-regulation of the key flowering regulatory genes Heading date 3a (Hd3a), RICE FLOWERING LOCUS T1(RFT1), and Early heading date 1 (Ehd1).
*Chromatin immunoprecipitation experiments indicated that H3K36me1, H3K36me2, and H3K36me3 levels were reduced at these loci in '''''SDG708'''''-deficient plants.
*Knockdown of '''''SDG708''''' led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice.

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, International Associated Laboratory of CNRS-Fudan-HUNAU on Plant Epigenome Research, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200433,China *State Key Laboratory of Genetics Engineering, MOE Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai 200433, China
*CNRS, Institut de Biologie Moleculaire des Plantes, Universite de Strasbourg, Strasbourg, France

==References==
<references>
* <ref name="ref1">
Liu B, Wei G, Shi J, Jin J, Shen T, Ni T, Shen WH, Yu Y, Dong A. SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa). New Phytol. 2016 Apr;210(2):577-88. doi:10.1111/nph.13768. Epub 2015 Dec 7. PubMed PMID: 26639303.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os04g0429100

2017-05-26T02:37:33Z

Caojiabao:

The rice '''''Os04g0429100''''' was reported as '''''SDG708''''' in 2015 <ref name="ref1" /> by researchers from China and France.

==Annotated Information==
===Gene Symbol===
*'''''Os04g0429100''''' '''''<=>''''' '''''SDG708'''''

===Function===
'''''SDG708''''' is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion.

===Phenotypic analysis===
*Compared with the wild-type, SDG708-knockdown rice mutants displayed a late-flowering phenotype under both long-day and short-day conditions because of the down-regulation of the key flowering regulatory genes Heading date 3a (Hd3a), RICE FLOWERING LOCUS T1(RFT1), and Early heading date 1 (Ehd1).
*Chromatin immunoprecipitation experiments indicated that H3K36me1, H3K36me2, and H3K36me3 levels were reduced at these loci in SDG708-deficient plants.
*Knockdown of '''''SDG708''''' led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice.

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, International Associated Laboratory of CNRS-Fudan-HUNAU on Plant Epigenome Research, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200433,China *State Key Laboratory of Genetics Engineering, MOE Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai 200433, China
*CNRS, Institut de Biologie Moleculaire des Plantes, Universite de Strasbourg, Strasbourg, France

==References==
<references>
* <ref name="ref1">
Liu B, Wei G, Shi J, Jin J, Shen T, Ni T, Shen WH, Yu Y, Dong A. SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa). New Phytol. 2016 Apr;210(2):577-88. doi:10.1111/nph.13768. Epub 2015 Dec 7. PubMed PMID: 26639303.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os02g0673700

2017-05-26T02:23:12Z

Caojiabao:

The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
===Function===
*Transcription factor encoding gene RDD1 plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
*RDD1 can contribute to the increased grain productivity of rice via inducing theefﬁcient uptake and accumulation of various nutrient ions.

===Phenotypic analysis===
*The overexpression of RDD1induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42,Cl,PO43and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
*The overexpression of RDD1 increased nitrogen responsiveness and grain productiv-ity.

===Expression===
*An RDD1transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive RDD1 expression.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

==References==
<references>
* <ref name="ref1">
Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os04g0656100

2017-05-25T08:16:02Z

Caojiabao: /* Function */

The rice '''''Os04g0656100''''' was reported as '''''OSA7''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==

===Gene Symbol===
*'''''Os04g0656100''''' '''''<=>''''' '''''OSA7''''' '''''A7'''''
===Function===
*Loss of function of OSA7 resulted in partial insensitivity to blue light(BL).

===Expression===
*OSA7 is preferentially expressed among the OSA genes in guard cells

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602 Japan
*Institute for Advanced Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Tsukuba, 305-8602 Japan
*Center of Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
*Bioscience Center, Nagoya University, Chikusa, Nagoya, 464-8601 Japan
*Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602 Japan

==References==
<references>
* <ref name="ref1">
Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Feng Ma J, Ashikari M, Kinoshita T. Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice. Plant Cell Physiol. 2016 Jun;57(6):1220-30. doi: 10.1093/pcp/pcw070. Epub 2016 Apr 5. PubMed PMID: 27048369; PubMed Central PMCID: PMC4904443.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os04g0656100

2017-05-25T08:15:46Z

Caojiabao: /* Function */

The rice '''''Os04g0656100''''' was reported as '''''OSA7''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==

===Gene Symbol===
*'''''Os04g0656100''''' '''''<=>''''' '''''OSA7''''' '''''A7'''''
===Function===
Loss of function of OSA7 resulted in partial insensitivity to blue light(BL).

===Expression===
*OSA7 is preferentially expressed among the OSA genes in guard cells

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602 Japan
*Institute for Advanced Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Tsukuba, 305-8602 Japan
*Center of Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
*Bioscience Center, Nagoya University, Chikusa, Nagoya, 464-8601 Japan
*Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602 Japan

==References==
<references>
* <ref name="ref1">
Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Feng Ma J, Ashikari M, Kinoshita T. Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice. Plant Cell Physiol. 2016 Jun;57(6):1220-30. doi: 10.1093/pcp/pcw070. Epub 2016 Apr 5. PubMed PMID: 27048369; PubMed Central PMCID: PMC4904443.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os04g0656100

2017-05-25T08:15:25Z

Caojiabao:

The rice '''''Os04g0656100''''' was reported as '''''OSA7''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==

===Gene Symbol===
*'''''Os04g0656100''''' '''''<=>''''' '''''OSA7''''' '''''A7'''''
===Function===
loss of function of OSA7 resulted in partial insensitivity to blue light(BL).

===Expression===
*OSA7 is preferentially expressed among the OSA genes in guard cells

You can also add sub-section(s) at will.

==Labs working on this gene==
*Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602 Japan
*Institute for Advanced Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Tsukuba, 305-8602 Japan
*Center of Gene Research, Nagoya University, Chikusa, Nagoya, 464-8602 Japan
*Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
*Bioscience Center, Nagoya University, Chikusa, Nagoya, 464-8601 Japan
*Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602 Japan

==References==
<references>
* <ref name="ref1">
Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Feng Ma J, Ashikari M, Kinoshita T. Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice. Plant Cell Physiol. 2016 Jun;57(6):1220-30. doi: 10.1093/pcp/pcw070. Epub 2016 Apr 5. PubMed PMID: 27048369; PubMed Central PMCID: PMC4904443.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Os08g0556900

2017-05-25T08:00:39Z

Caojiabao:

The rice '''''Os08g0556900''''' was reported as '''''OsSAG12-2''''' in 2016 <ref name="ref1" /> by researchers from India.

==Annotated Information==
===Gene Symbol===
*'''''Os08g0556900''''' '''''<=>''''' '''''OsSAG12-2''''' '''''SAG12-2'''''
===Function===
*OsSAG12-2 codes for a functional protease that negatively regulates stress-induced cell death in rice.

===Phenotypic analysis===
*Dark-induced senescence activates OsSAG12-2 expression.
*Down-regulation of OsSAG12-2 in the transgenic artificial miRNA lines results in enhanced salt- and UV-induced cell death, even though it does not affect cell viability in the stress-free condition.

You can also add sub-section(s) at will.

==Labs working on this gene==
*School of Life Sciences, Jawaharlal Nehru University, New Delhi 110 067, India

==References==
<references>
* <ref name="ref1">
Singh S, Singh A, Nandi AK. The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death. J Biosci. 2016 Sep;41(3):445-53. PubMed PMID: 27581936.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Os05g0488800

2017-05-25T07:48:12Z

Caojiabao:

The rice '''''Os05g0488800''''' was reported as '''''SIRP1''''' in 2016 <ref name="ref1" /> by researchers from Korea.

==Annotated Information==
===Gene Symbol===
*'''''Os05g0488800''''' '''''<=>''''' '''''SIRP1''''' '''''SIRP1'''''
===Function===
*OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system.

===Phenotypic analysis===
*Poly-ubiquitinated products of OsSIRP1 were investigated via an in vitro ubiquitination assay.35S:OsSIRP1-EYFP was distributed in the cytosol of untreated and salt-treated rice protoplasts.
*Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth.

===Expression===
*Transcript levels of OsSIRP1 in rice leaves after various stress treatments, including salt, heat, drought and hormone abscisic acid (ABA), were observed.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, Korea
*Agriculture and Life Sciences Research Institute, Kangwon National University, Chuncheon 200-713, Korea

==References==
<references>
* <ref name="ref1">
Hwang SG, Kim JJ, Lim SD, Park YC, Moon JC, Jang CS. Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress. Physiol Plant. 2016 Oct;158(2):168-79. doi: 10.1111/ppl.12459. Epub 2016 Jun 6. PubMed PMID:27118216.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Os01g0914400

2017-05-22T03:09:40Z

Caojiabao:

The rice '''''Os01g0914400''''' was reported as '''''EPFL9''''' in 2017 <ref name="ref1" /> by researchers from UK and USA.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0914400''''' '''''<=>''''' '''''EPFL9'''''
===Function===
*gene EPFL9 (Epidermal Patterning Factor like-9, a positive regulator of stomatal development in Arabidopsis) orthologue in rice.

You can also add sub-section(s) at will.

==Labs working on this gene==
*International Rice Research Institute, DAPO, 7777 Metro Manila, Philippines
*Department of Molecular Biology and Biotechnology, University of Shefeld, Shefeld S10 2TN, UK
*Department of Biology, University of North Carolinaat Chapel Hill, Chapel Hill, NC, USA
*Departamento de Biologıá Molecular de Plantas, Instituto deBiotecnologıá, Universidad Nacional Autónoma de Mexico Cuernavaca, Cuernavaca, Mexico
*Department of Animal and Plant Sciences, University of Shefeld, Shefeld S10 2TN, UK

==References==
<references>
* <ref name="ref1">
Yin X, Biswal AK, Dionora J, Perdigon KM, Balahadia CP, Mazumdar S, Chater C, Lin HC, Coe RA, Kretzschmar T, Gray JE, Quick PW, Bandyopadhyay A. CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice. Plant Cell Rep. 2017 May;36(5):745-757. doi: 10.1007/s00299-017-2118-z. Epub 2017 Mar 27. PubMed PMID: 28349358.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os10g0206800

2017-05-22T02:58:34Z

Caojiabao: /* Gene Symbol */

The rice Os10g0206800 was reported as '''''OsFRDL2''''' in 2016 by researchers from Japan. <ref name="ref1" />

==Annotated Information==
===Gene Symbol===
*'''''Os10g0206800''''' '''''<=>''''' '''''OsFRDL2,FRDL2'''''

===Function===
*OsFRDL2 is contribute to high Al tolerance is relatively small in rice.

===Expression===
*OsFRDL2 showed an efflux transport activity for citrate when it was expressed in both Xenopus oocytes and cultured tobacco cells.
*OsFRDL2 was mainly expressed in the roots and its expression was not induced by iron (Fe) deficiency, but it was rapidly up-regulated by aluminum (Al).

===Phenotypic analysis===
*Knockout of OsFRDL2 decreased Al-induced secretion of citrate from the roots, but did not affect the internal citrate concentration.
*The Al-induced inhibition of root elongation was similar between the OsFRDL2 knockout line and its wild-type rice.
*Knockout of OsFRDL2 did not affect the translocation of Fe from the roots to the shoots.
*A double mutant between osfrdl2 and osfrdl4 or osfrdl1 did not further decrease the Al-induced citrate secretion and Fe translocation compared with the single mutant.
You can also add sub-section(s) at will.

==Labs working on this gene==
*Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki,710-0046 Japan.

==References==
<references>
<ref name="ref1">
Yokosho K, Yamaji N, Fujii-Kashino M, Ma JF. Functional Analysis of a MATE
Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a
Lower Contribution to Al Tolerance in Rice. Plant Cell Physiol. 2016
May;57(5):976-85. doi: 10.1093/pcp/pcw026. Epub 2016 Feb 12. PubMed PMID:
26872836.

</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Os01g0612700

2017-05-22T02:57:04Z

Caojiabao: /* Gene Symbol */

The rice '''''Os01g0612700''''' was reported as '''''OsLOL5''''' in 2016 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0612700''''' '''''<=>''''' '''''LOL5''''' '''''OsLOL2''''' '''''OsLOL5''''' '''''OsLSD5'''''

===Function===
*'''OsLOL2''' is involved in rice growth and disease resistance.
*The '''OsLOL2''' gene is predicted to encode a polypeptide of 163 amino acids with two LSD1-like zinc Wnger domains with 74.5% identity to those of LSD1.
 
===Expression===
*Expression of '''OsLOL2''' were more resistant to rice bacterial blight, while antisense transgenic lines were less resistant to rice bacterial blight.
 
==Labs working on this gene==
*State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People’s Republic of China
*Graduate School of Chinese Academy of Sciences,Beijing 100039, People’s Republic of China
 
==References==
<references>
<ref name="ref1">
Guan QJ, Ma HY, Wang ZJ, Wang ZY, Bu QY, Liu SK. A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice. BMC Genomics. 2016 Feb 27;17:142. doi:10.1186/s12864-016-2460-5. PubMed PMID: 26920613; PubMed Central PMCID:PMC4769587.
</ref>
</references>
 

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os07g0657100

2017-05-22T02:56:40Z

Caojiabao: /* Gene Symbol */

The rice '''''Os07g0657100''''' was reported as '''''OsGly''''' in 2016 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0657100''''' '''''<=>''''' '''''OsEnS-113''''' '''''OsGLYI10'''''

===Function===
*Glyoxalase I (Gly I) is a component of the glyoxalase system which is involved in the detoxification of methylglyoxal, a byproduct of glycolysis.

===Expression===
*rice Gly I (OsGly I) was ubiquitously expressed in root, stem, leaf, leaf sheath and spikelet with varying abundance.
===Phenotypic analysis===
*OsGly I was markedly upregulated in response to NaCl, ZnCl2 and mannitol in rice seedlings.
*The OsGly I-overexpression transgenic plants performed higher seed setting rate and yield.

You can also add sub-section(s) at will.

==Labs working on this gene==
*College of Life Science, Chongqing University, Chongqing 400030, China
*Key Laboratory of Southwest Rice Biology and Genetic Breeding, Sichuan Academy of Agricultural Sciences, Rice and Sorghum Research Institute, Luzhou Branch of National Rice Improvement Center, Ministry of Agriculture, Deyang 618000, China
*School of Food Science and Engineering, Hefei University of Technology, Hefei 230009, China
*Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China

==References==
<references>
* <ref name="ref1">
Zeng Z, Xiong F, Yu X, Gong X, Luo J, Jiang Y, Kuang H, Gao B, Niu X, Liu Y. Overexpression of a glyoxalase gene, OsGly I, improves abiotic stress tolerance and grain yield in rice (Oryza sativa L.). Plant Physiol Biochem. 2016 Dec;109:62-71. doi: 10.1016/j.plaphy.2016.09.006. Epub 2016 Sep 13. PubMed PMID: 27639962.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os03g0831200

2017-05-22T02:56:11Z

Caojiabao: /* Gene Symbol */

The rice '''''Os03g0831200''''' was reported as '''''OsGATA12 ''''' in 2017 <ref name="ref1" /> by researchers from Canada.

==Annotated Information==
===Gene Symbol===
*'''''Os03g0831200''''' '''''<=>''''' '''''OsGATA12''''' '''''OsGATA12'''''

===Function===
*The down-regulation of the STAY GREEN RICE gene and in vivo repression of its promoter by OsGATA12, which suggests a transcriptional repression function for a GATA transcription factor for prolonging the onset of senescence in cereals.

===Phenotypic analysis===
*OsGATA12, whose overexpression causes increased leaf greenness, reduction of leaf and tiller number, and affects yield parameters.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Road E., Guelph, ON N1G 2W1, Canada

==References==
<references>
* <ref name="ref1">
Lu G, Casaretto JA, Ying S, Mahmood K, Liu F, Bi YM, Rothstein SJ. Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting. Plant Mol Biol. 2017 May;94(1-2):215-227. doi: 10.1007/s11103-017-0604-x. Epub 2017 Mar 24. PubMed PMID: 28342018.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Os08g0143400

2017-05-22T02:55:22Z

Caojiabao: /* Annotated Information */

The rice '''''Os08g0143400''''' was reported as '''''Hd18''''' in 2016 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os08g0143400''''' '''''<=>''''' '''''Hd18'''''
===Function===
*Hd18 acts as an accelerator in the rice-flowering pathway under both short- and long-day conditions by elevating transcription levels of Ehd1

===Phenotypic analysis===
*The Hayamasari Hd18 allele and knockdown of Hd18 gene expression delayed the flowering time of rice plants regardless of the day-length
condition.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan

==References==
<references>
* <ref name="ref1">
Shibaya T, Hori K, Ogiso-Tanaka E, Yamanouchi U, Shu K, Kitazawa N, Shomura A, Ando T, Ebana K, Wu J, Yamazaki T, Yano M. Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol. 2016 Sep;57(9):1828-38. doi:10.1093/pcp/pcw105. Epub 2016 Jun 18. PubMed PMID: 27318280.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Os05g0251400

2017-05-22T02:54:38Z

Caojiabao: /* Annotated Information */

The rice '''''Os05g0251400''''' was reported as '''''OsBVF1''''' in 2017 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os05g0251400''''' '''''<=>''''' '''''OsBVF1,BVF1'''''
===Function===
*OsBVF1 is a novel plant-conserved factor involved in meiotic recombination in rice, providing a new insight into understanding of meiotic progression regulation.

===Phenotypic analysis===
*The bvf1 male meiocytes were defective in formation of meiotic double strand break, thereby resulting in a failure of bivalent formation in diakinesis and unequal chromosome segregation in anaphase I.

===Evolution===
*The causal gene, OsBVF1, encodes a unique OmpH/coiled-coil motif-containing protein and its homologs are highly conserved in the plant kingdom and seem to be a single-copy gene in the majority of plant species

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, 510642 Guangzhou, China
*Key Laboratory of Plant Functional Genomics and Biotechnology of Guangdong Provincial Higher Education Institutions, 510642 Guangzhou, China
*College of Life Sciences, South China Agricultural University, 510642 Guangzhou, China
*State Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, 200438 Shanghai, China

==References==
<references>
* <ref name="ref1">
Zhou L, Han J, Chen Y, Wang Y, Liu YG. Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice. J Exp Bot. 2017 Mar 24. doi: 10.1093/jxb/erx077. [Epubahead of print] PubMed PMID: 28369589.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Os03g0833200

2017-05-22T02:53:01Z

Caojiabao:

The rice '''''Os03g0833200''''' was reported as '''''OsTRM13''''' in 2017 <ref name="ref1" /> by researchers from China and Australia.

==Annotated Information==
===Gene Symbol===
*'''''Os03g0833200''''' '''''<=>''''' '''''OsTRM13,TRM13'''''
===Function===
*OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.

===Phenotypic analysis===
*OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance.
*OsTRM13 complemented a yeast trm13Δ mutant, defcient in Am synthesis, and the purifed OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro.

===Expression===
*OsTRM13 transcript levels increased signifcantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus.

You can also add sub-section(s) at will.

==Labs working on this gene==
*College of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China
*Biomass and Bioenergy Research Centre, HuaZhong Agricultural University, Wuhan 430070, China
*College of Life Science, HuaZhong Agricultural University, Wuhan 430070, China
*College of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China
*School of Biosciences, University of Melbourne, Parkville 3010 VIC, Australia

==References==
<references>
* <ref name="ref1">
Wang Y, Li D, Gao J, Li X, Zhang R, Jin X, Hu Z, Zheng B, Persson S, Chen P. The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice. J Exp Bot. 2017 Mar 1;68(7):1479-1491. doi: 10.1093/jxb/erx061. PubMed PMID: 28369540.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Os05g0251400

2017-05-22T02:42:11Z

Caojiabao:

The rice '''''Os05g0251400''''' was reported as '''''OsBVF1''''' in 2017 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0187800''''' '''''<=>''''' '''''OsBVF1,BVF1'''''
===Function===
*OsBVF1 is a novel plant-conserved factor involved in meiotic recombination in rice, providing a new insight into understanding of meiotic progression regulation.

===Phenotypic analysis===
*The bvf1 male meiocytes were defective in formation of meiotic double strand break, thereby resulting in a failure of bivalent formation in diakinesis and unequal chromosome segregation in anaphase I.

===Evolution===
*The causal gene, OsBVF1, encodes a unique OmpH/coiled-coil motif-containing protein and its homologs are highly conserved in the plant kingdom and seem to be a single-copy gene in the majority of plant species

You can also add sub-section(s) at will.

==Labs working on this gene==
*State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, 510642 Guangzhou, China
*Key Laboratory of Plant Functional Genomics and Biotechnology of Guangdong Provincial Higher Education Institutions, 510642 Guangzhou, China
*College of Life Sciences, South China Agricultural University, 510642 Guangzhou, China
*State Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, 200438 Shanghai, China

==References==
<references>
* <ref name="ref1">
Zhou L, Han J, Chen Y, Wang Y, Liu YG. Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice. J Exp Bot. 2017 Mar 24. doi: 10.1093/jxb/erx077. [Epubahead of print] PubMed PMID: 28369589.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]