http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Li150706345 2026-08-27T14:08:01Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169879 2014-05-20T01:19:49Z

<p>Li150706345: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|right|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> *Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> <br /> *The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> *Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> <br /> *Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> <br /> [[File:lzh3.png|200px|thumb|right|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> <br /> *Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> *Transgenic Crop Research and Development Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2,<br /> Tsukuba, Ibaraki 305-8602, Japan<br /> <br /> <br /> *Rice Biotechnology Research Team, National Institute of Crop Science, Tsukuba, Ibaraki, Japan<br /> <br /> <br /> *Transgenic Crop Research and Development Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan<br /> <br /> <br /> *Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba,<br /> Ibaraki, 305-8602, Japan<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169871 2014-05-19T16:30:26Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|right|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> *Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> <br /> *The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> *Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> <br /> *Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> <br /> [[File:lzh3.png|200px|thumb|right|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> <br /> *Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169870 2014-05-19T16:29:53Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|right|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|left|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> *Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> <br /> *The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> *Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> <br /> *Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> <br /> [[File:lzh3.png|200px|thumb|right|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> <br /> *Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169869 2014-05-19T16:29:00Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|right|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|left|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> *Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> <br /> *The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169868 2014-05-19T16:28:25Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> *Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> <br /> *The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169867 2014-05-19T16:27:02Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> *Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> <br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> <br /> *Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> <br /> *Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> <br /> <br /> *Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> <br /> *The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169861 2014-05-19T16:20:52Z

<p>Li150706345: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Hayashi, Shimpei, Takahashi, Hideyuki, Wakasa, Yuhya, Kawakatsu, Taiji, &amp; Takaiwa, Fumio. (2013). Identification of acis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice. The Plant Journal, 74(2), 248-257. doi: 10.1111/tpj.12117<br /> <br /> Hu, J., Zhou, J., Peng, X., Xu, H., Liu, C., Du, B., . . . He, G. (2011). The Bphi008a Gene Interacts with the Ethylene Pathway and Transcriptionally Regulates MAPK Genes in the Response of Rice to Brown Planthopper Feeding. Plant Physiology, 156(2), 856-872. doi: 10.1104/pp.111.174334<br /> <br /> Lu, S. J., Yang, Z. T., Sun, L., Sun, L., Song, Z. T., &amp; Liu, J. X. (2012). Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 5(2), 504-514. doi: 10.1093/mp/ssr115<br /> <br /> Oono, Youko, Wakasa, Yuhya, Hirose, Sakiko, Yang, Lijun, Sakuta, Chiyoko, &amp; Takaiwa, Fumio. (2010). Analysis of ER stress in developing rice endosperm accumulating β-amyloid peptide. Plant Biotechnology Journal, 8(6), 691-718. doi: 10.1111/j.1467-7652.2010.00502.x<br /> <br /> Takahashi, H., Kawakatsu, T., Wakasa, Y., Hayashi, S., &amp; Takaiwa, F. (2012). A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol, 53(1), 144-153. doi: 10.1093/pcp/pcr157<br /> <br /> Wakasa, Y., Yasuda, H., Oono, Y., Kawakatsu, T., Hirose, S., Takahashi, H., . . . Takaiwa, F. (2011). Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J, 65(5), 675-689. doi: 10.1111/j.1365-313X.2010.04453.x<br /> <br /> Yang, Y. G., Lv, W. T., Li, M. J., Wang, B., Sun, D. M., &amp; Deng, X. (2013). Maize Membrane-Bound Transcription Factor Zmbzip17 is a Key Regulator in the Cross-Talk of ER Quality Control and ABA Signaling. Plant and Cell Physiology, 54(12), 2020-2033. doi: 10.1093/pcp/pct142<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169859 2014-05-19T16:08:44Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> The Os06g0622700<br /> as well as several protein folding-related genes that are<br /> regulated by OsbZIP50, such as Os08g0197700 (BiP paralog)<br /> and Os11g0197700 (PDI like 1-1) (Wakasa et al. 2011).<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169857 2014-05-19T16:06:37Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> Figure3:(a) Structure of ZmbZIP17 and ZmbZIP17�C. The map of the full-length ZmbZIP17 indicates the<br /> location of the putative bZIP, nuclear localization signal (NLS), transmembrane domains (TMDs) and the canonical S1P site. The map of the<br /> truncated protein ZmbZIP17�C indicates the deletion of TMDs and S1P domains. (b) Alignment of protein sequences for ZmbZIP17 and<br /> the known membrane-associated bZIP transcription factors. (c) The unrooted phylogenetic tree of ER stress-associated bZIP factors<br /> from Arabidopsis, rice and maize. The bZIP factors in (b) and (c) were AtbZIP17 (At2g40950), AtbZIP49 (At3g56660), AtbZIP28 (At2g17770),<br /> AtbZIP60 (AT1G42990), OsbZIP39 (Os05g34050), OsbZIP50 (Os06g0622700), OsbZIP60 (Os07g44950), ZmbZIP17 (BT040011), ZmbZIP28<br /> (BT067808) and ZmbZIP60 (BT086464).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Lzh3.png&diff=169855 2014-05-19T16:05:25Z

<p>Li150706345: </p> <hr /> <div></div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169854 2014-05-19T16:05:04Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.png|200px|thumb|left|Figure3.Structure of ZmbZIP17, and the alignment and phylogenetic tree generated with ER stress-associated membrane-associated bZIP<br /> factors from Arabidopsis, rice and maize.]]<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169853 2014-05-19T16:03:59Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> [[File:lzh3.jpg]]<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169852 2014-05-19T16:02:50Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169843 2014-05-19T15:44:46Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> [http://www.ncbi.nlm.nih.gov/clone/?term=Os06g0622700NCBI]===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169842 2014-05-19T15:41:17Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> Os03g0102200 is a 14.5-kD<br /> polypeptide that is similar to DNA-directed RNA<br /> polymerase II, SDRP, while<br /> Os06g0622700 is a bZIP (for basic Leu zipper) transcription<br /> factor that shows the highest homology to<br /> AtbZIP60 in Arabidopsis (Supplemental Fig. S6), so<br /> we renamed it OsbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169839 2014-05-19T15:37:41Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> The early stage of the ER stress response in rice is mediated<br /> by OsbZIP50 (Os06g0622700), OsbZIP39 (Os05g0411300)<br /> and OsbZIP60 (Os07g0644100).<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169835 2014-05-19T15:25:43Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.<br /> <br /> [[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169833 2014-05-19T15:25:00Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|Figure1.RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> Figure1:(a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|right|Figure2.Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]]<br /> Figure2:(a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169832 2014-05-19T15:23:50Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|right|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]](a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169831 2014-05-19T15:23:28Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|middle|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|right|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]](a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169830 2014-05-19T15:22:56Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|right|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]](a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169829 2014-05-19T15:22:31Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ]]<br /> <br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|left|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> ]](a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169826 2014-05-19T15:20:58Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> ].]]<br /> <br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|left|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> (a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.]]<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169824 2014-05-19T15:19:45Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|left|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> (a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.]]<br /> <br /> ===Expression===<br /> Expression of many chaperone genes induced<br /> by the major BiP1 may be mainly mediated by binding of<br /> Os06g0622700 to UPRE or ERSE cis-elements, as expression<br /> ofmanychaperone genes induced byDTTtreatmentwasalso<br /> regulated by the Os06g0622700 bZIP transcription factor.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Lzh2.png&diff=169822 2014-05-19T15:16:31Z

<p>Li150706345: </p> <hr /> <div></div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169820 2014-05-19T15:16:05Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png|200px|thumb|left|Effect of Os06g0622700 on some chaperone gene promoters in rice<br /> suspension cultured cells.<br /> (a) Effector, reporter and control vector constructs are shown.<br /> Os06g0622700DC is the active form of the protein.<br /> (b) Fold change in GUS activity after transient expression.]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169815 2014-05-19T15:13:22Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. The Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> Os06g0622700 is one of the most important transcription<br /> factors involved in signal transduction of the ER stress<br /> response in rice.[[File:lzh2.png]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169807 2014-05-19T15:08:04Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169806 2014-05-19T15:07:45Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169805 2014-05-19T15:06:06Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|RT-PCR expression profile of a rice<br /> bZIP transcription factor containing a TMD.<br /> (a) Expression during seed development.<br /> (b) Expression under ER stress conditions in<br /> callus.<br /> (c) Induction of GUS activity by T2 callus containing<br /> the Os06g0622700 promoter:GUS construct<br /> after treatment with 2 mM DTT for 6 h. The<br /> photographs on the bottom left show GUSstained<br /> calli with or without DTT treatment (scale<br /> bars = 1 mm). The bottom right panel shows<br /> quantitative measurement of GUS activity in<br /> these calli [4-methylumbelliferone (4-MU) production<br /> rate over 1 h].]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Lzh1.png&diff=169804 2014-05-19T15:04:40Z

<p>Li150706345: </p> <hr /> <div></div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169802 2014-05-19T15:00:38Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.png|200px|thumb|left|替换文字]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169801 2014-05-19T14:59:00Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:lzh1.jpg]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169800 2014-05-19T14:58:00Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 1b and c). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 1b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169799 2014-05-19T14:56:08Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> We have discovered three bZIP genes that may encode<br /> transcription factors with TMDs in the rice genome:<br /> Os06g0622700 is a homolog of ATbZIP60, and Os05g0411300<br /> and Os07g0644100 share homology with ATbZIP17 and<br /> ATbZIP28. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 6b,c and Figure S6). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 6b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169798 2014-05-19T14:54:39Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> We have discovered three bZIP genes that may encode<br /> transcription factors with TMDs in the rice genome:<br /> Os06g0622700 is a homolog of ATbZIP60, and Os05g0411300<br /> and Os07g0644100 share homology with ATbZIP17 and<br /> ATbZIP28. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 6b,c and Figure S6). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 6b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:1.jpg]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169797 2014-05-19T14:53:39Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> We have discovered three bZIP genes that may encode<br /> transcription factors with TMDs in the rice genome:<br /> Os06g0622700 is a homolog of ATbZIP60, and Os05g0411300<br /> and Os07g0644100 share homology with ATbZIP17 and<br /> ATbZIP28. Expression profiles of these transcription factors<br /> obtained by microarray analyses showed that expression of<br /> Os06g0622700 was 1.9-fold enhanced by suppression of<br /> BiP1 and 3.3-fold enhanced by over-expression of BiP1<br /> compared to wild-type. RT-PCR analysis of Os06g0622700<br /> expression in these transgenic rice seeds at 14 DAF also<br /> supported this result. As shown in Figure 6(a), the transcript<br /> abundance of Os06g0622700 in these transgenic seeds<br /> during maturation was significantly higher than that of wildtype.<br /> Furthermore, transcript levels of Os06g0622700 in rice<br /> calli were increased by treatment with DTT or tunicamycin<br /> (Figure 6b,c and Figure S6). By contrast, transcript levels of<br /> the other two bZIPs exhibited little difference between these<br /> transgenic lines and wild-type rice. Treatment of calli with<br /> DTT or tunicamycin also led to no significant change in<br /> expression of the two bZIPs (Figure 6b). These results<br /> suggested that the Os06g0622700 bZIP transcription factor<br /> plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.<br /> [[File:Example.jpg]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169790 2014-05-19T14:41:25Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> In transient assays using rice protoplasts, the ortholog (Os06g0622700) of the AtbZIP60<br /> transcription factor was shown to be involved in activation of some chaperone genes.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Os06g0622700 is a homolog of ATbZIP60.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169782 2014-05-19T14:28:21Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> ===Expression===<br /> <br /> ===Evolution===<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169781 2014-05-19T14:28:09Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> ===Expression===<br /> <br /> ===Evolution===<br /> Calnexin (Os04g0402100);PDIL1-1(Os11g0199200);<br /> ERdj3B-like (Os05g0156500); SDF2-like (Os08g0278900); Ero1<br /> (Os03g0733800); Fes1-like (Os09g0512700); and SAR1B-like<br /> (Os06g0225000).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169779 2014-05-19T14:27:56Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> ===Expression===<br /> Os05g0156500 (OsERdj3B) encodes a polypeptide with 347<br /> amino acid residues, which contains an N-terminal J-domain,<br /> a zinc finger motif, and a DnaJ C-terminal domain (CTD;<br /> Supplementary Fig. S2 at JXB online).<br /> <br /> ===Evolution===<br /> Calnexin (Os04g0402100);PDIL1-1(Os11g0199200);<br /> ERdj3B-like (Os05g0156500); SDF2-like (Os08g0278900); Ero1<br /> (Os03g0733800); Fes1-like (Os09g0512700); and SAR1B-like<br /> (Os06g0225000).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0622700&diff=169763 2014-05-19T14:07:56Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> In transient assays using rice protoplasts, the ortholog (Os06g0622700) of the AtbZIP60<br /> transcription factor was shown to be involved in activation of some chaperone genes.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0622700|<br /> Description = Eukaryotic transcription factor, DNA-binding domain containing protein|<br /> Version = NM_001064635.1 GI:115469001 GeneID:4341554|<br /> Length = 1991 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0622700, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:25918948..25920938|<br /> CDS = 25918979..25919418,25919822..25920042,25920504..25920757|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:25918948..25920938<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064635.1 RefSeq:Os06g0622700]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169702 2014-05-19T09:17:58Z

<p>Li150706345: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> expression of an ERDJ3-like<br /> gene (Os05g0156500) that also functions with BiP as a<br /> co-chaperone to assist nascent protein folding was not<br /> different between the wild-type and transgenic seeds.<br /> Stt3a (Os04g0675500) and UDP-glucose transporter<br /> (Os06g0593100), the products of which are involved in a<br /> renewed association with calnexin and calreticulin, and<br /> the ERAD-related Derlin gene (Os03g0852200) were<br /> up-regulated in BiP1 OEmax and BiP1 KD transgenic seeds.<br /> Expression of the cell death marker gene, Hsr203j<br /> (Os01g0155000), was induced in both the over-expression<br /> and suppression lines.<br /> <br /> ===Expression===<br /> Os05g0156500 (OsERdj3B) encodes a polypeptide with 347<br /> amino acid residues, which contains an N-terminal J-domain,<br /> a zinc finger motif, and a DnaJ C-terminal domain (CTD;<br /> Supplementary Fig. S2 at JXB online).<br /> <br /> ===Evolution===<br /> Calnexin (Os04g0402100);PDIL1-1(Os11g0199200);<br /> ERdj3B-like (Os05g0156500); SDF2-like (Os08g0278900); Ero1<br /> (Os03g0733800); Fes1-like (Os09g0512700); and SAR1B-like<br /> (Os06g0225000).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169701 2014-05-19T09:16:43Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> expression of an ERDJ3-like<br /> gene (Os05g0156500) that also functions with BiP as a<br /> co-chaperone to assist nascent protein folding was not<br /> different between the wild-type and transgenic seeds.<br /> Stt3a (Os04g0675500) and UDP-glucose transporter<br /> (Os06g0593100), the products of which are involved in a<br /> renewed association with calnexin and calreticulin, and<br /> the ERAD-related Derlin gene (Os03g0852200) were<br /> up-regulated in BiP1 OEmax and BiP1 KD transgenic seeds.<br /> Expression of the cell death marker gene, Hsr203j<br /> (Os01g0155000), was induced in both the over-expression<br /> and suppression lines.<br /> <br /> ===Expression===<br /> Os05g0156500 (OsERdj3B) encodes a polypeptide with 347<br /> amino acid residues, which contains an N-terminal J-domain,<br /> a zinc finger motif, and a DnaJ C-terminal domain (CTD;<br /> Supplementary Fig. S2 at JXB online).<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169697 2014-05-19T09:15:07Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> expression of an ERDJ3-like<br /> gene (Os05g0156500) that also functions with BiP as a<br /> co-chaperone to assist nascent protein folding was not<br /> different between the wild-type and transgenic seeds.<br /> Stt3a (Os04g0675500) and UDP-glucose transporter<br /> (Os06g0593100), the products of which are involved in a<br /> renewed association with calnexin and calreticulin, and<br /> the ERAD-related Derlin gene (Os03g0852200) were<br /> up-regulated in BiP1 OEmax and BiP1 KD transgenic seeds.<br /> Expression of the cell death marker gene, Hsr203j<br /> (Os01g0155000), was induced in both the over-expression<br /> and suppression lines.<br /> <br /> ===Expression===<br /> I have chosen this gen.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169693 2014-05-19T09:10:55Z

<p>Li150706345: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> I have chosen this gen.<br /> <br /> ===Expression===<br /> I have chosen this gen.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0156500&diff=169691 2014-05-19T09:10:40Z

<p>Li150706345: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> I have chosen this gen.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0156500|<br /> Description = Similar to Apobec-1 binding protein 2|<br /> Version = NM_001061232.1 GI:115462194 GeneID:4337860|<br /> Length = 1994 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:3283758..3285751|<br /> CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367&lt;br&gt;|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:3283758..3285751<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

Li150706345