Please input one-sentence summary here.

==Annotated Information==
===first===
===Function===
[[File:pair3_dffi.jpg|right|thumb|275px|'''Figure 1.''' '' Comparison of morphological characters between ddf1-1 and wild-type plants .(from reference)<ref name="ref1" />).'']]
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 2.''' '' Histological characterization of the leaf, root and stem of ddf1-1 plants .(from reference)<ref name="ref1" />).'']]
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1. <ref name="ref1" />The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.<ref name="ref3" />The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes<ref name="ref2" />.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===
[[File:pair3_11.jpg|right|thumb|275px|'''Figure 3.''' '' ddf1-1, all the mutant phenotypes (including dwarf stature,smaller stems, leaves, roots and panicles, and aberrant spikelet) were rescued (Figure 6d,e). Thus, the DDF1 gene was confirmed. .(from reference)<ref name="ref1" />).'']]
discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1)<ref name="ref2" /><ref name="ref1" />. All vegetative organs in ddf1-1, including stems<ref name="ref1" />, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller,<ref name="ref1" /> consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet<ref name="ref1" />, the numbers of various vegetative organs<ref name="ref1" /><ref name="ref2" /> (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===

You can also add sub-section(s) at will.
Studies have indicated that F-box genes play crucial roles in a number of biological processes in plants,including flower development, self-incompatibility, hormone，response, circadian clock and photomorphogenesis,senescence, defense response, embryogenesis and seedling development (Moon et al., 2004; Lechner et al., 2006;Jain et al., 2007; Schumann et al., 2011). Until now, however,our knowledge about the functions of F-box genes in plants has remained very limited. Fewer than 5% inArabidopsis F-box proteins (Schumann et al., 2011) and only a few proteins in Oryza sativa (rice; Gomi et al., 2004; ª 2012 The Authors 829The Plant Journal ª 2012 Blackwell Publishing LtdThe Plant Journal (2012) 72, 829–842 doi: 10.1111/j.1365-313X.2012.05126.xIkeda et al., 2007; Jain et al., 2007) have been characterizedfor their functions.The model is also applicable to rice, with modifications,although monocot flowers are quite different from eudicot in morphology(Ambrose et al., 2000; Lee et al., 2003; Nagasawa et al., 2003; Whipple et al., 2004; Kater et al., 2006; Yamaguchi et al., 2006; Dreni et al., 2007; Ikeda
et al., 2007). In rice, the functions of B-class genes OsMADS4 and OsMADS16 were proven to be largely conserved (Nagasawa et al., 2003), whereas the functions of C-class genes OsMADS3 and OsMADS58 were shown to have diverged from the Arabidopsis AGAMOUS gene, and the carpel specification appeared to be mainly determined by a
distinct non-MADS-box homeotic gene DROOPINGLEAF (DL; Yamaguchi et al., 2004, 2006). Nevertheless, a recent study on the Osmads3 Osmads58 double mutant suggestedthat the two genes together exhibit a complete C-function in rice (Dreni et al., 2011).
===Labs working on this gene===

*Plant materials
*Microscopic observation
*Scanning electron microscopy observation
*Positional cloning of DDF1
*Promoter activity analysis
*Subcellular localization
*Real-time quantitative PCR
*mRNA in situ hybridization

==References==
<references>
<ref name="ref1">Yuanlin Duan1, Shengping Li1, Zhiwei Chen1. (2012)Dwarf and deformed flower 1, encoding an F-box protein,is critical for vegetative and floral development in rice(Oryza sativa L.). The Plant Journal， 72： 829–842</ref>
<ref name="ref2">李生平1, 段远霖1,2, 陈志伟. (2011) 水稻生长发育多效基因DDF1 的遗传分析与基因定位. 33(12): 1374―1379.</ref>
<ref name="ref3">Ambrose, B.A., Lerner, D.R., Ciceri, P., Padilla, C.M., Yanofsky, M.F. andSchmidt, R.J. (2000) Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots. Mol. Cell, 5： 569–579.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0139000

2014-05-13T10:14:01Z

Lilly3850: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:pair3_dffi.jpg|right|thumb|275px|'''Figure 1.''' '' Comparison of morphological characters between ddf1-1 and wild-type plants .(from reference)<ref name="ref1" />).'']]
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 2.''' '' Histological characterization of the leaf, root and stem of ddf1-1 plants .(from reference)<ref name="ref1" />).'']]
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1. <ref name="ref1" />The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.<ref name="ref3" />The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes<ref name="ref2" />.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===

The mutant ddf1-1 was discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1)<ref name="ref2" /><ref name="ref1" />. All vegetative organs in ddf1-1, including stems<ref name="ref1" />, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller,<ref name="ref1" /> consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet<ref name="ref1" />, the numbers of various vegetative organs<ref name="ref1" /><ref name="ref2" /> (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===

You can also add sub-section(s) at will.
Studies have indicated that F-box genes play crucial roles in a number of biological processes in plants,including flower development, self-incompatibility, hormone，response, circadian clock and photomorphogenesis,senescence, defense response, embryogenesis and seedling development (Moon et al., 2004; Lechner et al., 2006;Jain et al., 2007; Schumann et al., 2011). Until now, however,our knowledge about the functions of F-box genes in plants has remained very limited. Fewer than 5% inArabidopsis F-box proteins (Schumann et al., 2011) and only a few proteins in Oryza sativa (rice; Gomi et al., 2004; ª 2012 The Authors 829The Plant Journal ª 2012 Blackwell Publishing LtdThe Plant Journal (2012) 72, 829–842 doi: 10.1111/j.1365-313X.2012.05126.xIkeda et al., 2007; Jain et al., 2007) have been characterizedfor their functions.The model is also applicable to rice, with modifications,although monocot flowers are quite different from eudicot in morphology(Ambrose et al., 2000; Lee et al., 2003; Nagasawa et al., 2003; Whipple et al., 2004; Kater et al., 2006; Yamaguchi et al., 2006; Dreni et al., 2007; Ikeda
et al., 2007). In rice, the functions of B-class genes OsMADS4 and OsMADS16 were proven to be largely conserved (Nagasawa et al., 2003), whereas the functions of C-class genes OsMADS3 and OsMADS58 were shown to have diverged from the Arabidopsis AGAMOUS gene, and the carpel specification appeared to be mainly determined by a
distinct non-MADS-box homeotic gene DROOPINGLEAF (DL; Yamaguchi et al., 2004, 2006). Nevertheless, a recent study on the Osmads3 Osmads58 double mutant suggestedthat the two genes together exhibit a complete C-function in rice (Dreni et al., 2011).
===Labs working on this gene===

*Plant materials
*Microscopic observation
*Scanning electron microscopy observation
*Positional cloning of DDF1
*Promoter activity analysis
*Subcellular localization
*Real-time quantitative PCR
*mRNA in situ hybridization

==References==
<references>
<ref name="ref1">Yuanlin Duan1, Shengping Li1, Zhiwei Chen1. (2012)Dwarf and deformed flower 1, encoding an F-box protein,is critical for vegetative and floral development in rice(Oryza sativa L.). The Plant Journal， 72： 829–842</ref>
<ref name="ref2">李生平1, 段远霖1,2, 陈志伟. (2011) 水稻生长发育多效基因DDF1 的遗传分析与基因定位. 33(12): 1374―1379.</ref>

</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0139000

2014-05-13T04:05:08Z

Lilly3850: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:pair3_dffi.jpg|right|thumb|275px|'''Figure 1.''' '' Comparison of morphological characters between ddf1-1 and wild-type plants .(from reference)<ref name="ref1" />).'']]
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 2.''' '' Histological characterization of the leaf, root and stem of ddf1-1 plants .(from reference)<ref name="ref1" />).'']]
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1. <ref name="ref1" />The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.<ref name="ref3" />The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes<ref name="ref2" />.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===

The mutant ddf1-1 was discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1)<ref name="ref2" /><ref name="ref1" />. All vegetative organs in ddf1-1, including stems<ref name="ref1" />, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller,<ref name="ref1" /> consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet<ref name="ref1" />, the numbers of various vegetative organs<ref name="ref1" /><ref name="ref2" /> (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===

You can also add sub-section(s) at will.
Studies have indicated that F-box genes play crucial roles in a number of biological processes in plants,including flower development, self-incompatibility, hormone，response, circadian clock and photomorphogenesis,senescence, defense response, embryogenesis and seedling development (Moon et al., 2004; Lechner et al., 2006;Jain et al., 2007; Schumann et al., 2011). Until now, however,our knowledge about the functions of F-box genes in plants has remained very limited. Fewer than 5% inArabidopsis F-box proteins (Schumann et al., 2011) and only a few proteins in Oryza sativa (rice; Gomi et al., 2004; ª 2012 The Authors 829The Plant Journal ª 2012 Blackwell Publishing LtdThe Plant Journal (2012) 72, 829–842 doi: 10.1111/j.1365-313X.2012.05126.xIkeda et al., 2007; Jain et al., 2007) have been characterizedfor their functions.The model is also applicable to rice, with modifications,although monocot flowers are quite different from eudicot in morphology(Ambrose et al., 2000; Lee et al., 2003; Nagasawa et al., 2003; Whipple et al., 2004; Kater et al., 2006; Yamaguchi et al., 2006; Dreni et al., 2007; Ikeda
et al., 2007). In rice, the functions of B-class genes OsMADS4 and OsMADS16 were proven to be largely conserved (Nagasawa et al., 2003), whereas the functions of C-class genes OsMADS3 and OsMADS58 were shown to have diverged from the Arabidopsis AGAMOUS gene, and the carpel specification appeared to be mainly determined by a
distinct non-MADS-box homeotic gene DROOPINGLEAF (DL; Yamaguchi et al., 2004, 2006). Nevertheless, a recent study on the Osmads3 Osmads58 double mutant suggestedthat the two genes together exhibit a complete C-function in rice (Dreni et al., 2011).
===Labs working on this gene===

*Plant materials
*Microscopic observation
*Scanning electron microscopy observation
*Positional cloning of DDF1
*Promoter activity analysis
*Subcellular localization
*Real-time quantitative PCR
*mRNA in situ hybridization

==References==
<references>
<ref name="ref1">Yuanlin Duan1, Shengping Li1, Zhiwei Chen1. (2012)Dwarf and deformed flower 1, encoding an F-box protein,is critical for vegetative and floral development in rice(Oryza sativa L.). The Plant Journal， 72： 829–842</ref>
<ref name="ref2">李生平1, 段远霖1,2, 陈志伟. (2011) 水稻生长发育多效基因DDF1 的遗传分析与基因定位. 33(12): 1374―1379.</ref>
<ref name="ref3">Ambrose, B.A., Lerner, D.R., Ciceri, P., Padilla, C.M., Yanofsky, M.F. andSchmidt, R.J. (2000) Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots. Mol. Cell, 5： 569–579.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0139000

2014-05-13T04:01:01Z

Lilly3850: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:pair3_dffi.jpg|right|thumb|275px|'''Figure 1.''' '' Comparison of morphological characters between ddf1-1 and wild-type plants .(from reference)<ref name="ref2" />).'']]
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 2.''' '' Histological characterization of the leaf, root and stem of ddf1-1 plants .(from reference)<ref name="ref2" />).'']]
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1. <ref name="ref1" />The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.<ref name="ref3" />The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes<ref name="ref2" />.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===

The mutant ddf1-1 was discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1)<ref name="ref2" /><ref name="ref1" />. All vegetative organs in ddf1-1, including stems<ref name="ref1" />, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller,<ref name="ref1" /> consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet<ref name="ref1" />, the numbers of various vegetative organs<ref name="ref1" /><ref name="ref2" /> (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===

You can also add sub-section(s) at will.
Studies have indicated that F-box genes play crucial roles in a number of biological processes in plants,including flower development, self-incompatibility, hormone，response, circadian clock and photomorphogenesis,senescence, defense response, embryogenesis and seedling development (Moon et al., 2004; Lechner et al., 2006;Jain et al., 2007; Schumann et al., 2011). Until now, however,our knowledge about the functions of F-box genes in plants has remained very limited. Fewer than 5% inArabidopsis F-box proteins (Schumann et al., 2011) and only a few proteins in Oryza sativa (rice; Gomi et al., 2004; ª 2012 The Authors 829The Plant Journal ª 2012 Blackwell Publishing LtdThe Plant Journal (2012) 72, 829–842 doi: 10.1111/j.1365-313X.2012.05126.xIkeda et al., 2007; Jain et al., 2007) have been characterizedfor their functions.The model is also applicable to rice, with modifications,although monocot flowers are quite different from eudicot in morphology(Ambrose et al., 2000; Lee et al., 2003; Nagasawa et al., 2003; Whipple et al., 2004; Kater et al., 2006; Yamaguchi et al., 2006; Dreni et al., 2007; Ikeda
et al., 2007). In rice, the functions of B-class genes OsMADS4 and OsMADS16 were proven to be largely conserved (Nagasawa et al., 2003), whereas the functions of C-class genes OsMADS3 and OsMADS58 were shown to have diverged from the Arabidopsis AGAMOUS gene, and the carpel specification appeared to be mainly determined by a
distinct non-MADS-box homeotic gene DROOPINGLEAF (DL; Yamaguchi et al., 2004, 2006). Nevertheless, a recent study on the Osmads3 Osmads58 double mutant suggestedthat the two genes together exhibit a complete C-function in rice (Dreni et al., 2011).
===Labs working on this gene===

*Plant materials
*Microscopic observation
*Scanning electron microscopy observation
*Positional cloning of DDF1
*Promoter activity analysis
*Subcellular localization
*Real-time quantitative PCR
*mRNA in situ hybridization

==References==
<references>
<ref name="ref1">Yuanlin Duan1, Shengping Li1, Zhiwei Chen1. (2012)Dwarf and deformed flower 1, encoding an F-box protein,is critical for vegetative and floral development in rice(Oryza sativa L.). The Plant Journal， 72： 829–842</ref>
<ref name="ref2">李生平1, 段远霖1,2, 陈志伟. (2011) 水稻生长发育多效基因DDF1 的遗传分析与基因定位. 33(12): 1374―1379.</ref>
<ref name="ref3">Ambrose, B.A., Lerner, D.R., Ciceri, P., Padilla, C.M., Yanofsky, M.F. andSchmidt, R.J. (2000) Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots. Mol. Cell, 5： 569–579.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0139000

2014-05-13T03:59:07Z

Lilly3850: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 1.''' '' Comparison of morphological characters between ddf1-1 and wild-type plants .(from reference)<ref name="ref2" />).'']]
[[File:pair3_tupian2.jpg|right|thumb|275px|'''Figure 2.''' '' Histological characterization of the
leaf, root and stem of ddf1-1 plants .(from reference)<ref name="ref2" />).'']]
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1. <ref name="ref1" />The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.<ref name="ref3" />The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes<ref name="ref2" />.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===

The mutant ddf1-1 was discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1)<ref name="ref2" /><ref name="ref1" />. All vegetative organs in ddf1-1, including stems<ref name="ref1" />, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller,<ref name="ref1" /> consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet<ref name="ref1" />, the numbers of various vegetative organs<ref name="ref1" /><ref name="ref2" /> (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===

You can also add sub-section(s) at will.
Studies have indicated that F-box genes play crucial roles in a number of biological processes in plants,including flower development, self-incompatibility, hormone，response, circadian clock and photomorphogenesis,senescence, defense response, embryogenesis and seedling development (Moon et al., 2004; Lechner et al., 2006;Jain et al., 2007; Schumann et al., 2011). Until now, however,our knowledge about the functions of F-box genes in plants has remained very limited. Fewer than 5% inArabidopsis F-box proteins (Schumann et al., 2011) and only a few proteins in Oryza sativa (rice; Gomi et al., 2004; ª 2012 The Authors 829The Plant Journal ª 2012 Blackwell Publishing LtdThe Plant Journal (2012) 72, 829–842 doi: 10.1111/j.1365-313X.2012.05126.xIkeda et al., 2007; Jain et al., 2007) have been characterizedfor their functions.The model is also applicable to rice, with modifications,although monocot flowers are quite different from eudicot in morphology(Ambrose et al., 2000; Lee et al., 2003; Nagasawa et al., 2003; Whipple et al., 2004; Kater et al., 2006; Yamaguchi et al., 2006; Dreni et al., 2007; Ikeda
et al., 2007). In rice, the functions of B-class genes OsMADS4 and OsMADS16 were proven to be largely conserved (Nagasawa et al., 2003), whereas the functions of C-class genes OsMADS3 and OsMADS58 were shown to have diverged from the Arabidopsis AGAMOUS gene, and the carpel specification appeared to be mainly determined by a
distinct non-MADS-box homeotic gene DROOPINGLEAF (DL; Yamaguchi et al., 2004, 2006). Nevertheless, a recent study on the Osmads3 Osmads58 double mutant suggestedthat the two genes together exhibit a complete C-function in rice (Dreni et al., 2011).
===Labs working on this gene===

*Plant materials
*Microscopic observation
*Scanning electron microscopy observation
*Positional cloning of DDF1
*Promoter activity analysis
*Subcellular localization
*Real-time quantitative PCR
*mRNA in situ hybridization

==References==
<references>
<ref name="ref1">Yuanlin Duan1, Shengping Li1, Zhiwei Chen1. (2012)Dwarf and deformed flower 1, encoding an F-box protein,is critical for vegetative and floral development in rice(Oryza sativa L.). The Plant Journal， 72： 829–842</ref>
<ref name="ref2">李生平1, 段远霖1,2, 陈志伟. (2011) 水稻生长发育多效基因DDF1 的遗传分析与基因定位. 33(12): 1374―1379.</ref>
<ref name="ref3">Ambrose, B.A., Lerner, D.R., Ciceri, P., Padilla, C.M., Yanofsky, M.F. andSchmidt, R.J. (2000) Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots. Mol. Cell, 5： 569–579.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

2014-05-12T14:27:53Z

Lilly3850: /* Expression */ ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
controlling monocot vegetative and reproductive development ddf1-1 exhibits significant size reduction in the whole plant, except the spikelet.Cell division and cell expansion are inhibited in ddf1-1.The expression of cell division/expansion-related genes is downregulated in ddf1-1.ddf1-1 also shows significant structural abnormalities in florets.The ddf1-1 phenotype is caused by a single nucleotide substitution.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.DDF1 encodes an LRR-type F-box protein, anchored in nucleolus.The expression pattern of DDF1 is consistent with the phenotypes of ddf1-1.DDF1 regulates the expression of several floral organ specification genes.

===Expression===
Please input expression information here.
The mutant ddf1-1 was discovered from a breeding population.The ddf1-1 plant is much shorter and thinner than the wild type, and this difference is distinct at the early seedling stage and becomes more apparent as the plants develop. The final plant height of the mutant reaches only about half of that of the wild type (Figure 1a–e and Figure S1). All vegetative organs in ddf1-1, including stems, internodes, leaves and roots (both fibrous and lateral), are significantly shorter and thinner than in the wild type (Figure 1f–j and Figures S2 and S3). In addition, the ddf1-1 panicle is also notably shorter and smaller, consisting of fewer primary and secondary branches and spikelets (Figure 1e,f; Figure S4). These phenotypes suggest that plant growth in ddf1-1 is seriously stunted. However, the size of the spikelet, the numbers of various vegetative organs (e.g. internodes and tillers; Figure S5) and the time from sowing to heading (Figure 1e) remain unaffected in ddf1-1.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
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==References==
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==Structured Information==
{{JaponicaGene|
GeneName = Os06g0139000|
Description = Conserved hypothetical protein|
Version = NM_001063278.1 GI:115466287 GeneID:4340059|
Length = 5003 bp|
Definition = Oryza sativa Japonica Group Os06g0139000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:2056222..2061224|
CDS = 2056559..2056939,2057034..2057180,2057282..2058094|
GCID = <gbrowseImage1>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:2056222..2061224
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttag</cdnaseq>|
AA = <aaseq>MPMRDAARAACVSHSFLSSWRCHPNLNFSSEALGLSKNAYGNEE LAGLFYSKVNHILKRHSGIGVKKLTIKVYSDYSGKGSSYLNNWLQIAVKPGIEELIIA LTQFQAKYNFPCSLLSNGSGDSIQYLHLSNCSFHPTVTLSGLRSLTRLYLCRVRITEN ELGCLLSHSLALEQLEIRYCNRIVCLKVPCLLQRLISLKVFGCDKLKLIENEAPNVSM FAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAP KLCSKFLCLRHLSIGLIGFFPAYDYLSLASYIYAAPSLETFDLNVMQRNVQSVSIFAH PADLRSIREEKHHNLKSVTVTSFISVKSLVELTCHILESTASLECLTLDASQTGFRCD TPGSKISKCPPLDRDIIMEGHRGVLAIRRYIQPRVPSTVKLTVLEPCSCHSTEL</aaseq>|
DNA = <dnaseqindica>4286..4666#4045..4191#3131..3943#gggctccttcctaaaattataactctgatatctatatctatcttgcctacaaattataactctcgttccccaattttgtgtgtgacgttgagaagtgccgaccggcgacgacgaaaggccggcggagagagatcccctcaccaccatggggatgctggatctgatgcgcctcatgtccatccagcgccagcgggaccaggagcgccgccgccgccaagcccaagctcccccccgtggtaaagaaactactcctcataagcttcctctcccacctccctctgtcactctctggtcaagcggcggcagcagcagcagcttcttgcgtttacggtgggggaagggaaccagatggacttgcttgcgcctctttttcctgtttcgttgggtgggtgtttatttagttttcttcacactagtttgtgtcgattattcgaatctgtatatatgtagtactagtatatacacaaaccaaaaagaaaaaaaaacatgtttttattgagcgcaaggtaggagatcaaaggtggtttatccgatccgccatggctggtggccggccaccaccgtcttgttccttttctctttaactagattgacgagacgtagggagagagactacactgtaactataaggtacccgcgtgttgctgcgggaattcttagaacaatatttgtgcgtatggtcgcatggatagcaaaaacactgaattgcattgaagtaagacaacctctttttgtgtgaatatggagttacggttttgttcaacattcaaatcagttgtgaaatatgaggatatatatcttggtagctgacaatttagatattaccgtgggcaacagaaaaagaaaaatgtttagtaatactgtgagaacttggctaatgatgataattcaaaatcatatacattgctccccaagttggataacagggttagcaaaaaaaaattcatattcagatatgaaagaaggttcagcagataaacatggctattaaaattcagttaccgaacaaggttcaccaactaaaaatttccatcaaaattaagagttttacgcacctcaatattatacttagactacgaatcaaccaactgatggtcttgtttcctgcattcttcaattgcttaaaaagaagaaaaggatctgacaatgaaaccacagctacatagggcatcgacagaaagtggttaaagttgtaactgcatatctacatagcagcatacgatagacacataattgaaaggtccagattagcatagcttcaagcatcataaaacatgaagctagtcatgggtggaaagattctgtggaaggacagggataataagcatattgatttgaacctgcgggagtggcatatcctgagagagataagttgtgttgggaaggctcatcagctagtgtcgttgaccagagtgagtttgtcatcgtcgccggaggatacagctcgtctttctctctcccatgaagatctggcagcatagctgagagcctttgagaggaaaggagaaggcatattgagggtaataaatgtccatggcggctgtcacttcaactcctagctgtttcaggttttgatagcgcgtttcagcctttcaggcgagggagactcaaaggtggacatagaagccgaatggctcagttctcttgcgtcgtgttgcgctgagagtggagatggaacgataggaggtaggatgttctggggtacgtaggaacgtttggttgggttttctgtgtgagagacactacattcaatctgatggaaattaaggggtgatgtggcaaagcgagatgaccaaaaaaatactattaattgcactaagtggggatgaattgtatcggtttataggatactatactatgcaaaataagaaaaatactatatgacatgctgaacttcagacatttccccttaaattgataacactttgatttcttttacaaactgttagtgttgttgtacaaaaggggacaaaaaaaaaaataacggattgccatgtgtgcaatggtgtgcttgcttgaattttctgtttattcctgaaatggatgtaaaccatgcatcttgtgctgcagatggattgattgctttacgggctaaaagaaaagggctcaccctgccaacaagacggcgattctcagggtgctgctgacatagagataccaagccttccagaggtacaccataaataaaatgttgatgatgaaacatcttactagtagtgtagtacaagtaaattatgacgattactgcttgaatcgcacaaatcggtcgaccaacgttattaaagtttatgaacggagcactttgatgctataacctcctacagctgctgcattggaactgtttttccagctgttgcacttactttcaattacaagttgtgtccacataatgcttgcttctaagctggtggttcttaggctgggagtttctcaagtcaacgtcaatgattagcctttgccactagtctccatactgtttctaacttccttaaattttaacatctcaaaaatggttccttgctaacaaatgtgacatgttatctccggtaggccattgcaggcagtacatggtaattttgtgagccacatgtccttgtaggatggcattcttgtttgattccccgcatctccccatcctgactccccgcatcttccccatcctgagttcctgacctagtgtatgaaaatccaagcaagcaaccaaacacacctttagttctgttacatatttaactgatctttctggttgtttatatattcagatattggtaccctatgcaaagtgcatgtccatttctgttccttttatgccattgaataacatgctattagacaattaaacatcattccatccattttatctggcacaattgcaaagaaacaaatagtgccgagcacctaatacatgatttgggtaagaccatatttgcctagcagaagtcaactatacaattcatagtacaatagtacataatcaggcaggtagcactggaccggttaaagtgttaactccataagttaccattttttttcttccatctaattcaaccatctgtcttcacaattccaatggttaacttctctcccatgcttgtgcaagcaggacatctggcgtcttatacattccttgatgccaatgcgggatgctgcccgagctgcctgtgtgtctcattcctttctaagttcctggagatgccaccccaacctcaatttcagtagtgaagcattggggttgagcaaaaatgcatatggaaacgaagaattggctggacttttctacagcaaagtcaaccacattctcaaaaggcactcaggcatcggcgtgaaaaaactgacgattaaggtatattcagattatagtgggaagggctcttcatatctcaacaattggcttcagattgctgttaaaccagggattgaagaactcataattgcactgacccagttccaggcaaagtacaatttcccatgctctcttctgtcgaatgggagtggagactcaatccaatatcttcacctttctaactgttccttccacccaacagtcacacttagtggcttaagaagtctgacgagattgtatctttgtcgtgtgcgtattaccgagaacgagttaggctgccttctttcccattctcttgcattggagcagttggaaatcaggtactgcaataggatagtttgcctgaaggtaccttgcctactgcaacggctcatctccctgaaggtgtttgggtgtgacaagttgaaactgatagaaaatgaagctcctaatgtctccatgtttgcatttcaaggggacaaaacggaactgaaacttggagaaactttgcaaataaagagcctatgcatggtccgctctggttatgtttatcatgctcgtgctgaacttccatccatcatgccaaatcttgaatctcttgccctaaagtcatgcaaagaggtatgagaaattttacctgacacactaatgataggcatatctaatgagactagattctgtcttatgggttgtagcataattaatttgacctctttatgcagacggcctttgcaccgaagctgtgtagcaaattcctctgcctcaggcacttgagcattggccttattggatttttcccagcctatgactatttatccctggcttcttatatttatgctgcaccttctctggagacttttgacttgaatgtgagtagctgttcatatattattactgctatgaatgaaattagtagctgtgtggtggaaatgtcacttaaaatttctccctttcacatcctaggtaatgcagcggaacgtgcagagtgtttcaatttttgcacatcctgcagatctgagatcaatacgagaagagaagcatcacaaccttaagagtgtgacggttacatcattcatctctgtaaagagcttggttgagctgacatgccatatccttgagagtacagcttcactcgagtgcttgacattggatgcttctcagactggttttaggtgtgatactccaggcagcaaaatcagcaaatgccccccactagatagggacattatcatggaaggtcacagaggggtcttggctatcagaagatacatccagcctagggtaccttccacagtgaagctgactgttttggagccctgcagctgccattccactgaactttagatgtcatgtttatcttagttattcgatgtttaatcgtgctgctgctgatgatgattctgtagattcttagatgggtcatggtttctaaagtttgctcttaatgattactactagttgatatcataaccaatgcacatgatatccactagtaactctagtttccacctagcagcagtgttgtatgcacattaaaaagttcttactagcagaagttctcgaacgtttgatttacctacttgtggccttgtgggttataaaaagctaaacattagagtttgtaacaaattttagtgtgtagcctttaatttcttttcacctatatatgcatcggtttctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063278.1 RefSeq:Os06g0139000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0139000

2014-05-12T14:24:14Z

Lilly3850: /* Function */ DDF1 is generally required for normal organ size in rice.DDF1 is also required for normal flower development in rice