http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Fayer 2026-05-25T02:25:11Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183195 2014-06-10T03:45:51Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> <br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> <br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> <br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> === Knowledge Extension ===<br /> By conducting Co-IP experiments, they confirm the physical interaction between OsMADS50 and OsMADS56. Myc-tagged OsMADS50 was first co-transfected with HA-tagged OsMADS56 into rice protoplasts before whole-protoplast extracts expressing epitope-tagged proteins were immunoprecipitated with anti-Myc antibodies. Immunoblot analysis with anti-HA antibodies revealed that HA-tagged OsMADS56 was co-precipitated with the Myc-tagged OsMADS50 (Fig. 8b). Similarly, HA-tagged OsMADS50 was co-precipitated with the Myc-tagged OsMADS56 (Fig. 8b). However, neither OsMADS50-HA nor OsMADS56-Myc alone showed such co-precipitation.These experiments supported our findings from the yeast two-hybrid trials that OsMADS50 and OsMADS56 do interact with each other. We also showed that OsMADS50 and OsMADS56 form homodimers, based on those yeast-two hybrid (data not shown) and Co-IP experiments (Fig. 8c).<br /> [[File:fig8a.jpg]] [[File:fig8bc.jpg]]<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig8bc.jpg&diff=183189 2014-06-10T03:40:02Z

<p>Fayer: Co-immunoprecipitation assay for OsMADS50 itself(b) and OsMADS56 itself (c)</p> <hr /> <div>Co-immunoprecipitation assay for OsMADS50 itself(b) and OsMADS56 itself (c)</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183186 2014-06-10T03:38:55Z

<p>Fayer: /* Knowledge Extension */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> === Knowledge Extension ===<br /> By conducting Co-IP experiments, they confirm the physical interaction between OsMADS50 and OsMADS56. Myc-tagged OsMADS50 was first co-transfected with HA-tagged OsMADS56 into rice protoplasts before whole-protoplast extracts expressing epitope-tagged proteins were immunoprecipitated with anti-Myc antibodies. Immunoblot analysis with anti-HA antibodies revealed that HA-tagged OsMADS56 was co-precipitated with the Myc-tagged OsMADS50 (Fig. 8b). Similarly, HA-tagged OsMADS50 was co-precipitated with the Myc-tagged OsMADS56 (Fig. 8b). However, neither OsMADS50-HA nor OsMADS56-Myc alone showed such co-precipitation.These experiments supported our findings from the yeast two-hybrid trials that OsMADS50 and OsMADS56 do interact with each other. We also showed that OsMADS50 and OsMADS56 form homodimers, based on those yeast-two hybrid (data not shown) and Co-IP experiments (Fig. 8c).<br /> [[File:fig8a.jpg]] [[File:fig8bc.jpg]]<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig8a.jpg&diff=183182 2014-06-10T03:37:41Z

<p>Fayer: (a) Yeast two-hybrid assay. Two plasmids containing either AD or BD construct were introduced into yeast strain and transformants were grown on selective medium lacking Leu, Trp and His. OsMADS14-K bait and OsMADS1-KC prey were used as positive control, C</p> <hr /> <div>(a) Yeast two-hybrid assay. Two plasmids containing either AD or BD construct were introduced into yeast strain and transformants were grown on selective medium lacking Leu, Trp and His. OsMADS14-K bait and OsMADS1-KC prey were used as positive control, Co-immunoprecipitation assay between OsMADS50 and OsMADS56.</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183180 2014-06-10T03:34:57Z

<p>Fayer: /* Knowledge Extension */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> === Knowledge Extension ===<br /> By conducting Co-IP experiments, they confirm the physical interaction between OsMADS50 and OsMADS56. Myc-tagged OsMADS50 was first co-transfected with HA-tagged OsMADS56 into rice protoplasts before whole-protoplast extracts expressing epitope-tagged proteins were immunoprecipitated with anti-Myc antibodies. Immunoblot analysis with anti-HA antibodies revealed that HA-tagged OsMADS56 was co-precipitated with the Myc-tagged OsMADS50 (Fig. 8b). Similarly, HA-tagged OsMADS50 was co-precipitated with the Myc-tagged OsMADS56 (Fig. 8b). However, neither OsMADS50-HA nor OsMADS56-Myc alone showed such co-precipitation.These experiments supported our findings from the yeast two-hybrid trials that OsMADS50 and OsMADS56 do interact with each other. We also showed that OsMADS50 and OsMADS56 form homodimers, based on those yeast-two hybrid (data not shown) and Co-IP experiments (Fig. 8c).<br /> [[File:fig8a.jpg]] [[File.fig8bc.jpg]]<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183179 2014-06-10T03:31:28Z

<p>Fayer: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> === Knowledge Extension ===<br /> <br /> To confirm the physical interaction between OsMADS50 and OsMADS56, we studied their in vivo interaction by conducting Co-IP experiments. Myc-tagged OsMADS50 was first co-transfected with HA-tagged OsMADS56 into rice protoplasts before whole-protoplast extracts expressing epitope-tagged proteins were immunoprecipitated with anti-Myc antibodies. Immunoblot analysis with anti-HA antibodies revealed that HA-tagged OsMADS56 was co-precipitated with the Myc-tagged OsMADS50 (Fig. 8b). Similarly, HA-tagged OsMADS50 was co-precipitated with the Myc-tagged OsMADS56 (Fig. 8b). However, neither OsMADS50-HA nor OsMADS56-Myc alone showed such co-precipitation.These experiments supported our findings from the yeast two-hybrid trials that OsMADS50 and OsMADS56 do interact with each other. We also showed that OsMADS50 and OsMADS56 form homodimers, based on those yeast-two hybrid (data not shown) and Co-IP experiments (Fig. 8c).<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183178 2014-06-10T03:30:41Z

<p>Fayer: /* Knowledge Extension */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> <br /> To confirm the physical interaction between OsMADS50 and OsMADS56, we studied their in vivo interaction by conducting Co-IP experiments. Myc-tagged OsMADS50 was first co-transfected with HA-tagged OsMADS56 into rice protoplasts before whole-protoplast extracts expressing epitope-tagged proteins were immunoprecipitated with anti-Myc antibodies. Immunoblot analysis with anti-HA antibodies revealed that HA-tagged OsMADS56 was co-precipitated with the Myc-tagged OsMADS50 (Fig. 8b). Similarly, HA-tagged OsMADS50 was co-precipitated with the Myc-tagged OsMADS56 (Fig. 8b). However, neither OsMADS50-HA nor OsMADS56-Myc alone showed such co-precipitation.These experiments supported our findings from the yeast two-hybrid trials that OsMADS50 and OsMADS56 do interact with each other. We also showed that OsMADS50 and OsMADS56 form homodimers, based on those yeast-two hybrid (data not shown) and Co-IP experiments (Fig. 8c).<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183177 2014-06-10T03:26:26Z

<p>Fayer: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> <br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> <br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> <br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183175 2014-06-10T03:25:48Z

<p>Fayer: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> <br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> <br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> <br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> <br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig2d.jpg&diff=183168 2014-06-10T03:22:32Z

<p>Fayer: (d) Heading date of two 56OX plants (#8 and #10) compared with WT under SD. Error bars indicate standard deviations; n = 10 plants</p> <hr /> <div>(d) Heading date of two 56OX plants (#8 and #10) compared with WT under SD. Error bars indicate standard deviations; n = 10 plants</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig2c.jpg&diff=183165 2014-06-10T03:21:40Z

<p>Fayer: (c) Heading date of two 56OX lines (#8 and #10) compared with WT under LD. Error bars indicate standard deviations; n = 10 plants</p> <hr /> <div>(c) Heading date of two 56OX lines (#8 and #10) compared with WT under LD. Error bars indicate standard deviations; n = 10 plants</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183162 2014-06-10T03:20:33Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig2b.jpg]] [[File:fig2c.jpg]] [[File:fig2d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig2b.jpg&diff=183159 2014-06-10T03:18:58Z

<p>Fayer: (b) Phenotypes of OsMADS56 overexpressing plant (OX) and WT at heading stage.</p> <hr /> <div>(b) Phenotypes<br /> of OsMADS56 overexpressing plant (OX) and WT at heading stage.</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183157 2014-06-10T03:18:01Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> [[File:fig3b.jpg]] [[File:fig3c.jpg]] [[File:fig3d.jpg]]<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183148 2014-06-10T03:12:58Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183147 2014-06-10T03:12:24Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Using the maize Ubiquitin promoter in transgenic plants that over-expressed OsMADS56 (56OX; Fig. 2a). Among 17 primary (T1) plants, 9 flowered late by 1–2 weeks in the paddy field. RT-PCR analyses of three normal plants (#4, 19 and 20) and five late-flowering plants (#6, 8, 10, 11 and 13) demonstrated that the extent of late flowering was correlated with OsMADS56 transcript levels (data not shown). Then selected Lines 8 and 10 for further analyses of the next generations when grown in controlled environments. Both lines displayed a dominant late-flowering phenotype under LDs. Homozygous progeny flowered late<br /> by 3–4 weeks under LD (Fig. 2b,c), although no significant change was observed under SD (Fig. 2d). These results suggest that OsMADS56 is an LD-specific floral repressor. They observed no other phenotypic changes in this overexpressor except for the delayed-flowering phenotypes.<br /> (2)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (3)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (4)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of them is similar to that of Ehd1.<br /> (5)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.<br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig2a.jpg&diff=183140 2014-06-10T03:05:51Z

<p>Fayer: (a) Schematic diagram of OsMADS56 sense construct. OsMADS56 full-length cDNA clone was placed between maize Ubiquitin promoter (Pubi) and nos terminator (Tnos).</p> <hr /> <div>(a) Schematic diagram of OsMADS56 sense construct.<br /> OsMADS56 full-length cDNA clone was placed between maize Ubiquitin promoter (Pubi) and nos terminator (Tnos).</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183138 2014-06-10T03:04:56Z

<p>Fayer: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> [[File:fig2a.jpg]]<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183137 2014-06-10T03:01:46Z

<p>Fayer: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. OsMADS50 is a flowering activator that functions only under LD conditions. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> OsMADS56 is highly homologous to OsMADS50. OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein (Fig. 2a). When their full-length protein sequences are aligned, this MADS-box protein shares 60.8% homology with OsMADS50. This implies that OsMADS56 may also regulate flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig1abc.jpg&diff=183107 2014-06-10T02:45:37Z

<p>Fayer: Schematic diagram of OsMADS50 genomic structure, positions of T-DNA insertional mutant alleles and flowering time of mutants.(a) OsMADS50 (Os03g0122600) consists of eight exons and seven introns. Gray boxes indicate 5′ and 3′ untranslated regions. Tri</p> <hr /> <div>Schematic diagram of OsMADS50 genomic structure, positions of T-DNA insertional mutant alleles and flowering time of mutants.(a) OsMADS50 (Os03g0122600) consists of eight exons and seven introns. Gray boxes indicate 5′ and 3′ untranslated regions. Triangles are T-DNAs, which were inserted into the fifth and third introns in osmads50-1 and osmads50-2 , respectively. (b) Days to heading in osmads50-1 and osmads50-2 plants under controlled LD (14 h light). (c) Days to heading in osmads50-1 and osmads50-2 plants under controlled SD (10 h light). Days to heading was scored when first panicle bolted.</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=183099 2014-06-10T02:41:17Z

<p>Fayer: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock.OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. Using two independent T-DNA insertional mutant alleles, osmads50-1 and osmads50-2, They have elucidated the functional roles of OsMADS50 under different photoperiodic conditions. In the experiment T-DNAs were inserted into the fifth intron and third intron of OsMADS50, respectively (Fig. 1a) Under LD conditions, the homozygous plants of both alleles flowered about 2 months<br /> later than the WT (Fig. 1b). However, under SD, both the osmads50 mutants and the WT flowered almost simultaneously (Fig. 1c).These results indicate that OsMADS50 is a flowering activator that functions only under LD conditions. In conclusion, under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> [[File:fig1abc.jpg]]<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179386 2014-06-06T15:03:45Z

<p>Fayer: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> Although the osmads50 null mutant plants flowered late, they did eventually bloom after 2 months. This indicates that other positive regulators induced flowering in the absence of OsMADS50.OsDof12 functions independently from OsMADS50 as a positive regulator of Hd3a under LD-specific conditions.Unlike the osmads50 mutants, suppression of OsID1 causes extremely late flowering under LDs.<br /> <br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179380 2014-06-06T14:57:02Z

<p>Fayer: /* Knowledge Extension */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179379 2014-06-06T14:56:39Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> === Knowledge Extension ===<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> == Knowledge Extension ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179378 2014-06-06T14:55:24Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == Knowledge Extension ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179376 2014-06-06T14:54:57Z

<p>Fayer: /* Knowledge Extension */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179372 2014-06-06T14:53:53Z

<p>Fayer: /* interference */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == Knowledge Extension ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179370 2014-06-06T14:52:50Z

<p>Fayer: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> 5.Lee S., Kim J., Han J.J., Han M.J. &amp; An G. (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. ThePlant Journal 38, 754–764.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179366 2014-06-06T14:50:16Z

<p>Fayer: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=179364 2014-06-06T14:48:48Z

<p>Fayer: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 2.SOON JU PARK2&amp;CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea<br /> 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA<br /> 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea<br /> 5.Kaufmann, Melzer &amp; Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany.<br /> 6.Takada S. &amp; Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170844 2014-05-22T14:35:39Z

<p>Fayer: /* interference */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> ===Evolution===<br /> Please input evolution information here.<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170842 2014-05-22T14:34:13Z

<p>Fayer: /* interference */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170841 2014-05-22T14:33:32Z

<p>Fayer: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> == interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170840 2014-05-22T14:32:50Z

<p>Fayer: /* Interference */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170838 2014-05-22T14:31:51Z

<p>Fayer: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> == Interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170837 2014-05-22T14:30:45Z

<p>Fayer: /* Interference */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170836 2014-05-22T14:29:09Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.<br /> <br /> == Interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170834 2014-05-22T14:26:22Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> <br /> == Interference ==<br /> In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.<br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtg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caatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170829 2014-05-22T14:09:45Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.<br /> (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170799 2014-05-22T12:28:44Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of <br /> them is similar to that of Ehd1.[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170798 2014-05-22T12:28:05Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9).[[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170797 2014-05-22T12:27:38Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170796 2014-05-22T12:27:09Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:F3b-f.jpg&diff=170795 2014-05-22T12:26:42Z

<p>Fayer: Expression patterns of floral regulators at various stages. (a)–(f) Real-time RT-PCR analyses of OsMADS50 (a), OsMADS56 (b), OsLFL1 (c), Ehd1 (d), Hd3a (e) and RFT1 (f) at various developmental stages.</p> <hr /> <div>Expression patterns of floral regulators at various stages. (a)–(f) Real-time RT-PCR analyses of OsMADS50 (a), OsMADS56 (b), OsLFL1 (c), Ehd1 (d), Hd3a (e) and RFT1 (f) at various developmental stages.</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170794 2014-05-22T12:26:02Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). <br /> [[File:f3b-f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170793 2014-05-22T12:25:34Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). <br /> [[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170792 2014-05-22T12:24:52Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). <br /> [[File:fig3.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170791 2014-05-22T12:24:16Z

<p>Fayer: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). <br /> [[File:3b-3f.jpg]][[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os10g0536100&diff=170790 2014-05-22T12:23:34Z

<p>Fayer: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> OsMADS50 and OsMADS56 , which is<br /> highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a<br /> flowering activator by controlling various floral regulators<br /> such as OsMADS1, OsMADS14, OsMADS15, OsMADS18<br /> and Hd3a. But OsMADS50 and OsMADS56 function<br /> antagonistically in regulating LD-dependent flowering<br /> by controlling expression of OsLFL1 and Ehd1.<br /> MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and<br /> OsMADS56 form a complex that regulates downstream<br /> target genes in order to regulate the Rice's flowering time.<br /> <br /> ===Expression===<br /> (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage<br /> but gradually increased to a maximum at 4 weeks after<br /> germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)<br /> (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)<br /> (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators<br /> such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms. The transcript levels of <br /> them is similar to that of Ehd1(fig9). <br /> [[File:fig9.jpg]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell &amp; Environment, 2009, 32(10): 1412-1427<br /> 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12<br /> 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. &amp; Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical &amp; Biophysical Research Communications 360, 251–256.<br /> 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. &amp; Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os10g0536100|<br /> Description = Transcription factor MADS56|<br /> Version = NM_001071703.1 GI:115483149 GeneID:4349237|<br /> Length = 10441 bp|<br /> Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|<br /> AP = Chromosome 10:21318476..21328916|<br /> CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944&lt;br&gt;,21328060..21328101,21328414..21328517,21328527..21328605|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008403:21318476..21328916<br /> source=RiceChromosome10<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcagtaacctgcaggcagagaaaaacagcatgattgaaagcacagttttgcataaacaatacatcgcaagtagatgaaaactattaaaacataatcatcaataatgatctgaccagtctaaaaaaatcaataatgatacgcatcaatagatataagtccatcatgaacaatcataatgcaataatccatcacaaaacccctacatagggcataccacaatattattccttctcaaattgtaattcaaggtataacacaatttcacagcacacataaatatcttattgatcttttctctctttccattagagatgtacctacagataacccttcaaagtgaagataaattcatatataaattttcaaatatgtttttctagattttcaaattataaaataaactgtcccaggcagttactagacgttgagatttctaacatggttgtgccatcaatggctgtttaatttctgtacatattacataacatatagtagggttgtcaatgagctgaacttgagcacatggcacatcaatttcgttttcaagttgaatgaatgatctaaattgaccttgagtgaacctgagttggtgccaacaaccgatgttgaaggtatgctcttgctaaaatttaattgaaaacttgagctttagcccgataaggtcacacgaactctatttatgcatgtctgaatgtgtttcatgcaaaaaagaaaaggcatggccaataatttcgaatccataaggcttgttagcttacatgtgttatccttcaatgaaaattatattctatattggacaaggtttcgattcttgttggtttatatggttgaaacttttatgcttggaacaattcctacctgatgaatcttgttattattcccaaagaatagccaaatacaatatatttgtttctactatataacaactacattttggcaagtcaataatttttttttgcgaggaggctagtcaataattaagtaggcacactcctatgcacgccaatcagattatgttgattcagaaacatgcatgcgcactgcacataagattgctcattgaggtagttgcattatttatttagctaagatattgccagcatggcaatgaagcagatatgatgaaaatggaggatccagaatatatatcctcagcttttttttccaattatcaaaaagtttaaaccatcactaggaagagtgaagctcttgcattgttcatttaattaggtggacaacagaaggaacagttcagtttcataatatatagcggtcaagaaaaagtttcatattatatataatacatgtgattttgcgacttgatacatttatcgtagtatccattattcttgttaaactgagcctgccctgcctatggaatgattacctgaaatattattttagtggaactcagttatgccttttatattttattaaaaagatagaatttgagtttgtgtcccaattttttgttaccaggaaagattctaaaaaaactcaaaagatgttgactatctaatctttttgaacaagatagatacttagaaccaaatttacacaaagaataaagcattttaaaatgtaatacaagtagatgtatttcctagtctggtttgaactgcatacaaaaacaaaattgctccaaaggatgtctgtcatactggcaaatgtagacatgcttcttgaaaaagttggctcaaagatggtcaattatgcaatgtttttttttcaaataaatatatattttttaacatatgtactgaaattgaacgttttgtgatatacacagaacatgcaccagtttaacttgcagtcctgaattttattgatgtttaagtgcttgcgttcacttattggtaactatagaacgtccatgcatgtgctatcgtgtgtacagcttgggatgtaacatctgaattatgatataataaatatctaggaaggtaacaaaatgttcctcgctagtgctggtgttgatatattttcagagaaagctggaagcgcaactgtcaaatcaacagccgcctattggcattgaaacatacatatctacctctcgttgtttctacttttttttggcaagaatttggttggatatagttggccataggcctgtagccaccactgtttgtagcatcgcaatatgcacagacaaacatttgagctgctgagctagcagagctagctagtttattgtagcaggttggaacaagcacagctagctcaagtcatgcatgcactaataaattagagtatgtatgttttttgccccagaacgattatatcatcgatcttctgatttttagtttgctccttgtgtctgttctgcagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccaggtgaatatcttgcctccacacacaatccgcatatatcatgcaacatatgaaaactatttccttctttttatgttgacgagttcttgcgtgatgcagaaggtactgcaatttagcaattaatggcacaattttatattgctgacttttaactttctggcatgcattttaacgtagcaatggcgtgtttgttaatatagctctagactctaggattacaagaaaacagaatgtccctagctctctagacttggcggttgggcaacagaataattagccttggtggttttcagtctatacttggcggttttcgaccgccaagaacattctgttttcttgtagtgtggtgtggtacattttgcggcatcttcagtttttttttttgaaagttgcatcttcagttattagtgctagcttagctaagagaacatactgcagttaatttagcaataaaagtacaaagtaccaaacacattgtaaagtagcgctacatgtaacatgttcatcagctgatcggttgttgggagtcctattaatttgccattggtatgtctattaattaaactagatgaataccccgccgcgttgctgcgggaaattaagttacataatatgtacatatatgatgcaatataattattaaaactaaacaaattggtacttatgaattttgagcctataaataattgagattgcatggtgttatgagagaagaaagaagagacaatttgaaccatagatctatcatccaaaggctagaaataattgggatgatgtggcttaatgagagaagagagaaatagtaataactacacttagtgtggatgaactatataagtagggatgaaaacggtcggaaacgatcggaaaacaacctcaaccatttccataatcatatttttctcggaaatgaaatcaaaaacggtaaagtcggaaacgaaaatgatatcggaaatatcggaaaaccggaaacggaataatacggacggaaacatgtcggtacagatcggaaaccggtaacaaatacgaaaacgttaaactatagaaaacatatataagtatgttatatgtacaaataaattcaagctatactatataaattataaattaactccattttagccatgcactcaagttagggatttgattgaagaatcaatcaatctctaaactgtgggtcaagtagagacgtgccctttagatatcaacatatttagaaatacggtaattaccacattataagaaacggtaattttcataagaatacggtaaatatggaaacgatcggtacaacagcaaaatcatttccgtttccattttcatattttttaccatttccatatggctcggccggtagaaagtcggaaacgaacgctagtcggccgggaatttccgttaccgttttcacccctatatataagtaaataggatgcctgcatcctagtatcctacactttagcaccttcaattaattaattgttgcaggtaacttcttattaagatgaaaaataattattatctgcatgagacttagctgaatcaatattttcctagttaactcatatgtgccaaattccatttgtaatttcaccaaaaaacatgtgcggtataaaaatgtatagaagtattgaagtacttcaatattttttggggcatattcttgagtatagtactatagcatgtgaacatgcacgttctaatttctaaggttgaatcatatatactgcagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggtaagcaatcgtgtctctttctgaggagtatgattacatgataatcctgagagccaaaaaaaaaaatcagtagttcactctgaattacatgtgatgcaggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaaggtttatattagctattttcagtactcctaatggccatgagaaaattgaaggcaaactttttagaaactatgaataatcttctgtttacagaaattattaacacgcattcttctatattatctattcgttaacactagaccgagcttctggagcagcagatagccaagctgaaagagaaggtatacagccgcaatcaatgcatattcctattccctatagcaatacatcaaactccatatatttttttccctaactctggatgttatttttttccttgcatctctctgatattaggagcggactttgcttaaagacaacgaaaatttacgcggaaaggtaatcaatgattatgaacaaccgcctgttatcaggcaaaacaacatatactgcaaactacctttttcttcttttatccagtaaagctgcacgtacagagtatatctgatatctcatgcatgtgctgatgtgcagcctaattatattatccaaataaccagattgatatatgacccatcaaccacaccattatttacatgtgcaattgattcatttttacaacaaacttaggctgtgtgacttatggcagaatctgagatataaacaatttccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 10]]<br /> [[Category:Chromosome 10]]</div>

Fayer https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig9.jpg&diff=170789 2014-05-22T12:21:18Z

<p>Fayer: Working model of long-day flowering signal pathway in rice. OsMADS50 promotes transition to reproductive stage by suppressing expression of OsLFL1 that is a repressor of Ehd1. OsMADS56 inhibits flowering by binding to OsMADS50. Ehd1 is also controlled by </p> <hr /> <div>Working model of long-day flowering signal pathway in rice. OsMADS50 promotes transition to reproductive stage by suppressing expression of OsLFL1 that is a repressor of Ehd1. OsMADS56 inhibits flowering by binding to OsMADS50. Ehd1 is also controlled by other genes, e.g. OsID1 and Ghd7.</div>

Fayer