RiceWiki - User contributions [en]

Os03g0181500

2014-06-06T13:45:52Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

[[File:ONI1-a.jpg|frame|caption|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

Although oni1 showed organ fusions as is the case in Arabidopsisfdh, the oni1 mutants lacked a normal outermost cell layer (layer 1 or L1) and failed to maintain the shoot apical meristem (SAM). Along with the expression of ONI1in embryogenesis, defects in the SAM were also observed even at this stage. In addition,oni1had a
reduced amount of VLCFAs. Consistent with these phenotypic differences, FDH failed to complement the oni1 mutation. These results suggest that rice fatty acid elongase ONI1 has a more critical function than Arabidopsis FDH in plant development, or ONI1 has an additional function to that of FDH<ref name="ref1" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:45:00Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

[[File:ONI1-a.jpg|frame|caption|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

Although oni1 showed organ fusions as is the case in Arabidopsisfdh, the oni1 mutants lacked a normal outermost cell layer (layer 1 or L1) and failed to maintain the shoot apical meristem (SAM). Along with the expression of ONI1in embryogenesis, defects in the SAM were also observed even at this stage. In addition,oni1had a
reduced amount of VLCFAs. Consistent with these phenotypic differences, FDH failed to complement the oni1 mutation. These results suggest that rice fatty acid elongase ONI1 has a more critical function than Arabidopsis FDH in plant development, or ONI1has an additional function to that of FDH<ref name="ref1" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:44:40Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

[[File:ONI1-a.jpg|frame|caption|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

Although oni1 showed organ fusions as is the case in Arabidopsisfdh, the oni1 mutants lacked a normal outermost cell layer (layer 1 or L1) and failed to maintain the shoot apical meristem (SAM). Along with the expression of ONI1in embryogenesis, defects in the SAM were also observed even at this stage. In addition,oni1had a
reduced amount of VLCFAs. Consistent with these phenotypic differences, FDH failed to complement the oni1 mutation. These results suggest that rice fatty acid elongase ONI1 has a more critical function than Arabidopsis FDH in plant development, or ONI1has an additional function to that of FDH<ref name="ref1" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:35:06Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

[[File:ONI1-a.jpg|frame|caption|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:33:50Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

[[File:ONI1-a.jpg|right|thumb|150px|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:32:49Z

Dengfei91: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:ONI1-a.jpg|right|thumb|150px|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:24:22Z

Dengfei91: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:ONI1-a.jpg|right|thumb|150px|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

[[File:ONI1-b.jpg|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-06-06T13:22:42Z

Dengfei91: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:ONI1-a.jpg|right|thumb|150px|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

[[File:ONI1-b.jpg|left|frame|caption|"(b–k) In situ RNA hybridization ofONI1. Longitudinal sections were hybridized with the antisense probe (b–j) or control sense probe (k) forONI1. Embryos at (b) 3, (c) 4, (d) 5, (e) 7 and (f) 10 days after pollination. (g) Shoot apex of a 1-day imbibed seed. (h) Shoot apex of a 1-month-old plant. (i) Developing panicle. (j) Developing flower. (k) Shoot apex of a 1-day imbibed seed hybridized with the sense probe (from referenc<ref name="ref1"/>)."]]

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

File:ONI1-b.jpg

2014-06-06T13:07:55Z

Dengfei91:

Os03g0181500

2014-06-06T13:03:35Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:ONI1-a.jpg|right|thumb|150px|"(a) Comparison of the gross morphology of wild-type andoni1-1(inset) at the same magnification. (b) Enlarged gross morphology of oni1-1. (c) Transgenic shoot over-expressing OSH1.(from referenc<ref name="ref1"/>)."]]

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf. ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs. These results show that fatty acid elongase is required for formation of the outermost cell layer, and this layer is indispensable for entire shoot development in rice<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">
Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">
Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">
Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

File:ONI1-a.jpg

2014-06-06T12:55:19Z

Dengfei91:

Os03g0181500

2014-05-07T15:50:57Z

Dengfei91: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
1.Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.

2.Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.

3.Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T15:49:58Z

Dengfei91:

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T15:49:25Z

Dengfei91: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
<references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T15:48:56Z

Dengfei91:

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T13:55:39Z

Dengfei91: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan

Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan

State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China

Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany

==References==
<references>
<ref name="ref1">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
<references>
==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T13:37:34Z

Dengfei91: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref2">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
<references>
==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T13:36:00Z

Dengfei91: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>
<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>
<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
<references>
==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T13:33:40Z

Dengfei91: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>
<references>
==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T13:24:57Z

Dengfei91: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===

This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.

At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.

At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.

At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.

During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.

During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.

In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs<ref name="ref2" />.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T11:31:06Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T11:30:35Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T11:17:30Z

Dengfei91:

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T11:11:52Z

Dengfei91: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===

ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0181500

2014-05-07T10:57:49Z

Dengfei91:

Please input one-sentence summary here.

==Annotated Information==
===Function===
ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes<ref name="ref2" />.

It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids<ref name="ref1" /> and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf<ref name="ref3" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Ito Y, Kimura F, Hirakata K, Tsuda K, Takasugi T, Eiguchi M, Nakagawa K, Kurata N. Fatty acid elongase is required for shoot development in rice. Plant J. 2011;66(4):680-688.</ref>

<ref name="ref2">Tsuda K, Akiba T, Kimura F, Ishibashi M, Moriya C, Nakagawa K, Kurata N, Ito Y. ONION2 fatty acid elongase is required for shoot development in rice. Plant Cell Physiol. 2013;54(2):209-17.</ref>

<ref name="ref3">Takasugi T, Ito Y. Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice. Plant Signal Behav. 2011;6(6):887-888.</ref>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0181500|
Description = Similar to Fiddlehead protein|
Version = NM_001055705.1 GI:115451138 GeneID:4331836|
Length = 4801 bp|
Definition = Oryza sativa Japonica Group Os03g0181500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:4245314..4250114|
CDS = 4245368..4245778,4248671..4249888|
GCID = <gbrowseImage1>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:4245314..4250114
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq>|
AA = <aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq>|
DNA = <dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055705.1 RefSeq:Os03g0181500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]