http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Icelord11 2026-05-26T10:51:31Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183907 2014-06-11T07:19:02Z

<p>Icelord11: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved.<br /> <br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Wushan, Guangzhou 510642, P.R. China<br /> <br /> ==References==<br /> Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183906 2014-06-11T07:18:46Z

<p>Icelord11: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved.<br /> <br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Wushan, Guangzhou 510642, P.R. China<br /> <br /> ==References==<br /> Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> &lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183905 2014-06-11T07:18:25Z

<p>Icelord11: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved.<br /> <br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Wushan, Guangzhou 510642, P.R. China<br /> <br /> ==References==<br /> * &lt;ref name=&quot;ref1&quot;&gt;<br /> Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> &lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183904 2014-06-11T07:17:07Z

<p>Icelord11: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved.<br /> <br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Wushan, Guangzhou 510642, P.R. China<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183903 2014-06-11T07:16:23Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved.<br /> <br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183902 2014-06-11T07:15:58Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183901 2014-06-11T07:15:43Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:Different issue effect Os04g0629300 and other rice SNF2 grnes.jpg.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Pcr2.jpg&diff=183900 2014-06-11T07:12:27Z

<p>Icelord11: Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses. The rice actingene (OsAct1) was used as an internal control. CK - mock-treatments, KT - kinetin, 6-BA-6-benzyladenine, NAA -1-naphthaleneaceti</p> <hr /> <div> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses. The rice actingene (OsAct1) was used as an internal control. CK - mock-treatments, KT - kinetin, 6-BA-6-benzyladenine, NAA -1-naphthaleneacetic acid, 2,4-D-2,4-dichlorophenoxyacetic acid, Pac-paclobutrazol, SA-salicylicacid, IBA-3-indolebutyric acid, ABA-abscisic acid, GA3-gibberellic acid, PEG-polyethylene glycol.</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Pcr1.jpg&diff=183899 2014-06-11T07:09:15Z

<p>Icelord11: Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an internal control.</p> <hr /> <div> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an internal control.</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183898 2014-06-11T07:07:49Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> <br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> <br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> <br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> <br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:the map.jpg]]<br /> <br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Tree11.jpg&diff=183897 2014-06-11T07:06:21Z

<p>Icelord11: Rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes frommicroarray or RT-PCR. The letter R above the column of expression data refers to root, L refers to leaf, FP refers to floral primordium, YP ref</p> <hr /> <div>Rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes frommicroarray or RT-PCR. The letter R above the column of expression data refers to root, L refers to leaf, FP refers to floral primordium, YP refers to young panicle, MPrefers to mature panicle and A refers to anther. Domains were recognized by CDD at NCBI(http://www.ncbi.nlm.nih.gov/). Different domains are denoted by different shapes except SNF2_N and HELICc. The diagonal marks at the terminuses are the symbols of the truncated proteins. All the proteins were displayed in proportion. The protein sequence of Os06g0255300 was too long to show the full length in this figure, so part of it was replaced by the diagonal marks. The unrooted similarity tree was generated by aligning the predicted amino acid sequences of all rice SNF2 proteins using MEGA 4.0program by the Neighbor-Joining method. The bootstrap test of the inferred phylogeny was carried out with 1 000 replications and the bar indicates 0.2 substitution per site</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183896 2014-06-11T07:03:47Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree11.jpg]]<br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:the map.jpg]]<br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183895 2014-06-11T07:02:35Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:tree.jpg]]<br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:pcr1.jpg]]<br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:pcr2.jpg]]<br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:the map.jpg]]<br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183894 2014-06-11T07:01:20Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Following picture shows that rice SNF2 protein domain architectures, sequence similarity tree and expression patterns for rice SNF2genes from<br /> microarray or RT-PCR.<br /> [[File:1.jpg]]<br /> Tissue-specific expression patterns of the eight SNF2genes detected by RT-PCR. The rice Actingene (OsAct1) was used as an <br /> internal control.<br /> [[File:2.jpg]]<br /> Expression profiles of the eight SNF2genes detected by RT-PCR under phytohormonetreatments and abiotic stresses<br /> [[File:3.jpg]]<br /> Os02g0114000was more abundant in floral primordial, young panicles, leaves and roots than in stems and mature <br /> mature panicles and anthers.<br /> The probable cross-talk draft in which the eight genes were involved<br /> [[File:4.jpg]]<br /> Os02g0114000 showed no response to any exogenous phytohormone treatment. Os02g0114000was the only gene whose transcript abundance appeared not significantly changed under any stress. Os02g0114000 exhibited no responses to both phytohormones and abiotic stresses. It is infered that this gene may be requisite for maintaining basic physiological activities.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0114000&diff=183889 2014-06-11T06:48:24Z

<p>Icelord11: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os02g0114000 is one of SNF2 family genes.The catalytic subunits of chromatin remodeling complexes belong to the SNF2 family of DNA-dependent ATPases.Their catalytic core consists of two characteristic domains, the SNF2_N domain located at the N-terminus and the Helic C domain located at the C-terminus. Now there are five classes of ATP-dependent chromatin remodelers operating in eukaryotes: SWI/SNF, ISWI, CHD1, SWR1 and RAD54.The first SWI/SNF ATPase was found in ''Saccharomyces cerevisiaemutants'' which showed sucrose-nonfermenting and mating type switching defective phenotypes, thus the SNF2 family has got its name. The studies in single-cell organisms, invertebrates and mammals have indicated that SWI/SNF ATPases are essential for transcriptional reprogramming, morphogenesis, early embryo develop-ment, patterning and differentiation throughout development. In plants, detailed research on two viable null mutants of SWI/SNF ATPases,SPLAYED (SYD) and BRAHMA (BRM), in ''Arabidopsis thaliana'', improved our information on critical roles of plant SWI/SNF ATPases. Both SYD and BRM regulate stem cell maintenance, patterning (alteration of leaf polarity, flower morphogenesis and ovule development), develop-mental transitions (precocious onset of reproductive development) and growth (small stature, slow growth and reduced apical dominance), while BRM also controls root growth and male fertility. Recently SYD has been found to be also required for selective pathogen resistance and regulation of the specific pathways within biotic stress signaling networks. ATCHR12, another SWI/SNF ATPase in A. thaliana, has been demonstrated to play a vital role in mediating the temporary growth arrest of Arabidopsisupon perception of environmental stresses. All these three SWI/SNF ATPases have an HSA domain at the N-terminus, lately shown to mediate critical interactions required for SWI/SNF-dependent trans-criptional activation. BRM also have a C-terminal BROMO domain found to target remodeling complexes to hyperacetylated chromatin in yeast.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os02g0114000|<br /> Description = Bromodomain containing protein|<br /> Version = NM_001052200.2 GI:297598474 GeneID:4328058|<br /> Length = 2692 bp|<br /> Definition = Oryza sativa Japonica Group Os02g0114000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br /> AP = Chromosome 2:748726..751417|<br /> CDS = 749122..749799,750123..750371,751380..751415|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008395:748726..751417<br /> source=RiceChromosome02<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;agtggaacaaagatgtctgacagtatgcaaagaaagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNEN SSFKGLASSTLDLQKIEQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAET LHNLFFNIMKIAFPDSDFREAKGAMSFSNPGGGASGSAAQSTKQSASGQKRRSSTSEA EQHGSSTSRHNQHAPVGEVSGRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFI VKKKRDRRPSLGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSMHSA GWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTDSGKRRPSHM&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;1619..2296#1047..1295#3..38#caagtggaacaaagatgtctgacagtatgcaaagaaaggtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatattgaacttcggcaaggaatactttgtagaatttagtatactctgtcgtgtaagcatcatcttaagaaagatggttccgccttcaaaatagcagagccatgatccttccaaatgtaggaatagaccattttagtatgcaatagacaaacgctagctaaaaactgccaccacacatggcttggtccctgctcgttaaacgttgccgagcatggaaaactagaacagatgagcaatatatcaaggaagcaatgttctttttaccttggaaacataaatggatctgcagttttctatagaagtataatacttgcctaaaatcttgtaaaatatttattcggactgttaactcaacttgataacataaatatggaagttaaatgttgcctacataccgggatagttgaggtctaccaaatatactgcattgctaggtaaatctcgactgctatctgcttgcattagcaaaagagccaagtatgacgccgcttatttcatgtggtgttttcacattgttctacaatcataacaacgtaagtcccgtgcagtggttgtggggtgcacgtgaagtggtgtggactatttcatgactattgcctgtttttgcttatactgattactagtgtagtttttggatatcatttattactacagcttatccgttgtgttgattttgttgtagattccttttgccatttggtttggctcatattgtttgccttcttttttttttgactgcttttgcttacactgattactagtgtagtttttggatatcatttattactacagcttatcttaatgttgaggttgtctcaattttgttgtaattcctttcgcaaatggtttggctcgtattgtttgcctttttaacagctctttatagctaagcgtttctcattcaatacctgcagtgcaagaacgtgataaacaagctttggaggaggattgacaaagagggtcatcaaatcataccaaatatatcttcttggtggcgtaggaacgagaattcctcattcaaaggtttggctagcagcacccttgatctacagaaaattgaacaacgagttgatggatttgagtatggcggtgtgaatgaattcatagctgacatgcagcagatgctgaaaagtgtggttcaacatttcagctataggcatgaggtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatggtcgccatcaagtttgttgacattctctctctacttggtactgattactatttaaaattcagaagaactgcgtagctttctgtattcctgaagaaaaccatgttgacttaatagaataagataccacgacatacttgcacagactctaattctgtgaattcatacttctctaacttctgatagtctgactggtgtactcgtgaatttgctcctacaaaatgcaggtccgagtagaagctgagaccctccacaacttatttttcaatataatgaagattgcctttccggactcagacttcagagaagctaagggtgctatgtcattttcgaatcctggaggaggtgcaagtggctctgctgcgcaatcaacaaagcaatctgcttcaggccagaaacgtcgttcaagcaccagtgaagcggagcagcatggttcaagcactagcagacacaatcagcatgcaccagttggtgaggtttcaggccgggcccacacttcaaaatctgagaaggactcccggcattctggaccaggtagcagggaacagttcacggatagcgcagggctgttcaggcaccctacagatatgttcatagttaagaagaagagagatcgaaggccgagcctggggtctccatccagttcaggccgaactggaccgctctccccgaccaacgccgggcggatgggaccggcgccatcacctagaggtgccaggacgcccttccaaagagatccacacccttctcagcagtctatgcattcagctggatggggtgctcattctgtgcagcaatctgatcgtggggggagttcatcacccggcattggagacatccagtgggctaaacctaccaagagatcgaggactgatagtggcaaaagacggccaagccatatgtgaaaaagaaaagagggattgttattcttggcattgcggtgtacattccttagcacccttgaatcttgattgacctctctacccgctgctgattctggagcccattggcctggttttgacacccatttcttcgtcgccattcctgccatccttcaaagaagttatcacgaccgtctgggactgacttgtgttgtcatggacattgtgggaaatgtgggtaggagtaatcgttcttgtatgttggtattttctgtaaagggcaaacacatttaatcttgttctctgttgactgttaagtagcgctccatccaactggagatgtgatggcgatctcatgtcatgatgatgtagtttagtagccatggaatgaaatgaaatgaagctgagccggttataata&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052200.2 RefSeq:Os02g0114000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 2]]<br /> [[Category:Chromosome 2]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182486 2014-06-09T12:53:36Z

<p>Icelord11: /* Labs working on this gene */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> [[File:different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> 1.State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, <br /> College of Life Sciences, South China Agricultural University, Wushan, Guangzhou 510642, P.R. China<br /> 2.Department of Life Sciences, Luoyang Normal University, Henan 471022, RP China<br /> 3.Life Science and Environment Science Research Center, Harbin University of Commerce, Harbin 150076, RP China<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Different_issue_effect_Os04g0629300_and_other_rice_SNF2_grnes.jpg&diff=182464 2014-06-09T12:45:21Z

<p>Icelord11: The probable cross-talk draft in which the eight genes were involved. Their regulationsin phytohormone and stress signaling pathways were designated with different types of broken lines. The two Snf2 members were displayed with speckle shadows while the </p> <hr /> <div>The probable cross-talk draft in which the eight genes were involved. Their regulationsin phytohormone and stress signaling pathways were designated with different types of broken lines. The two Snf2 members were displayed with speckle shadows while the two Ris1 subfamily genes were shown with plain shadows. The two cytokinin-category and three auxin-category phytohormones were oval-shaded, respectively.</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182453 2014-06-09T12:41:32Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> [[File:different issue effect Os04g0629300 and other rice SNF2 grnes.jpg]]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> 1.State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, <br /> College of Life Sciences, South China Agricultural University.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182430 2014-06-09T12:35:43Z

<p>Icelord11: /* Labs working on this gene */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> 1.State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, <br /> College of Life Sciences, South China Agricultural University.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182417 2014-06-09T12:31:25Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> College of Life Sciences.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182407 2014-06-09T12:29:48Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> [[File:Example.jpg]]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> College of Life Sciences.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=182401 2014-06-09T12:28:02Z

<p>Icelord11: /* Expression */</p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> [[File:C:\Users\Administrator\Desktop\4\1.png]]<br /> Fig. 1. The probable cross-talk draft in which the eight genes were involved. Their regulationsin phytohormone and stress signaling <br /> pathways were designated with different types of broken lines. The two Snf2 members were displayed with speckle shadows while <br /> the two Ris1 subfamily genes were shown with plain shadows. The two cytokinin-category and three auxin-category phytohormones <br /> were oval-shaded, respectively.[1]<br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> College of Life Sciences.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

Icelord11 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0629300&diff=176947 2014-06-03T14:22:03Z

<p>Icelord11: </p> <hr /> <div>Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]<br /> <br /> ===Expression===<br /> Os04g0629300 is a root-specific gene. [1]<br /> Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1]<br /> <br /> <br /> ===Evolution===<br /> Os04g0629300 is highly conserved. [2]<br /> <br /> ==Labs working on this gene==<br /> College of Life Sciences.<br /> <br /> ==References==<br /> 1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633.<br /> 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究<br /> 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os04g0629300|<br /> Description = DEAD/DEAH box helicase, N-terminal domain containing protein|<br /> Version = NM_001060501.1 GI:115460731 GeneID:4337089|<br /> Length = 6868 bp|<br /> Definition = Oryza sativa Japonica Group Os04g0629300, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br /> AP = Chromosome 4:32408075..32414942|<br /> CDS = 32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803&lt;br&gt;,32411356..32412364,32412449..32412523,32412614..32412685,32412772..32412947&lt;br&gt;,32413113..32413265,32413358..32413853|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008397:32408075..32414942<br /> source=RiceChromosome04<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060501.1 RefSeq:Os04g0629300]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 4]]<br /> [[Category:Chromosome 4]]</div>

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