http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Doramusic RiceWiki - User contributions [en] 2026-08-28T08:17:53Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183945 Os05g0277000 2014-06-11T13:27:55Z <p>Doramusic: /* Protein sequence */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X <br /> <br /> 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. <br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183944 Os05g0277000 2014-06-11T13:26:32Z <p>Doramusic: /* Protein sequence */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X <br /> 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. <br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Os01g0248900_protein_3D_structure.png&diff=183943 File:Os01g0248900 protein 3D structure.png 2014-06-11T13:22:23Z <p>Doramusic: </p> <hr /> <div></div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183942 Os01g0248900 2014-06-11T13:21:54Z <p>Doramusic: /* protein 3D structure */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> ＝RNA coding sequence=<br /> /translation=&quot;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG<br /> ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN<br /> FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF<br /> AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF<br /> RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&quot;<br /> ORIGIN <br /> 1 gacgcgacaa tggcggccgc cagaatgctc gtgctcctgg cctctctctg cgctctcctg<br /> 61 ctcacggcgt ccgcggccaa atggactcct gccttcgcga cgttctacgg cggcagcgac<br /> 121 gcctccggca ccatgggcgg cgcatgcggg tacggcgacc tgtacggcgc cgggtacggg<br /> 181 acgcggacgg cggcgctgag cacggcgctg ttcaacggcg gcgcgtcgtg cggcgcctgc<br /> 241 ttcaccatcg cctgcgacac ccgcaagacg cagtggtgca agccggggac gtccatcacc<br /> 301 gtgacggcga ccaacttctg ccctccaaac tacgccctgt ccggcgacgc cggcgggtgg<br /> 361 tgcaacccgc cgcgccgcca cttcgacatg tcgcagccgg cgtgggagac gatcgcggtg<br /> 421 taccgcgccg ggatcgtgcc cgtgaactac cgccgcgtgc cgtgccagcg gagcggcggc<br /> 481 atccggttcg ccgtgaacgg gcacagctac ttcgagctgg tgctggtgac gaacgtcggc<br /> 541 ggcagcggcg cggtggcgca gatgtggatc aaggggtccg ggacggggtg gatggcgatg<br /> 601 agccgcaact ggggcgcgaa ctggcagagc aacgcgcgcc tcgacgggca ggcgctgtcg<br /> 661 ttccgggtgc aggccgacga cggccgcgtc gtcacggcgg ccgacgtcgc gccggcgggg<br /> 721 tggtcgttcg gcgccaccta cacctcctcg gctcagttct actgatgagc attaattgca<br /> 781 agcctatctc atttaattaa tctggaccgt tcgatgtagt atattgtatg ctttgatcga<br /> 841 cgtggcatag gatggaagag gccgcccacg aagaaaattt gggacttgtg tat<br /> <br /> =protein 3D structure=<br /> [[File:Os01g0248900_protein_3D_structure.png]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183941 Os01g0248900 2014-06-11T13:02:21Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> ＝RNA coding sequence=<br /> /translation=&quot;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG<br /> ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN<br /> FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF<br /> AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF<br /> RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&quot;<br /> ORIGIN <br /> 1 gacgcgacaa tggcggccgc cagaatgctc gtgctcctgg cctctctctg cgctctcctg<br /> 61 ctcacggcgt ccgcggccaa atggactcct gccttcgcga cgttctacgg cggcagcgac<br /> 121 gcctccggca ccatgggcgg cgcatgcggg tacggcgacc tgtacggcgc cgggtacggg<br /> 181 acgcggacgg cggcgctgag cacggcgctg ttcaacggcg gcgcgtcgtg cggcgcctgc<br /> 241 ttcaccatcg cctgcgacac ccgcaagacg cagtggtgca agccggggac gtccatcacc<br /> 301 gtgacggcga ccaacttctg ccctccaaac tacgccctgt ccggcgacgc cggcgggtgg<br /> 361 tgcaacccgc cgcgccgcca cttcgacatg tcgcagccgg cgtgggagac gatcgcggtg<br /> 421 taccgcgccg ggatcgtgcc cgtgaactac cgccgcgtgc cgtgccagcg gagcggcggc<br /> 481 atccggttcg ccgtgaacgg gcacagctac ttcgagctgg tgctggtgac gaacgtcggc<br /> 541 ggcagcggcg cggtggcgca gatgtggatc aaggggtccg ggacggggtg gatggcgatg<br /> 601 agccgcaact ggggcgcgaa ctggcagagc aacgcgcgcc tcgacgggca ggcgctgtcg<br /> 661 ttccgggtgc aggccgacga cggccgcgtc gtcacggcgg ccgacgtcgc gccggcgggg<br /> 721 tggtcgttcg gcgccaccta cacctcctcg gctcagttct actgatgagc attaattgca<br /> 781 agcctatctc atttaattaa tctggaccgt tcgatgtagt atattgtatg ctttgatcga<br /> 841 cgtggcatag gatggaagag gccgcccacg aagaaaattt gggacttgtg tat<br /> <br /> =protein 3D structure=<br /> [[File:[[File:Os01g0248900_protein_3D_structure.png]]]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183940 Os01g0248900 2014-06-11T13:01:25Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> ＝RNA coding sequence=<br /> /translation=&quot;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG<br /> ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN<br /> FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF<br /> AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF<br /> RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&quot;<br /> ORIGIN <br /> 1 gacgcgacaa tggcggccgc cagaatgctc gtgctcctgg cctctctctg cgctctcctg/<br /> 61 ctcacggcgt ccgcggccaa atggactcct gccttcgcga cgttctacgg cggcagcgac/<br /> 121 gcctccggca ccatgggcgg cgcatgcggg tacggcgacc tgtacggcgc cgggtacggg/<br /> 181 acgcggacgg cggcgctgag cacggcgctg ttcaacggcg gcgcgtcgtg cggcgcctgc/<br /> 241 ttcaccatcg cctgcgacac ccgcaagacg cagtggtgca agccggggac gtccatcacc/<br /> 301 gtgacggcga ccaacttctg ccctccaaac tacgccctgt ccggcgacgc cggcgggtgg/<br /> 361 tgcaacccgc cgcgccgcca cttcgacatg tcgcagccgg cgtgggagac gatcgcggtg/<br /> 421 taccgcgccg ggatcgtgcc cgtgaactac cgccgcgtgc cgtgccagcg gagcggcggc/<br /> 481 atccggttcg ccgtgaacgg gcacagctac ttcgagctgg tgctggtgac gaacgtcggc/<br /> 541 ggcagcggcg cggtggcgca gatgtggatc aaggggtccg ggacggggtg gatggcgatg/<br /> 601 agccgcaact ggggcgcgaa ctggcagagc aacgcgcgcc tcgacgggca ggcgctgtcg/<br /> 661 ttccgggtgc aggccgacga cggccgcgtc gtcacggcgg ccgacgtcgc gccggcgggg/<br /> 721 tggtcgttcg gcgccaccta cacctcctcg gctcagttct actgatgagc attaattgca/<br /> 781 agcctatctc atttaattaa tctggaccgt tcgatgtagt atattgtatg ctttgatcga/<br /> 841 cgtggcatag gatggaagag gccgcccacg aagaaaattt gggacttgtg tat<br /> <br /> =protein 3D structure=<br /> [[File:[[File:Os01g0248900_protein_3D_structure.png]]]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183939 Os01g0248900 2014-06-11T12:58:15Z <p>Doramusic: /* protein 3D structure */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> <br /> =protein 3D structure=<br /> [[File:[[File:Os01g0248900_protein_3D_structure.png]]]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183938 Os01g0248900 2014-06-11T11:54:25Z <p>Doramusic: /* protein 3D structure */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> <br /> =protein 3D structure=<br /> [[File:Os01g0248900_protein_3D_structure.png]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183937 Os01g0248900 2014-06-11T11:52:43Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> <br /> =protein 3D structure=<br /> [[File:[[Os01g0248900_protein_3D_structure.png]]]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183936 Os01g0248900 2014-06-11T11:49:29Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.<br /> [[Os01g0248900_protein_3D_structure.png]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0248900&diff=183932 Os01g0248900 2014-06-11T09:56:53Z <p>Doramusic: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan.<br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0248900|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001049122.1 GI:115435657 GeneID:4327217|<br /> Length = 1014 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0248900, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:8195063..8196076|<br /> CDS = 8195191..8195819,8195941..8196067|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:8195063..8196076<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAAARMLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGG ACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATN FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRF AVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSF RVQADDGRVVTAADVAPAGWSFGATYTSSAQFY&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;258..886#10..136#gacgcgacaatggcggccgccagaatgctcgtgctcctggcctctctctgcgctctcctgctcacggcgtccgcggccaaatggactcctgccttcgcgacgttctacggcggcagcgacgcctccggcaccatgggttagtagcaaattaagctcagctaatcaccatgcatgtgttaattaatcttttgcaaagtttaattggcatttacaataatggagtttggtctctctctcgtctcgtgtgtgatatccaggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcggcgctgagcacggcgctgttcaacggcggcgcgtcgtgcggcgcctgcttcaccatcgcctgcgacacccgcaagacgcagtggtgcaagccggggacgtccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgcaacccgccgcgccgccacttcgacatgtcgcagccggcgtgggagacgatcgcggtgtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgccagcggagcggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaacgtcggcggcagcggcgcggtggcgcagatgtggatcaaggggtccgggacggggtggatggcgatgagccgcaactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgggtgcaggccgacgacggccgcgtcgtcacggcggccgacgtcgcgccggcggggtggtcgttcggcgccacctacacctcctcggctcagttctactgatgagcattaattgcaagcctatctcatttaattaatctggaccgttcgatgtagtatattgtatgctttgatcgacgtggcataggatggaagaggccgcccacgaagaaaatttgggacttgtgtat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049122.1 RefSeq:Os01g0248900]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183931 Os05g0277000 2014-06-11T09:48:42Z <p>Doramusic: /* Protein sequence */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> <br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> <br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> <br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> <br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> <br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> <br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> <br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> <br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> <br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> <br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> <br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> <br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> <br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> <br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> <br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> <br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> <br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> <br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. <br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183930 Os05g0277000 2014-06-11T09:48:04Z <p>Doramusic: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. <br /> <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> <br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> <br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183929 Os05g0277000 2014-06-11T09:47:39Z <p>Doramusic: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. <br /> 2. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb.<br /> 3. The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1.<br /> 4. The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183928 Os05g0277000 2014-06-11T09:46:24Z <p>Doramusic: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> <br /> <br /> The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. PMID 18089549, Free PMC Article<br /> Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb. PMID 17210932, Free PMC Article<br /> The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381971, Free PMC Article<br /> The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183927 Os05g0277000 2014-06-11T09:44:39Z <p>Doramusic: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> 1National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan, 2Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan, 3Japan Biological Informatics Consortium, Tokyo 135-0064, Japan, 4Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Innovation Center Okayama for Nanobio-targeted Therapy, Okayama<br /> 5<br /> 700-8558, Japan, Department of Biological Sciences,<br /> Tokyo Metropolitan University, Tokyo 192-0397, Japan, 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 411-8540, Japan, 7Institute of Botany, Academia Sinica, Taipei 11529, Taiwan, 8Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China, 9Cold Spring Harbor Laboratory, NY 11723, USA, 10European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK, 11Graduate School of Information Science and Technology, Hokkaido University, Hokkaido 060-0814, Japan, 12Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India, 13National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India, 14Institute for Bioinformatics/ MIPS, GSF National Research Center for Environment and Health, D-85764 Neuherberg, Germany, 15Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Ibaraki 305-0854, Japan, 16Crop Research Informatics Laboratory, International Rice Research Institute, Metro Manila, Philippines, 17Department of Biology, McGill University, Quebec H3A 1B1, Canada, 18Tsukuba Division, Mitsubishi Space Software Co., Ltd., Ibaraki 305-0032, Japan, 19Centre for Comparative Genomics, Murdoch University, Western Australia 6150, Australia, 20Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan, 21National Center for Biotechnology<br /> 12<br /> Information, National Institutes of Health, MD 20894, USA, 22Pohang University of Science and Technology, Pohang 790-784, Korea, 23RIKEN BioResource Center, RIKEN Tsukuba Institute, Ibaraki 305-0074, Japan, 24Waksman Institute of Microbiology, Rutgers University, NJ 08854, 25Stanford University Medical Center, CA 94305-5120, USA, 26Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva 1206, Switzerland,<br /> 27Arizona Genomics Institute, The University of Arizona, AZ 85721, USA, 28University of Delaware, DE 19711, USA and 29University of Perpignan, UMR CNRS-IRD 5096, Perpignan 66860, France<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183926 Os05g0277000 2014-06-11T09:40:49Z <p>Doramusic: /* Protein sequence */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> &lt;nowiki&gt;2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242&lt;/nowiki&gt;<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183925 Os05g0277000 2014-06-11T09:39:52Z <p>Doramusic: /* Protein sequence */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> ----<br /> <br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183924 Os05g0277000 2014-06-11T09:39:11Z <p>Doramusic: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183923 Os05g0277000 2014-06-11T09:38:42Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> =Protein name= <br /> Os05g0277000 protein<br /> <br /> =Protein sequence=<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183922 Os05g0277000 2014-06-11T09:38:18Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> =Protein name= Os05g0277000 protein <br /> <br /> =Protein sequence=<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183921 Os05g0277000 2014-06-11T09:37:18Z <p>Doramusic: /* 3D Gene Structure */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> Protein name: Os05g0277000 protein <br /> <br /> Protein sequence:<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183920 Os05g0277000 2014-06-11T09:36:56Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> Protein name: Os05g0277000 protein <br /> <br /> Protein sequence:<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ===3D Gene Structure===<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183919 Os05g0277000 2014-06-11T09:36:21Z <p>Doramusic: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> Protein name: Os05g0277000 protein <br /> <br /> Protein sequence:<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> NM_001061613.1 → NP_001055078.1 Os05g0277000 [Oryza sativa Japonica Group]<br /> <br /> See proteins identical to NP_001055078.1<br /> <br /> Status: PROVISIONAL<br /> <br /> UniProtKB/Swiss-Prot<br /> P0C1Y4 <br /> UniProtKB/TrEMBL<br /> Q0DJI1 <br /> Conserved Domains (3) summary<br /> <br /> smart00837<br /> Location:59 → 145<br /> Blast Score: 403<br /> DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel<br /> <br /> PLN00193<br /> Location:8 → 248<br /> Blast Score: 883<br /> PLN00193; expansin-A; Provisional<br /> <br /> pfam01357<br /> Location:156 → 233<br /> Blast Score: 256<br /> Pollen_allerg_1; Pollen allergen<br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ===3D Gene Structure===<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0277000&diff=183918 Os05g0277000 2014-06-11T09:34:57Z <p>Doramusic: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence<br /> <br /> By similarity.<br /> <br /> Subcellular location: Secreted › cell wall<br /> <br /> By similarity. Membrane; Peripheral membrane protein<br /> <br /> By similarity.<br /> <br /> Sequence similarities: Belongs to the expansin family. Expansin A subfamily.Contains 1 expansin-like CBD domain.Contains 1 expansin-like EG45 domain.<br /> <br /> <br /> ===Expression===<br /> <br /> Protein name: Os05g0277000 protein <br /> <br /> Protein sequence:<br /> 2HCZ_X 148 IVFHIEKG.[2].PNYLAVLVKYVADDGDIVLMEIQ.[2].L S A.[1].WKPMKLSWGAIWRMD.[1]. 202<br /> query 156 IRFTISGR DYFELVTVFNVGGSGVVAQVSIK.[2].K T D WMAMSRNWGQNWQSN 206<br /> gi 20138021 157 VRFTMRGQ GNFNMVMISNVGGGGSVRSVAVR G S.[2].K.[1].WLQMTRNWGANWQSS 208<br /> gi 20138096 162 MRFTINGR NYFELVLISNVAGGGEISKVWIK G S.[2].N.[1].WETMSRNWGANYQSN 213<br /> gi 75244809 158 IRFTINGK NYFELVLIANVGGSGVVSGAWIK G S.[2].Q WMAMSRNWGMNWQSN 208<br /> gi 75223466 157 MRFTINGN DYFELVTVANVGGSGVVSQMWIK G F.[2].D WMVMSRNWGASWQSN 207<br /> gi 75263195 162 VKFAINGH NYFELVNVFNVGGSGVVTGLWIK G S.[2].D WLVMSRNWGANWQSN 212<br /> gi 75267715 164 VRFTINGR NYFELLMISNVGGAGSVQSVQIK G S.[2].N WMTMSRNWGANWQSN 214<br /> gi 115450129 220 VTFHVEQG.[2].PVYMAILVEYENGDGDVVQVDLM.[2].R.[10].T G.[1].WTPMRESWGSIWRLD 283<br /> gi 125551519 160 LTFAVDAG.[2].PSYFAVLVKYENGDGDLSGMDLM.[2].G A G.[2].WTPMQQSWGAVWKLS 214<br /> <br /> <br /> 2HCZ_X 203 A KALKGPFSIRLTS.[3].KKVIAKDVIP 229<br /> query 207 A YLNTQSLSFKVKL.[3].REVTVWNIAP 233<br /> gi 20138021 209 G DLRGQRLSFKVTL.[3].KTQTFLNVVP 235<br /> gi 20138096 214 T YLNGQSLSFKVQL.[3].SIKAALNVVP 240<br /> gi 75244809 209 A YLTGQSLSFRVQT.[3].KVKTAYDVAP 235<br /> gi 75223466 208 A YLNSQSISFRVQT.[3].RVITADNVAP 234<br /> gi 75263195 213 A YLNGQGLSFRVQL.[3].RQVTATNVAP 239<br /> gi 75267715 215 A YLNGQPLSFKVTT.[3].VTKTFLNAIS 241<br /> gi 115450129 284 T.[1].HPLQGPFSLRITN.[3].KTLIADQVIP 311<br /> gi 125551519 215 A.[1].AALQAPLSIRLTS.[3].KTLVASNVIP 242<br /> <br /> <br /> NM_001061613.1 → NP_001055078.1 Os05g0277000 [Oryza sativa Japonica Group]<br /> <br /> See proteins identical to NP_001055078.1<br /> <br /> Status: PROVISIONAL<br /> <br /> UniProtKB/Swiss-Prot<br /> P0C1Y4 <br /> UniProtKB/TrEMBL<br /> Q0DJI1 <br /> Conserved Domains (3) summary<br /> <br /> smart00837<br /> Location:59 → 145<br /> Blast Score: 403<br /> DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel<br /> <br /> PLN00193<br /> Location:8 → 248<br /> Blast Score: 883<br /> PLN00193; expansin-A; Provisional<br /> <br /> pfam01357<br /> Location:156 → 233<br /> Blast Score: 256<br /> Pollen_allerg_1; Pollen allergen<br /> <br /> This family contains allergens lol PI, PII and PIII from Lolium perenne.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> <br /> ===3D Gene Structure===<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0277000|<br /> Description = Similar to Expansin Os-EXPA3|<br /> Version = NM_001061613.1 GI:115462956 GeneID:4338279|<br /> Length = 1006 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0277000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:11429537..11430542|<br /> CDS = 11429537..11429843,11429990..11430308,11430422..11430542|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:11429537..11430542<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAMPVVQVLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGAC GYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLC PPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTI SGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKV KLDDAREVTVWNIAPSNWNFGTTYTSNINF&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;700..1006#235..553#1..121#atggcaatgccagtagtacaagtgcttcttctttgcgcattagcttatcaagcagtcgacgcccagtggacaccagccacggcaacgttctacggcggcagcgatggcgctggtaccatgggtacgttcgtttatcttcctccatttctgcaaaacgttttctttttttttttcctttctggagaaatgtgcatgcatattgatgatgttgattgtgcgtgcatatgcatgcaggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacgacggcgccatgtgcggcgcgtgctacaccatcgcctgcgacaccagccagtccacgtggtgcaagcccggcacgtccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccggcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcctggacctccatcgccatctaccaagccggcatcgtccccgtcaattttaagaggtatacgcgaaatcgcaaaacacaagtcactactacagaaaccggccccttcatatatgatatatatcgatcggttcgttgtgtcaggttttaaaccggcagtgacatgaacatgtgcttatgagcggctgtgtgtgcatttttagggtaccgtgccagaagagcgggggcatcaggttcaccataagcgggagggactacttcgagctggtgacggtgttcaacgtgggaggcagcggcgtggtggcgcaggtgtcgatcaaggggtccaagacggactggatggcgatgagcaggaactggggccaaaactggcagagcaacgcctacctcaacacccagagcctgtcgttcaaggtgaagctcgacgacgcccgcgaggtcacggtgtggaacatcgcgccctccaactggaacttcggcaccacctacacgtccaacatcaacttctag&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061613.1 RefSeq:Os05g0277000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div> Doramusic