RiceWiki - User contributions [en]

File:Clpp5.jpg

2015-03-20T13:42:06Z

Littlescrew:

File:Clpp.jpg

2015-03-20T13:38:09Z

Littlescrew:

Os03g0308100

2015-03-20T13:34:32Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3(Figure 1)[[File:clpp.jpg|right|thumb|430px|'''Figure 1.''' ''Characterization of the pale-yellow-leaf–variegated (pyl-v) allele. <ref name="ref1" />.'']]. A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 [[File:clpp5.jpg|right|thumb|430px|'''Figure 1.''' ''Phenotypes of pale-yellow-leaf variegated (pyl-v) (a), pyl-stable (pyl-stb) (b), pyl-stb treated with 5-azacytidine (5-azaC) (c).<ref name="ref2" />. '']].
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* National Institute for Basic Biology, Okazaki, Japan
* Research Institute for Bioresources, Okayama University, Okayama, Japan
* Faculty of Agriculture, Hokkaido University, Sapporo, Japan

==References==
<references>
* <ref name="ref1">
Adam, Z. and Clarke, A.K. (2002) Cutting edge of chloroplast proteolysis.Trends Plant Sci. 7, 451–456.
</ref>

* <ref name="ref2">
Kazuo Tsugane, Masahiko Maekawa, Kyoko Takagi, et al. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. The Plant Journal (2006) 45, 46–57.
</ref>

</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0308100|
Description = Peptidase S14, ClpP family protein|
Version = NM_001056437.2 GI:297600815 GeneID:4332615|
Length = 2967 bp|
Definition = Oryza sativa Japonica Group Os03g0308100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:11017466..11020432|
CDS = 11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 ,11019648..11019740,11019822..11019945,11020065..11020154,11020238..11020338 |
GCID = <gbrowseImage1>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq>|
AA = <aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq>|
DNA = <dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056437.2 RefSeq:Os03g0308100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0308100

2015-03-20T13:22:23Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 <ref name="ref2" />.
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* National Institute for Basic Biology, Okazaki, Japan
* Research Institute for Bioresources, Okayama University, Okayama, Japan
* Faculty of Agriculture, Hokkaido University, Sapporo, Japan

==References==
<references>
* <ref name="ref1">
Adam, Z. and Clarke, A.K. (2002) Cutting edge of chloroplast proteolysis.Trends Plant Sci. 7, 451–456.
</ref>

* <ref name="ref2">
Kazuo Tsugane, Masahiko Maekawa, Kyoko Takagi, et al. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. The Plant Journal (2006) 45, 46–57.
</ref>

</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0308100|
Description = Peptidase S14, ClpP family protein|
Version = NM_001056437.2 GI:297600815 GeneID:4332615|
Length = 2967 bp|
Definition = Oryza sativa Japonica Group Os03g0308100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:11017466..11020432|
CDS = 11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 ,11019648..11019740,11019822..11019945,11020065..11020154,11020238..11020338 |
GCID = <gbrowseImage1>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq>|
AA = <aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq>|
DNA = <dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056437.2 RefSeq:Os03g0308100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0308100

2015-03-20T13:20:03Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 <ref name="ref2" />.
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
* <ref name="ref1">
Adam, Z. and Clarke, A.K. (2002) Cutting edge of chloroplast proteolysis.Trends Plant Sci. 7, 451–456.
</ref>

* <ref name="ref2">
Kazuo Tsugane, Masahiko Maekawa, Kyoko Takagi, et al. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. The Plant Journal (2006) 45, 46–57.
</ref>

</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0308100|
Description = Peptidase S14, ClpP family protein|
Version = NM_001056437.2 GI:297600815 GeneID:4332615|
Length = 2967 bp|
Definition = Oryza sativa Japonica Group Os03g0308100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:11017466..11020432|
CDS = 11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 ,11019648..11019740,11019822..11019945,11020065..11020154,11020238..11020338 |
GCID = <gbrowseImage1>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq>|
AA = <aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq>|
DNA = <dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056437.2 RefSeq:Os03g0308100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0308100

2015-03-20T13:11:38Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65.
Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 <ref name="ref2" />.
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0308100|
Description = Peptidase S14, ClpP family protein|
Version = NM_001056437.2 GI:297600815 GeneID:4332615|
Length = 2967 bp|
Definition = Oryza sativa Japonica Group Os03g0308100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:11017466..11020432|
CDS = 11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 ,11019648..11019740,11019822..11019945,11020065..11020154,11020238..11020338 |
GCID = <gbrowseImage1>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:11017466..11020432
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq>|
AA = <aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq>|
DNA = <dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056437.2 RefSeq:Os03g0308100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os02g0816600

2014-06-28T04:10:35Z

Littlescrew:

''OsABC1-4'' is located in chromosome 2 and possesses 20 extrons, and this gene encodes a protein with 692 amino acids.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.
===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>
==Structured Information==
{{JaponicaGene|
GeneName = Os02g0816600|
Description = Conserved hypothetical protein|
Version = NM_001055049.1 GI:115449632 GeneID:4331141|
Length = 1636 bp|
Definition = Oryza sativa Japonica Group Os02g0816600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:35891775..35893410|
CDS = 35892102..35892236,35892370..35892585,35892717..35893043,35893213..35893410|
GCID = <gbrowseImage1>
name=NC_008395:35891775..35893410
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:35891775..35893410
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>cttgaaggaggtggcgcaaagaatataaactttcaagagttagcagcagatctagcacagataacatttgattacccattcaggatacctccgtactttgctttgattatcagagccattggagtattggagggtatagctttggtgggtgaccctgaatttgccattgtggatgaagcatacccatatattgcgcagagactactaacagatgagtcacctcgtctaaggagcgccttgcgatacacaatatatggcaaaacaggtgtattcgacgcagaaagattcattgatgtcatgcaagctttcgagaattttattcgtgcagcaaagagtggtggtggggagaacttgaaaggcagcatggctgagctggctgagataggaactctaccaagcacaagtttagttcctgcatttccaatggccatatcacagcctgagcaaccagtcaaagctcgggctgctctttcttttctactctctgagaggggcgacttttttagggagttcattcttgatgagattgtcaaagccatagatgcagtttcaagggagcaactgatacaaattgctgcatcttttgggctaggaaatgctaccccagttttcagcatggttcctgtcagagctagagcactgcttcctacaatcacagaggaagacagggtcatcttgaacaatgttgagaaggttgtgaagtttttgacagctgggaacaatccaacaacaattgatggggatgtaaatgttgtgtatcttgtacaagagcttctacctgtgttgccgagcatttcgtcgaagatcctaccagaggtcatgagccggttgtcatcgcgagtatttgcacggttgatccgggaggcatttttgtga</cdnaseq>|
AA = <aaseq>LEGGGAKNINFQELAADLAQITFDYPFRIPPYFALIIRAIGVLE GIALVGDPEFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKTGVFDAERFIDVMQA FENFIRAAKSGGGENLKGSMAELAEIGTLPSTSLVPAFPMAISQPEQPVKARAALSFL LSERGDFFREFILDEIVKAIDAVSREQLIQIAASFGLGNATPVFSMVPVRARALLPTI TEEDRVILNNVEKVVKFLTAGNNPTTIDGDVNVVYLVQELLPVLPSISSKILPEVMSR LSSRVFARLIREAFL</aaseq>|
DNA = <dnaseqindica>1175..1309#826..1041#368..694#1..198#cttgaaggaggtggcgcaaagaatataaactttcaagagttagcagcagatctagcacagataacatttgattacccattcaggatacctccgtactttgctttgattatcagagccattggagtattggagggtatagctttggtgggtgaccctgaatttgccattgtggatgaagcatacccatatattgcgcaggttagaatttgattcaactccatgctgcatttcttagaataacacaactacaaaggcaagcagatatatactaggatttgcatattccttctttctttggtctgttgggatcgaaggttgattttgatgttattgtattattgattctgatttttttcgacgatcgcagagactactaacagatgagtcacctcgtctaaggagcgccttgcgatacacaatatatggcaaaacaggtgtattcgacgcagaaagattcattgatgtcatgcaagctttcgagaattttattcgtgcagcaaagagtggtggtggggagaacttgaaaggcagcatggctgagctggctgagataggaactctaccaagcacaagtttagttcctgcatttccaatggccatatcacagcctgagcaaccagtcaaagctcgggctgctctttcttttctactctctgagaggggcgacttttttagggagttcattcttgatgaggtgagctctcatgttgcagcatttttgtattttgtttaaaccaaacaacagtaatttgcatgttgcagggaatgttgtttaagataatccagtgccttccatattgagacctcttgttctctgcattgcagattgtcaaagccatagatgcagtttcaagggagcaactgatacaaattgctgcatcttttgggctaggaaatgctaccccagttttcagcatggttcctgtcagagctagagcactgcttcctacaatcacagaggaagacagggtcatcttgaacaatgttgagaaggttgtgaagtttttgacagctgggaacaatccaacaacaattgatggggtatgtatactgaatgaaacactccgcaaatcgaacatctaaagattactgatttttttgtcttactgaatgaaacactccacaaatcgaacatctaaagattactgattttttgtctttgggttgatgccaggatgtaaatgttgtgtatcttgtacaagagcttctacctgtgttgccgagcatttcgtcgaagatcctaccagaggtcatgagccggttgtcatcgcgagtatttgcacggttgatccgggaggcatttttgtgaagtgatttttcttacttccgacgggagattgcaaacagttatttctcccttttttgcaaacaatacatcacaaatgatgatagaactcatagaagattgtacagctaaacgttgtatagaaattatacacatatacgcagatttaaccaatttttaactagcaattttccagtgttaatggagactacagagcctgcagtttcattgtgcgtacatggatcaagttgctaatttaaccctttttttgttagcgttttcgtcagaacggagtatcacttgtatatgcaaattaaccaatgtttatatagcaattctatgactttgctg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055049.1 RefSeq:Os02g0816600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

Os04g0640500

2014-06-28T04:07:17Z

Littlescrew:

''OsABC1-5''encodes a 711-amino-acid-protein with its 4 extrons located in chromosome 4.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os04g0640500|
Description = ABC-1 domain containing protein|
Version = NM_001060571.1 GI:115460871 GeneID:4337164|
Length = 7230 bp|
Definition = Oryza sativa Japonica Group Os04g0640500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:32972942..32980171|
CDS = 32973070..32973462,32973582..32973626,32973721..32973759,32974011..32974181,32974671..32974823 ,32974991..32975026,32975834..32975877,32976219..32976309,32976396..32976437 ,32976533..32976641,32976790..32976904,32976983..32977032,32977206..32977284 ,32977392..32977442,32977595..32977736,32977944..32977988,32978263..32978370 ,32978472..32978513,32979017..32979199,32979561..32979680,32979810..32979914 |
GCID = <gbrowseImage1>
name=NC_008397:32972942..32980171
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:32972942..32980171
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgcttctgctccatccgcgtccgctccccgctccagctccggcgaggcgattcgagcccgccgtccgggtcccaccgcctcgccgtcgtcgtcgtcgtcggcggcctcctcttcctccgctcgcctccgcctccgcctccgccgcgatctacagcgttggtagctccgacgaggacgcgttcaccaggtgctccgggtacctcttcgaggagggcgcggcgaccgagggggagctccccacggcttacgatctcgccggcatcggcgccgtctaccgccgcaggccgctcctcgtggtccggcgggcactgcagattggcacctccttcggccgatggtttacgctgcgatacctcgaccgcgtcaacgagcgctccgacgacatgttcgagatcagggctgctcaactcaggcgaatactattggaacttggcccgacatttgtgaagattgcacaggcagtttcatcgcgaccggatgtgattccacctgcgtaccttgacgaactttcactacttcaagaccgtatagcaccattttcaactgaggttgcttttaacattatagaaacagagcttgggttgccactggacatgattttctcagagatatcaccagagcctgttgctgctgcatctcttgggcaggtttatcaggccaggcttcgttccaacaggaaggttgttgctgtcaaagtacaaagacctggagttcaagcagcaatttccttggatatctacatcttgagattccttgctggtgtcgctaggaaggctggcaagctgaacacagatcttcaggctgtactagatgaatgggcatcaagtttatttagggagatggattacagagcagaagcaagaagtgggcttaaattcagggaattatatgggaaatttagagatgtactagttccagaaatgtatctggaacaaacaagaagacgagtccttatcatggaatgggttgagggggaaaaactgtcagaagtcagagaccaatatttggttgaggtcggagtatactgctcactttctcagcttttggaatatggattttaccatgcagatccacatcctggaaatcttttgcgtacagttgatgggaagctagcgtatttagatttcggaatgatgggagaattccgacaagaacttcgtgatggatttattgaagcctgtcttcaccttgttaaccgtgattttgatggtttagcaaaagattttgttactctcggtttacttcctccaactgctcagaaagatgaagtgacaaaagcattgacaggtgtatttcaaaatgctgttgacagaggggtgcaaaatataagctttggagatctgtcagggaatcttggtcgaactatgtataaattcaagttccagataccttcttacttctctcttgtaattcgaagccttgctgtcttggaaggcattgcaatcagcttcaatcccaactacaaagtcttgggcagttcatacccatggattgcaagaaaagttctcacagacagctcaccaaagctccgatcaactttgcagacgcttctttataaggatggcactttccagattgaccgtttggagtctttgctaactgagtcgcttcgagcaagaacagagcagtccctgaccagggatcaacaagaggaaactgatagttccaaatttgcaattaaacaagtcttgtcatttactcttactgaacagggtgccttcgtgaaggatttacttcttcaggagattgctaagggattagatgcacttggagctgctacattgagttctgcaacatctgctgcagcctccagattgccgtttgctgttccatccccatcaccctcactagacaatgaggatgccactaacttgagaaatttacatcgccttctcctacttttgtccaaggtccctcagaaggaggattcatctccaattccaggatacaatagcactgaggagaacgaaggtgatagtacagatgagatttctcttgtgttatatgaaatgagatctctaccagagttgttgccagtactttctgtcattcctgagcttccaccagagtcccaacagcagtttctcctcctgccagcagatttaactaatcgtcttctgtctcgcgctgttgcaagaaccatcagaagaatattcatatga</cdnaseq>|
AA = <aaseq>MLLLHPRPLPAPAPARRFEPAVRVPPPRRRRRRRRPPLPPLASA SASAAIYSVGSSDEDAFTRCSGYLFEEGAATEGELPTAYDLAGIGAVYRRRPLLVVRR ALQIGTSFGRWFTLRYLDRVNERSDDMFEIRAAQLRRILLELGPTFVKIAQAVSSRPD VIPPAYLDELSLLQDRIAPFSTEVAFNIIETELGLPLDMIFSEISPEPVAAASLGQVY QARLRSNRKVVAVKVQRPGVQAAISLDIYILRFLAGVARKAGKLNTDLQAVLDEWASS LFREMDYRAEARSGLKFRELYGKFRDVLVPEMYLEQTRRRVLIMEWVEGEKLSEVRDQ YLVEVGVYCSLSQLLEYGFYHADPHPGNLLRTVDGKLAYLDFGMMGEFRQELRDGFIE ACLHLVNRDFDGLAKDFVTLGLLPPTAQKDEVTKALTGVFQNAVDRGVQNISFGDLSG NLGRTMYKFKFQIPSYFSLVIRSLAVLEGIAISFNPNYKVLGSSYPWIARKVLTDSSP KLRSTLQTLLYKDGTFQIDRLESLLTESLRARTEQSLTRDQQEETDSSKFAIKQVLSF TLTEQGAFVKDLLLQEIAKGLDALGAATLSSATSAAASRLPFAVPSPSPSLDNEDATN LRNLHRLLLLLSKVPQKEDSSPIPGYNSTEENEGDSTDEISLVLYEMRSLPELLPVLS VIPELPPESQQQFLLLPADLTNRLLSRAVARTIRRIFI</aaseq>|
DNA = <dnaseqindica>129..521#641..685#780..818#1070..1240#1730..1882#2050..2085#2893..2936#3278..3368#3455..3496#3592..3700#3849..3963#4042..4091#4265..4343#4451..4501#4654..4795#5003..5047#5322..5429#5531..5572#6076..6258#6620..6739#6869..6973#ctctttttggcgcctaatcggctaatcccctccagcttccacttctccccggttcatccgctctcaaactcttcaatcctcgattccccattcgaaatttcgagtccctgagatccccacgtttccagatgcttctgctccatccgcgtccgctccccgctccagctccggcgaggcgattcgagcccgccgtccgggtcccaccgcctcgccgtcgtcgtcgtcgtcggcggcctcctcttcctccgctcgcctccgcctccgcctccgccgcgatctacagcgttggtagctccgacgaggacgcgttcaccaggtgctccgggtacctcttcgaggagggcgcggcgaccgagggggagctccccacggcttacgatctcgccggcatcggcgccgtctaccgccgcaggccgctcctcgtggtccggcgggcactgcagattggcacctccttcggccgatggtttacgctgcgatacctcgaccgcgtcaacgagcgctccgacgacatgttcgaggtccgccatgctttacgtttgcttttgatctcgtgcacgcttgctgtttgattaaattcctacatttttggggggttgttcgtgagctgattttgcattggtcggtgctgatgctgcagatcagggctgctcaactcaggcgaatactattggaacttggcccggtatgcttccgtttgcctgtactgtgtacatatgggctcgttcgtgtaccgttatgatgattgatgggtatgtcattctgctctttgatggcagacatttgtgaagattgcacaggcagtttcatcgcgaccggtgagcctcagcagccaagtagtcgttgcattttcatcacttctattttagagctttagcttatgattttgatgaattgttatctggcaaatggttagtcatgcaccatttaacagtcacatttattggagcatgaatgtgctattctgcttgcataatatatcagttgctagtttagacaactcagtggctattctcttgctactaaatgattggtgggccatggacacctcctgtctcatttgttgcaggatgtgattccacctgcgtaccttgacgaactttcactacttcaagaccgtatagcaccattttcaactgaggttgcttttaacattatagaaacagagcttgggttgccactggacatgattttctcagagatatcaccagagcctgttgctgctgcatctcttgggcaggtatgtttgttttattttttttgtaatgtcttgaagattcgatctacctcttcagcaactttgtgattacctgtttgcactttgaactgtataaacagaccaaacttgtgtgcttgtctcctgtcagctgcacttagttaaattcaactgtacgattcatgtcaacttgttgatgtttgaactgtgcgcattaaaaccgatgcacggcacaatgtttatttacttttataaagtaatattcaaaactaatttcatttatttgaaagctagcacctggaagcatctaaacttaaactaaacaaattctggctgtaacatgctctgagttgttcgataggatggggatcccaaaactgcatactgtttcagccctgctaatcaaccatgttatgttgaacaattggtgaaatgacagtgatactctgtatagtgcattgtcagatattttcatctctggacgatataacatttcatattctactattgtaggtttatcaggccaggcttcgttccaacaggaaggttgttgctgtcaaagtacaaagacctggagttcaagcagcaatttccttggatatctacatcttgagattccttgctggtgtcgctaggaaggctggcaagctgaacacagatcttcaggtaatgctaaagtcctatagattcccaatgaaatcaaataaagtggtcattgcgcaacaggaagggaagttaccatttaataagaaatctcaactatcttattcatagagattctatttatatatacttaatttataactgtttgtatctgattacttcatatgcaggctgtactagatgaatgggcatcaagtttatttagggtaactttctacacatgctcaccctttaaatatttcacatcttttcatgtcatctgaagtaatcaatgtggctataggtatgaaaattaaacattaactagcacaatccgaaaggaatggtgttattaggctgtcataacaataagctgaaaaaaaaatggaggttagcatccaaatgactgtggatcagtggaagtcaagtgtactattcaattaaagttagaagattttttgagctaacattctattctagtagtaactctaagcctagttcactaggattttgtttttttttttgccgggtcggcggaagaatgccggccaaatttcattaagattgggagtaaaatacatgtatcccgacattaaactgtcgagtcaaggtaaaagccttgaaacaaagtgagaaaaagcaaaggggaaaactatttacagaagcagcaactaaaaggtctactcctcactaaactgaaaaataccggcagctctccagaccatcacatcttctttaatgtcttcactaggattttgtaattcgaagcctgcatatatacaaatggaacgacacatttacatgccaaagaagaacttgttggaaattcaggatcatcgtatgaatatgaatagtaaagttaaataattattgatgaattgtttttaaggaaacaagcattacctttcttgcaagtctgtcctatgacttgcaatattctatgtacacttagctagttagctacctgattttaaaaataaggttcatattcttagagctacacattgaatacaggtaaatcacatttaatgcaggagatggattacagagcagaagcaagaagtgggcttaaattcaggttacattcttcatttattagcaaaagtcaattgaattgctttgtctaatatgaacactgttactatccattatcttgaaacaattcaagttacaatttgtagaaacttcaactagtctgtagttcaatagacataaactttttattactttaacaagcccttgcaatttctgaaaagtatattgttctaacatggggccagttcacagaaacattaaatccgttgctccgccttgactatgcatgagtgctatcactaaaccaatatgcattgttcattttggctgaatcgaggataaatataacacggataccccttttgcacttcctttctgcaacagggaattatatgggaaatttagagatgtactagttccagaaatgtatctggaacaaacaagaagacgagtccttatcatggaatgggttgaggtgaaatctgcactctcattcactcgttagcaacttgaacagcgcataggcaaccctagttactggcttatactgtggtcttttagggggaaaaactgtcagaagtcagagaccaatatttggttgaggtaagaccagtgcatatataagtgattgaaatcttgtacctcactattagtaacaccgttgaccagatagatctgctgacattgttacctcacaggtcggagtatactgctcactttctcagcttttggaatatggattttaccatgcagatccacatcctggaaatcttttgcgtacagttgatgggaagctagcgtatttaggtaataattgtgttattctgtttctgcctttaatgtttctgattttttagtcttggtaatgagttagttcctaaatttactcatttgctaccctttacatgaatcttgttccattttaactatctgaaacattttgttctctatgtagatttcggaatgatgggagaattccgacaagaacttcgtgatggatttattgaagcctgtcttcaccttgttaaccgtgattttgatggtttagcaaaagattttgttactctcgggtaagaataagcactaacatccagttggcgctgggtatctgtgtatccccatatctgacctatctttaatttctgcagtttacttcctccaactgctcagaaagatgaagtgacaaaagcattgacaggtactccagatctagatggatgctagcatgctaagaaaagaaattactgaaccttaaagtcgctttaccctgctactgctatccttgttacgttaattttggatcattaatgatgatataataacatatgtccatttggcacaactcacaattccctgtttttaatatctcaggtgtatttcaaaatgctgttgacagaggggtgcaaaatataagctttggagatctgtcagggaatcttggtcgaactatgtactaatctagtttatgaaaccctattttacaaaaataaatggggtttatatcaaactgttgattctctataagactgctcttaactagagttaatcttgtttcaggtataaattcaagttccagataccttcttacttctctcttgtaattcgaaggtaataagttttccctagcgtaggtatcactctctaccagtaactatatttattaacggacaacaaacatgcaaattactactctagaggtctaaagatgatgctgccttgctgttttttacatttgaaaggtttttgatgttatttttcagccttgctgtcttggaaggcattgcaatcagcttcaatcccaactacaaagtcttgggcagttcatacccatggattgcaagaaaagttctcacagacagctcaccaaa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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060571.1 RefSeq:Os04g0640500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

Os04g0660200

2014-06-28T04:02:26Z

Littlescrew:

''OsABC1-6'' is located in chromosome 4 and contains 16 extrons, and this gene encodes a protein with 374 amino acids.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os04g0660200|
Description = ABC-1 domain containing protein|
Version = NM_001060677.1 GI:115461083 GeneID:4337281|
Length = 5725 bp|
Definition = Oryza sativa Japonica Group Os04g0660200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:34096414..34102138|
CDS = 34096864..34096983,34098114..34098269,34099252..34099521,34100200..34101532,34101622..34101632 |
GCID = <gbrowseImage1>
name=NC_008397:34096414..34102138
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:34096414..34102138
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgatgtcgaggtttatgcaaatagggaagagcagaaaactagttcatgatgtattggttaactcgaaacccaatagtttcactgcacataacattggatccaactttgcgttcggtttggcacatacaggcagggcctgtttgcacgggaaggttccgcatggaccgggcacgtcatccatgcttggaagagcaaaggagagtttataccggaatccagctgcaagaaacttttcagttctctcaacatgtagccagaatgcatttcatggtcaacttgcttggaagcaactcatgacaatcggttctcatgtaccaaaggcatctccgattttaagtagggttgcttgtgccattagcttggctgccactagatctaatttagttccttacctctttgctttcgttgctggggagataatgctagctcagaagaccagtgcagacggagagtacttaccaattcgtgatagtctttacacgcgtgctcaagatggtcgtatctatgtcacctccttgatattttcagcagtagagctggtcatcataatcttcagatcaatatatttggcattgttgttcactccaagtatactcatggccccatttgcagatactcttggcagtaagtacaggaaaacatggctccgtcttgtgcatcgtaccctggagaaagcaggtcctgcatttattaaatggggccaatgggctgctactcgccctgatttatttgaaagtgacctctgtgctgaattgtcaaaactacacacaaaagcacctgctcacagctttgcttataccaagaagactgttgagaaagcttttggtcgaaagctatctgatctttttgagaattttgaagaagagcctgttgcttctggaagtgttgctcaagtgcaccgagctggtttgagattccggtatcctggccagcatataaagcgtgtaacagttgctgtaaaagtaagacatcctggcgtaggagaatcaatacggagggatttcactatcattaatgcagtagctaaaatttctagatatattcctacattgaattggttgcggctggatgagagtgtgcaacagtttgctgtctttatgatgtctcaagttgaccttgcaagggaagctgctcatttgagccggtttatctacaacttccgaaggtggaaggatgtgtcttttccaaaacctctttacccacttgttcatcctgctgtattggttgaaacttatgagcaaggtgagagtgttgcacactatgtcgatgacctcgatggacatgatcgaattaaaagcgcccttgcacatattggcactcatgctctcctgaaaatgcttctggttgataactttgttcatgcggatatgcaccctggaaatattttggtccgtgttatacaaccaaggaattcaaataacacccttttgaagtctaggccacatgtagtattccttgatgtaggaatgactgctgaactttcaagtaatgatcgtgtgaatttactggaatttttcaaggctgttgcacgccgagatggtcgtacagctgcagaacgtacactgaggttatcaaaacagcaaaactgcccaaatccaaaagccttcattgaggaagttgaacggtcgttttccttttggggaacctctgaaggtgatgctgtccacccagctgagtgtatgcaccagttgcttgagcaagtacggcgccataaagtaaacattgatgggaacgtttgtactgttatggtcactacattagttcttgagggctggcagcgcaagttggatccagattacaatgttatgaaaacattacaaactttactttttaaggaagactgggccaagtctcttcagtacacaatcgaagggcttatggcaccttag</cdnaseq>|
AA = <aaseq>MMSRFMQIGKSRKLVHDVLVNSKPNSFTAHNIGSNFAFGLAHTG RACLHGKVPHGPGTSSMLGRAKESLYRNPAARNFSVLSTCSQNAFHGQLAWKQLMTIG SHVPKASPILSRVACAISLAATRSNLVPYLFAFVAGEIMLAQKTSADGEYLPIRDSLY TRAQDGRIYVTSLIFSAVELVIIIFRSIYLALLFTPSILMAPFADTLGSKYRKTWLRL VHRTLEKAGPAFIKWGQWAATRPDLFESDLCAELSKLHTKAPAHSFAYTKKTVEKAFG RKLSDLFENFEEEPVASGSVAQVHRAGLRFRYPGQHIKRVTVAVKVRHPGVGESIRRD FTIINAVAKISRYIPTLNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKD VSFPKPLYPLVHPAVLVETYEQGESVAHYVDDLDGHDRIKSALAHIGTHALLKMLLVD NFVHADMHPGNILVRVIQPRNSNNTLLKSRPHVVFLDVGMTAELSSNDRVNLLEFFKA VARRDGRTAAERTLRLSKQQNCPNPKAFIEEVERSFSFWGTSEGDAVHPAECMHQLLE QVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDYNVMKTLQTLLFKEDWAKSLQYTIE GLMAP</aaseq>|
DNA = <dnaseqindica>5156..5275#3870..4025#2618..2887#607..1939#507..517#aggctgccgcccgtccgtccgcccccgcgcaccacgcggcgtctcgtcctcctctcatcggaccaccaaatttgcagctcgcctccacctccacctccacctccacctcctccgcctccgcctccgcctccaaaccctagcgcctcgccgcccaccgacccccgcgcttctcctccatccatgcgcccccgtctcgtcgccgccgccgccgccgccgatcatggctgcctctagggtttcccgggcccagccatggtgatctcatccccgccaacgaaccnctcttctgcatcggtaagtccccgttggccccccacccccgcccacctctcgctcgcttctatgacctcgaggggattcgatctcctcgcccctcgctcgcggatgcgcggagcccaatcgcgttgctaaatccgaacctctaatgtgagtgtctctccagctttgtacgattcgcccgagcctggatcccgccttcattgacgcgcccgctgtccgggaacaccatgatgtcgaggtcagctccgcagctcaaaatctactgagcttattggtgcttaatttggtgcaatgtagaagtgtaaatggttttcctgttgcttccaggtttatgcaaatagggaagagcagaaaactagttcatgatgtattggttaactcgaaacccaatagtttcactgcacataacattggatccaactttgcgttcggtttggcacatacaggcagggcctgtttgcacgggaaggttccgcatggaccgggcacgtcatccatgcttggaagagcaaaggagagtttataccggaatccagctgcaagaaacttttcagttctctcaacatgtagccagaatgcatttcatggtcaacttgcttggaagcaactcatgacaatcggttctcatgtaccaaaggcatctccgattttaagtagggttgcttgtgccattagcttggctgccactagatctaatttagttccttacctctttgctttcgttgctggggagataatgctagctcagaagaccagtgcagacggagagtacttaccaattcgtgatagtctttacacgcgtgctcaagatggtcgtatctatgtcacctccttgatattttcagcagtagagctggtcatcataatcttcagatcaatatatttggcattgttgttcactccaagtatactcatggccccatttgcagatactcttggcagtaagtacaggaaaacatggctccgtcttgtgcatcgtaccctggagaaagcaggtcctgcatttattaaatggggccaatgggctgctactcgccctgatttatttgaaagtgacctctgtgctgaattgtcaaaactacacacaaaagcacctgctcacagctttgcttataccaagaagactgttgagaaagcttttggtcgaaagctatctgatctttttgagaattttgaagaagagcctgttgcttctggaagtgttgctcaagtgcaccgagctggtttgagattccggtatcctggccagcatataaagcgtgtaacagttgctgtaaaagtaagacatcctggcgtaggagaatcaatacggagggatttcactatcattaatgcagtagctaaaatttctagatatattcctacattgaattggttgcggctggatgagagtgtgcaacagtttgctgtctttatgatgtctcaagttgaccttgcaagggaagctgctcatttgagccggtttatctacaacttccgaaggtggaaggatgtgtcttttccaaaacctctttacccacttgttcatcctgctgtattggttgaaacttatgagcaaggtgagagtgttgcacactatgtcgatgacctcgatggacatgatcgaattaaaagcgcccttgcacatattggcactcatgctctcctgaaaatgcttctggtaatgctttcagccatctcttagaattgtcattattgttttgcgtttggagatgagagcatgtatttcatttgagtgaaacaatgaaatgttatagcatacccttttgatgaatgatgactcttgtgtcttatggtctatttctgggttactgtttatgctgtgagcccgtgagttcaattgagcattgttgcatttaacctctaaattgaactgcctgtttataaaagttcagtgcttgtttagaaacatctctggttcatattgatataggttagcaaagacattcagcacaactgtcacttcacttctctagacaaaactaatccaaatatatctttacacaagtttgaaaccaaggatttgaaaatatgcaaaatgtgacatattttggaaagataaagggtttcaatattttgttttatgcatataatatcactttagctccttcgttcttagtttcttacagaactattgtgtatgcaattcaacacaatattaaaagatcattatttttattattattttggtccaaattgatgaacctcactggaccttgaccatctctctttagtacattctatttgctagttacacataggcacttaacattttagggcttttaattatggttagttttcaccacgttgcagcattgttaacatccaccttttgcaggttgataactttgttcatgcggatatgcaccctggaaatattttggtccgtgttatacaaccaaggaattcaaataacacccttttgaagtctaggccacatgtagtattccttgatgtaggaatgactgctgaactttcaagtaatgatcgtgtgaatttactggaatttttcaaggctgttgcacgccgagatggtcgtacagctgcagaacgtacactgaggttatcaaaacagcaaaactgcccaaatccaaaagccttcattgaggtaattattatttcttgtcactggtctgtttcttggcagtaacacctctgcttttccttgttgaggtcctcggtgcaccctttagtcaagataattatattgctgctataataggtggtatatgcatctttaagatatgaattgatggcaagatgtatttgggcactgtaccttgctggaaagcacctgggatgtttaaattttgagtaaatttcataaaaccccatctatatggtccaagatgcagaaaactatagtgcttttgacaagtggcacataacctcgtgtaggtactaaagtttcacaaaaccacaccgttaaccattttggcatactcctatatcaaaattttaaaaaccggatataacagttatacgatggattaaaaaactcataaatttgagatgtgattgtataaccccatcaagtgtggttttgtgaaactttaggaccataatacctggggttacatgccacgtgccaaaatcactgtggttttgtgcaacttggacaatattatgtgggattttatgaaatttactcttaaatcttaggtgttctctttactctcttgttgacaaattgcgccactacattaaattgaattgttataatacctgatattaattaatttgctgatgcattatgggtttgtgcttatatttaatgtgagtcctgtgagtttttggtcaactatttggtggtttgatactaacatgaaatatagttaccttatatttggtgttagtaaagtatacattttagatgcatgcatttctaggtccaaactttcggtgcacttgaatatttgcctcaactcatcaacatgaactaatctatcacaagttcacaatgtcacattttatgtaaatgcatttagctacaaattaattaaaacaatgttgtgttggtacaatgcctttttatatatttgatagttacaaattacgacaagtcctacatgtcttgtttttgtcaacaggaagttgaacggtcgttttccttttggggaacctctgaaggtgatgctgtccacccagctgagtgtatgcaccagttgcttgagcaagtacggcgccataaagtaaacattgatgggaacgtttgtactgttatggtcactacattagttcttgaggtatgcttcaactgcttgtctcatgctccagtcagtcacttattatggtgtaacttaggccctgtttgtttcaacttaagattattgtaatctagattattgaaccagattactataagctggattataataagccggcatagaataagctgttagctgtttgtttctctggattattagttgttagccgcccaataatctaaaaaagcacctttagagtggattaccagattatagtaatctggtttatagattgtaatacagtattatctatcataataagttatatgtttgtttcagcttactcctaataatccagattataataatcctaagctgaatcaaacagggccttagatgtctctgtcatatgtccaatagatcacgatgagctgtttctcaagattatagtatgtgctgtattgccaacgagaaaggtatatggagatgtatttaggacctaggagttaggagaactcgacccctagaattcagtcacaacgttttctaatggcatagtcagatgactgaacatgcactccctagatgtcacaatatgacaaaagacttcaggggtattaggtttatgcatatttgtaccctgaccttagaccttgatggaaatgcatgaatatgagaattttcatcttcattgaatggtctcaagagcttcggattcgttgataatgcctactagttgcctaaggataaaagtgtcttgacatagtaggtcacagttaaagtgattctttgttggttgcagaattgttttcaaaaaaagtagtgggaaaaggtgctttatagcagaacatctttagcaacatatttaaaactggagaaatggtgtaaataaccaaactaccatagcggaacctcatgaaatatcatatatatgactcttatagcttacttttagtcagtgttctggaaatctggctctgtaattcaaagtacatgtgcctctgtactgctttgtgttcctacctatttctgcttctgcgttagtttccttttgttaaaagggaaataattgtcatgaacttttgtttctttctcattctctcatactatctatagcctattgcttattgctccattacagatccttgagtttgttttttattttacagggctggcagcgcaagttggatccagattacaatgttatgaaaacattacaaactttactttttaaggaagactgggccaagtctcttcagtacacaatcgaagggcttatggcaccttagggatgcattggaatccactaaaaaattttgaccccttttttgcgcagttgatgagatattggaggatgctccttcgcaccagtacatctagtttctttttcctgtttacttttaaattccacagttttgtacccatcttggccagtgctgcttaaacggccatgtctaattaataattgcagcattttttcaagctaccagagaagtgtgctctggacccacaataccctgggattatctgcttatgcactctgcaggccaaaggatgcgttctcctccatgaaatttctgttaatagctcttagaagatgtagcaaaaggccttcgctgatgatctttttgtaactcgagaggtgtcagtgaacaagaggttttttattgtatacacagatacagctaactgttccaaaaaaaacctacgtcatgcctgacaaaattcatggattgccc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060677.1 RefSeq:Os04g0660200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

Os05g0323800

2014-06-26T09:25:07Z

Littlescrew: /* References */

Please input one-sentence summary here.

''OsABC1-7'' is located in chromosome 5 and contains 8 extrons. This gene encodes a protein of 538 amno acids.
==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0323800|
Description = Protein kinase domain containing protein|
Version = NM_001061729.1 GI:115463188 GeneID:4338416|
Length = 2789 bp|
Definition = Oryza sativa Japonica Group Os05g0323800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:15019784..15022572|
CDS = 15020077..15020124,15020840..15021395,15021486..15021669,15021785..15022154,15022257..15022379 |
GCID = <gbrowseImage1>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatgtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttag</cdnaseq>|
AA = <aaseq>MDEFARRVYQELNYVQEGQNARRFKKLYADKQDVLVPDIFWDYT SAKVLTMEWIEGVKLNQQAAIEKQGLKVLDLVNIGIQCSLRQLLEYGYFHADPHPGNI LATPEGKLAFLDFGMMSETPEDARVAIIGHVVHMVNRDYEAMARDYYALDFLEPDVDV SPIVPALKSFFDDALNSTVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG LALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGS QDREFAAKDALQPVLKLLLGPDGEELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLK PLISSGNPAGPFKISDTEREQMIELRDRVFRIWGLLRSSDGFDPTILQPIVQVLQEPE ARVLGSRVAGGVTQRLAARLLQQLLRTPPAPGSP</aaseq>|
DNA = <dnaseqindica>294..341#1057..1612#1703..1886#2002..2371#2474..2596#tgcaggattcgcttcccacgtttccggatgaagaggcatttgcatgtatcgagagggagcttggctttcctcttgattcaatctactcaacaatatcaccttccccaattgctgctgcaagtttaggtcaagtttataaggcacggttaaaatactctgggcaactggtagctgtcaaggtgcaaaggcctggtattgaggatattatagggcttgatttttatctactgaggggccttggatatctaataaataaatatgtcgactttatatccagtgatgttgttgctctcatggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggtacaattttattgttcttttgaacctttttgcacataatctgatcaatatctgcagtatacatgtatgccactacttttcctactgatggatgttacactgtacctgtgaataacagggtttgtactttcagcatgagttctatggggcattgaaattccgaaatttcgtaacattttttttgaacgaatcggcacttagagtgcgccaatttcattgaataaagcaggaggaaaactgtacaaaagggaaaattaaggtaaaatctgtgccaggcgtttagcttctgctaggacccaagtctggaacactctctggttcctctctttccatatttcccaagtcattagaagtagttgggtgtgaactcccttcctaggcgtaccagcgcatgttgctagcgctgtccaccaagaatggattgaagtagcggggtaccatttcgtaacattttaaattcaaacaagaaagatatcaaacttacattgcaaactcttccagtgaatgcttcactgaattagcttacacgctcagttgcttaatctgtagaatttttgtttttttgaacgggatagctggagagctgcttattttaattaagaggaaaggaaataatataaagtttttacagaggtgttgtacaaagtaccagagctttgtagaattatttcctgttggttcatctacttgatggtagtgaaaactttgaatgcaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatggtatgttttcctgttgtcagatgctagttctcacttgtatgctaattctgctcatgtaatgatacaacttgtctatttattcttaactagtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcaggcaagtttatgtcctcatgaagtagttaatgaggagttttgactactcttgtcagtaattgcatcttgtactgattattctactgctatttaaccctagtattgcttctatacagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtatacttcagcttcatttctcagtacgtgtgaatgtgtgattcaacctctatgaagaaatattttagctgataccatggagcaattttgatattcattcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttagcagataagacatgtaaattcacacggtactttccacaggaaagagaaaaggaaatgtaattcggaaatcaagtataaagttgatttcttcattcatgccggataaaaagatcccctagatgtttgtagattgttctcaaagcctgaaaaattttgggtctacgaaaatcaggaactcttctccacttgaagcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061729.1 RefSeq:Os05g0323800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0323800

2014-06-26T09:24:21Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

''OsABC1-7'' is located in chromosome 5 and contains 8 extrons. This gene encodes a protein of 538 amno acids.
==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0323800|
Description = Protein kinase domain containing protein|
Version = NM_001061729.1 GI:115463188 GeneID:4338416|
Length = 2789 bp|
Definition = Oryza sativa Japonica Group Os05g0323800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:15019784..15022572|
CDS = 15020077..15020124,15020840..15021395,15021486..15021669,15021785..15022154,15022257..15022379 |
GCID = <gbrowseImage1>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatgtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttag</cdnaseq>|
AA = <aaseq>MDEFARRVYQELNYVQEGQNARRFKKLYADKQDVLVPDIFWDYT SAKVLTMEWIEGVKLNQQAAIEKQGLKVLDLVNIGIQCSLRQLLEYGYFHADPHPGNI LATPEGKLAFLDFGMMSETPEDARVAIIGHVVHMVNRDYEAMARDYYALDFLEPDVDV SPIVPALKSFFDDALNSTVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG LALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGS QDREFAAKDALQPVLKLLLGPDGEELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLK PLISSGNPAGPFKISDTEREQMIELRDRVFRIWGLLRSSDGFDPTILQPIVQVLQEPE ARVLGSRVAGGVTQRLAARLLQQLLRTPPAPGSP</aaseq>|
DNA = <dnaseqindica>294..341#1057..1612#1703..1886#2002..2371#2474..2596#tgcaggattcgcttcccacgtttccggatgaagaggcatttgcatgtatcgagagggagcttggctttcctcttgattcaatctactcaacaatatcaccttccccaattgctgctgcaagtttaggtcaagtttataaggcacggttaaaatactctgggcaactggtagctgtcaaggtgcaaaggcctggtattgaggatattatagggcttgatttttatctactgaggggccttggatatctaataaataaatatgtcgactttatatccagtgatgttgttgctctcatggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggtacaattttattgttcttttgaacctttttgcacataatctgatcaatatctgcagtatacatgtatgccactacttttcctactgatggatgttacactgtacctgtgaataacagggtttgtactttcagcatgagttctatggggcattgaaattccgaaatttcgtaacattttttttgaacgaatcggcacttagagtgcgccaatttcattgaataaagcaggaggaaaactgtacaaaagggaaaattaaggtaaaatctgtgccaggcgtttagcttctgctaggacccaagtctggaacactctctggttcctctctttccatatttcccaagtcattagaagtagttgggtgtgaactcccttcctaggcgtaccagcgcatgttgctagcgctgtccaccaagaatggattgaagtagcggggtaccatttcgtaacattttaaattcaaacaagaaagatatcaaacttacattgcaaactcttccagtgaatgcttcactgaattagcttacacgctcagttgcttaatctgtagaatttttgtttttttgaacgggatagctggagagctgcttattttaattaagaggaaaggaaataatataaagtttttacagaggtgttgtacaaagtaccagagctttgtagaattatttcctgttggttcatctacttgatggtagtgaaaactttgaatgcaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatggtatgttttcctgttgtcagatgctagttctcacttgtatgctaattctgctcatgtaatgatacaacttgtctatttattcttaactagtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcaggcaagtttatgtcctcatgaagtagttaatgaggagttttgactactcttgtcagtaattgcatcttgtactgattattctactgctatttaaccctagtattgcttctatacagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtatacttcagcttcatttctcagtacgtgtgaatgtgtgattcaacctctatgaagaaatattttagctgataccatggagcaattttgatattcattcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttagcagataagacatgtaaattcacacggtactttccacaggaaagagaaaaggaaatgtaattcggaaatcaagtataaagttgatttcttcattcatgccggataaaaagatcccctagatgtttgtagattgttctcaaagcctgaaaaattttgggtctacgaaaatcaggaactcttctccacttgaagcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061729.1 RefSeq:Os05g0323800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0323800

2014-06-26T09:23:26Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

''OsABC1-7'' is located in chromosome 5 and contains 8 extrons. This gene encodes a protein of 538 amno acids.
==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0323800|
Description = Protein kinase domain containing protein|
Version = NM_001061729.1 GI:115463188 GeneID:4338416|
Length = 2789 bp|
Definition = Oryza sativa Japonica Group Os05g0323800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:15019784..15022572|
CDS = 15020077..15020124,15020840..15021395,15021486..15021669,15021785..15022154,15022257..15022379 |
GCID = <gbrowseImage1>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:15019784..15022572
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatgtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttag</cdnaseq>|
AA = <aaseq>MDEFARRVYQELNYVQEGQNARRFKKLYADKQDVLVPDIFWDYT SAKVLTMEWIEGVKLNQQAAIEKQGLKVLDLVNIGIQCSLRQLLEYGYFHADPHPGNI LATPEGKLAFLDFGMMSETPEDARVAIIGHVVHMVNRDYEAMARDYYALDFLEPDVDV SPIVPALKSFFDDALNSTVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG LALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGS QDREFAAKDALQPVLKLLLGPDGEELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLK PLISSGNPAGPFKISDTEREQMIELRDRVFRIWGLLRSSDGFDPTILQPIVQVLQEPE ARVLGSRVAGGVTQRLAARLLQQLLRTPPAPGSP</aaseq>|
DNA = <dnaseqindica>294..341#1057..1612#1703..1886#2002..2371#2474..2596#tgcaggattcgcttcccacgtttccggatgaagaggcatttgcatgtatcgagagggagcttggctttcctcttgattcaatctactcaacaatatcaccttccccaattgctgctgcaagtttaggtcaagtttataaggcacggttaaaatactctgggcaactggtagctgtcaaggtgcaaaggcctggtattgaggatattatagggcttgatttttatctactgaggggccttggatatctaataaataaatatgtcgactttatatccagtgatgttgttgctctcatggatgaatttgctcgaagagtttaccaagagcttaattatgtccaggtacaattttattgttcttttgaacctttttgcacataatctgatcaatatctgcagtatacatgtatgccactacttttcctactgatggatgttacactgtacctgtgaataacagggtttgtactttcagcatgagttctatggggcattgaaattccgaaatttcgtaacattttttttgaacgaatcggcacttagagtgcgccaatttcattgaataaagcaggaggaaaactgtacaaaagggaaaattaaggtaaaatctgtgccaggcgtttagcttctgctaggacccaagtctggaacactctctggttcctctctttccatatttcccaagtcattagaagtagttgggtgtgaactcccttcctaggcgtaccagcgcatgttgctagcgctgtccaccaagaatggattgaagtagcggggtaccatttcgtaacattttaaattcaaacaagaaagatatcaaacttacattgcaaactcttccagtgaatgcttcactgaattagcttacacgctcagttgcttaatctgtagaatttttgtttttttgaacgggatagctggagagctgcttattttaattaagaggaaaggaaataatataaagtttttacagaggtgttgtacaaagtaccagagctttgtagaattatttcctgttggttcatctacttgatggtagtgaaaactttgaatgcaggaaggccaaaatgcaagaaggtttaagaagttatatgctgacaagcaagatgtgctggtccctgatatattttgggactacacaagtgcaaaggttctgacaatggagtggattgagggtgtaaagttaaaccagcaagcagctattgaaaaacaaggtttgaaggttctggatttggtgaacattggtattcagtgcagcttaaggcaactattggagtacggttactttcatgctgatcctcatcctggtaacatattggcaacacctgaagggaagcttgcctttcttgattttggtatgatgagtgagaccccagaggatgcaagagtagccatcataggccatgttgttcacatggtcaatagggactatgaagcgatggctcgtgattattatgctctcgattttttggaacctgatgtagatgtctccccaattgtccctgctcttaagagtttctttgatgatgctctgaactcaacagtaagtgagctaaacttcaaaaccatagttgatggcttaggcgctgttctctaccagtacccatttaatggtatgttttcctgttgtcagatgctagttctcacttgtatgctaattctgctcatgtaatgatacaacttgtctatttattcttaactagtaccggcatactacgcattgatactgcgatcgctcactgtactggaaggtttagcactctatgctgatcccaattttaaggtgctcgctgcctcgtacccttactttgcgaaaaggctactcactgatcccaatccatatctcagagatgctttaattgagctactattcaaggatggaaaattcaggcaagtttatgtcctcatgaagtagttaatgaggagttttgactactcttgtcagtaattgcatcttgtactgattattctactgctatttaaccctagtattgcttctatacagatggaataggcttgaaaatcttcttgttcaagggagccaagatagagagtttgcagcaaaagatgctttgcaaccagttctaaagcttctacttggtcctgatggggaggaattgcgagtcctagttgtgaaagaagcggttcgtgtcacagaagccatcacttttggaacgctgattgattcgtataatgcagctccagaatttcttaaaccattaatatccagtggtaatccagccggaccgttcaagataagcgacactgaaagggaacaaatgattgagctgcgggacagggttttcagaatatggggccttctgagatcctcggatggctttgacccaaccatcttgcaaccaattgtgcaggtatacttcagcttcatttctcagtacgtgtgaatgtgtgattcaacctctatgaagaaatattttagctgataccatggagcaattttgatattcattcaggtgctacaagagccagaggcccgcgttcttggctcccgggttgcaggaggtgttacgcagcgcctcgcggcccgcctgttgcagcagctgctgagaactccacctgctccaggatctccttagcagataagacatgtaaattcacacggtactttccacaggaaagagaaaaggaaatgtaattcggaaatcaagtataaagttgatttcttcattcatgccggataaaaagatcccctagatgtttgtagattgttctcaaagcctgaaaaattttgggtctacgaaaatcaggaactcttctccacttgaagcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061729.1 RefSeq:Os05g0323800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os06g0701300

2014-06-26T09:19:32Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-8''is located in chromosome 6 with 18 extrons. This gene encodes a protein with 695 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0701300|
Description = Beta-lactamase family protein|
Version = NM_001065018.1 GI:115469767 GeneID:4341968|
Length = 7696 bp|
Definition = Oryza sativa Japonica Group Os06g0701300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:30393289..30400984|
CDS = 30394072..30394222,30395429..30395457,30395541..30395613,30396650..30396807,30396888..30397014 ,30397101..30397176,30397251..30397308,30397393..30397491,30397582..30397710 ,30398236..30398357,30398470..30398638,30398732..30398832,30398985..30399111 ,30399187..30399276,30399419..30399505,30399606..30399833,30399932..30400006 |
GCID = <gbrowseImage1>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcaatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggttcatcatcttctgaatcatacatctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatga</cdnaseq>|
AA = <aaseq>MGWGNTLTRRLKVFSMALFIYFDYKAVQKRVKWVGAGKKDAIWT KTHERNARRVLNLMIELEGLWVKMGQYLSTRADVLPEPYINVLKQLQDSLPPRPLEEV RGTIEKELGKPMNDLFANFVLDPLATASIAQVHRATLVDGREVVVKIQHDGIKDIILE DLKNAKSLVEWIAWAEPQYNFNPMIDEWCKEAPKELDFNHEAENTKAVSSNLSRKTNC ESGAVSSAVDVLIPEVIQSTDKVLILQYMDGIRLNDNDSLEAYGVDKQRLVEEITRAY AHQIYVDGFFNGDPHPGNFLVSKEPPHKPILLDFGLTKRISQSMRQALAKMFLSCAEG DHVALLSAFAEMGLKLRVDMPEQAMEIATVFFRQSTTANEAKENIKTLNDQRERNVKA LQEKMKMNKKEVQRFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAES TLLGSMTRGPTANSQWIYDSPVNSEVESKLRNLLLELGSNKILGIQVCAYKDGKVIID TAAGTLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPKFGT NKKELIKVHHLLNHTSGSILRRAGGRRRHSSAALRWWLQAATRQPCPHPQVPHHAVQE EEEGRFEE</aaseq>|
DNA = <dnaseqindica>6763..6913#5528..5556#5372..5444#4178..4335#3971..4097#3809..3884#3677..3734#3494..3592#3275..3403#2628..2749#2347..2515#2153..2253#1874..2000#1709..1798#1480..1566#1152..1379#979..1053#tgtctgaactctgaactctctctctctctctctctcctcctcttcccggcggagtcccccacctcgcctcccctccctgcgcgcggcaccaccggcgggaaggtctccggagtgcgcggcggtgtggacgtcttcctaccctccccgtcccaaccccgcggccgcttcgttcttggtcgtcctcggtgtgttcttgttgttgttgttgttgttcggatcgagttgatttcgtgcccctcccattatggaatcaggtttcttcagggtttctctgatgtagggtagaagattgtttggagaggccaagaaaaaaaaagttcttttggagttcagctgaactcgttgttaggtcgtttgcccctgatttagattcgattctgaggtaataaagttgcggaattgtggatgtccggaggatatccgagggttttatccgctcaatttgatgtgatcaagcaaaaaattcgtttctttttatgtttaaaggccttaatactacacaagctagtagtagtttgttttcttctgctctactgcaaaagtaagtactccttgtttgcatcccttggtggctttccagtacctaccatctgatgttgtagctccttggaaactgcttgcttatccctttgtcatgataagaatgtggtgtgaggaagaaacctgtattctttgtagttatacgctttatttgctttccttaaactctgtctttgtctgatttaatgtaaatacaagctgtcgcgcgaattcgttatcttgtcatgacttgtcaagaacagaagaacagtcctttctatgaagaagttttgagcctattgtatgtgatcggtagtgactaaggaatgctgatttggatttaccttcttgtacttgtgacattgcagaagatcaaccgtctggccgggagcctagagttgttaactacggtgtttcagagtttttttgttatctcttctgctgttgtgctgacttctaatgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggtgtggttgtatcacttcttcatgctgttctttcaataaaaagtctcaatccattctactagtagaagcagattaacatcttcttgaggtacaagcaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcatcctcataactaattttgcttcatctgtagtcaatccaaatattaacatgtagctaatcgtagtcgttaactcaattcttgtctctcatgttcaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcagtaagttctgttatattggaatgaacttctttcatctgatggaaattcatagtatgttttttttgacgaaatcctcgagcaacttgctaattttttttgtcatggtagtatgttcatacgagtcttcatgtacttttgtcagatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggtttgcctctattctgaaaaaacggacttatgtaaaatgtgcaggattgctatatcattttcttaatgttgtcaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcaggtaattacccctttcagttctcatactcctctctccatataaaagaacatgcatgctcttgtgactcatccatattttttttaaaagtaaaggtctagtcactaatgaacatatcatcctgataatgtatgctataaaatccttaattttagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcaggtctgagttcttttacttcatcctgtttgtcatcgtgtcagtttttccggttcagttgacagatcatctaatccattcttctttgtgtaccagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggtatttcaattttatgtgccttgaagagatcttctgtcacctcaatttttttattctccatctgtaattcttgcaaattcatttgtgctgacaatgcattatttttctgtaggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgaggtttgacactttgatcttctaaataatacatacacaaggaaacaaataatggagttaatcaaacatggttgtcttgttggcatctacaagctgcagccatttccattggagtagatgcgatcttttattataacaagaatggatttttgtttactttccgatctttttgtatcctagtttagtcctatctttcagtctttactcataagtggtattgcaaagtggcagatgaatatcacatttaacaagctataagaaaacaaagacagaatctggaactaatctttattttcttctctactatgctttggtgttccttgaatcaactttgagacttagaaagtgcactggaacgttaagtgaccacatgcactagtattttgacgtgtcaaaatttgataattaaaattttgtgagatagggttcttcggtttattctaccttttgctgtttgtgaaccagttgctcatgctatgattaaatttcttaaactacatttctgatatttaacatgtcaatgggtagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggtaggaggctaccactactgtaatctgtatccctcctcttgtattaatttggaagtttggattaactgtttggttatgacttttctttaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagtgagtaggcatgccttttacttcatatgtgtttagtttgtcaaccaagaaataggtgttacatgaacattttctcgcctttaggttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagaggtatgtttttcattctttcctttgaaatatccagtatcatggtaacatgctctctattatctgcacttatgcagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggtgagatgcctgtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtaggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtaggttgataatctcatgcgattcatttacatgctatgactttgcttcattggtgccttacaaatcttccttttaccaggtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggtgagtgcttaatcacaatgccaagttttttttttcttaacatgctagtgtaaatatgtttgcaggccgtcgtattacagtacattatactacctcagattccaaataagtcgtttagacttatgcacaagaattaagaaaacaacagaactgactattttaccctacacttatactacatgaaagatatgaatcatttatttgttgagagagctagcatttatttgccaaggtcaagcatggaagagaagatgaagaagtggctagaagttccaaaacgacttatatttagaatacctcatcttagtagcttactagtgtatcaaaaataatatttggcctaacagtaacgagcatggtagtatgccaccctgtttaagtaggcctcctcttgatctactaacattctaacaaaataaagatattccatctttatatacatggcaaagtcactcacatgcgcaaacaacttttattctgaagcatcaaattgttgtaccgtatttctgtgagtctatgttgaacaataaaaatggacatggagaatgggtgccagtgttcccatgattaggctgaaccatgttagtgcaggtggcaatccttcacaattatgacatgtgagtcactgttgaaacataaaatttagattggtgcagtgtagtttcctgcagttgcatccacgttatccaggtcacaatatttcttgatattatctacattctagtgcttaaaaagtataaagcatcagattcttgtataaagcaagcaactcctctaaatctctaacagtgatggtactacagagaacattgagcatcttttccctgctaccttaggcttttatgtgcattgcaatccattagtgacaggctgagaaaggcctggggtcttctggctagcaccacaagatgtgggctagccgacccaggttcaagcctcacccctcttgataaattttgatatgagaatctttcctctcatatccagtgtttttttattattagtgacaggctgacagcatactgttatctttcaggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggtactagaacttctttttttgttgtttgttgaaacactgtttcttgggattaacagactctgatttgcaattttctactaaaggttcatcatcttctgaatcatacatctggtttacataatgcattgggagatgtgatgaagagtgatccgttgttggtatgtgactgggaagagatgctgcaccagattaccaagtgtacgccggaaacagaaccgggttctgaacaaatgtatcactacttatcctttggttggctgtgtggtggaatcatagaggtatgtctctcccgagcatcacatacaccgagttcatttattttcaatgggagtactgaacctttttaactggatcagtggatctttatggcttcacatagttatactaatttttaatctggttatgggcttaattaaatgcacagcccaccaagttatatttttttggttatgggctattggcaaagtagaggtaaataactgaaaacaacacgtgtttgtatgtcactgttctgtgtgaacttaatttcatgaatcctaacgctgatatttggtgataatagcatgcgtccggaaagaagcttcaagaggtcctagaagaggccattgttcatcctcttcacattaacggggagctatatattggcattcctccaggtataactaacaaaacttcccagtttagctttcaacaaaataggtgtacgcattgatataatgatggatattttttttttctacaaatccataaacatattaaccttttcgagacgtgttcatgtcatataagtttgatgagtgaaaaaattgcgctagatacttaccttttttttgcggggtgctatattcttgctattattactgttccaaagattatttgaaaagagactacaatgcatatgtgaagtacagtcatgagttcgatgcttgtccaaagaacgcattttctctgtctctggcttgttttgacatgttccataaacatactcacccacgcttttggagatgtgttccataggtttgatgagtgaaattgctgctatattcttaccgttgtagataatatcctacatgtgaatatgtgatgttcatcgattttccgcccttgtcaggtgtcgaatctcgccttgcggcactgacagtcgacatggaggagctcgagaagctgtcaggattcagagcaggaccagacgtcccacaggagctgctcagcaatgtcgcccagatggccaccggcctacctgtcctcttcaacacgctcaacatccgccgcgccatcctccccgctgccaatggccactgctcggcgcgcgctctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatgatgtcggcgtcgctgacaaggacgggtacacccagctccgcaccagcgacggcagcgacgaggggtcgacggtgtcagcggtggtggccgggaacggcagtggcagcggcagcagcatgttcgtcgacggcggcaccaagatgctcgacgcgttcatgggcgtcggcgacttctccggcatgatccacccgaacggcaagttcgggctcgggttcaggaggtacggctatggcgccggcgctggcgagaaggtggcgacgacgacgttcgggcactccgggatgggcgggtcgacggggttctgcgacgtggagcacgggctggccatggccgtgacggtgaacaagatgtcgctgggcggcgtgacgcggcgcgtggtccggctggtgtgcgaggagctgggcgtgccggtgcccgacgagttctccgtcgccggcgacaagggccccgacatggtgctcaacctcgcgccgccggagtagcaccaacctgccaggccactactactgacatttcatcatacactttgatacatatacacatgtagctaggtaagagtaaactcatgatgatataacaaaatgaggggaaaaattaatgttctttccgggtatacgtattagtacaatatagtagtacaaatttatgccatttggatgtggcttcgtcatatatactccaaattatacatgtatacaagatttttgtttcatttttcctgtttacatttgcaactgtgaggtgccaagtgatgccatgttggaaaattcgaatatgctgttgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065018.1 RefSeq:Os06g0701300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0701300

2014-06-26T09:18:54Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-8''is located in chromosome 6 with 18 extrons. This gene encodes a protein with 695 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0701300|
Description = Beta-lactamase family protein|
Version = NM_001065018.1 GI:115469767 GeneID:4341968|
Length = 7696 bp|
Definition = Oryza sativa Japonica Group Os06g0701300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:30393289..30400984|
CDS = 30394072..30394222,30395429..30395457,30395541..30395613,30396650..30396807,30396888..30397014 ,30397101..30397176,30397251..30397308,30397393..30397491,30397582..30397710 ,30398236..30398357,30398470..30398638,30398732..30398832,30398985..30399111 ,30399187..30399276,30399419..30399505,30399606..30399833,30399932..30400006 |
GCID = <gbrowseImage1>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcaatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggttcatcatcttctgaatcatacatctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatga</cdnaseq>|
AA = <aaseq>MGWGNTLTRRLKVFSMALFIYFDYKAVQKRVKWVGAGKKDAIWT KTHERNARRVLNLMIELEGLWVKMGQYLSTRADVLPEPYINVLKQLQDSLPPRPLEEV RGTIEKELGKPMNDLFANFVLDPLATASIAQVHRATLVDGREVVVKIQHDGIKDIILE DLKNAKSLVEWIAWAEPQYNFNPMIDEWCKEAPKELDFNHEAENTKAVSSNLSRKTNC ESGAVSSAVDVLIPEVIQSTDKVLILQYMDGIRLNDNDSLEAYGVDKQRLVEEITRAY AHQIYVDGFFNGDPHPGNFLVSKEPPHKPILLDFGLTKRISQSMRQALAKMFLSCAEG DHVALLSAFAEMGLKLRVDMPEQAMEIATVFFRQSTTANEAKENIKTLNDQRERNVKA LQEKMKMNKKEVQRFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAES TLLGSMTRGPTANSQWIYDSPVNSEVESKLRNLLLELGSNKILGIQVCAYKDGKVIID TAAGTLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPKFGT NKKELIKVHHLLNHTSGSILRRAGGRRRHSSAALRWWLQAATRQPCPHPQVPHHAVQE EEEGRFEE</aaseq>|
DNA = <dnaseqindica>6763..6913#5528..5556#5372..5444#4178..4335#3971..4097#3809..3884#3677..3734#3494..3592#3275..3403#2628..2749#2347..2515#2153..2253#1874..2000#1709..1798#1480..1566#1152..1379#979..1053#tgtctgaactctgaactctctctctctctctctctcctcctcttcccggcggagtcccccacctcgcctcccctccctgcgcgcggcaccaccggcgggaaggtctccggagtgcgcggcggtgtggacgtcttcctaccctccccgtcccaaccccgcggccgcttcgttcttggtcgtcctcggtgtgttcttgttgttgttgttgttgttcggatcgagttgatttcgtgcccctcccattatggaatcaggtttcttcagggtttctctgatgtagggtagaagattgtttggagaggccaagaaaaaaaaagttcttttggagttcagctgaactcgttgttaggtcgtttgcccctgatttagattcgattctgaggtaataaagttgcggaattgtggatgtccggaggatatccgagggttttatccgctcaatttgatgtgatcaagcaaaaaattcgtttctttttatgtttaaaggccttaatactacacaagctagtagtagtttgttttcttctgctctactgcaaaagtaagtactccttgtttgcatcccttggtggctttccagtacctaccatctgatgttgtagctccttggaaactgcttgcttatccctttgtcatgataagaatgtggtgtgaggaagaaacctgtattctttgtagttatacgctttatttgctttccttaaactctgtctttgtctgatttaatgtaaatacaagctgtcgcgcgaattcgttatcttgtcatgacttgtcaagaacagaagaacagtcctttctatgaagaagttttgagcctattgtatgtgatcggtagtgactaaggaatgctgatttggatttaccttcttgtacttgtgacattgcagaagatcaaccgtctggccgggagcctagagttgttaactacggtgtttcagagtttttttgttatctcttctgctgttgtgctgacttctaatgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggtgtggttgtatcacttcttcatgctgttctttcaataaaaagtctcaatccattctactagtagaagcagattaacatcttcttgaggtacaagcaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcatcctcataactaattttgcttcatctgtagtcaatccaaatattaacatgtagctaatcgtagtcgttaactcaattcttgtctctcatgttcaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcagtaagttctgttatattggaatgaacttctttcatctgatggaaattcatagtatgttttttttgacgaaatcctcgagcaacttgctaattttttttgtcatggtagtatgttcatacgagtcttcatgtacttttgtcagatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggtttgcctctattctgaaaaaacggacttatgtaaaatgtgcaggattgctatatcattttcttaatgttgtcaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcaggtaattacccctttcagttctcatactcctctctccatataaaagaacatgcatgctcttgtgactcatccatattttttttaaaagtaaaggtctagtcactaatgaacatatcatcctgataatgtatgctataaaatccttaattttagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcaggtctgagttcttttacttcatcctgtttgtcatcgtgtcagtttttccggttcagttgacagatcatctaatccattcttctttgtgtaccagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggtatttcaattttatgtgccttgaagagatcttctgtcacctcaatttttttattctccatctgtaattcttgcaaattcatttgtgctgacaatgcattatttttctgtaggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgaggtttgacactttgatcttctaaataatacatacacaaggaaacaaataatggagttaatcaaacatggttgtcttgttggcatctacaagctgcagccatttccattggagtagatgcgatcttttattataacaagaatggatttttgtttactttccgatctttttgtatcctagtttagtcctatctttcagtctttactcataagtggtattgcaaagtggcagatgaatatcacatttaacaagctataagaaaacaaagacagaatctggaactaatctttattttcttctctactatgctttggtgttccttgaatcaactttgagacttagaaagtgcactggaacgttaagtgaccacatgcactagtattttgacgtgtcaaaatttgataattaaaattttgtgagatagggttcttcggtttattctaccttttgctgtttgtgaaccagttgctcatgctatgattaaatttcttaaactacatttctgatatttaacatgtcaatgggtagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggtaggaggctaccactactgtaatctgtatccctcctcttgtattaatttggaagtttggattaactgtttggttatgacttttctttaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagtgagtaggcatgccttttacttcatatgtgtttagtttgtcaaccaagaaataggtgttacatgaacattttctcgcctttaggttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagaggtatgtttttcattctttcctttgaaatatccagtatcatggtaacatgctctctattatctgcacttatgcagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggtgagatgcctgtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtaggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtaggttgataatctcatgcgattcatttacatgctatgactttgcttcattggtgccttacaaatcttccttttaccaggtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggtgagtgcttaatcacaatgccaagttttttttttcttaacatgctagtgtaaatatgtttgcaggccgtcgtattacagtacattatactacctcagattccaaataagtcgtttagacttatgcacaagaattaagaaaacaacagaactgactattttaccctacacttatactacatgaaagatatgaatcatttatttgttgagagagctagcatttatttgccaaggtcaagcatggaagagaagatgaagaagtggctagaagttccaaaacgacttatatttagaatacctcatcttagtagcttactagtgtatcaaaaataatatttggcctaacagtaacgagcatggtagtatgccaccctgtttaagtaggcctcctcttgatctactaacattctaacaaaataaagatattccatctttatatacatggcaaagtcactcacatgcgcaaacaacttttattctgaagcatcaaattgttgtaccgtatttctgtgagtctatgttgaacaataaaaatggacatggagaatgggtgccagtgttcccatgattaggctgaaccatgttagtgcaggtggcaatccttcacaattatgacatgtgagtcactgttgaaacataaaatttagattggtgcagtgtagtttcctgcagttgcatccacgttatccaggtcacaatatttcttgatattatctacattctagtgcttaaaaagtataaagcatcagattcttgtataaagcaagcaactcctctaaatctctaacagtgatggtactacagagaacattgagcatcttttccctgctaccttaggcttttatgtgcattgcaatccattagtgacaggctgagaaaggcctggggtcttctggctagcaccacaagatgtgggctagccgacccaggttcaagcctcacccctcttgataaattttgatatgagaatctttcctctcatatccagtgtttttttattattagtgacaggctgacagcatactgttatctttcaggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggtactagaacttctttttttgttgtttgttgaaacactgtttcttgggattaacagactctgatttgcaattttctactaaaggttcatcatcttctgaatcatacatctggtttacataatgcattgggagatgtgatgaagagtgatccgttgttggtatgtgactgggaagagatgctgcaccagattaccaagtgtacgccggaaacagaaccgggttctgaacaaatgtatcactacttatcctttggttggctgtgtggtggaatcatagaggtatgtctctcccgagcatcacatacaccgagttcatttattttcaatgggagtactgaacctttttaactggatcagtggatctttatggcttcacatagttatactaatttttaatctggttatgggcttaattaaatgcacagcccaccaagttatatttttttggttatgggctattggcaaagtagaggtaaataactgaaaacaacacgtgtttgtatgtcactgttctgtgtgaacttaatttcatgaatcctaacgctgatatttggtgataatagcatgcgtccggaaagaagcttcaagaggtcctagaagaggccattgttcatcctcttcacattaacggggagctatatattggcattcctccaggtataactaacaaaacttcccagtttagctttcaacaaaataggtgtacgcattgatataatgatggatattttttttttctacaaatccataaacatattaaccttttcgagacgtgttcatgtcatataagtttgatgagtgaaaaaattgcgctagatacttaccttttttttgcggggtgctatattcttgctattattactgttccaaagattatttgaaaagagactacaatgcatatgtgaagtacagtcatgagttcgatgcttgtccaaagaacgcattttctctgtctctggcttgttttgacatgttccataaacatactcacccacgcttttggagatgtgttccataggtttgatgagtgaaattgctgctatattcttaccgttgtagataatatcctacatgtgaatatgtgatgttcatcgattttccgcccttgtcaggtgtcgaatctcgccttgcggcactgacagtcgacatggaggagctcgagaagctgtcaggattcagagcaggaccagacgtcccacaggagctgctcagcaatgtcgcccagatggccaccggcctacctgtcctcttcaacacgctcaacatccgccgcgccatcctccccgctgccaatggccactgctcggcgcgcgctctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatgatgtcggcgtcgctgacaaggacgggtacacccagctccgcaccagcgacggcagcgacgaggggtcgacggtgtcagcggtggtggccgggaacggcagtggcagcggcagcagcatgttcgtcgacggcggcaccaagatgctcgacgcgttcatgggcgtcggcgacttctccggcatgatccacccgaacggcaagttcgggctcgggttcaggaggtacggctatggcgccggcgctggcgagaaggtggcgacgacgacgttcgggcactccgggatgggcgggtcgacggggttctgcgacgtggagcacgggctggccatggccgtgacggtgaacaagatgtcgctgggcggcgtgacgcggcgcgtggtccggctggtgtgcgaggagctgggcgtgccggtgcccgacgagttctccgtcgccggcgacaagggccccgacatggtgctcaacctcgcgccgccggagtagcaccaacctgccaggccactactactgacatttcatcatacactttgatacatatacacatgtagctaggtaagagtaaactcatgatgatataacaaaatgaggggaaaaattaatgttctttccgggtatacgtattagtacaatatagtagtacaaatttatgccatttggatgtggcttcgtcatatatactccaaattatacatgtatacaagatttttgtttcatttttcctgtttacatttgcaactgtgaggtgccaagtgatgccatgttggaaaattcgaatatgctgttgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065018.1 RefSeq:Os06g0701300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os06g0701300

2014-06-26T09:17:53Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-8''is located in chromosome 6 with 18 extrons. This gene encodes a protein with 695 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os06g0701300|
Description = Beta-lactamase family protein|
Version = NM_001065018.1 GI:115469767 GeneID:4341968|
Length = 7696 bp|
Definition = Oryza sativa Japonica Group Os06g0701300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
AP = Chromosome 6:30393289..30400984|
CDS = 30394072..30394222,30395429..30395457,30395541..30395613,30396650..30396807,30396888..30397014 ,30397101..30397176,30397251..30397308,30397393..30397491,30397582..30397710 ,30398236..30398357,30398470..30398638,30398732..30398832,30398985..30399111 ,30399187..30399276,30399419..30399505,30399606..30399833,30399932..30400006 |
GCID = <gbrowseImage1>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008399:30393289..30400984
source=RiceChromosome06
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcaatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggttcatcatcttctgaatcatacatctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatga</cdnaseq>|
AA = <aaseq>MGWGNTLTRRLKVFSMALFIYFDYKAVQKRVKWVGAGKKDAIWT KTHERNARRVLNLMIELEGLWVKMGQYLSTRADVLPEPYINVLKQLQDSLPPRPLEEV RGTIEKELGKPMNDLFANFVLDPLATASIAQVHRATLVDGREVVVKIQHDGIKDIILE DLKNAKSLVEWIAWAEPQYNFNPMIDEWCKEAPKELDFNHEAENTKAVSSNLSRKTNC ESGAVSSAVDVLIPEVIQSTDKVLILQYMDGIRLNDNDSLEAYGVDKQRLVEEITRAY AHQIYVDGFFNGDPHPGNFLVSKEPPHKPILLDFGLTKRISQSMRQALAKMFLSCAEG DHVALLSAFAEMGLKLRVDMPEQAMEIATVFFRQSTTANEAKENIKTLNDQRERNVKA LQEKMKMNKKEVQRFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAES TLLGSMTRGPTANSQWIYDSPVNSEVESKLRNLLLELGSNKILGIQVCAYKDGKVIID TAAGTLGKYDPRPVQPDSLFPVFSVTKGITAGMVHWLVDKGKLKYEETVANIWPKFGT NKKELIKVHHLLNHTSGSILRRAGGRRRHSSAALRWWLQAATRQPCPHPQVPHHAVQE EEEGRFEE</aaseq>|
DNA = <dnaseqindica>6763..6913#5528..5556#5372..5444#4178..4335#3971..4097#3809..3884#3677..3734#3494..3592#3275..3403#2628..2749#2347..2515#2153..2253#1874..2000#1709..1798#1480..1566#1152..1379#979..1053#tgtctgaactctgaactctctctctctctctctctcctcctcttcccggcggagtcccccacctcgcctcccctccctgcgcgcggcaccaccggcgggaaggtctccggagtgcgcggcggtgtggacgtcttcctaccctccccgtcccaaccccgcggccgcttcgttcttggtcgtcctcggtgtgttcttgttgttgttgttgttgttcggatcgagttgatttcgtgcccctcccattatggaatcaggtttcttcagggtttctctgatgtagggtagaagattgtttggagaggccaagaaaaaaaaagttcttttggagttcagctgaactcgttgttaggtcgtttgcccctgatttagattcgattctgaggtaataaagttgcggaattgtggatgtccggaggatatccgagggttttatccgctcaatttgatgtgatcaagcaaaaaattcgtttctttttatgtttaaaggccttaatactacacaagctagtagtagtttgttttcttctgctctactgcaaaagtaagtactccttgtttgcatcccttggtggctttccagtacctaccatctgatgttgtagctccttggaaactgcttgcttatccctttgtcatgataagaatgtggtgtgaggaagaaacctgtattctttgtagttatacgctttatttgctttccttaaactctgtctttgtctgatttaatgtaaatacaagctgtcgcgcgaattcgttatcttgtcatgacttgtcaagaacagaagaacagtcctttctatgaagaagttttgagcctattgtatgtgatcggtagtgactaaggaatgctgatttggatttaccttcttgtacttgtgacattgcagaagatcaaccgtctggccgggagcctagagttgttaactacggtgtttcagagtttttttgttatctcttctgctgttgtgctgacttctaatgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttatatacttcgactataaggtgtggttgtatcacttcttcatgctgttctttcaataaaaagtctcaatccattctactagtagaagcagattaacatcttcttgaggtacaagcaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctgaaccctacataaatgtcctcaagcagttgcaggactcgcttcctcctcgccctcttgaagaggttcatcctcataactaattttgcttcatctgtagtcaatccaaatattaacatgtagctaatcgtagtcgttaactcaattcttgtctctcatgttcaggttcgtggaaccatagagaaagaacttgggaaacccatgaatgatctgtttgctaattttgtgctggatcctctagcaactgcatcagtaagttctgttatattggaatgaacttctttcatctgatggaaattcatagtatgttttttttgacgaaatcctcgagcaacttgctaattttttttgtcatggtagtatgttcatacgagtcttcatgtacttttgtcagatagcacaggttcatcgtgcaactcttgtagatggcagagaagtagttgtgaaaatccaacatgatggtatcaaagatatcatattagaggtttgcctctattctgaaaaaacggacttatgtaaaatgtgcaggattgctatatcattttcttaatgttgtcaggatttgaagaatgcaaaatcattagttgaatggattgcatgggcagagcctcaatataattttaacccgatgatagatgaatggtgcaaggaggcaccaaaggaacttgatttcaaccatgaggcaggtaattacccctttcagttctcatactcctctctccatataaaagaacatgcatgctcttgtgactcatccatattttttttaaaagtaaaggtctagtcactaatgaacatatcatcctgataatgtatgctataaaatccttaattttagagaacacaaaggctgtctccagtaatcttagtcgaaaaaccaattgcgagagtggtgctgtctctagtgctgttgacgtactgattccagaagttattcaggtctgagttcttttacttcatcctgtttgtcatcgtgtcagtttttccggttcagttgacagatcatctaatccattcttctttgtgtaccagtcaactgataaggttctaattttgcaatatatggatggaattcgtttgaatgacaatgattcgttagaagcatatggtgttgataagcaaagacttgtggaggagataacccgtgcatatgctcatcaaatatacgttgatggcttctttaacggcgatcctcaccctggtatttcaattttatgtgccttgaagagatcttctgtcacctcaatttttttattctccatctgtaattcttgcaaattcatttgtgctgacaatgcattatttttctgtaggcaattttcttgttagcaaggaacctccacacaagccgattctccttgattttgggcttactaaacgcatatctcaatcaatgaggcaggcactagcaaagatgtttttgtcatgcgctgaggtttgacactttgatcttctaaataatacatacacaaggaaacaaataatggagttaatcaaacatggttgtcttgttggcatctacaagctgcagccatttccattggagtagatgcgatcttttattataacaagaatggatttttgtttactttccgatctttttgtatcctagtttagtcctatctttcagtctttactcataagtggtattgcaaagtggcagatgaatatcacatttaacaagctataagaaaacaaagacagaatctggaactaatctttattttcttctctactatgctttggtgttccttgaatcaactttgagacttagaaagtgcactggaacgttaagtgaccacatgcactagtattttgacgtgtcaaaatttgataattaaaattttgtgagatagggttcttcggtttattctaccttttgctgtttgtgaaccagttgctcatgctatgattaaatttcttaaactacatttctgatatttaacatgtcaatgggtagggagaccatgtggcactgctgtcagcctttgcggagatggggcttaagctgcgggttgacatgcctgagcaggctatggagatcgctacagtattttttcggcagtccactacagcaaatgaagcaaaggtaggaggctaccactactgtaatctgtatccctcctcttgtattaatttggaagtttggattaactgtttggttatgacttttctttaggagaacataaagacattgaatgaccaaagagaacgaaatgtcaaggcacttcaagaaaagatgaaaatgaataaaaaggaggttcaacgtttcaatccagtgagtaggcatgccttttacttcatatgtgtttagtttgtcaaccaagaaataggtgttacatgaacattttctcgcctttaggttgatgctttccctggtgatgcaattatattcatgagggttttgaatcttcttagaggtatgtttttcattctttcctttgaaatatccagtatcatggtaacatgctctctattatctgcacttatgcagggctatcagcatcactaaatgttaggatagtttatctagacatcatgaggccatttgctgaatcaactttgctagggtgagatgcctgtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtaggagtatgacacgtgggcccacagctaacagtcagtggatttatgactcacctgttaactcagaggtggagtctaaactgcggaaccttctgcttgagttgggaagcaacaaaattttaggaatacaagtaggttgataatctcatgcgattcatttacatgctatgactttgcttcattggtgccttacaaatcttccttttaccaggtttgtgcttataaagatggaaaggtcataatagataccgctgctggtacgttagggaagtatgatccacgtcctgttcaacctgattctctctttccagttttttcagtgacaaagggtatcactgctggcatggtgcattggcttgttgacaaagggtgagtgcttaatcacaatgccaagttttttttttcttaacatgctagtgtaaatatgtttgcaggccgtcgtattacagtacattatactacctcagattccaaataagtcgtttagacttatgcacaagaattaagaaaacaacagaactgactattttaccctacacttatactacatgaaagatatgaatcatttatttgttgagagagctagcatttatttgccaaggtcaagcatggaagagaagatgaagaagtggctagaagttccaaaacgacttatatttagaatacctcatcttagtagcttactagtgtatcaaaaataatatttggcctaacagtaacgagcatggtagtatgccaccctgtttaagtaggcctcctcttgatctactaacattctaacaaaataaagatattccatctttatatacatggcaaagtcactcacatgcgcaaacaacttttattctgaagcatcaaattgttgtaccgtatttctgtgagtctatgttgaacaataaaaatggacatggagaatgggtgccagtgttcccatgattaggctgaaccatgttagtgcaggtggcaatccttcacaattatgacatgtgagtcactgttgaaacataaaatttagattggtgcagtgtagtttcctgcagttgcatccacgttatccaggtcacaatatttcttgatattatctacattctagtgcttaaaaagtataaagcatcagattcttgtataaagcaagcaactcctctaaatctctaacagtgatggtactacagagaacattgagcatcttttccctgctaccttaggcttttatgtgcattgcaatccattagtgacaggctgagaaaggcctggggtcttctggctagcaccacaagatgtgggctagccgacccaggttcaagcctcacccctcttgataaattttgatatgagaatctttcctctcatatccagtgtttttttattattagtgacaggctgacagcatactgttatctttcaggaagttgaagtatgaggagactgttgccaatatatggccaaaattcggaactaacaaaaaagagctaataaaggtactagaacttctttttttgttgtttgttgaaacactgtttcttgggattaacagactctgatttgcaattttctactaaaggttcatcatcttctgaatcatacatctggtttacataatgcattgggagatgtgatgaagagtgatccgttgttggtatgtgactgggaagagatgctgcaccagattaccaagtgtacgccggaaacagaaccgggttctgaacaaatgtatcactacttatcctttggttggctgtgtggtggaatcatagaggtatgtctctcccgagcatcacatacaccgagttcatttattttcaatgggagtactgaacctttttaactggatcagtggatctttatggcttcacatagttatactaatttttaatctggttatgggcttaattaaatgcacagcccaccaagttatatttttttggttatgggctattggcaaagtagaggtaaataactgaaaacaacacgtgtttgtatgtcactgttctgtgtgaacttaatttcatgaatcctaacgctgatatttggtgataatagcatgcgtccggaaagaagcttcaagaggtcctagaagaggccattgttcatcctcttcacattaacggggagctatatattggcattcctccaggtataactaacaaaacttcccagtttagctttcaacaaaataggtgtacgcattgatataatgatggatattttttttttctacaaatccataaacatattaaccttttcgagacgtgttcatgtcatataagtttgatgagtgaaaaaattgcgctagatacttaccttttttttgcggggtgctatattcttgctattattactgttccaaagattatttgaaaagagactacaatgcatatgtgaagtacagtcatgagttcgatgcttgtccaaagaacgcattttctctgtctctggcttgttttgacatgttccataaacatactcacccacgcttttggagatgtgttccataggtttgatgagtgaaattgctgctatattcttaccgttgtagataatatcctacatgtgaatatgtgatgttcatcgattttccgcccttgtcaggtgtcgaatctcgccttgcggcactgacagtcgacatggaggagctcgagaagctgtcaggattcagagcaggaccagacgtcccacaggagctgctcagcaatgtcgcccagatggccaccggcctacctgtcctcttcaacacgctcaacatccgccgcgccatcctccccgctgccaatggccactgctcggcgcgcgctctggctcgatactacgccgcgctgggggcaggcggcgccattcctccgccgcactccggtggtggctccaagccgccactcggcagccatgtccacacccccaagttccccaccatgccgtccaagaagaagaagaagggaggttcgaagaatgatgtcggcgtcgctgacaaggacgggtacacccagctccgcaccagcgacggcagcgacgaggggtcgacggtgtcagcggtggtggccgggaacggcagtggcagcggcagcagcatgttcgtcgacggcggcaccaagatgctcgacgcgttcatgggcgtcggcgacttctccggcatgatccacccgaacggcaagttcgggctcgggttcaggaggtacggctatggcgccggcgctggcgagaaggtggcgacgacgacgttcgggcactccgggatgggcgggtcgacggggttctgcgacgtggagcacgggctggccatggccgtgacggtgaacaagatgtcgctgggcggcgtgacgcggcgcgtggtccggctggtgtgcgaggagctgggcgtgccggtgcccgacgagttctccgtcgccggcgacaagggccccgacatggtgctcaacctcgcgccgccggagtagcaccaacctgccaggccactactactgacatttcatcatacactttgatacatatacacatgtagctaggtaagagtaaactcatgatgatataacaaaatgaggggaaaaattaatgttctttccgggtatacgtattagtacaatatagtagtacaaatttatgccatttggatgtggcttcgtcatatatactccaaattatacatgtatacaagatttttgtttcatttttcctgtttacatttgcaactgtgaggtgccaagtgatgccatgttggaaaattcgaatatgctgttgt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065018.1 RefSeq:Os06g0701300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 6]]
[[Category:Chromosome 6]]

Os07g0227800

2014-06-26T09:13:35Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

''OsABC1-9'' contains 13 extrons and is located in chromosome 7, and this gene encodes a proteins with 793 amino acids.
==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0227800|
Description = Conserved hypothetical protein|
Version = NM_001065754.2 GI:297606926 GeneID:4342761|
Length = 5176 bp|
Definition = Oryza sativa Japonica Group Os07g0227800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:7184984..7190159|
CDS = 7188636..7188824,7189131..7189273,7189683..7189818,7189954..7190058|
GCID = <gbrowseImage1>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataa</cdnaseq>|
AA = <aaseq>MAAAAARGAAAARSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSP PRVGRRIRASREKGRRVGIRVFARYSQAQDFSTRLQDRAGELPKLVEDLLQTSISTGP RGAFRFAQGIQAVLGVGGEWLNDFSKTANTSAGIPAQMQLGLLSPLYLRRLFERMGAT YIKLGQVRTCSYFAVYAIINYKMCPSQKKK</aaseq>|
DNA = <dnaseqindica>1336..1524#887..1029#342..477#102..206#ctctctctctctctctcttcacgcttcccacgcgcgacacgaggttggagacgcgtcccgtgacgtcatcgtcgtccccgactccggcgagccccgcacccatggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtcagtcactccgcccccgtctcatttcctcctcgatctctagctccctcctcttgggagtaggcgggattgggagctacctacctcgtgcttgattgaggtggtaattcggtcaactactgattggggttgcaggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaaggtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaacaagcgactgtttctcattaggcaggatacgggtgatgatgtaatatgaagcgagaatttccggtgtggattttcacgagtcgtgagtttgttttctgttcatcgcagtagcatagagaatgttatgtattttgggattcgggtgggtaaaatgtgtgtctcttcagattaatgtactccttattaacattcctcacaaaaataagtagttatgaacaatcttgggatagctagatcacagatgcattgaatattaagtttgtttgttcttcgcaaaatcatcccatgtctttgatttcgttcaaatgcagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaaggttatttcttgtttgtgttattcatctattttgtctaaaaacttgatcttagaatttctgagaactgaaacaatggaagcagctgtagactgaactactaatgaactactgatgtgttgagttggctgaggttgtatgggagaatattggggatttagggctagtctagatgtggatttttcatctatgtagaaaagaggaggttaaatttttgttggtgcacaatgaccaggtttatctaagatattttttttattgataactttggtttcagaagcgtaatatcctgctgttaatatgatgcagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataaactacatgtgtatgtgttccttaattaatagattgtcttgaatttcttaatcttctgtaccttttgaaagaaatgccagaattcttcattttactttgtatatgtagcaaacagaaacaaagaccactaatatatctttcagcaacccagacaatagtcagttgcttacttgtcactagacaggtagagtaacctatctttagagtggtcctttgggatgggcaaagggagaggagttaaaatagttattcagtttaatagtcatatattttatgattatttcaacctggatagtcaactgactgtggtggtgcagttcgtagcttctgcaccaactttgtttcctgcagagtatgtcgaggaattccagaactgttttgaccgtgcaccacctgttccatatagtgagattgagtcaatattgcgtgaggagttgcaacagccgttggatagtgtatatgaatacattgatccagttccaatagcttctgcgtcaatagcacaggtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccaggttcatggggcaaggttgaagagctctcagaaggatgtggttatcaaggtcctcaagcctggtattgaagacactttggtggctgacctgaattttatctatgttgttgcacgtattttggaatttctaaaccctgaactacagaggacatcactggtgagttatcgcctaatgagtctttcactggacaggatttttttcattcattgaacaatcactggtcctggtggttctcggagcgcaggaaaccaaaatttactgctttctttagtataatcagaagccagaaggtcaaaatatatttttgtttgattcctgtatgcagcaagcaatgcatgccatgaaattgctcccatgaccatgaggatatgtttttcttttggtagttgaggcaagatcattgaacttttcacagttgatttacatgtatttttcaattctagccactgtgctagagttggcacaattaggtgcagaaacttttaatatctatatccttaaaatttattagttggattgaaggcaccacaatattcctaagatcagaaaaaatatgagtttaaaagattaacagaaaattcagaaaattctcccaataatcaagagagaaagaaatgtcttgccacttgcgtgttgttttgatggacctagattgtaacctagtagattaactatagttgttatagttgtgtaacaaatacaactgcacctctaatcattgatataagagctttatagcaaatggaattattgttaaatgtaatcatgcaactgcatggatatcccactaaaaaattgaatatcgaataaggaatatttcatggtggagcacaatatatcttgagcttgtgacatgaggagttgactatatatattattcacgtactataactaaaaaggaaaaaaaacaattagttcacacaaccagaaacaaatgaatactttatactttgtagttcatatatgtggaagtagagacagcatatagcaatcatgaaattttctgtatacttggttatccaaattttgtggtatcacaagttatagaagaatataataagagatgtccttatgctcagaattttatattataggtaggaattgtcaaggatataaaggaatctatgcttgaagaagttgatttcaggaaagaggctatgaatattgaggcttttcagaggtacatcgatgcaatgggatttgacaggcaggccaaagccccttttgtgtatcgccactgtagcacaaagcgtgtcctaactatggaaagattgtacggtgttccactcactgaccttgattctataaggtctcttgttcctgatcctgagctgactttagtcactgcacttaatgtctggtatgctccatgcgtccttgtgattccatacatcatatatttgggtatttctgccattcattgccttattcaatcctcagaataggcatgttgacatatgtgcaaaatgtgcaggtttggaagcttgatttcatgtgaatccttccatgcagatgtgcatgcaggaaatttatggttgctccgagatggacgtgttggatttcttgattttggtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacaggaattgttggccggatatcgccaaggacctgggctgcaatggaggtctttttggcttcatttgcaactgacgattataatgctatggcatcagccctttctgaaatgggtgctacagggaatgatataaatgttaatgaatttgcaaaggacttggaaaaaatattctcatcaatacaggtaatatttcccaaaatagtaggttatttgatgtcatgaaggcctggttatcccgtgaacatggtgacccaatttcgactgttgaagtgccaaaaatgatgccagggtgaaacctgggctgtgtttcacaccaaaattggaagtttggttaaaattggaacgatgtgacggaaaagttggaagtttgtgtgtgtaggaaagtattgatgtgatggaaaagttggaagtttgaagaaaaactttggaactaaacacggcgctggtctggcagtagtaaaatgctgaatgcaagcaaaagtggcttatggacaggaatttttgtggctactggctagtcaaatttggatatcgttctttagttagtgttttaccacttatctcgtggttaattttcaattgcattctcatttgtgcgcaggatttggatactgaagtcatagttgcaacagcaagaactcctgatgctacagcagtatcggctaatgttgtcgttgacgagagacagatgaatgcattgtttcttgatctggtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccaggtgagggtcagcgagtcgtatggattgaaatttcctcgcgaattcgctcttctgatgaagcagcttctgtattttgatcgctacacaagattgttggctcccagcatgaacatgctgcgagatgagagggttaacattagctcccgccaacaggccagaagagtagatcgtttccagtgaccgatgcttgtgatacactgacaagtagtacgtaacaagctcgtgtaagtgtaacctactaactgtatatattttcaccagatcaacataggaatgaaccgcagtgcagcggccaaggaaaatttggacgagtataactggacattttcatagtagcaagtcgctctgtaaaaggtgtacgttaagatggaagtaaaatgtagagaaaatagaactgccggggccgctgggctgactcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065754.2 RefSeq:Os07g0227800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0227800

2014-06-26T09:10:35Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0227800|
Description = Conserved hypothetical protein|
Version = NM_001065754.2 GI:297606926 GeneID:4342761|
Length = 5176 bp|
Definition = Oryza sativa Japonica Group Os07g0227800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:7184984..7190159|
CDS = 7188636..7188824,7189131..7189273,7189683..7189818,7189954..7190058|
GCID = <gbrowseImage1>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataa</cdnaseq>|
AA = <aaseq>MAAAAARGAAAARSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSP PRVGRRIRASREKGRRVGIRVFARYSQAQDFSTRLQDRAGELPKLVEDLLQTSISTGP RGAFRFAQGIQAVLGVGGEWLNDFSKTANTSAGIPAQMQLGLLSPLYLRRLFERMGAT YIKLGQVRTCSYFAVYAIINYKMCPSQKKK</aaseq>|
DNA = <dnaseqindica>1336..1524#887..1029#342..477#102..206#ctctctctctctctctcttcacgcttcccacgcgcgacacgaggttggagacgcgtcccgtgacgtcatcgtcgtccccgactccggcgagccccgcacccatggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtcagtcactccgcccccgtctcatttcctcctcgatctctagctccctcctcttgggagtaggcgggattgggagctacctacctcgtgcttgattgaggtggtaattcggtcaactactgattggggttgcaggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaaggtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaacaagcgactgtttctcattaggcaggatacgggtgatgatgtaatatgaagcgagaatttccggtgtggattttcacgagtcgtgagtttgttttctgttcatcgcagtagcatagagaatgttatgtattttgggattcgggtgggtaaaatgtgtgtctcttcagattaatgtactccttattaacattcctcacaaaaataagtagttatgaacaatcttgggatagctagatcacagatgcattgaatattaagtttgtttgttcttcgcaaaatcatcccatgtctttgatttcgttcaaatgcagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaaggttatttcttgtttgtgttattcatctattttgtctaaaaacttgatcttagaatttctgagaactgaaacaatggaagcagctgtagactgaactactaatgaactactgatgtgttgagttggctgaggttgtatgggagaatattggggatttagggctagtctagatgtggatttttcatctatgtagaaaagaggaggttaaatttttgttggtgcacaatgaccaggtttatctaagatattttttttattgataactttggtttcagaagcgtaatatcctgctgttaatatgatgcagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataaactacatgtgtatgtgttccttaattaatagattgtcttgaatttcttaatcttctgtaccttttgaaagaaatgccagaattcttcattttactttgtatatgtagcaaacagaaacaaagaccactaatatatctttcagcaacccagacaatagtcagttgcttacttgtcactagacaggtagagtaacctatctttagagtggtcctttgggatgggcaaagggagaggagttaaaatagttattcagtttaatagtcatatattttatgattatttcaacctggatagtcaactgactgtggtggtgcagttcgtagcttctgcaccaactttgtttcctgcagagtatgtcgaggaattccagaactgttttgaccgtgcaccacctgttccatatagtgagattgagtcaatattgcgtgaggagttgcaacagccgttggatagtgtatatgaatacattgatccagttccaatagcttctgcgtcaatagcacaggtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccaggttcatggggcaaggttgaagagctctcagaaggatgtggttatcaaggtcctcaagcctggtattgaagacactttggtggctgacctgaattttatctatgttgttgcacgtattttggaatttctaaaccctgaactacagaggacatcactggtgagttatcgcctaatgagtctttcactggacaggatttttttcattcattgaacaatcactggtcctggtggttctcggagcgcaggaaaccaaaatttactgctttctttagtataatcagaagccagaaggtcaaaatatatttttgtttgattcctgtatgcagcaagcaatgcatgccatgaaattgctcccatgaccatgaggatatgtttttcttttggtagttgaggcaagatcattgaacttttcacagttgatttacatgtatttttcaattctagccactgtgctagagttggcacaattaggtgcagaaacttttaatatctatatccttaaaatttattagttggattgaaggcaccacaatattcctaagatcagaaaaaatatgagtttaaaagattaacagaaaattcagaaaattctcccaataatcaagagagaaagaaatgtcttgccacttgcgtgttgttttgatggacctagattgtaacctagtagattaactatagttgttatagttgtgtaacaaatacaactgcacctctaatcattgatataagagctttatagcaaatggaattattgttaaatgtaatcatgcaactgcatggatatcccactaaaaaattgaatatcgaataaggaatatttcatggtggagcacaatatatcttgagcttgtgacatgaggagttgactatatatattattcacgtactataactaaaaaggaaaaaaaacaattagttcacacaaccagaaacaaatgaatactttatactttgtagttcatatatgtggaagtagagacagcatatagcaatcatgaaattttctgtatacttggttatccaaattttgtggtatcacaagttatagaagaatataataagagatgtccttatgctcagaattttatattataggtaggaattgtcaaggatataaaggaatctatgcttgaagaagttgatttcaggaaagaggctatgaatattgaggcttttcagaggtacatcgatgcaatgggatttgacaggcaggccaaagccccttttgtgtatcgccactgtagcacaaagcgtgtcctaactatggaaagattgtacggtgttccactcactgaccttgattctataaggtctcttgttcctgatcctgagctgactttagtcactgcacttaatgtctggtatgctccatgcgtccttgtgattccatacatcatatatttgggtatttctgccattcattgccttattcaatcctcagaataggcatgttgacatatgtgcaaaatgtgcaggtttggaagcttgatttcatgtgaatccttccatgcagatgtgcatgcaggaaatttatggttgctccgagatggacgtgttggatttcttgattttggtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacaggaattgttggccggatatcgccaaggacctgggctgcaatggaggtctttttggcttcatttgcaactgacgattataatgctatggcatcagccctttctgaaatgggtgctacagggaatgatataaatgttaatgaatttgcaaaggacttggaaaaaatattctcatcaatacaggtaatatttcccaaaatagtaggttatttgatgtcatgaaggcctggttatcccgtgaacatggtgacccaatttcgactgttgaagtgccaaaaatgatgccagggtgaaacctgggctgtgtttcacaccaaaattggaagtttggttaaaattggaacgatgtgacggaaaagttggaagtttgtgtgtgtaggaaagtattgatgtgatggaaaagttggaagtttgaagaaaaactttggaactaaacacggcgctggtctggcagtagtaaaatgctgaatgcaagcaaaagtggcttatggacaggaatttttgtggctactggctagtcaaatttggatatcgttctttagttagtgttttaccacttatctcgtggttaattttcaattgcattctcatttgtgcgcaggatttggatactgaagtcatagttgcaacagcaagaactcctgatgctacagcagtatcggctaatgttgtcgttgacgagagacagatgaatgcattgtttcttgatctggtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccaggtgagggtcagcgagtcgtatggattgaaatttcctcgcgaattcgctcttctgatgaagcagcttctgtattttgatcgctacacaagattgttggctcccagcatgaacatgctgcgagatgagagggttaacattagctcccgccaacaggccagaagagtagatcgtttccagtgaccgatgcttgtgatacactgacaagtagtacgtaacaagctcgtgtaagtgtaacctactaactgtatatattttcaccagatcaacataggaatgaaccgcagtgcagcggccaaggaaaatttggacgagtataactggacattttcatagtagcaagtcgctctgtaaaaggtgtacgttaagatggaagtaaaatgtagagaaaatagaactgccggggccgctgggctgactcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065754.2 RefSeq:Os07g0227800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0227800

2014-06-26T09:09:54Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0227800|
Description = Conserved hypothetical protein|
Version = NM_001065754.2 GI:297606926 GeneID:4342761|
Length = 5176 bp|
Definition = Oryza sativa Japonica Group Os07g0227800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:7184984..7190159|
CDS = 7188636..7188824,7189131..7189273,7189683..7189818,7189954..7190058|
GCID = <gbrowseImage1>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataa</cdnaseq>|
AA = <aaseq>MAAAAARGAAAARSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSP PRVGRRIRASREKGRRVGIRVFARYSQAQDFSTRLQDRAGELPKLVEDLLQTSISTGP RGAFRFAQGIQAVLGVGGEWLNDFSKTANTSAGIPAQMQLGLLSPLYLRRLFERMGAT YIKLGQVRTCSYFAVYAIINYKMCPSQKKK</aaseq>|
DNA = <dnaseqindica>1336..1524#887..1029#342..477#102..206#ctctctctctctctctcttcacgcttcccacgcgcgacacgaggttggagacgcgtcccgtgacgtcatcgtcgtccccgactccggcgagccccgcacccatggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtcagtcactccgcccccgtctcatttcctcctcgatctctagctccctcctcttgggagtaggcgggattgggagctacctacctcgtgcttgattgaggtggtaattcggtcaactactgattggggttgcaggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaaggtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaacaagcgactgtttctcattaggcaggatacgggtgatgatgtaatatgaagcgagaatttccggtgtggattttcacgagtcgtgagtttgttttctgttcatcgcagtagcatagagaatgttatgtattttgggattcgggtgggtaaaatgtgtgtctcttcagattaatgtactccttattaacattcctcacaaaaataagtagttatgaacaatcttgggatagctagatcacagatgcattgaatattaagtttgtttgttcttcgcaaaatcatcccatgtctttgatttcgttcaaatgcagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaaggttatttcttgtttgtgttattcatctattttgtctaaaaacttgatcttagaatttctgagaactgaaacaatggaagcagctgtagactgaactactaatgaactactgatgtgttgagttggctgaggttgtatgggagaatattggggatttagggctagtctagatgtggatttttcatctatgtagaaaagaggaggttaaatttttgttggtgcacaatgaccaggtttatctaagatattttttttattgataactttggtttcagaagcgtaatatcctgctgttaatatgatgcagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataaactacatgtgtatgtgttccttaattaatagattgtcttgaatttcttaatcttctgtaccttttgaaagaaatgccagaattcttcattttactttgtatatgtagcaaacagaaacaaagaccactaatatatctttcagcaacccagacaatagtcagttgcttacttgtcactagacaggtagagtaacctatctttagagtggtcctttgggatgggcaaagggagaggagttaaaatagttattcagtttaatagtcatatattttatgattatttcaacctggatagtcaactgactgtggtggtgcagttcgtagcttctgcaccaactttgtttcctgcagagtatgtcgaggaattccagaactgttttgaccgtgcaccacctgttccatatagtgagattgagtcaatattgcgtgaggagttgcaacagccgttggatagtgtatatgaatacattgatccagttccaatagcttctgcgtcaatagcacaggtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccaggttcatggggcaaggttgaagagctctcagaaggatgtggttatcaaggtcctcaagcctggtattgaagacactttggtggctgacctgaattttatctatgttgttgcacgtattttggaatttctaaaccctgaactacagaggacatcactggtgagttatcgcctaatgagtctttcactggacaggatttttttcattcattgaacaatcactggtcctggtggttctcggagcgcaggaaaccaaaatttactgctttctttagtataatcagaagccagaaggtcaaaatatatttttgtttgattcctgtatgcagcaagcaatgcatgccatgaaattgctcccatgaccatgaggatatgtttttcttttggtagttgaggcaagatcattgaacttttcacagttgatttacatgtatttttcaattctagccactgtgctagagttggcacaattaggtgcagaaacttttaatatctatatccttaaaatttattagttggattgaaggcaccacaatattcctaagatcagaaaaaatatgagtttaaaagattaacagaaaattcagaaaattctcccaataatcaagagagaaagaaatgtcttgccacttgcgtgttgttttgatggacctagattgtaacctagtagattaactatagttgttatagttgtgtaacaaatacaactgcacctctaatcattgatataagagctttatagcaaatggaattattgttaaatgtaatcatgcaactgcatggatatcccactaaaaaattgaatatcgaataaggaatatttcatggtggagcacaatatatcttgagcttgtgacatgaggagttgactatatatattattcacgtactataactaaaaaggaaaaaaaacaattagttcacacaaccagaaacaaatgaatactttatactttgtagttcatatatgtggaagtagagacagcatatagcaatcatgaaattttctgtatacttggttatccaaattttgtggtatcacaagttatagaagaatataataagagatgtccttatgctcagaattttatattataggtaggaattgtcaaggatataaaggaatctatgcttgaagaagttgatttcaggaaagaggctatgaatattgaggcttttcagaggtacatcgatgcaatgggatttgacaggcaggccaaagccccttttgtgtatcgccactgtagcacaaagcgtgtcctaactatggaaagattgtacggtgttccactcactgaccttgattctataaggtctcttgttcctgatcctgagctgactttagtcactgcacttaatgtctggtatgctccatgcgtccttgtgattccatacatcatatatttgggtatttctgccattcattgccttattcaatcctcagaataggcatgttgacatatgtgcaaaatgtgcaggtttggaagcttgatttcatgtgaatccttccatgcagatgtgcatgcaggaaatttatggttgctccgagatggacgtgttggatttcttgattttggtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacaggaattgttggccggatatcgccaaggacctgggctgcaatggaggtctttttggcttcatttgcaactgacgattataatgctatggcatcagccctttctgaaatgggtgctacagggaatgatataaatgttaatgaatttgcaaaggacttggaaaaaatattctcatcaatacaggtaatatttcccaaaatagtaggttatttgatgtcatgaaggcctggttatcccgtgaacatggtgacccaatttcgactgttgaagtgccaaaaatgatgccagggtgaaacctgggctgtgtttcacaccaaaattggaagtttggttaaaattggaacgatgtgacggaaaagttggaagtttgtgtgtgtaggaaagtattgatgtgatggaaaagttggaagtttgaagaaaaactttggaactaaacacggcgctggtctggcagtagtaaaatgctgaatgcaagcaaaagtggcttatggacaggaatttttgtggctactggctagtcaaatttggatatcgttctttagttagtgttttaccacttatctcgtggttaattttcaattgcattctcatttgtgcgcaggatttggatactgaagtcatagttgcaacagcaagaactcctgatgctacagcagtatcggctaatgttgtcgttgacgagagacagatgaatgcattgtttcttgatctggtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccaggtgagggtcagcgagtcgtatggattgaaatttcctcgcgaattcgctcttctgatgaagcagcttctgtattttgatcgctacacaagattgttggctcccagcatgaacatgctgcgagatgagagggttaacattagctcccgccaacaggccagaagagtagatcgtttccagtgaccgatgcttgtgatacactgacaagtagtacgtaacaagctcgtgtaagtgtaacctactaactgtatatattttcaccagatcaacataggaatgaaccgcagtgcagcggccaaggaaaatttggacgagtataactggacattttcatagtagcaagtcgctctgtaaaaggtgtacgttaagatggaagtaaaatgtagagaaaatagaactgccggggccgctgggctgactcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065754.2 RefSeq:Os07g0227800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0227800

2014-06-26T09:08:49Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins (Fig1).
[[File:motif10.jpg|middle|thumb|430px|'''Fig.1'' Motif composition of rice ABC1 proteins.(from reference) <ref name="ref4" />.]]
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0227800|
Description = Conserved hypothetical protein|
Version = NM_001065754.2 GI:297606926 GeneID:4342761|
Length = 5176 bp|
Definition = Oryza sativa Japonica Group Os07g0227800, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:7184984..7190159|
CDS = 7188636..7188824,7189131..7189273,7189683..7189818,7189954..7190058|
GCID = <gbrowseImage1>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:7184984..7190159
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataa</cdnaseq>|
AA = <aaseq>MAAAAARGAAAARSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSP PRVGRRIRASREKGRRVGIRVFARYSQAQDFSTRLQDRAGELPKLVEDLLQTSISTGP RGAFRFAQGIQAVLGVGGEWLNDFSKTANTSAGIPAQMQLGLLSPLYLRRLFERMGAT YIKLGQVRTCSYFAVYAIINYKMCPSQKKK</aaseq>|
DNA = <dnaseqindica>1336..1524#887..1029#342..477#102..206#ctctctctctctctctcttcacgcttcccacgcgcgacacgaggttggagacgcgtcccgtgacgtcatcgtcgtccccgactccggcgagccccgcacccatggcggcggcggccgcgaggggcgccgccgcggcccgctccccgctcgtcctccaccgccacccccaccccgcgcaccaccgccgcctccgcctcctccccctggtcagtcactccgcccccgtctcatttcctcctcgatctctagctccctcctcttgggagtaggcgggattgggagctacctacctcgtgcttgattgaggtggtaattcggtcaactactgattggggttgcaggtggcgggcggcgggggaggctcgcccccgcgtgtggggaggaggatcagggccagccgggagaaggggcggcgggtcgggattagggttttcgcgaggtacagccaggcccaggacttctccactcgcctccaaggtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaacaagcgactgtttctcattaggcaggatacgggtgatgatgtaatatgaagcgagaatttccggtgtggattttcacgagtcgtgagtttgttttctgttcatcgcagtagcatagagaatgttatgtattttgggattcgggtgggtaaaatgtgtgtctcttcagattaatgtactccttattaacattcctcacaaaaataagtagttatgaacaatcttgggatagctagatcacagatgcattgaatattaagtttgtttgttcttcgcaaaatcatcccatgtctttgatttcgttcaaatgcagatagagctggcgaattgcctaagttggttgaggaccttctacagacatcaattagcacagggccacgaggtgcttttaggtttgcccaagggatccaagctgtccttggggttggtggggagtggctaaatgacttctcaaaggttatttcttgtttgtgttattcatctattttgtctaaaaacttgatcttagaatttctgagaactgaaacaatggaagcagctgtagactgaactactaatgaactactgatgtgttgagttggctgaggttgtatgggagaatattggggatttagggctagtctagatgtggatttttcatctatgtagaaaagaggaggttaaatttttgttggtgcacaatgaccaggtttatctaagatattttttttattgataactttggtttcagaagcgtaatatcctgctgttaatatgatgcagacagccaacacatcagcaggaataccagctcagatgcagctgggtttgctttctcctctttatcttagaaggctttttgagcgcatgggtgcaacttatatcaagctaggtcaggtaaggacatgttcatactttgcggtttatgctatcatcaactacaaaatgtgtccatctcaaaagaaaaaataaactacatgtgtatgtgttccttaattaatagattgtcttgaatttcttaatcttctgtaccttttgaaagaaatgccagaattcttcattttactttgtatatgtagcaaacagaaacaaagaccactaatatatctttcagcaacccagacaatagtcagttgcttacttgtcactagacaggtagagtaacctatctttagagtggtcctttgggatgggcaaagggagaggagttaaaatagttattcagtttaatagtcatatattttatgattatttcaacctggatagtcaactgactgtggtggtgcagttcgtagcttctgcaccaactttgtttcctgcagagtatgtcgaggaattccagaactgttttgaccgtgcaccacctgttccatatagtgagattgagtcaatattgcgtgaggagttgcaacagccgttggatagtgtatatgaatacattgatccagttccaatagcttctgcgtcaatagcacaggtttctgttgagaccatcagaagttctggactatttgttgtctggagctaaagcactgatataactttattcttatccaggttcatggggcaaggttgaagagctctcagaaggatgtggttatcaaggtcctcaagcctggtattgaagacactttggtggctgacctgaattttatctatgttgttgcacgtattttggaatttctaaaccctgaactacagaggacatcactggtgagttatcgcctaatgagtctttcactggacaggatttttttcattcattgaacaatcactggtcctggtggttctcggagcgcaggaaaccaaaatttactgctttctttagtataatcagaagccagaaggtcaaaatatatttttgtttgattcctgtatgcagcaagcaatgcatgccatgaaattgctcccatgaccatgaggatatgtttttcttttggtagttgaggcaagatcattgaacttttcacagttgatttacatgtatttttcaattctagccactgtgctagagttggcacaattaggtgcagaaacttttaatatctatatccttaaaatttattagttggattgaaggcaccacaatattcctaagatcagaaaaaatatgagtttaaaagattaacagaaaattcagaaaattctcccaataatcaagagagaaagaaatgtcttgccacttgcgtgttgttttgatggacctagattgtaacctagtagattaactatagttgttatagttgtgtaacaaatacaactgcacctctaatcattgatataagagctttatagcaaatggaattattgttaaatgtaatcatgcaactgcatggatatcccactaaaaaattgaatatcgaataaggaatatttcatggtggagcacaatatatcttgagcttgtgacatgaggagttgactatatatattattcacgtactataactaaaaaggaaaaaaaacaattagttcacacaaccagaaacaaatgaatactttatactttgtagttcatatatgtggaagtagagacagcatatagcaatcatgaaattttctgtatacttggttatccaaattttgtggtatcacaagttatagaagaatataataagagatgtccttatgctcagaattttatattataggtaggaattgtcaaggatataaaggaatctatgcttgaagaagttgatttcaggaaagaggctatgaatattgaggcttttcagaggtacatcgatgcaatgggatttgacaggcaggccaaagccccttttgtgtatcgccactgtagcacaaagcgtgtcctaactatggaaagattgtacggtgttccactcactgaccttgattctataaggtctcttgttcctgatcctgagctgactttagtcactgcacttaatgtctggtatgctccatgcgtccttgtgattccatacatcatatatttgggtatttctgccattcattgccttattcaatcctcagaataggcatgttgacatatgtgcaaaatgtgcaggtttggaagcttgatttcatgtgaatccttccatgcagatgtgcatgcaggaaatttatggttgctccgagatggacgtgttggatttcttgattttggtatgtaacatattctccaatctccacggtggcacggttgctctatatctcattaggcaatttaggatgcaccttgtatttgctaaaaaaggaaatattctggccttttaattcttacattatctattagtcaaaacacaaagtggtcaagaaagtttatcactattggttaataccatttcacaggaattgttggccggatatcgccaaggacctgggctgcaatggaggtctttttggcttcatttgcaactgacgattataatgctatggcatcagccctttctgaaatgggtgctacagggaatgatataaatgttaatgaatttgcaaaggacttggaaaaaatattctcatcaatacaggtaatatttcccaaaatagtaggttatttgatgtcatgaaggcctggttatcccgtgaacatggtgacccaatttcgactgttgaagtgccaaaaatgatgccagggtgaaacctgggctgtgtttcacaccaaaattggaagtttggttaaaattggaacgatgtgacggaaaagttggaagtttgtgtgtgtaggaaagtattgatgtgatggaaaagttggaagtttgaagaaaaactttggaactaaacacggcgctggtctggcagtagtaaaatgctgaatgcaagcaaaagtggcttatggacaggaatttttgtggctactggctagtcaaatttggatatcgttctttagttagtgttttaccacttatctcgtggttaattttcaattgcattctcatttgtgcgcaggatttggatactgaagtcatagttgcaacagcaagaactcctgatgctacagcagtatcggctaatgttgtcgttgacgagagacagatgaatgcattgtttcttgatctggtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccaggtgagggtcagcgagtcgtatggattgaaatttcctcgcgaattcgctcttctgatgaagcagcttctgtattttgatcgctacacaagattgttggctcccagcatgaacatgctgcgagatgagagggttaacattagctcccgccaacaggccagaagagtagatcgtttccagtgaccgatgcttgtgatacactgacaagtagtacgtaacaagctcgtgtaagtgtaacctactaactgtatatattttcaccagatcaacataggaatgaaccgcagtgcagcggccaaggaaaatttggacgagtataactggacattttcatagtagcaagtcgctctgtaaaaggtgtacgttaagatggaagtaaaatgtagagaaaatagaactgccggggccgctgggctgactcc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065754.2 RefSeq:Os07g0227800]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

File:Motif10.jpg

2014-06-26T09:06:03Z

Littlescrew: Motif composition of rice ABC1 proteins.

Motif composition of rice ABC1 proteins.

Os07g0459200

2014-06-26T08:49:50Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-10''is located in chromosome 7 which contains 7 extrons, and encodes a protein of 623 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0459200|
Description = Similar to Possible kinase|
Version = NM_001188257.1 GI:297725644 GeneID:9271235|
Length = 9562 bp|
Definition = Oryza sativa Japonica Group Os07g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:16673236..16682797|
CDS = 16679417..16679478,16679599..16679734,16680268..16680339,16680714..16680755,16680982..16681225 ,16682519..16682700|
GCID = <gbrowseImage1>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaagttccaggagaccttgatccggttggggcctttttacatcaagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatga</cdnaseq>|
AA = <aaseq>MAGPTSRRLLLLVARRAGHLCRHHHHHHHRDGLVLARSLQAAAA AAASSPPPLPASPPARSFSSAFSSVHGERPSSEYAKIRKESLESQFGRILGSSSRTLF ADRGFGPFLAMYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQA LSTRPDILPNAYCQELSKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAA SLGQVYKVMQLIYTLESLSQSKFRGLE</aaseq>|
DNA = <dnaseqindica>3320..3381#3064..3199#2459..2530#2043..2084#1573..1816#98..279#ctctcttctccctccccaagcaaagcatcggcatctctcctccctaaaaccccacctcccgtctccccggggcggcggagccgatgagatcccggccatggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggaggtaatcgaatcccacaggcgcttgatctctgagccgccaccatcgcgtcgttctccctaggtcgcaaacccgttatctaccgagagcaggtccattttaggttcttatactacatcgaagtaattgtattcttaacaatttgcactaacggggaggagagaagtgggagatacactagcaaaaatgcacaatgacagcactgatttgcggagccattttgtaacgattattgggataatagcagagaactatttttgcttctcacaagttacaactatcaagttttctctgcctgtgcaatcatgtactagccatgcacgcatctgtttcttggttgtgtgatagtttggagtcatcgttgtcaatccattttaatcttacataccatgtactgtattagataacactgcataaatcataataggcgaagcaaacattttgcaccgtaatggtgctgaatttagctattttaaatgtagcaaacttttaaccatatcagctttctggctgattccttctactttctaagctctcttatgtttgcattgtcatacttgtgttttgcctccatgagtacaacttgatacagttcaactcgctaattcaaccagtcgtaagttatgtaaccatccaatcacgtataagtgcaatatgcactgttttacaaagatcttcaacaaatggctacaccgttgtgctcaatatcactatgaatcaatatgtgttctccctggctctatcttaagtctgaactgaaatttcttcatttgggtaaagtatgtttgcctactcatctcaaccttaattaccacccattgtatgaggtagctgtgaggcaaacgttttgtaccttagtggtgctggatttgtctattttaattatccttatgctagaacgatttgtggcttattccttccaacttttaacttatctagcatacttttgttttgcctccattgacataccttgatacagttctattcgcatgttggaccattgtaagttatttaatcatctggtcacttataagtgcatcaacatataaggtattgctcagatctccaataattcttttcataccaatatatccaataatgactatacactgccacgctcaatcatcactctgaagcaaagttttactccctcagcttgtctaagctcagctgaatgttctccatttgataatccaaatgctcatgccatttcaaagttctttttttttcaggaacatcaagttgaataagtgagtagatatattgttcttaggaggtttattttctgttttgtagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaaggtatttcttttctgcctttcttcctactctaagggtgtgttcggctgccctatttcagctgtgatacagccattttgcacagtaatttgtgtcactacaaacagctgtgtggctgtgttgcagcggctggccggctgcaacgtgcagccgaacacaccctaactctctacgagtacttgttatactttgagtttcatgtatctggttttcattttactcatttcagttccaggagaccttgatccggttggggcctttttacatcaaggtaggtcagagcaatgcattttaataaatgaccaacattacaatgtatctttactgtaacagatattcttatgcttattttcactgtttacctttttatggtggatatttccttgttaatgaggagaaatcattaaacataaaattcatgaccatcaaaagcaattaccattgtaccctagtcacattggccttttcaatactcgcatagattcaatgcatttcatcatgacaagttactatgtctatatttggtttttaactggaagaattcattctcaatggtttattttgtcttagatttgatatgttttccttattcactgttgaaagttaccaatctgttcattttccttgtctctttgcatgatgcagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggtagtgctttgttgtgcattttataattttgcttaactgatgggaaacaagtagcatttaccttcaacatacttcatctaattgtttgcaccaactttctgtaagtattgagggatcagggcagagctaggtcccaaaattgaggcataaaaagtgctaaactaagtctaggttccaaaatagacagtactcaaagtctgtttatatgggatttccgcagttagtaatgctctactcaatggaattgaaggcaatcatgttgaagctttaagccgctgtcaaaatttgaattttaaaacttgattttgatgtttttctttgaagtttattttccagcactggcttttaaatcactaaggacacacataaaagttttacccacaaatattttttttgcggcttataatcagcattaggctaggtcaatcaatggcagccgtatggcttataagcacccttaagccgtacattccttttgctttatttatttctttttagaggtgtatgttgacaaatcacaactatctcatcaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaaggttagccatgcctgacaagacattttatctaatgagttggtggctatcttccttaagaccttaagcatctatttcagacctgagttctccaagttgaaatgcattctttgatatttcaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatgactcccttgctgactctagatgcacttttgttccatatgatcggaggacagttgaaacggtttgcaaaggctcgcaaagatttactggtagcagtcaatgagattgtgagcatttaacttctgtttcaattggatataatgatctattcatgctaatccgatactattagattataaccttatgtcctgcttacattttctatggttccatgttaatttaatatgtgttgttctaatgtgtgttctaatgaaagtgaaatactttcctaatactgtatttttctaggttttgttgatgcatgaaaatgtatttttgtggtcaaaataatgtcatagaaaccatgtcaatatctcaatccaaaatttaagttttgtattgtaggactaataatagatggtctcattaagacaactgtaatataatttgtttcagacaatttagttgcaactgccatatactatgtttttccattctagaccacgtttcccatattttggccgttaatatatattgcaatatagtttgcttatagcttttgaaccttctgttcaacaggtcaggcacatgtttgatgagattgattatgttttagagggaaggaatgctgaaagatttgcgagactttattctcatggtgagttcttaatttttattcaatttttgatttttgctacctgctagtgtgggttcctctaaatctatctgacaagcttgctctcctgtttcccatttatctcgaccatcatatccaaaccttttacattcacatttcctagtgctctttcagctcagattgatctctggctctctgctatttattatacaaagcacactgtagggccatcattgtgttttttttcctggcagatttaggtgggaatagctccggagatgggacaagtatcaaagtcccaaaggtctactggaattttacacgtaaatctatattaactctagaatggattgatgggatcaagctcactgatgctgagcgcattggcaaagccaatctgaacaggaaaaggatgatcgatgaggtatcgcagaaatgttatacttactgtatattgtgactaacacaatactatgaagaattcagatttatattaaatcactactttcctctctccacatattttcataacatgagcttgtctgaccatatacattgtacatagacttgcaaattgtgcttgcatttgtttgtaccgtgcaactgttttgttgggcttgtttctgcgtgtttttcagtgtattgtccaggtgtttttcaccattttagcacattttcgtacctcttctgtttttcatggaaggtgtttggtagtcttgcatgtatagtcgtgttcttatttaggcatgctaatatttcaaaacaaattttacagggtctctattgttcattgaggcagcttcttgaagaaggctttttccatgcagacccccatccaggtaatctggttgcaactgaaggtggatcactcgcgtattttgattttggtatgatgggggatattccaaggcactatcgtgtagggcttatacaaatggtaatcattgctcccttttctcatgtgtaaccatatggttctgttggtttttcttcctgatttggtttttgtcggttgctaagaactgtttttgaccggttgcagtgcagtctggtgcatttctgcacagttttgcatcttcaaattttgaattgaaaattcgaaatgactggtaacaaacttcgaacgatttggttaccatcatattgtagagtggaaataggttatatcatggtacaaaataaatattaagaaatgattttcataatgcaaaccatatacaacctggcccatcttctgaacctggccctgttcgtatcttctaaaggtagaggataaagttttggatactcgtggcacgcttttcaaactgctaaatggtgcgtttcgtgcgaaaactttctatatgaaaattgctctaaaatatcagattaatcaatttttcatgtttgtaataattaaaactcaattaatcgcacgttattaccacctcgttttgtgtgaaacacttaatctttatcttcatcttcatcttcaggagattcaaacaccacctcaggctaccttgggtcacggttaaatcacaaataaattgaatagcatgtacagaaacaagtatatatatacataattgcttcctacatgtaccaaatttgaaatttaaattatgtttaaaactactcttctaatttatctcctggtcagaactccttatagtcaaagtttaccggcctgttcctcagagtaaaccaaatcctgtgtatgcacatcgttagattgaagcattttgcatagattatcgacttttcagtctatggttagtaaaattcaaaacattcaaacctacaaggtaatttgagttttgcagagctttaggctttatttgtaagttataagatccactaagtgcatcaaatttatcatagcaatttcagagtagagttgaactattagtaattcagaaattggtctaacacttatttgaagcttcaccaatatatagtttgctgaagatattagattttgtacttctcccagtttactttatatggattttaacttctgcgaaatatggactagcaagatatatactgtatctatcgatgtcagtataagttaaaaatggcggtaatactcttaagaaacaatataattgtacttctgcattcaaaacattttttttggatgtatgaatactagtctgaacatgtgttcgagtagtcatgcgcattactatacaagcagaaaggggcttctgccttttaaaaaatagcgcacttgatctgtgaatattttacattttatgttgacttcatttgtgttgatttcttgaattcacttgttccagcttgtgcactatgttaaccgtgactccttgggcttggcaaatgacttccattcacttgggtttgtccctgagggaacagacctacatggggttgctgatgcattacgtgtttcctttggtgatggaaggaggcaatcaaatgattttcaggtttgttaatattttttttgggtatatgtagtggactagcctttactggatttccatctgattcacctctgaaaatgcaatgcattttttcttaaatcatactactacttgggtctttatcacttgtctcgtactaaattctcattatgggtcatttcttttttcaattgtatatgcttgcagcttcatctgccacctttactttagtttaatgtgggtgagttggtgtccttgttaatcaatttttttttgccttatatagggggtgatgagccatctgtatgatgtcatgtatgagtttaatttctctcttcctccggattacgcactggtgataagagcactgggttctttagaagggactgcaaaagcattggatcctgacttcaaagttattgaaagtgcatacccatttgtcattgggaggctacttgaagaccccagccctgatatgaggaaaatattgaggcagctcttgatatgcgatgatggatccatcagatggaatcgactggagcggctggtaaggcgatccttaattatttctgttttgcttgctgtttcattttgtcttgtagaaagaattttgcaatacattcttcataaaaatatataaagattacatatctgtcatgtttatgatgaacaacaattaattttctttcctttagttagttccattaggatgattaagaacttgtgtcacccctatagtcctgtacacttggaatactatcactaggggtgctaaaggtccgaaatccagatcaaatccaccctgctccattcatctgtatgcatacttcccgatccactccaaatcgattcctcattcacagaatccaaagttccaaaccaaccctccccaaagtataaaagcaatccaaaccgatccaatccaaaggtaaaaaaatgggtggaacccattcggagaccattcccaaaccaaaagaaatccaaaaggggggcatcgctgcggacgctgatgaggcaacgagaagatcgttgtccccctccatgctccggcgcggccggcttctagaacacaccactggcggacggaaattcggtatcatctatgctggcagcaactttaacttgtggagtcttgagtcaatggtgatggacagattaaaatttagtctttgcagatcgattagtgaaatgaaaaccaatgcaggagtgagatgtatgcatgtgtgcccaggagatgatcacctggctgcaaccatggaggaagtgagtgcggcggcggactgctgctgcttgtacttgttgctgacgaagatctctgacggatgcaccaccgccttgctccctaagctcgtagcctcaaggtcctcgaactacctcatggtcgcaaggtgctcaaagttgatgcacatggtgtccaagcccagatcggcagcggcgggcatgtctcgggcatcaatgtgctcatgaggaagatcagtgtgtccatctggccagcatagaggatttggggacgatccagtgaaaatccatgggttgaacccattttggacccaaaagtatacagccaaaatccagatcgatccaatccactttcagcgaagtccaaaccgccccagccctacagcttcgtcagatcatttctacccaaccaaatacaatccaaaatgaaaaccaaaccattataccgattcccacccaacccattagtaggcctaacgataacatgcaaggtccaaagttatggacacactgaaatgcttatgatttacaacaattaatttatttccttgatttcattggagtgattaagaatctgtcatacccctcttgttacttgtgcacttggaataactatcaaacacttatatatgcatgaacgtattacataagcataattttctagtgctgaccatcattcatgtgggaccagtattgtaactgcgaacatggcactaagagatagaacttatcatgataattttgtttttgcatcaatatcatgcaattatttggcaaatatccgtcatgtcttgctgtaatggtcactaaaaatccttgaaatgttcagattgcagctatatccgaacagtcagaatcttcaaataagtctgaagatagatctggtgaaaatgctgccaacaaacctgggtggagatcattcgacatgcattctgtggttgcagctacagaagacctttttcatttcattttatcaaggaaaggctggagggttcgtgtttttcttgttcaggacattgtaaaagcttcagatgcattcctacaagaagcaacatttccaggtatattcgatgaagaggggactacaggggagctacatccagaggttaggacatcttatttcttagattgaaaatgtattcatttcagttttgcatgtagatagactaatttaaccaatttaccactggtgcttaaccacttcacatatttttggacatacgcagcttatatttcttttctgctacatgtttagagtcataaacaaccctcattgctctatttcacaatctttttttggttgactgctgtttgtaaccttgcactatttgtggtgaactactgcatgtatttgtcaattgccttgggatgtgttgtttcaccgtgttgtgcttaacctcatttgcttgtatcagaaagttgccctcatcacatacttgttcactgctgcataagcattatagctttcgatttttggatcgatttattattttcacccctaagaatgttcattcatttttatgagaaaagatatgattctctaagctacatctgtactgtaaacgtgtggatcatcgcacatgctaatacttcgtagtgcctaagcgagtatatatactaaatgtttcttttggaatgcagagaagtaaaatgataagaagggtggtacatggtgttcaatcattccgtcaagctatcagtttggccccagatgcctggactgctatgctattccgtaccttgttgaaacctgaatcccagaaatttattcttgatgtctttctagccttggcaatgcattcctgttacaagattccagaaacaagctggatttgtatgtcgagattcctgaattacttggacaggcagggtaggtaacacagataatggaaatgcagtctaattatcttttgatctg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188257.1 RefSeq:Os07g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0459200

2014-06-26T08:48:49Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-10''is located in chromosome 7 which contains 7 extrons, and encodes a protein of 623 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0459200|
Description = Similar to Possible kinase|
Version = NM_001188257.1 GI:297725644 GeneID:9271235|
Length = 9562 bp|
Definition = Oryza sativa Japonica Group Os07g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:16673236..16682797|
CDS = 16679417..16679478,16679599..16679734,16680268..16680339,16680714..16680755,16680982..16681225 ,16682519..16682700|
GCID = <gbrowseImage1>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaagttccaggagaccttgatccggttggggcctttttacatcaagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatga</cdnaseq>|
AA = <aaseq>MAGPTSRRLLLLVARRAGHLCRHHHHHHHRDGLVLARSLQAAAA AAASSPPPLPASPPARSFSSAFSSVHGERPSSEYAKIRKESLESQFGRILGSSSRTLF ADRGFGPFLAMYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQA LSTRPDILPNAYCQELSKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAA SLGQVYKVMQLIYTLESLSQSKFRGLE</aaseq>|
DNA = <dnaseqindica>3320..3381#3064..3199#2459..2530#2043..2084#1573..1816#98..279#ctctcttctccctccccaagcaaagcatcggcatctctcctccctaaaaccccacctcccgtctccccggggcggcggagccgatgagatcccggccatggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggaggtaatcgaatcccacaggcgcttgatctctgagccgccaccatcgcgtcgttctccctaggtcgcaaacccgttatctaccgagagcaggtccattttaggttcttatactacatcgaagtaattgtattcttaacaatttgcactaacggggaggagagaagtgggagatacactagcaaaaatgcacaatgacagcactgatttgcggagccattttgtaacgattattgggataatagcagagaactatttttgcttctcacaagttacaactatcaagttttctctgcctgtgcaatcatgtactagccatgcacgcatctgtttcttggttgtgtgatagtttggagtcatcgttgtcaatccattttaatcttacataccatgtactgtattagataacactgcataaatcataataggcgaagcaaacattttgcaccgtaatggtgctgaatttagctattttaaatgtagcaaacttttaaccatatcagctttctggctgattccttctactttctaagctctcttatgtttgcattgtcatacttgtgttttgcctccatgagtacaacttgatacagttcaactcgctaattcaaccagtcgtaagttatgtaaccatccaatcacgtataagtgcaatatgcactgttttacaaagatcttcaacaaatggctacaccgttgtgctcaatatcactatgaatcaatatgtgttctccctggctctatcttaagtctgaactgaaatttcttcatttgggtaaagtatgtttgcctactcatctcaaccttaattaccacccattgtatgaggtagctgtgaggcaaacgttttgtaccttagtggtgctggatttgtctattttaattatccttatgctagaacgatttgtggcttattccttccaacttttaacttatctagcatacttttgttttgcctccattgacataccttgatacagttctattcgcatgttggaccattgtaagttatttaatcatctggtcacttataagtgcatcaacatataaggtattgctcagatctccaataattcttttcataccaatatatccaataatgactatacactgccacgctcaatcatcactctgaagcaaagttttactccctcagcttgtctaagctcagctgaatgttctccatttgataatccaaatgctcatgccatttcaaagttctttttttttcaggaacatcaagttgaataagtgagtagatatattgttcttaggaggtttattttctgttttgtagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaaggtatttcttttctgcctttcttcctactctaagggtgtgttcggctgccctatttcagctgtgatacagccattttgcacagtaatttgtgtcactacaaacagctgtgtggctgtgttgcagcggctggccggctgcaacgtgcagccgaacacaccctaactctctacgagtacttgttatactttgagtttcatgtatctggttttcattttactcatttcagttccaggagaccttgatccggttggggcctttttacatcaaggtaggtcagagcaatgcattttaataaatgaccaacattacaatgtatctttactgtaacagatattcttatgcttattttcactgtttacctttttatggtggatatttccttgttaatgaggagaaatcattaaacataaaattcatgaccatcaaaagcaattaccattgtaccctagtcacattggccttttcaatactcgcatagattcaatgcatttcatcatgacaagttactatgtctatatttggtttttaactggaagaattcattctcaatggtttattttgtcttagatttgatatgttttccttattcactgttgaaagttaccaatctgttcattttccttgtctctttgcatgatgcagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggtagtgctttgttgtgcattttataattttgcttaactgatgggaaacaagtagcatttaccttcaacatacttcatctaattgtttgcaccaactttctgtaagtattgagggatcagggcagagctaggtcccaaaattgaggcataaaaagtgctaaactaagtctaggttccaaaatagacagtactcaaagtctgtttatatgggatttccgcagttagtaatgctctactcaatggaattgaaggcaatcatgttgaagctttaagccgctgtcaaaatttgaattttaaaacttgattttgatgtttttctttgaagtttattttccagcactggcttttaaatcactaaggacacacataaaagttttacccacaaatattttttttgcggcttataatcagcattaggctaggtcaatcaatggcagccgtatggcttataagcacccttaagccgtacattccttttgctttatttatttctttttagaggtgtatgttgacaaatcacaactatctcatcaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaaggttagccatgcctgacaagacattttatctaatgagttggtggctatcttccttaagaccttaagcatctatttcagacctgagttctccaagttgaaatgcattctttgatatttcaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatgactcccttgctgactctagatgcacttttgttccatatgatcggaggacagttgaaacggtttgcaaaggctcgcaaagatttactggtagcagtcaatgagattgtgagcatttaacttctgtttcaattggatataatgatctattcatgctaatccgatactattagattataaccttatgtcctgcttacattttctatggttccatgttaatttaatatgtgttgttctaatgtgtgttctaatgaaagtgaaatactttcctaatactgtatttttctaggttttgttgatgcatgaaaatgtatttttgtggtcaaaataatgtcatagaaaccatgtcaatatctcaatccaaaatttaagttttgtattgtaggactaataatagatggtctcattaagacaactgtaatataatttgtttcagacaatttagttgcaactgccatatactatgtttttccattctagaccacgtttcccatattttggccgttaatatatattgcaatatagtttgcttatagcttttgaaccttctgttcaacaggtcaggcacatgtttgatgagattgattatgttttagagggaaggaatgctgaaagatttgcgagactttattctcatggtgagttcttaatttttattcaatttttgatttttgctacctgctagtgtgggttcctctaaatctatctgacaagcttgctctcctgtttcccatttatctcgaccatcatatccaaaccttttacattcacatttcctagtgctctttcagctcagattgatctctggctctctgctatttattatacaaagcacactgtagggccatcattgtgttttttttcctggcagatttaggtgggaatagctccggagatgggacaagtatcaaagtcccaaaggtctactggaattttacacgtaaatctatattaactctagaatggattgatgggatcaagctcactgatgctgagcgcattggcaaagccaatctgaacaggaaaaggatgatcgatgaggtatcgcagaaatgttatacttactgtatattgtgactaacacaatactatgaagaattcagatttatattaaatcactactttcctctctccacatattttcataacatgagcttgtctgaccatatacattgtacatagacttgcaaattgtgcttgcatttgtttgtaccgtgcaactgttttgttgggcttgtttctgcgtgtttttcagtgtattgtccaggtgtttttcaccattttagcacattttcgtacctcttctgtttttcatggaaggtgtttggtagtcttgcatgtatagtcgtgttcttatttaggcatgctaatatttcaaaacaaattttacagggtctctattgttcattgaggcagcttcttgaagaaggctttttccatgcagacccccatccaggtaatctggttgcaactgaaggtggatcactcgcgtattttgattttggtatgatgggggatattccaaggcactatcgtgtagggcttatacaaatggtaatcattgctcccttttctcatgtgtaaccatatggttctgttggtttttcttcctgatttggtttttgtcggttgctaagaactgtttttgaccggttgcagtgcagtctggtgcatttctgcacagttttgcatcttcaaattttgaattgaaaattcgaaatgactggtaacaaacttcgaacgatttggttaccatcatattgtagagtggaaataggttatatcatggtacaaaataaatattaagaaatgattttcataatgcaaaccatatacaacctggcccatcttctgaacctggccctgttcgtatcttctaaaggtagaggataaagttttggatactcgtggcacgcttttcaaactgctaaatggtgcgtttcgtgcgaaaactttctatatgaaaattgctctaaaatatcagattaatcaatttttcatgtttgtaataattaaaactcaattaatcgcacgttattaccacctcgttttgtgtgaaacacttaatctttatcttcatcttcatcttcaggagattcaaacaccacctcaggctaccttgggtcacggttaaatcacaaataaattgaatagcatgtacagaaacaagtatatatatacataattgcttcctacatgtaccaaatttgaaatttaaattatgtttaaaactactcttctaatttatctcctggtcagaactccttatagtcaaagtttaccggcctgttcctcagagtaaaccaaatcctgtgtatgcacatcgttagattgaagcattttgcatagattatcgacttttcagtctatggttagtaaaattcaaaacattcaaacctacaaggtaatttgagttttgcagagctttaggctttatttgtaagttataagatccactaagtgcatcaaatttatcatagcaatttcagagtagagttgaactattagtaattcagaaattggtctaacacttatttgaagcttcaccaatatatagtttgctgaagatattagattttgtacttctcccagtttactttatatggattttaacttctgcgaaatatggactagcaagatatatactgtatctatcgatgtcagtataagttaaaaatggcggtaatactcttaagaaacaatataattgtacttctgcattcaaaacattttttttggatgtatgaatactagtctgaacatgtgttcgagtagtcatgcgcattactatacaagcagaaaggggcttctgccttttaaaaaatagcgcacttgatctgtgaatattttacattttatgttgacttcatttgtgttgatttcttgaattcacttgttccagcttgtgcactatgttaaccgtgactccttgggcttggcaaatgacttccattcacttgggtttgtccctgagggaacagacctacatggggttgctgatgcattacgtgtttcctttggtgatggaaggaggcaatcaaatgattttcaggtttgttaatattttttttgggtatatgtagtggactagcctttactggatttccatctgattcacctctgaaaatgcaatgcattttttcttaaatcatactactacttgggtctttatcacttgtctcgtactaaattctcattatgggtcatttcttttttcaattgtatatgcttgcagcttcatctgccacctttactttagtttaatgtgggtgagttggtgtccttgttaatcaatttttttttgccttatatagggggtgatgagccatctgtatgatgtcatgtatgagtttaatttctctcttcctccggattacgcactggtgataagagcactgggttctttagaagggactgcaaaagcattggatcctgacttcaaagttattgaaagtgcatacccatttgtcattgggaggctacttgaagaccccagccctgatatgaggaaaatattgaggcagctcttgatatgcgatgatggatccatcagatggaatcgactggagcggctggtaaggcgatccttaattatttctgttttgcttgctgtttcattttgtcttgtagaaagaattttgcaatacattcttcataaaaatatataaagattacatatctgtcatgtttatgatgaacaacaattaattttctttcctttagttagttccattaggatgattaagaacttgtgtcacccctatagtcctgtacacttggaatactatcactaggggtgctaaaggtccgaaatccagatcaaatccaccctgctccattcatctgtatgcatacttcccgatccactccaaatcgattcctcattcacagaatccaaagttccaaaccaaccctccccaaagtataaaagcaatccaaaccgatccaatccaaaggtaaaaaaatgggtggaacccattcggagaccattcccaaaccaaaagaaatccaaaaggggggcatcgctgcggacgctgatgaggcaacgagaagatcgttgtccccctccatgctccggcgcggccggcttctagaacacaccactggcggacggaaattcggtatcatctatgctggcagcaactttaacttgtggagtcttgagtcaatggtgatggacagattaaaatttagtctttgcagatcgattagtgaaatgaaaaccaatgcaggagtgagatgtatgcatgtgtgcccaggagatgatcacctggctgcaaccatggaggaagtgagtgcggcggcggactgctgctgcttgtacttgttgctgacgaagatctctgacggatgcaccaccgccttgctccctaagctcgtagcctcaaggtcctcgaactacctcatggtcgcaaggtgctcaaagttgatgcacatggtgtccaagcccagatcggcagcggcgggcatgtctcgggcatcaatgtgctcatgaggaagatcagtgtgtccatctggccagcatagaggatttggggacgatccagtgaaaatccatgggttgaacccattttggacccaaaagtatacagccaaaatccagatcgatccaatccactttcagcgaagtccaaaccgccccagccctacagcttcgtcagatcatttctacccaaccaaatacaatccaaaatgaaaaccaaaccattataccgattcccacccaacccattagtaggcctaacgataacatgcaaggtccaaagttatggacacactgaaatgcttatgatttacaacaattaatttatttccttgatttcattggagtgattaagaatctgtcatacccctcttgttacttgtgcacttggaataactatcaaacacttatatatgcatgaacgtattacataagcataattttctagtgctgaccatcattcatgtgggaccagtattgtaactgcgaacatggcactaagagatagaacttatcatgataattttgtttttgcatcaatatcatgcaattatttggcaaatatccgtcatgtcttgctgtaatggtcactaaaaatccttgaaatgttcagattgcagctatatccgaacagtcagaatcttcaaataagtctgaagatagatctggtgaaaatgctgccaacaaacctgggtggagatcattcgacatgcattctgtggttgcagctacagaagacctttttcatttcattttatcaaggaaaggctggagggttcgtgtttttcttgttcaggacattgtaaaagcttcagatgcattcctacaagaagcaacatttccaggtatattcgatgaagaggggactacaggggagctacatccagaggttaggacatcttatttcttagattgaaaatgtattcatttcagttttgcatgtagatagactaatttaaccaatttaccactggtgcttaaccacttcacatatttttggacatacgcagcttatatttcttttctgctacatgtttagagtcataaacaaccctcattgctctatttcacaatctttttttggttgactgctgtttgtaaccttgcactatttgtggtgaactactgcatgtatttgtcaattgccttgggatgtgttgtttcaccgtgttgtgcttaacctcatttgcttgtatcagaaagttgccctcatcacatacttgttcactgctgcataagcattatagctttcgatttttggatcgatttattattttcacccctaagaatgttcattcatttttatgagaaaagatatgattctctaagctacatctgtactgtaaacgtgtggatcatcgcacatgctaatacttcgtagtgcctaagcgagtatatatactaaatgtttcttttggaatgcagagaagtaaaatgataagaagggtggtacatggtgttcaatcattccgtcaagctatcagtttggccccagatgcctggactgctatgctattccgtaccttgttgaaacctgaatcccagaaatttattcttgatgtctttctagccttggcaatgcattcctgttacaagattccagaaacaagctggatttgtatgtcgagattcctgaattacttggacaggcagggtaggtaacacagataatggaaatgcagtctaattatcttttgatctg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188257.1 RefSeq:Os07g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0459200

2014-06-26T08:47:56Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-10''is located in chromosome 7 which contains 7 extrons, and encodes a protein of 623 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0459200|
Description = Similar to Possible kinase|
Version = NM_001188257.1 GI:297725644 GeneID:9271235|
Length = 9562 bp|
Definition = Oryza sativa Japonica Group Os07g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:16673236..16682797|
CDS = 16679417..16679478,16679599..16679734,16680268..16680339,16680714..16680755,16680982..16681225 ,16682519..16682700|
GCID = <gbrowseImage1>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:16673236..16682797
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaagttccaggagaccttgatccggttggggcctttttacatcaagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatga</cdnaseq>|
AA = <aaseq>MAGPTSRRLLLLVARRAGHLCRHHHHHHHRDGLVLARSLQAAAA AAASSPPPLPASPPARSFSSAFSSVHGERPSSEYAKIRKESLESQFGRILGSSSRTLF ADRGFGPFLAMYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQA LSTRPDILPNAYCQELSKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAA SLGQVYKVMQLIYTLESLSQSKFRGLE</aaseq>|
DNA = <dnaseqindica>3320..3381#3064..3199#2459..2530#2043..2084#1573..1816#98..279#ctctcttctccctccccaagcaaagcatcggcatctctcctccctaaaaccccacctcccgtctccccggggcggcggagccgatgagatcccggccatggcgggccccacctcgcgccgcctcctcctcctcgtcgcccgccgcgctggtcacctctgccgccaccaccaccaccaccaccaccgcgacggactcgtcctggcccgctcgctccaggccgctgccgctgccgccgcctcgtcgccaccaccgcttcccgcctcgcccccggccaggaggtaatcgaatcccacaggcgcttgatctctgagccgccaccatcgcgtcgttctccctaggtcgcaaacccgttatctaccgagagcaggtccattttaggttcttatactacatcgaagtaattgtattcttaacaatttgcactaacggggaggagagaagtgggagatacactagcaaaaatgcacaatgacagcactgatttgcggagccattttgtaacgattattgggataatagcagagaactatttttgcttctcacaagttacaactatcaagttttctctgcctgtgcaatcatgtactagccatgcacgcatctgtttcttggttgtgtgatagtttggagtcatcgttgtcaatccattttaatcttacataccatgtactgtattagataacactgcataaatcataataggcgaagcaaacattttgcaccgtaatggtgctgaatttagctattttaaatgtagcaaacttttaaccatatcagctttctggctgattccttctactttctaagctctcttatgtttgcattgtcatacttgtgttttgcctccatgagtacaacttgatacagttcaactcgctaattcaaccagtcgtaagttatgtaaccatccaatcacgtataagtgcaatatgcactgttttacaaagatcttcaacaaatggctacaccgttgtgctcaatatcactatgaatcaatatgtgttctccctggctctatcttaagtctgaactgaaatttcttcatttgggtaaagtatgtttgcctactcatctcaaccttaattaccacccattgtatgaggtagctgtgaggcaaacgttttgtaccttagtggtgctggatttgtctattttaattatccttatgctagaacgatttgtggcttattccttccaacttttaacttatctagcatacttttgttttgcctccattgacataccttgatacagttctattcgcatgttggaccattgtaagttatttaatcatctggtcacttataagtgcatcaacatataaggtattgctcagatctccaataattcttttcataccaatatatccaataatgactatacactgccacgctcaatcatcactctgaagcaaagttttactccctcagcttgtctaagctcagctgaatgttctccatttgataatccaaatgctcatgccatttcaaagttctttttttttcaggaacatcaagttgaataagtgagtagatatattgttcttaggaggtttattttctgttttgtagcttttctagtgcattctcaagtgttcatggggagagaccgtcctcagaatatgcaaagatcagaaaggagtcgttagaaagccagtttggaaggatcttgggttcaagctcacgtacactatttgcagatcgtggctttggtccattccttgcaatgtacagggcagcaattatctcttttcatgttatgaagctcactatttggcatttattgctcagtgatgtgcacaaacgggctgagaaggtatttcttttctgcctttcttcctactctaagggtgtgttcggctgccctatttcagctgtgatacagccattttgcacagtaatttgtgtcactacaaacagctgtgtggctgtgttgcagcggctggccggctgcaacgtgcagccgaacacaccctaactctctacgagtacttgttatactttgagtttcatgtatctggttttcattttactcatttcagttccaggagaccttgatccggttggggcctttttacatcaaggtaggtcagagcaatgcattttaataaatgaccaacattacaatgtatctttactgtaacagatattcttatgcttattttcactgtttacctttttatggtggatatttccttgttaatgaggagaaatcattaaacataaaattcatgaccatcaaaagcaattaccattgtaccctagtcacattggccttttcaatactcgcatagattcaatgcatttcatcatgacaagttactatgtctatatttggtttttaactggaagaattcattctcaatggtttattttgtcttagatttgatatgttttccttattcactgttgaaagttaccaatctgttcattttccttgtctctttgcatgatgcagcttggacaagcattgagcacacgccctgatatattgccgaatgcatattgtcaagagctctctaagctacaggtagtgctttgttgtgcattttataattttgcttaactgatgggaaacaagtagcatttaccttcaacatacttcatctaattgtttgcaccaactttctgtaagtattgagggatcagggcagagctaggtcccaaaattgaggcataaaaagtgctaaactaagtctaggttccaaaatagacagtactcaaagtctgtttatatgggatttccgcagttagtaatgctctactcaatggaattgaaggcaatcatgttgaagctttaagccgctgtcaaaatttgaattttaaaacttgattttgatgtttttctttgaagtttattttccagcactggcttttaaatcactaaggacacacataaaagttttacccacaaatattttttttgcggcttataatcagcattaggctaggtcaatcaatggcagccgtatggcttataagcacccttaagccgtacattccttttgctttatttatttctttttagaggtgtatgttgacaaatcacaactatctcatcaggaccagataccaccatttcctactcgtatcgcaatcaggactattgagtctcaactgggttctcgaatttctgatctatttgctgatatcagcccagagccagttgctgcagcatcgctggggcaagtatataaaggttagccatgcctgacaagacattttatctaatgagttggtggctatcttccttaagaccttaagcatctatttcagacctgagttctccaagttgaaatgcattctttgatatttcaagtcatgcagctcatctacactctggagagcttgtcgcagtcaaagttcagaggcctggaatgactcccttgctgactctagatgcacttttgttccatatgatcggaggacagttgaaacggtttgcaaaggctcgcaaagatttactggtagcagtcaatgagattgtgagcatttaacttctgtttcaattggatataatgatctattcatgctaatccgatactattagattataaccttatgtcctgcttacattttctatggttccatgttaatttaatatgtgttgttctaatgtgtgttctaatgaaagtgaaatactttcctaatactgtatttttctaggttttgttgatgcatgaaaatgtatttttgtggtcaaaataatgtcatagaaaccatgtcaatatctcaatccaaaatttaagttttgtattgtaggactaataatagatggtctcattaagacaactgtaatataatttgtttcagacaatttagttgcaactgccatatactatgtttttccattctagaccacgtttcccatattttggccgttaatatatattgcaatatagtttgcttatagcttttgaaccttctgttcaacaggtcaggcacatgtttgatgagattgattatgttttagagggaaggaatgctgaaagatttgcgagactttattctcatggtgagttcttaatttttattcaatttttgatttttgctacctgctagtgtgggttcctctaaatctatctgacaagcttgctctcctgtttcccatttatctcgaccatcatatccaaaccttttacattcacatttcctagtgctctttcagctcagattgatctctggctctctgctatttattatacaaagcacactgtagggccatcattgtgttttttttcctggcagatttaggtgggaatagctccggagatgggacaagtatcaaagtcccaaaggtctactggaattttacacgtaaatctatattaactctagaatggattgatgggatcaagctcactgatgctgagcgcattggcaaagccaatctgaacaggaaaaggatgatcgatgaggtatcgcagaaatgttatacttactgtatattgtgactaacacaatactatgaagaattcagatttatattaaatcactactttcctctctccacatattttcataacatgagcttgtctgaccatatacattgtacatagacttgcaaattgtgcttgcatttgtttgtaccgtgcaactgttttgttgggcttgtttctgcgtgtttttcagtgtattgtccaggtgtttttcaccattttagcacattttcgtacctcttctgtttttcatggaaggtgtttggtagtcttgcatgtatagtcgtgttcttatttaggcatgctaatatttcaaaacaaattttacagggtctctattgttcattgaggcagcttcttgaagaaggctttttccatgcagacccccatccaggtaatctggttgcaactgaaggtggatcactcgcgtattttgattttggtatgatgggggatattccaaggcactatcgtgtagggcttatacaaatggtaatcattgctcccttttctcatgtgtaaccatatggttctgttggtttttcttcctgatttggtttttgtcggttgctaagaactgtttttgaccggttgcagtgcagtctggtgcatttctgcacagttttgcatcttcaaattttgaattgaaaattcgaaatgactggtaacaaacttcgaacgatttggttaccatcatattgtagagtggaaataggttatatcatggtacaaaataaatattaagaaatgattttcataatgcaaaccatatacaacctggcccatcttctgaacctggccctgttcgtatcttctaaaggtagaggataaagttttggatactcgtggcacgcttttcaaactgctaaatggtgcgtttcgtgcgaaaactttctatatgaaaattgctctaaaatatcagattaatcaatttttcatgtttgtaataattaaaactcaattaatcgcacgttattaccacctcgttttgtgtgaaacacttaatctttatcttcatcttcatcttcaggagattcaaacaccacctcaggctaccttgggtcacggttaaatcacaaataaattgaatagcatgtacagaaacaagtatatatatacataattgcttcctacatgtaccaaatttgaaatttaaattatgtttaaaactactcttctaatttatctcctggtcagaactccttatagtcaaagtttaccggcctgttcctcagagtaaaccaaatcctgtgtatgcacatcgttagattgaagcattttgcatagattatcgacttttcagtctatggttagtaaaattcaaaacattcaaacctacaaggtaatttgagttttgcagagctttaggctttatttgtaagttataagatccactaagtgcatcaaatttatcatagcaatttcagagtagagttgaactattagtaattcagaaattggtctaacacttatttgaagcttcaccaatatatagtttgctgaagatattagattttgtacttctcccagtttactttatatggattttaacttctgcgaaatatggactagcaagatatatactgtatctatcgatgtcagtataagttaaaaatggcggtaatactcttaagaaacaatataattgtacttctgcattcaaaacattttttttggatgtatgaatactagtctgaacatgtgttcgagtagtcatgcgcattactatacaagcagaaaggggcttctgccttttaaaaaatagcgcacttgatctgtgaatattttacattttatgttgacttcatttgtgttgatttcttgaattcacttgttccagcttgtgcactatgttaaccgtgactccttgggcttggcaaatgacttccattcacttgggtttgtccctgagggaacagacctacatggggttgctgatgcattacgtgtttcctttggtgatggaaggaggcaatcaaatgattttcaggtttgttaatattttttttgggtatatgtagtggactagcctttactggatttccatctgattcacctctgaaaatgcaatgcattttttcttaaatcatactactacttgggtctttatcacttgtctcgtactaaattctcattatgggtcatttcttttttcaattgtatatgcttgcagcttcatctgccacctttactttagtttaatgtgggtgagttggtgtccttgttaatcaatttttttttgccttatatagggggtgatgagccatctgtatgatgtcatgtatgagtttaatttctctcttcctccggattacgcactggtgataagagcactgggttctttagaagggactgcaaaagcattggatcctgacttcaaagttattgaaagtgcatacccatttgtcattgggaggctacttgaagaccccagccctgatatgaggaaaatattgaggcagctcttgatatgcgatgatggatccatcagatggaatcgactggagcggctggtaaggcgatccttaattatttctgttttgcttgctgtttcattttgtcttgtagaaagaattttgcaatacattcttcataaaaatatataaagattacatatctgtcatgtttatgatgaacaacaattaattttctttcctttagttagttccattaggatgattaagaacttgtgtcacccctatagtcctgtacacttggaatactatcactaggggtgctaaaggtccgaaatccagatcaaatccaccctgctccattcatctgtatgcatacttcccgatccactccaaatcgattcctcattcacagaatccaaagttccaaaccaaccctccccaaagtataaaagcaatccaaaccgatccaatccaaaggtaaaaaaatgggtggaacccattcggagaccattcccaaaccaaaagaaatccaaaaggggggcatcgctgcggacgctgatgaggcaacgagaagatcgttgtccccctccatgctccggcgcggccggcttctagaacacaccactggcggacggaaattcggtatcatctatgctggcagcaactttaacttgtggagtcttgagtcaatggtgatggacagattaaaatttagtctttgcagatcgattagtgaaatgaaaaccaatgcaggagtgagatgtatgcatgtgtgcccaggagatgatcacctggctgcaaccatggaggaagtgagtgcggcggcggactgctgctgcttgtacttgttgctgacgaagatctctgacggatgcaccaccgccttgctccctaagctcgtagcctcaaggtcctcgaactacctcatggtcgcaaggtgctcaaagttgatgcacatggtgtccaagcccagatcggcagcggcgggcatgtctcgggcatcaatgtgctcatgaggaagatcagtgtgtccatctggccagcatagaggatttggggacgatccagtgaaaatccatgggttgaacccattttggacccaaaagtatacagccaaaatccagatcgatccaatccactttcagcgaagtccaaaccgccccagccctacagcttcgtcagatcatttctacccaaccaaatacaatccaaaatgaaaaccaaaccattataccgattcccacccaacccattagtaggcctaacgataacatgcaaggtccaaagttatggacacactgaaatgcttatgatttacaacaattaatttatttccttgatttcattggagtgattaagaatctgtcatacccctcttgttacttgtgcacttggaataactatcaaacacttatatatgcatgaacgtattacataagcataattttctagtgctgaccatcattcatgtgggaccagtattgtaactgcgaacatggcactaagagatagaacttatcatgataattttgtttttgcatcaatatcatgcaattatttggcaaatatccgtcatgtcttgctgtaatggtcactaaaaatccttgaaatgttcagattgcagctatatccgaacagtcagaatcttcaaataagtctgaagatagatctggtgaaaatgctgccaacaaacctgggtggagatcattcgacatgcattctgtggttgcagctacagaagacctttttcatttcattttatcaaggaaaggctggagggttcgtgtttttcttgttcaggacattgtaaaagcttcagatgcattcctacaagaagcaacatttccaggtatattcgatgaagaggggactacaggggagctacatccagaggttaggacatcttatttcttagattgaaaatgtattcatttcagttttgcatgtagatagactaatttaaccaatttaccactggtgcttaaccacttcacatatttttggacatacgcagcttatatttcttttctgctacatgtttagagtcataaacaaccctcattgctctatttcacaatctttttttggttgactgctgtttgtaaccttgcactatttgtggtgaactactgcatgtatttgtcaattgccttgggatgtgttgtttcaccgtgttgtgcttaacctcatttgcttgtatcagaaagttgccctcatcacatacttgttcactgctgcataagcattatagctttcgatttttggatcgatttattattttcacccctaagaatgttcattcatttttatgagaaaagatatgattctctaagctacatctgtactgtaaacgtgtggatcatcgcacatgctaatacttcgtagtgcctaagcgagtatatatactaaatgtttcttttggaatgcagagaagtaaaatgataagaagggtggtacatggtgttcaatcattccgtcaagctatcagtttggccccagatgcctggactgctatgctattccgtaccttgttgaaacctgaatcccagaaatttattcttgatgtctttctagccttggcaatgcattcctgttacaagattccagaaacaagctggatttgtatgtcgagattcctgaattacttggacaggcagggtaggtaacacagataatggaaatgcagtctaattatcttttgatctg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188257.1 RefSeq:Os07g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0558000

2014-06-26T08:42:33Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
OsABC1-11 is located in chromosome 7 with 12 extrons, and this gene encodes a protein that contains 438 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0558000|
Description = ABC-1 domain containing protein|
Version = NM_001066506.1 GI:115472744 GeneID:4343579|
Length = 5848 bp|
Definition = Oryza sativa Japonica Group Os07g0558000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:22927907..22933754|
CDS = 22929425..22929526,22929788..22929943,22931048..22931317,22931530..22932844,22933432..22933460 |
GCID = <gbrowseImage1>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctacggctggtggggatcggcgagaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataa</cdnaseq>|
AA = <aaseq>MLRLVGIGERLLAVGTNRRAAYFSQPSHRSGYYTAARDNGLSAK RKIPTVFSRMFSHYKVIVRKNKAGDHKCRNRISRGFRTFSGTVANSSATQHAQLAWKR LSHTYMYSGPRFPLISRAACALSFSFTRFHVVPGVMALAFGKFALSRPVLADSPHLPT MEGIVTNARDTRQFLSSIVWSIWEGVTLLIRAVHLAILFFPATALSPFADTFSVGFRR RWLRLVRRTLEIAGPAFIKWGQWAATRPDLFPSDLCVELAKLHSAAPAHGFAYSKATI EKAFGRKLSEIFETFEEEPVASGSIAQVHRATLRDQHTEKHVAVKVRHPGVGESIKKD FLLINLLAKASNVVPGLSWLRLDESVRQFAVFMMSQVDLSREAAHLSRFIYNFRRWRH VSFPKPLYPLVHPSVLVETFENGESVSRFMDEIEGNARMKRDLAHIGTYAFLKMLLED NFIHADMHPGNILVRLNERKPKRKLFFRPKPHIVFLDVGMTAELTRDDRDNLQQFFKA VATRDGRTAANCTLQLSKQQSCPNPVAFIEELDKTFSFWGTPEGDIFHPVECMHQLLD TVRRHKVNIDGNICTVMVTILVLEGWQRKLDPGFDIMHTLKTLLLDKDIKQPVDFFS</aaseq>|
DNA = <dnaseqindica>4229..4330#3812..3967#2438..2707#911..2225#295..323#gcgcaaatccgaaaagaaaaacaaaagaaaaaggaaaaaaaaggggggaaaactcaggaagacgactcctcgccgccgacctacccgagcgaggagcaccccggcgggcggcggcgcgtggcggatcgcgcgggttccggctccgagcctccccctcccctctctctctcctgggctcgtcgtagtcgcggcgggcgcgggaggtggtctccggcggcggcggggcgcgtggtatggtccgtggcggcggcgggggctcgaccacccggtgaagttttttttttcttctccccgatgctacggctggtggggatcggcgagaggtgcgtgtctcgattcggccctcccgtggcttcccgtccttgtttcagattgggtggatcgggggttccagatttcgttaggagcgggtcggtttttggcttaactctgcctacttgtggaagcagtatgtcacgtggcgaattcggtgctagttttagtttctcgatttgtaggggtatagcgcggaaattggtagctgtggcagtttggaacgttgagattgctaagatgaattttgggcatcaaatgtagcttaaattggagattggaggatattcatggaattgtacattgaggggagctagtgaaccttagccaacagagtgaccaatttgtgatttaatgaatgcattgtgcattgccgcaattgggaaattgtctgtatatatgcttgtttaaatgccatgtagttgggagaattagggaaataaagcaattggtgtcttacttactgaatacatcgtgtattgcattggctgtgctgaattcttaattttaactgttgttaaacatagggttctgacaggtgtcaattaaagcttgagaacccacaaattcttatgttctgttttacctttgtaagcaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggtatgcatgtttacttattatgtgtgtttccttctgttctccttttcacctgggtagtggtgtttgtatctgactgggtaggctggtattgaggattgcattcataagagcttcagtagtgtttaatactgattttttcccctaacatatggcacattgctcctattagaatttctgtcactaaagtttctgctatcaatatctgtctccaggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggtaaattctaaaactatgctgttggggaacatttagaatttcacatgctatgtttgattgcagatagcttcatttcttaatcaggtacttcatatatcatacacagaataggagtgtggtgaggttttgatgcaacttgtgtctgtctacatatacattacgatattagatggtgttagggaccttatacaacataaacaatcgcagaagtttcagttgttaggtttttggggctttggtttcagaacgtgacttcttcaataggctaatctttgctcgaagtagtcaccctttgtactgtataggcattttcatgtattggaatctgattttcttatcagtttagatctagatttgatgtacaaaatattgaaaactgtattactagatttcctattaagattaatttcataacgttatatgctaccacaattcactaaaacatgctagaattcatgcagctaaaactgttaattttatatccaaacaatgtagttttcatatatgacaaagttaaatgtattttttttattgaaaaactcttaatatttacacaaatgtaatgactttggaatatgtgagaatataacttagtggtcaaagtgttttgttgactttgaaaataaaaggagatgtatttttttgttttatctgtaggaattattattattacatatcgatacgaagttccaaaatgtaatggtcaaagtttcatccaaacttgaaaagtcagtaatgtcaaataaatactccctccaatttttaatgtatgatgttaacttttagacataggtttgaccattcgccttactcaatttttttgtgcaaatatgcaaaagtataagtcacacttaaagtatctttaatgataaaacaaaccacaacaaaataaatggtaattacatttttttaataagacgaacggtcaaacgtatgttcaaaagtcaacagcgtcatatattaaaaattggaggaagaacggaaggggtatagaactatagattgtattaccagcctttggctattgcatgttgatttctaaactattattgtcatttaggtacatatttgtttgcataataattatatttcttttattggtaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggtaaacttatacattgtaatgtttgaaatctataaaatatttaccatacgtcatttattggattatatatctctacaaaaggatgctcagataaactaatctagggaaatattacttactagtgggtgtggttagcacttagcaaccacctttttctatgttacaggctaatctgatatccattgcttcctaagacctgaatgtgcctacggaaagaaacacatcatgcttatttatacaaggctattaattcttttgtaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataaacaagttcatgctttcaagtgccaaatctacgagcctcaggtactgtgcatttgtgcaaacaagtcatcgtttcttttaagtacatttgtgcaaacaagtcaccgtttcttttaagtttgtcttcctctcttgaaatttttttggcatacttgttctgtacttgtgttaaaagaataatacacatgatgataaccagccttcaacattatcatgggaaatatggcttattttttagggaataaaaaagagaacttctttagtgatcagtaccccagtgggttatagcaagtacattcagagcaatatttctaaattaacctccaactgattaggtgactattctttatgataagaagttgggataccgtctcaattataccaaaaaaaggaggggggagggtgtcccatcttttgtggtggactggttggccaggagcagttggagaatccacttggatctccgctgcatatatgctgtcacggcatgtgtacgcttggcaacggtcattaacttgatgctggcatatagcctcgttagcaacctgaccgtgctttatactatcctttcctcgtttcatgcctcagtatccatgctaaactgaaattagccgcttggttattcagcaaaatcaacaatctaacctgtgcaatctctctccttgacagaatatgcatatatacagcagagaaaggtgatgacaccatgggacagaagttcgcaaaccaagcaatctatactaatgccttatgtcatgttatgttctctctctttttttttaaacaacctctctacctgcaacttacggcattgggtttcacatttgacaaccttcagtgctaaaattttgtccagcgccttggtggagtaagccaccaaaattccttgtgctaaaatctcttatcgagaaacaaaccctgttagatgtagcaaccgaatattgataacgagcagaattacgttgcagattatacagaattttacttcctgctatgctgctgcaatcttgatgtgaatcaacttctgcgagtgatgatagacatttataaatggcgtatcattatattagccgttgttaaactctctgcagggctgaatgattgggctggaggaccgaggacggtgtcctttcgggcttcagcttcagctctctttccatggttcacctgtgctttcgctgcggctgccggaggacgaagaagtgagaaaaggtgcccccaaaaggtctgtgtcctgtaggattagcaggatccactacaccgcaggttgagtcagtccagtgaggattgaggatatcatcgactcaggctttggtcgccggcggccgggaaagctggtatttgccgagctgattaaaagtaggccagcctttcagtttaggttaggtcctgacatttaataaaagagaacctcactacagttagttaacgatagtagtaacatggaggagtagtattgtcaagaaaaaaggtgcagactgtataatcatcatttagtaatgacaaactattttctctct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066506.1 RefSeq:Os07g0558000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0558000

2014-06-26T08:38:38Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0558000|
Description = ABC-1 domain containing protein|
Version = NM_001066506.1 GI:115472744 GeneID:4343579|
Length = 5848 bp|
Definition = Oryza sativa Japonica Group Os07g0558000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:22927907..22933754|
CDS = 22929425..22929526,22929788..22929943,22931048..22931317,22931530..22932844,22933432..22933460 |
GCID = <gbrowseImage1>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctacggctggtggggatcggcgagaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataa</cdnaseq>|
AA = <aaseq>MLRLVGIGERLLAVGTNRRAAYFSQPSHRSGYYTAARDNGLSAK RKIPTVFSRMFSHYKVIVRKNKAGDHKCRNRISRGFRTFSGTVANSSATQHAQLAWKR LSHTYMYSGPRFPLISRAACALSFSFTRFHVVPGVMALAFGKFALSRPVLADSPHLPT MEGIVTNARDTRQFLSSIVWSIWEGVTLLIRAVHLAILFFPATALSPFADTFSVGFRR RWLRLVRRTLEIAGPAFIKWGQWAATRPDLFPSDLCVELAKLHSAAPAHGFAYSKATI EKAFGRKLSEIFETFEEEPVASGSIAQVHRATLRDQHTEKHVAVKVRHPGVGESIKKD FLLINLLAKASNVVPGLSWLRLDESVRQFAVFMMSQVDLSREAAHLSRFIYNFRRWRH VSFPKPLYPLVHPSVLVETFENGESVSRFMDEIEGNARMKRDLAHIGTYAFLKMLLED NFIHADMHPGNILVRLNERKPKRKLFFRPKPHIVFLDVGMTAELTRDDRDNLQQFFKA VATRDGRTAANCTLQLSKQQSCPNPVAFIEELDKTFSFWGTPEGDIFHPVECMHQLLD TVRRHKVNIDGNICTVMVTILVLEGWQRKLDPGFDIMHTLKTLLLDKDIKQPVDFFS</aaseq>|
DNA = <dnaseqindica>4229..4330#3812..3967#2438..2707#911..2225#295..323#gcgcaaatccgaaaagaaaaacaaaagaaaaaggaaaaaaaaggggggaaaactcaggaagacgactcctcgccgccgacctacccgagcgaggagcaccccggcgggcggcggcgcgtggcggatcgcgcgggttccggctccgagcctccccctcccctctctctctcctgggctcgtcgtagtcgcggcgggcgcgggaggtggtctccggcggcggcggggcgcgtggtatggtccgtggcggcggcgggggctcgaccacccggtgaagttttttttttcttctccccgatgctacggctggtggggatcggcgagaggtgcgtgtctcgattcggccctcccgtggcttcccgtccttgtttcagattgggtggatcgggggttccagatttcgttaggagcgggtcggtttttggcttaactctgcctacttgtggaagcagtatgtcacgtggcgaattcggtgctagttttagtttctcgatttgtaggggtatagcgcggaaattggtagctgtggcagtttggaacgttgagattgctaagatgaattttgggcatcaaatgtagcttaaattggagattggaggatattcatggaattgtacattgaggggagctagtgaaccttagccaacagagtgaccaatttgtgatttaatgaatgcattgtgcattgccgcaattgggaaattgtctgtatatatgcttgtttaaatgccatgtagttgggagaattagggaaataaagcaattggtgtcttacttactgaatacatcgtgtattgcattggctgtgctgaattcttaattttaactgttgttaaacatagggttctgacaggtgtcaattaaagcttgagaacccacaaattcttatgttctgttttacctttgtaagcaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggtatgcatgtttacttattatgtgtgtttccttctgttctccttttcacctgggtagtggtgtttgtatctgactgggtaggctggtattgaggattgcattcataagagcttcagtagtgtttaatactgattttttcccctaacatatggcacattgctcctattagaatttctgtcactaaagtttctgctatcaatatctgtctccaggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggtaaattctaaaactatgctgttggggaacatttagaatttcacatgctatgtttgattgcagatagcttcatttcttaatcaggtacttcatatatcatacacagaataggagtgtggtgaggttttgatgcaacttgtgtctgtctacatatacattacgatattagatggtgttagggaccttatacaacataaacaatcgcagaagtttcagttgttaggtttttggggctttggtttcagaacgtgacttcttcaataggctaatctttgctcgaagtagtcaccctttgtactgtataggcattttcatgtattggaatctgattttcttatcagtttagatctagatttgatgtacaaaatattgaaaactgtattactagatttcctattaagattaatttcataacgttatatgctaccacaattcactaaaacatgctagaattcatgcagctaaaactgttaattttatatccaaacaatgtagttttcatatatgacaaagttaaatgtattttttttattgaaaaactcttaatatttacacaaatgtaatgactttggaatatgtgagaatataacttagtggtcaaagtgttttgttgactttgaaaataaaaggagatgtatttttttgttttatctgtaggaattattattattacatatcgatacgaagttccaaaatgtaatggtcaaagtttcatccaaacttgaaaagtcagtaatgtcaaataaatactccctccaatttttaatgtatgatgttaacttttagacataggtttgaccattcgccttactcaatttttttgtgcaaatatgcaaaagtataagtcacacttaaagtatctttaatgataaaacaaaccacaacaaaataaatggtaattacatttttttaataagacgaacggtcaaacgtatgttcaaaagtcaacagcgtcatatattaaaaattggaggaagaacggaaggggtatagaactatagattgtattaccagcctttggctattgcatgttgatttctaaactattattgtcatttaggtacatatttgtttgcataataattatatttcttttattggtaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggtaaacttatacattgtaatgtttgaaatctataaaatatttaccatacgtcatttattggattatatatctctacaaaaggatgctcagataaactaatctagggaaatattacttactagtgggtgtggttagcacttagcaaccacctttttctatgttacaggctaatctgatatccattgcttcctaagacctgaatgtgcctacggaaagaaacacatcatgcttatttatacaaggctattaattcttttgtaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataaacaagttcatgctttcaagtgccaaatctacgagcctcaggtactgtgcatttgtgcaaacaagtcatcgtttcttttaagtacatttgtgcaaacaagtcaccgtttcttttaagtttgtcttcctctcttgaaatttttttggcatacttgttctgtacttgtgttaaaagaataatacacatgatgataaccagccttcaacattatcatgggaaatatggcttattttttagggaataaaaaagagaacttctttagtgatcagtaccccagtgggttatagcaagtacattcagagcaatatttctaaattaacctccaactgattaggtgactattctttatgataagaagttgggataccgtctcaattataccaaaaaaaggaggggggagggtgtcccatcttttgtggtggactggttggccaggagcagttggagaatccacttggatctccgctgcatatatgctgtcacggcatgtgtacgcttggcaacggtcattaacttgatgctggcatatagcctcgttagcaacctgaccgtgctttatactatcctttcctcgtttcatgcctcagtatccatgctaaactgaaattagccgcttggttattcagcaaaatcaacaatctaacctgtgcaatctctctccttgacagaatatgcatatatacagcagagaaaggtgatgacaccatgggacagaagttcgcaaaccaagcaatctatactaatgccttatgtcatgttatgttctctctctttttttttaaacaacctctctacctgcaacttacggcattgggtttcacatttgacaaccttcagtgctaaaattttgtccagcgccttggtggagtaagccaccaaaattccttgtgctaaaatctcttatcgagaaacaaaccctgttagatgtagcaaccgaatattgataacgagcagaattacgttgcagattatacagaattttacttcctgctatgctgctgcaatcttgatgtgaatcaacttctgcgagtgatgatagacatttataaatggcgtatcattatattagccgttgttaaactctctgcagggctgaatgattgggctggaggaccgaggacggtgtcctttcgggcttcagcttcagctctctttccatggttcacctgtgctttcgctgcggctgccggaggacgaagaagtgagaaaaggtgcccccaaaaggtctgtgtcctgtaggattagcaggatccactacaccgcaggttgagtcagtccagtgaggattgaggatatcatcgactcaggctttggtcgccggcggccgggaaagctggtatttgccgagctgattaaaagtaggccagcctttcagtttaggttaggtcctgacatttaataaaagagaacctcactacagttagttaacgatagtagtaacatggaggagtagtattgtcaagaaaaaaggtgcagactgtataatcatcatttagtaatgacaaactattttctctct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066506.1 RefSeq:Os07g0558000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0558000

2014-06-26T08:38:06Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0558000|
Description = ABC-1 domain containing protein|
Version = NM_001066506.1 GI:115472744 GeneID:4343579|
Length = 5848 bp|
Definition = Oryza sativa Japonica Group Os07g0558000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:22927907..22933754|
CDS = 22929425..22929526,22929788..22929943,22931048..22931317,22931530..22932844,22933432..22933460 |
GCID = <gbrowseImage1>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctacggctggtggggatcggcgagaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataa</cdnaseq>|
AA = <aaseq>MLRLVGIGERLLAVGTNRRAAYFSQPSHRSGYYTAARDNGLSAK RKIPTVFSRMFSHYKVIVRKNKAGDHKCRNRISRGFRTFSGTVANSSATQHAQLAWKR LSHTYMYSGPRFPLISRAACALSFSFTRFHVVPGVMALAFGKFALSRPVLADSPHLPT MEGIVTNARDTRQFLSSIVWSIWEGVTLLIRAVHLAILFFPATALSPFADTFSVGFRR RWLRLVRRTLEIAGPAFIKWGQWAATRPDLFPSDLCVELAKLHSAAPAHGFAYSKATI EKAFGRKLSEIFETFEEEPVASGSIAQVHRATLRDQHTEKHVAVKVRHPGVGESIKKD FLLINLLAKASNVVPGLSWLRLDESVRQFAVFMMSQVDLSREAAHLSRFIYNFRRWRH VSFPKPLYPLVHPSVLVETFENGESVSRFMDEIEGNARMKRDLAHIGTYAFLKMLLED NFIHADMHPGNILVRLNERKPKRKLFFRPKPHIVFLDVGMTAELTRDDRDNLQQFFKA VATRDGRTAANCTLQLSKQQSCPNPVAFIEELDKTFSFWGTPEGDIFHPVECMHQLLD TVRRHKVNIDGNICTVMVTILVLEGWQRKLDPGFDIMHTLKTLLLDKDIKQPVDFFS</aaseq>|
DNA = <dnaseqindica>4229..4330#3812..3967#2438..2707#911..2225#295..323#gcgcaaatccgaaaagaaaaacaaaagaaaaaggaaaaaaaaggggggaaaactcaggaagacgactcctcgccgccgacctacccgagcgaggagcaccccggcgggcggcggcgcgtggcggatcgcgcgggttccggctccgagcctccccctcccctctctctctcctgggctcgtcgtagtcgcggcgggcgcgggaggtggtctccggcggcggcggggcgcgtggtatggtccgtggcggcggcgggggctcgaccacccggtgaagttttttttttcttctccccgatgctacggctggtggggatcggcgagaggtgcgtgtctcgattcggccctcccgtggcttcccgtccttgtttcagattgggtggatcgggggttccagatttcgttaggagcgggtcggtttttggcttaactctgcctacttgtggaagcagtatgtcacgtggcgaattcggtgctagttttagtttctcgatttgtaggggtatagcgcggaaattggtagctgtggcagtttggaacgttgagattgctaagatgaattttgggcatcaaatgtagcttaaattggagattggaggatattcatggaattgtacattgaggggagctagtgaaccttagccaacagagtgaccaatttgtgatttaatgaatgcattgtgcattgccgcaattgggaaattgtctgtatatatgcttgtttaaatgccatgtagttgggagaattagggaaataaagcaattggtgtcttacttactgaatacatcgtgtattgcattggctgtgctgaattcttaattttaactgttgttaaacatagggttctgacaggtgtcaattaaagcttgagaacccacaaattcttatgttctgttttacctttgtaagcaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggtatgcatgtttacttattatgtgtgtttccttctgttctccttttcacctgggtagtggtgtttgtatctgactgggtaggctggtattgaggattgcattcataagagcttcagtagtgtttaatactgattttttcccctaacatatggcacattgctcctattagaatttctgtcactaaagtttctgctatcaatatctgtctccaggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggtaaattctaaaactatgctgttggggaacatttagaatttcacatgctatgtttgattgcagatagcttcatttcttaatcaggtacttcatatatcatacacagaataggagtgtggtgaggttttgatgcaacttgtgtctgtctacatatacattacgatattagatggtgttagggaccttatacaacataaacaatcgcagaagtttcagttgttaggtttttggggctttggtttcagaacgtgacttcttcaataggctaatctttgctcgaagtagtcaccctttgtactgtataggcattttcatgtattggaatctgattttcttatcagtttagatctagatttgatgtacaaaatattgaaaactgtattactagatttcctattaagattaatttcataacgttatatgctaccacaattcactaaaacatgctagaattcatgcagctaaaactgttaattttatatccaaacaatgtagttttcatatatgacaaagttaaatgtattttttttattgaaaaactcttaatatttacacaaatgtaatgactttggaatatgtgagaatataacttagtggtcaaagtgttttgttgactttgaaaataaaaggagatgtatttttttgttttatctgtaggaattattattattacatatcgatacgaagttccaaaatgtaatggtcaaagtttcatccaaacttgaaaagtcagtaatgtcaaataaatactccctccaatttttaatgtatgatgttaacttttagacataggtttgaccattcgccttactcaatttttttgtgcaaatatgcaaaagtataagtcacacttaaagtatctttaatgataaaacaaaccacaacaaaataaatggtaattacatttttttaataagacgaacggtcaaacgtatgttcaaaagtcaacagcgtcatatattaaaaattggaggaagaacggaaggggtatagaactatagattgtattaccagcctttggctattgcatgttgatttctaaactattattgtcatttaggtacatatttgtttgcataataattatatttcttttattggtaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggtaaacttatacattgtaatgtttgaaatctataaaatatttaccatacgtcatttattggattatatatctctacaaaaggatgctcagataaactaatctagggaaatattacttactagtgggtgtggttagcacttagcaaccacctttttctatgttacaggctaatctgatatccattgcttcctaagacctgaatgtgcctacggaaagaaacacatcatgcttatttatacaaggctattaattcttttgtaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataaacaagttcatgctttcaagtgccaaatctacgagcctcaggtactgtgcatttgtgcaaacaagtcatcgtttcttttaagtacatttgtgcaaacaagtcaccgtttcttttaagtttgtcttcctctcttgaaatttttttggcatacttgttctgtacttgtgttaaaagaataatacacatgatgataaccagccttcaacattatcatgggaaatatggcttattttttagggaataaaaaagagaacttctttagtgatcagtaccccagtgggttatagcaagtacattcagagcaatatttctaaattaacctccaactgattaggtgactattctttatgataagaagttgggataccgtctcaattataccaaaaaaaggaggggggagggtgtcccatcttttgtggtggactggttggccaggagcagttggagaatccacttggatctccgctgcatatatgctgtcacggcatgtgtacgcttggcaacggtcattaacttgatgctggcatatagcctcgttagcaacctgaccgtgctttatactatcctttcctcgtttcatgcctcagtatccatgctaaactgaaattagccgcttggttattcagcaaaatcaacaatctaacctgtgcaatctctctccttgacagaatatgcatatatacagcagagaaaggtgatgacaccatgggacagaagttcgcaaaccaagcaatctatactaatgccttatgtcatgttatgttctctctctttttttttaaacaacctctctacctgcaacttacggcattgggtttcacatttgacaaccttcagtgctaaaattttgtccagcgccttggtggagtaagccaccaaaattccttgtgctaaaatctcttatcgagaaacaaaccctgttagatgtagcaaccgaatattgataacgagcagaattacgttgcagattatacagaattttacttcctgctatgctgctgcaatcttgatgtgaatcaacttctgcgagtgatgatagacatttataaatggcgtatcattatattagccgttgttaaactctctgcagggctgaatgattgggctggaggaccgaggacggtgtcctttcgggcttcagcttcagctctctttccatggttcacctgtgctttcgctgcggctgccggaggacgaagaagtgagaaaaggtgcccccaaaaggtctgtgtcctgtaggattagcaggatccactacaccgcaggttgagtcagtccagtgaggattgaggatatcatcgactcaggctttggtcgccggcggccgggaaagctggtatttgccgagctgattaaaagtaggccagcctttcagtttaggttaggtcctgacatttaataaaagagaacctcactacagttagttaacgatagtagtaacatggaggagtagtattgtcaagaaaaaaggtgcagactgtataatcatcatttagtaatgacaaactattttctctct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066506.1 RefSeq:Os07g0558000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os07g0558000

2014-06-26T08:37:15Z

Littlescrew: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os07g0558000|
Description = ABC-1 domain containing protein|
Version = NM_001066506.1 GI:115472744 GeneID:4343579|
Length = 5848 bp|
Definition = Oryza sativa Japonica Group Os07g0558000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
AP = Chromosome 7:22927907..22933754|
CDS = 22929425..22929526,22929788..22929943,22931048..22931317,22931530..22932844,22933432..22933460 |
GCID = <gbrowseImage1>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008400:22927907..22933754
source=RiceChromosome07
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctacggctggtggggatcggcgagaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataa</cdnaseq>|
AA = <aaseq>MLRLVGIGERLLAVGTNRRAAYFSQPSHRSGYYTAARDNGLSAK RKIPTVFSRMFSHYKVIVRKNKAGDHKCRNRISRGFRTFSGTVANSSATQHAQLAWKR LSHTYMYSGPRFPLISRAACALSFSFTRFHVVPGVMALAFGKFALSRPVLADSPHLPT MEGIVTNARDTRQFLSSIVWSIWEGVTLLIRAVHLAILFFPATALSPFADTFSVGFRR RWLRLVRRTLEIAGPAFIKWGQWAATRPDLFPSDLCVELAKLHSAAPAHGFAYSKATI EKAFGRKLSEIFETFEEEPVASGSIAQVHRATLRDQHTEKHVAVKVRHPGVGESIKKD FLLINLLAKASNVVPGLSWLRLDESVRQFAVFMMSQVDLSREAAHLSRFIYNFRRWRH VSFPKPLYPLVHPSVLVETFENGESVSRFMDEIEGNARMKRDLAHIGTYAFLKMLLED NFIHADMHPGNILVRLNERKPKRKLFFRPKPHIVFLDVGMTAELTRDDRDNLQQFFKA VATRDGRTAANCTLQLSKQQSCPNPVAFIEELDKTFSFWGTPEGDIFHPVECMHQLLD TVRRHKVNIDGNICTVMVTILVLEGWQRKLDPGFDIMHTLKTLLLDKDIKQPVDFFS</aaseq>|
DNA = <dnaseqindica>4229..4330#3812..3967#2438..2707#911..2225#295..323#gcgcaaatccgaaaagaaaaacaaaagaaaaaggaaaaaaaaggggggaaaactcaggaagacgactcctcgccgccgacctacccgagcgaggagcaccccggcgggcggcggcgcgtggcggatcgcgcgggttccggctccgagcctccccctcccctctctctctcctgggctcgtcgtagtcgcggcgggcgcgggaggtggtctccggcggcggcggggcgcgtggtatggtccgtggcggcggcgggggctcgaccacccggtgaagttttttttttcttctccccgatgctacggctggtggggatcggcgagaggtgcgtgtctcgattcggccctcccgtggcttcccgtccttgtttcagattgggtggatcgggggttccagatttcgttaggagcgggtcggtttttggcttaactctgcctacttgtggaagcagtatgtcacgtggcgaattcggtgctagttttagtttctcgatttgtaggggtatagcgcggaaattggtagctgtggcagtttggaacgttgagattgctaagatgaattttgggcatcaaatgtagcttaaattggagattggaggatattcatggaattgtacattgaggggagctagtgaaccttagccaacagagtgaccaatttgtgatttaatgaatgcattgtgcattgccgcaattgggaaattgtctgtatatatgcttgtttaaatgccatgtagttgggagaattagggaaataaagcaattggtgtcttacttactgaatacatcgtgtattgcattggctgtgctgaattcttaattttaactgttgttaaacatagggttctgacaggtgtcaattaaagcttgagaacccacaaattcttatgttctgttttacctttgtaagcaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggtatgcatgtttacttattatgtgtgtttccttctgttctccttttcacctgggtagtggtgtttgtatctgactgggtaggctggtattgaggattgcattcataagagcttcagtagtgtttaatactgattttttcccctaacatatggcacattgctcctattagaatttctgtcactaaagtttctgctatcaatatctgtctccaggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggtaaattctaaaactatgctgttggggaacatttagaatttcacatgctatgtttgattgcagatagcttcatttcttaatcaggtacttcatatatcatacacagaataggagtgtggtgaggttttgatgcaacttgtgtctgtctacatatacattacgatattagatggtgttagggaccttatacaacataaacaatcgcagaagtttcagttgttaggtttttggggctttggtttcagaacgtgacttcttcaataggctaatctttgctcgaagtagtcaccctttgtactgtataggcattttcatgtattggaatctgattttcttatcagtttagatctagatttgatgtacaaaatattgaaaactgtattactagatttcctattaagattaatttcataacgttatatgctaccacaattcactaaaacatgctagaattcatgcagctaaaactgttaattttatatccaaacaatgtagttttcatatatgacaaagttaaatgtattttttttattgaaaaactcttaatatttacacaaatgtaatgactttggaatatgtgagaatataacttagtggtcaaagtgttttgttgactttgaaaataaaaggagatgtatttttttgttttatctgtaggaattattattattacatatcgatacgaagttccaaaatgtaatggtcaaagtttcatccaaacttgaaaagtcagtaatgtcaaataaatactccctccaatttttaatgtatgatgttaacttttagacataggtttgaccattcgccttactcaatttttttgtgcaaatatgcaaaagtataagtcacacttaaagtatctttaatgataaaacaaaccacaacaaaataaatggtaattacatttttttaataagacgaacggtcaaacgtatgttcaaaagtcaacagcgtcatatattaaaaattggaggaagaacggaaggggtatagaactatagattgtattaccagcctttggctattgcatgttgatttctaaactattattgtcatttaggtacatatttgtttgcataataattatatttcttttattggtaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggtaaacttatacattgtaatgtttgaaatctataaaatatttaccatacgtcatttattggattatatatctctacaaaaggatgctcagataaactaatctagggaaatattacttactagtgggtgtggttagcacttagcaaccacctttttctatgttacaggctaatctgatatccattgcttcctaagacctgaatgtgcctacggaaagaaacacatcatgcttatttatacaaggctattaattcttttgtaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataaacaagttcatgctttcaagtgccaaatctacgagcctcaggtactgtgcatttgtgcaaacaagtcatcgtttcttttaagtacatttgtgcaaacaagtcaccgtttcttttaagtttgtcttcctctcttgaaatttttttggcatacttgttctgtacttgtgttaaaagaataatacacatgatgataaccagccttcaacattatcatgggaaatatggcttattttttagggaataaaaaagagaacttctttagtgatcagtaccccagtgggttatagcaagtacattcagagcaatatttctaaattaacctccaactgattaggtgactattctttatgataagaagttgggataccgtctcaattataccaaaaaaaggaggggggagggtgtcccatcttttgtggtggactggttggccaggagcagttggagaatccacttggatctccgctgcatatatgctgtcacggcatgtgtacgcttggcaacggtcattaacttgatgctggcatatagcctcgttagcaacctgaccgtgctttatactatcctttcctcgtttcatgcctcagtatccatgctaaactgaaattagccgcttggttattcagcaaaatcaacaatctaacctgtgcaatctctctccttgacagaatatgcatatatacagcagagaaaggtgatgacaccatgggacagaagttcgcaaaccaagcaatctatactaatgccttatgtcatgttatgttctctctctttttttttaaacaacctctctacctgcaacttacggcattgggtttcacatttgacaaccttcagtgctaaaattttgtccagcgccttggtggagtaagccaccaaaattccttgtgctaaaatctcttatcgagaaacaaaccctgttagatgtagcaaccgaatattgataacgagcagaattacgttgcagattatacagaattttacttcctgctatgctgctgcaatcttgatgtgaatcaacttctgcgagtgatgatagacatttataaatggcgtatcattatattagccgttgttaaactctctgcagggctgaatgattgggctggaggaccgaggacggtgtcctttcgggcttcagcttcagctctctttccatggttcacctgtgctttcgctgcggctgccggaggacgaagaagtgagaaaaggtgcccccaaaaggtctgtgtcctgtaggattagcaggatccactacaccgcaggttgagtcagtccagtgaggattgaggatatcatcgactcaggctttggtcgccggcggccgggaaagctggtatttgccgagctgattaaaagtaggccagcctttcagtttaggttaggtcctgacatttaataaaagagaacctcactacagttagttaacgatagtagtaacatggaggagtagtattgtcaagaaaaaaggtgcagactgtataatcatcatttagtaatgacaaactattttctctct</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066506.1 RefSeq:Os07g0558000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 7]]
[[Category:Chromosome 7]]

Os09g0250700

2014-06-26T05:09:01Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
OsABC1-12 encodes a protein with 716 amino acids, and this gene locates in chromosome 9 with 18 extrons.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0250700|
Description = ABC-1 domain containing protein|
Version = NM_001069214.1 GI:115478167 GeneID:4346513|
Length = 7504 bp|
Definition = Oryza sativa Japonica Group Os09g0250700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:4421172..4428675|
CDS = 4421710..4422312,4422502..4422645,4422927..4423052,4423609..4423696,4423905..4423998 ,4424570..4424663,4425033..4425087,4425575..4425666,4425796..4425966 ,4426117..4426173,4426263..4426346,4426431..4426515,4426846..4426907 ,4427159..4427233,4427352..4427456,4427824..4427965,4428212..4428285 |
GCID = <gbrowseImage1>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaaggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaaaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccacttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataa</cdnaseq>|
AA = <aaseq>MAMMMADLSFSSSISNVKLQRFRASSNETSLIKRSPVFRAEARS TETEKFRTNGRAIKMVPTTELKRSKSGVRVRPDTVNGSPSGAVNGSTKVAINGSPNAA VNGSMKAVTNGSVNGTSLVKGSNMSALVKTQKRMRPNDDPFEEELKVLPSDEGFSWAK DNYNSWQRSADIWSFVLSFRIRVLFDNAKWAYAGGFSEEKQKVRRRKTASWLREQVLQ LGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKAFIEKEMGCPIEVVY KEFDNRPIAAASLGQVHRAVLHNGERVAVKVQRPGLRKLFDIDLRNLKLVAEYFQSSE AFGGPSRDWIGIYEECSKILYEEIDYINEGKNADRFRRDFRNIKWVRVPLIMWDYTTE KVLTLEYVPGIKINNLTLLDNRGYSRSLIASRSIESYLIQILKTGFFHADPHPGNLAI DTDGSLIYYDFGMMGEIKSFTRERLLSLFYAVYEKDANKVMKALIDLEALQATGDLSP VRRSIQFFLDNLLSQTPDQQQTLAAIGEDLFAISQDQPFRFPSTFTFVIRAFSTLEGI GYILDPDFSFVKVAAPYAQELLDLKQRRTSAPELVREIRKQANSARDSTISMPYRIQR IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAIGGTLLNVGVTLSSQGNQ IVANGSFVGAGIFLALLIRSMQRVKKLDKFETMI</aaseq>|
DNA = <dnaseqindica>539..1141#1331..1474#1756..1881#2438..2525#2734..2827#3399..3492#3862..3916#4404..4495#4625..4795#4946..5002#5092..5175#5260..5344#5675..5736#5988..6062#6181..6285#6653..6794#7041..7114#agtgaaggattagttgctgatgtatgcattgtttcttgggttttgtttctgggtcgatggaatggaatatagcaagaatgggctaatttggtggctgcttgctcctagttgttatgtcgatctgtgtttatagatgaattgacaagcagtttggagaaaaaaaatattcacattttgacagttaatttgtagttcgatcaggaattaatttttgatatttgctccttaatctgttggagtatgagcacttctcatgaatctctttggctaatccattccgaacaagatattagatgattttctaagaacgtctgctgaatatctgtatagcaattatgcaaccatgtggtgcctatgtaatccagtccttaatttcttggaaatggaaattgaattttatagtttaggacatttacacaattatctcaaggctttagtttcatttggtaggctggcatttcattgcaattacatttctttttgttctgctgtggatactgatgaggaaatgtttacgaacaggagcttttgattagccatggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacaggtatgcttttatggtacaaataagctttagttaaagaattctgcattccctttaaagtttcctatgcgaaagctttaccttttttgtggagtaactggtaattataatggatcacagagatttgggttgctaaaatgaaaagatatttattttttgtatgcgtggactaaatcatcccatatatcacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggtatttattttttgtgattccatatcaaattcttaatttatttgctaactctactgtgtttgtgttaacctccaactgctctagtattttctgtattcctcttgttgattttttagctctacagtaaactgattgtaatttcataataatgaatgaaaggacacaattattattgtaatgatgaccgacaagagaattatctatagtagtaaaccaaaatcaaaacagttcattagaacttagaaaagtatatatattgtaacttccggttttttgtgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtgcttagttttgcactctatcaaaacataaatctgatcttctcagtaccaatcagtgtatatcatactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatatcatacattttctatacattttttctatatcttactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatgaaagccaacagctgctgctagtcctctgcatgtttttgtttcaagttgtaaaattacacttcactatatgcttttcatatcgtattggccaatattttcttcactacatgtttctcatatctgtatatgtcaataaatgcctaccatttctgctcattctcacctgattcaggttgtcctttcctgttatactactggtccatgtttgttttttgaggggaaacagcgatacttattaataagctacaaaatttggtgtccttgacaatcttcatcctatcttctttatttataaataaaatctgcttacaggttccttcatatatattgttcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaagtaagagaaattattaccttttgacattctacccttttgcgtttgtttattatccttttactctttactatttttttctcaaaatatgataataacgtaatttaaaatgcttgtttttcaagaaaaaaattagatggctttaatatgaaataactcagttgttgtttaatgttgataatagttttgattattctttggaatcttgtagggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaagtaagtagcaatatagtcttcttggatcattgaatgtattctattgacttgatatttttattatttgacatctctagaatacatcccaaccttttctgccaaaaactttgttggaattgtgtggaataactagttccctaccatagcacctgatattgcaacctctatcgttcttcaaataaaaacagtagtacagtactacctcagtcccgaaatataaaggattttggcaatgcacctggataagtgtttgtcaaggtacgttatcagaacaccttatatttcgacggaggtagtattgcttatgctgttcaccatgtgagtccattattaaatcaataaatgaacctgtcctttggaggggaacaaagaccttgaatacgtcatagattgaggtataaggactaatggatggaagatatttggttagaaactttttgcaatatctgtagggctatgccaatttttgtttatttacagatttctgaaattattgtagcttccacagtccatatatttcttcagaaagtgagttgacataagaattgaccatcatgatttgtgatttcagaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccagtacgtttcttcaaactcaaaacacaacttgtttttgggttttgtttccatgcttgacttcgcttatatcttttaagaggccatatattaatctgcctagtcctgtttcaaacccatatttgtaatcaatctgattgtgtcgacattcttccaccaccatggcatcctcctataatcacctccttgatctcattgacatctgcatgaaaaccatggttagttgttaaaaaacatgcagcaatgtctttttttccccgtttattactgtagtgccatgtctcttgtcaacattgaaggcatcatttgggtgtgtgtggtgtgtctttttcctgaagttttacatgaataatcgttatgttatttttctagcttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtatgtgctagttatttcttgtaacagaaattagtatgtatagtgttgaattggactgactattgttctttggatagtttgtacataacaattatctcaatttcatttgttaattgctaatatatgaaaataaaattatgacagcattcaaaattagattatttattttaatgtgttcttatacttcctccatttcatggttgtcaaatccatattatcagtttcttgttattcaaatctgacaataaaatttctgtgcttcattaatctgattattttcatactcaagtattgctactacacatatttttccttctaaaatatacaattaagatctgacagtgattgtgagaggatggttgtcctttcaatcaaaacttggtagaatatgtttttttattaagagaatgcttttatttgtagaacctgctcttaccgcaactttatcttaactatttggctttactcaatctcttaatttttacaggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcaggtagatatatttcaagaatttgacttccgatggtttgtatattttttaatgctcaatgtctattagagacgagttgaatatcatttaatgtggtggttttcctctaaagttcttcattgtaccacacagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggtatctcaatattttcatacgaacagctcatatacagcaacatttctctctattttttatgattttacctagcatgctattgcaagttaagttgcccaaatcactaggcacttcatctttctctcagtctcattcagctctatcttgcaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggtttgtagaacattgtagttatcagatgggaattcctggaataattgcatttaaaatatgccctttcccccttttctttggttatttaggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggttgtctggccttacaattttcttaggattagctttataaactgggatattttagttaatatattatttttcttccctttgcaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaaggttctctttttctttatatatctatattccggagataattatcattatctgcatttctcttcttactattttttttgtcataaatcaatatcaaaggcaaatgtgtatctacctaatgctacaaaatatgtaaggttcactgatggaaaactaggctgttaataagatttgatgtctgttcaaacaatctgctaattgatcggcttttctaacttccctctgattgtgacatctctgttagtgtacaatattattatgtatgtgattgaccacggaaaagtttacatatttataggttaatgaccttgttgttataattatatttgatagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggttagaattattgtccatccttttattgtccctatatctgtattgtgtatttgggaagtgcattgatacaactattttagaaaagttagtgtatgtcaaaataaagtaactaataattcgaatcatacacgcttctttgttatttttgctgagacaattttctttctttcctttatcttagcagcgtagtcactatcttcagactttgcctgtgcatgcaatgctaatgaataatttattttgaacttcaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgtaaggacacaaatatttttctagtattccagtagatgtgcattttttcccttttgatctgcatattgtgacaatggcacatcatactgatcaatgttctgctgggtgtacatgacaggctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgaggtaagattattctggtaacaagttcttttactatctagcatcttgttaaggttgttggagattgataggaataaaaaaaacaatctgctttacacatttttgcattatgttaatgaatgattttaagcactaaaccgtctgtcatacataaatattcaatacttttaattaaaagaatatgcaagtattattcttgatggacagagaataactacaaaattattctttttttaatcccataccgatatttaccaaaagctcatccattcgcttgtttagcatcactacctgcaattatcagaaaactagtgcttcttttttggctgtcctgaatctgaaaacatgctgaacttaatgccattttcagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggtggggttctcttttttgtttggtgaactttgtttcatacattctccatatcattgcggacgattcagtcttttgttagtctttgttacttcttatgtgatatattactagaacatcgaggttgatccttttgatccgaaaatgtccaacttgatcaagctacttcatgcaggctctaaggatgtgaaaaaaaaagtacatgttcttgattcggtctaattgctgttcccaactgaaaccatgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataattgtcaacttgtcatatcattccaattggctttgctggaagctcataatctgtaccagaagcatggcaagacaatactccctctatcccaaaaagtgtccaactctagggattaatatacacacaccccctgtccttgtctagattcatcactagagttgaactctttttgggatagagtgaataggtcacctctcttttattctgtaaaaaaattacatgggggagtttatccctttatagccatacatatatagtttggtaggagatgccattcttttttttagaaaaaaacaatggaatcaacttgttacagcctgtaaatctgtacaattgtatcatttttgagccgtaaggtctctctcagaaatgaaacgaaatctaggtattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069214.1 RefSeq:Os09g0250700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0250700

2014-06-26T05:08:20Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
OsABC1-12 encodes a protein with 716 amino acids, and this gene locates in chromosome 9 with 18 extrons.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0250700|
Description = ABC-1 domain containing protein|
Version = NM_001069214.1 GI:115478167 GeneID:4346513|
Length = 7504 bp|
Definition = Oryza sativa Japonica Group Os09g0250700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:4421172..4428675|
CDS = 4421710..4422312,4422502..4422645,4422927..4423052,4423609..4423696,4423905..4423998 ,4424570..4424663,4425033..4425087,4425575..4425666,4425796..4425966 ,4426117..4426173,4426263..4426346,4426431..4426515,4426846..4426907 ,4427159..4427233,4427352..4427456,4427824..4427965,4428212..4428285 |
GCID = <gbrowseImage1>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaaggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaaaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccacttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataa</cdnaseq>|
AA = <aaseq>MAMMMADLSFSSSISNVKLQRFRASSNETSLIKRSPVFRAEARS TETEKFRTNGRAIKMVPTTELKRSKSGVRVRPDTVNGSPSGAVNGSTKVAINGSPNAA VNGSMKAVTNGSVNGTSLVKGSNMSALVKTQKRMRPNDDPFEEELKVLPSDEGFSWAK DNYNSWQRSADIWSFVLSFRIRVLFDNAKWAYAGGFSEEKQKVRRRKTASWLREQVLQ LGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKAFIEKEMGCPIEVVY KEFDNRPIAAASLGQVHRAVLHNGERVAVKVQRPGLRKLFDIDLRNLKLVAEYFQSSE AFGGPSRDWIGIYEECSKILYEEIDYINEGKNADRFRRDFRNIKWVRVPLIMWDYTTE KVLTLEYVPGIKINNLTLLDNRGYSRSLIASRSIESYLIQILKTGFFHADPHPGNLAI DTDGSLIYYDFGMMGEIKSFTRERLLSLFYAVYEKDANKVMKALIDLEALQATGDLSP VRRSIQFFLDNLLSQTPDQQQTLAAIGEDLFAISQDQPFRFPSTFTFVIRAFSTLEGI GYILDPDFSFVKVAAPYAQELLDLKQRRTSAPELVREIRKQANSARDSTISMPYRIQR IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAIGGTLLNVGVTLSSQGNQ IVANGSFVGAGIFLALLIRSMQRVKKLDKFETMI</aaseq>|
DNA = <dnaseqindica>539..1141#1331..1474#1756..1881#2438..2525#2734..2827#3399..3492#3862..3916#4404..4495#4625..4795#4946..5002#5092..5175#5260..5344#5675..5736#5988..6062#6181..6285#6653..6794#7041..7114#agtgaaggattagttgctgatgtatgcattgtttcttgggttttgtttctgggtcgatggaatggaatatagcaagaatgggctaatttggtggctgcttgctcctagttgttatgtcgatctgtgtttatagatgaattgacaagcagtttggagaaaaaaaatattcacattttgacagttaatttgtagttcgatcaggaattaatttttgatatttgctccttaatctgttggagtatgagcacttctcatgaatctctttggctaatccattccgaacaagatattagatgattttctaagaacgtctgctgaatatctgtatagcaattatgcaaccatgtggtgcctatgtaatccagtccttaatttcttggaaatggaaattgaattttatagtttaggacatttacacaattatctcaaggctttagtttcatttggtaggctggcatttcattgcaattacatttctttttgttctgctgtggatactgatgaggaaatgtttacgaacaggagcttttgattagccatggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacaggtatgcttttatggtacaaataagctttagttaaagaattctgcattccctttaaagtttcctatgcgaaagctttaccttttttgtggagtaactggtaattataatggatcacagagatttgggttgctaaaatgaaaagatatttattttttgtatgcgtggactaaatcatcccatatatcacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggtatttattttttgtgattccatatcaaattcttaatttatttgctaactctactgtgtttgtgttaacctccaactgctctagtattttctgtattcctcttgttgattttttagctctacagtaaactgattgtaatttcataataatgaatgaaaggacacaattattattgtaatgatgaccgacaagagaattatctatagtagtaaaccaaaatcaaaacagttcattagaacttagaaaagtatatatattgtaacttccggttttttgtgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtgcttagttttgcactctatcaaaacataaatctgatcttctcagtaccaatcagtgtatatcatactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatatcatacattttctatacattttttctatatcttactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatgaaagccaacagctgctgctagtcctctgcatgtttttgtttcaagttgtaaaattacacttcactatatgcttttcatatcgtattggccaatattttcttcactacatgtttctcatatctgtatatgtcaataaatgcctaccatttctgctcattctcacctgattcaggttgtcctttcctgttatactactggtccatgtttgttttttgaggggaaacagcgatacttattaataagctacaaaatttggtgtccttgacaatcttcatcctatcttctttatttataaataaaatctgcttacaggttccttcatatatattgttcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaagtaagagaaattattaccttttgacattctacccttttgcgtttgtttattatccttttactctttactatttttttctcaaaatatgataataacgtaatttaaaatgcttgtttttcaagaaaaaaattagatggctttaatatgaaataactcagttgttgtttaatgttgataatagttttgattattctttggaatcttgtagggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaagtaagtagcaatatagtcttcttggatcattgaatgtattctattgacttgatatttttattatttgacatctctagaatacatcccaaccttttctgccaaaaactttgttggaattgtgtggaataactagttccctaccatagcacctgatattgcaacctctatcgttcttcaaataaaaacagtagtacagtactacctcagtcccgaaatataaaggattttggcaatgcacctggataagtgtttgtcaaggtacgttatcagaacaccttatatttcgacggaggtagtattgcttatgctgttcaccatgtgagtccattattaaatcaataaatgaacctgtcctttggaggggaacaaagaccttgaatacgtcatagattgaggtataaggactaatggatggaagatatttggttagaaactttttgcaatatctgtagggctatgccaatttttgtttatttacagatttctgaaattattgtagcttccacagtccatatatttcttcagaaagtgagttgacataagaattgaccatcatgatttgtgatttcagaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccagtacgtttcttcaaactcaaaacacaacttgtttttgggttttgtttccatgcttgacttcgcttatatcttttaagaggccatatattaatctgcctagtcctgtttcaaacccatatttgtaatcaatctgattgtgtcgacattcttccaccaccatggcatcctcctataatcacctccttgatctcattgacatctgcatgaaaaccatggttagttgttaaaaaacatgcagcaatgtctttttttccccgtttattactgtagtgccatgtctcttgtcaacattgaaggcatcatttgggtgtgtgtggtgtgtctttttcctgaagttttacatgaataatcgttatgttatttttctagcttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtatgtgctagttatttcttgtaacagaaattagtatgtatagtgttgaattggactgactattgttctttggatagtttgtacataacaattatctcaatttcatttgttaattgctaatatatgaaaataaaattatgacagcattcaaaattagattatttattttaatgtgttcttatacttcctccatttcatggttgtcaaatccatattatcagtttcttgttattcaaatctgacaataaaatttctgtgcttcattaatctgattattttcatactcaagtattgctactacacatatttttccttctaaaatatacaattaagatctgacagtgattgtgagaggatggttgtcctttcaatcaaaacttggtagaatatgtttttttattaagagaatgcttttatttgtagaacctgctcttaccgcaactttatcttaactatttggctttactcaatctcttaatttttacaggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcaggtagatatatttcaagaatttgacttccgatggtttgtatattttttaatgctcaatgtctattagagacgagttgaatatcatttaatgtggtggttttcctctaaagttcttcattgtaccacacagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggtatctcaatattttcatacgaacagctcatatacagcaacatttctctctattttttatgattttacctagcatgctattgcaagttaagttgcccaaatcactaggcacttcatctttctctcagtctcattcagctctatcttgcaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggtttgtagaacattgtagttatcagatgggaattcctggaataattgcatttaaaatatgccctttcccccttttctttggttatttaggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggttgtctggccttacaattttcttaggattagctttataaactgggatattttagttaatatattatttttcttccctttgcaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaaggttctctttttctttatatatctatattccggagataattatcattatctgcatttctcttcttactattttttttgtcataaatcaatatcaaaggcaaatgtgtatctacctaatgctacaaaatatgtaaggttcactgatggaaaactaggctgttaataagatttgatgtctgttcaaacaatctgctaattgatcggcttttctaacttccctctgattgtgacatctctgttagtgtacaatattattatgtatgtgattgaccacggaaaagtttacatatttataggttaatgaccttgttgttataattatatttgatagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggttagaattattgtccatccttttattgtccctatatctgtattgtgtatttgggaagtgcattgatacaactattttagaaaagttagtgtatgtcaaaataaagtaactaataattcgaatcatacacgcttctttgttatttttgctgagacaattttctttctttcctttatcttagcagcgtagtcactatcttcagactttgcctgtgcatgcaatgctaatgaataatttattttgaacttcaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgtaaggacacaaatatttttctagtattccagtagatgtgcattttttcccttttgatctgcatattgtgacaatggcacatcatactgatcaatgttctgctgggtgtacatgacaggctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgaggtaagattattctggtaacaagttcttttactatctagcatcttgttaaggttgttggagattgataggaataaaaaaaacaatctgctttacacatttttgcattatgttaatgaatgattttaagcactaaaccgtctgtcatacataaatattcaatacttttaattaaaagaatatgcaagtattattcttgatggacagagaataactacaaaattattctttttttaatcccataccgatatttaccaaaagctcatccattcgcttgtttagcatcactacctgcaattatcagaaaactagtgcttcttttttggctgtcctgaatctgaaaacatgctgaacttaatgccattttcagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggtggggttctcttttttgtttggtgaactttgtttcatacattctccatatcattgcggacgattcagtcttttgttagtctttgttacttcttatgtgatatattactagaacatcgaggttgatccttttgatccgaaaatgtccaacttgatcaagctacttcatgcaggctctaaggatgtgaaaaaaaaagtacatgttcttgattcggtctaattgctgttcccaactgaaaccatgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataattgtcaacttgtcatatcattccaattggctttgctggaagctcataatctgtaccagaagcatggcaagacaatactccctctatcccaaaaagtgtccaactctagggattaatatacacacaccccctgtccttgtctagattcatcactagagttgaactctttttgggatagagtgaataggtcacctctcttttattctgtaaaaaaattacatgggggagtttatccctttatagccatacatatatagtttggtaggagatgccattcttttttttagaaaaaaacaatggaatcaacttgttacagcctgtaaatctgtacaattgtatcatttttgagccgtaaggtctctctcagaaatgaaacgaaatctaggtattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069214.1 RefSeq:Os09g0250700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0250700

2014-06-26T05:07:35Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
OsABC1-12 encodes a protein with 716 amino acids, and this gene locates in chromosome 9 with 18 extrons.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0250700|
Description = ABC-1 domain containing protein|
Version = NM_001069214.1 GI:115478167 GeneID:4346513|
Length = 7504 bp|
Definition = Oryza sativa Japonica Group Os09g0250700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:4421172..4428675|
CDS = 4421710..4422312,4422502..4422645,4422927..4423052,4423609..4423696,4423905..4423998 ,4424570..4424663,4425033..4425087,4425575..4425666,4425796..4425966 ,4426117..4426173,4426263..4426346,4426431..4426515,4426846..4426907 ,4427159..4427233,4427352..4427456,4427824..4427965,4428212..4428285 |
GCID = <gbrowseImage1>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:4421172..4428675
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaaggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaaaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccacttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataa</cdnaseq>|
AA = <aaseq>MAMMMADLSFSSSISNVKLQRFRASSNETSLIKRSPVFRAEARS TETEKFRTNGRAIKMVPTTELKRSKSGVRVRPDTVNGSPSGAVNGSTKVAINGSPNAA VNGSMKAVTNGSVNGTSLVKGSNMSALVKTQKRMRPNDDPFEEELKVLPSDEGFSWAK DNYNSWQRSADIWSFVLSFRIRVLFDNAKWAYAGGFSEEKQKVRRRKTASWLREQVLQ LGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKAFIEKEMGCPIEVVY KEFDNRPIAAASLGQVHRAVLHNGERVAVKVQRPGLRKLFDIDLRNLKLVAEYFQSSE AFGGPSRDWIGIYEECSKILYEEIDYINEGKNADRFRRDFRNIKWVRVPLIMWDYTTE KVLTLEYVPGIKINNLTLLDNRGYSRSLIASRSIESYLIQILKTGFFHADPHPGNLAI DTDGSLIYYDFGMMGEIKSFTRERLLSLFYAVYEKDANKVMKALIDLEALQATGDLSP VRRSIQFFLDNLLSQTPDQQQTLAAIGEDLFAISQDQPFRFPSTFTFVIRAFSTLEGI GYILDPDFSFVKVAAPYAQELLDLKQRRTSAPELVREIRKQANSARDSTISMPYRIQR IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAIGGTLLNVGVTLSSQGNQ IVANGSFVGAGIFLALLIRSMQRVKKLDKFETMI</aaseq>|
DNA = <dnaseqindica>539..1141#1331..1474#1756..1881#2438..2525#2734..2827#3399..3492#3862..3916#4404..4495#4625..4795#4946..5002#5092..5175#5260..5344#5675..5736#5988..6062#6181..6285#6653..6794#7041..7114#agtgaaggattagttgctgatgtatgcattgtttcttgggttttgtttctgggtcgatggaatggaatatagcaagaatgggctaatttggtggctgcttgctcctagttgttatgtcgatctgtgtttatagatgaattgacaagcagtttggagaaaaaaaatattcacattttgacagttaatttgtagttcgatcaggaattaatttttgatatttgctccttaatctgttggagtatgagcacttctcatgaatctctttggctaatccattccgaacaagatattagatgattttctaagaacgtctgctgaatatctgtatagcaattatgcaaccatgtggtgcctatgtaatccagtccttaatttcttggaaatggaaattgaattttatagtttaggacatttacacaattatctcaaggctttagtttcatttggtaggctggcatttcattgcaattacatttctttttgttctgctgtggatactgatgaggaaatgtttacgaacaggagcttttgattagccatggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacaggtatgcttttatggtacaaataagctttagttaaagaattctgcattccctttaaagtttcctatgcgaaagctttaccttttttgtggagtaactggtaattataatggatcacagagatttgggttgctaaaatgaaaagatatttattttttgtatgcgtggactaaatcatcccatatatcacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggtatttattttttgtgattccatatcaaattcttaatttatttgctaactctactgtgtttgtgttaacctccaactgctctagtattttctgtattcctcttgttgattttttagctctacagtaaactgattgtaatttcataataatgaatgaaaggacacaattattattgtaatgatgaccgacaagagaattatctatagtagtaaaccaaaatcaaaacagttcattagaacttagaaaagtatatatattgtaacttccggttttttgtgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtgcttagttttgcactctatcaaaacataaatctgatcttctcagtaccaatcagtgtatatcatactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatatcatacattttctatacattttttctatatcttactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatgaaagccaacagctgctgctagtcctctgcatgtttttgtttcaagttgtaaaattacacttcactatatgcttttcatatcgtattggccaatattttcttcactacatgtttctcatatctgtatatgtcaataaatgcctaccatttctgctcattctcacctgattcaggttgtcctttcctgttatactactggtccatgtttgttttttgaggggaaacagcgatacttattaataagctacaaaatttggtgtccttgacaatcttcatcctatcttctttatttataaataaaatctgcttacaggttccttcatatatattgttcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaagtaagagaaattattaccttttgacattctacccttttgcgtttgtttattatccttttactctttactatttttttctcaaaatatgataataacgtaatttaaaatgcttgtttttcaagaaaaaaattagatggctttaatatgaaataactcagttgttgtttaatgttgataatagttttgattattctttggaatcttgtagggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaagtaagtagcaatatagtcttcttggatcattgaatgtattctattgacttgatatttttattatttgacatctctagaatacatcccaaccttttctgccaaaaactttgttggaattgtgtggaataactagttccctaccatagcacctgatattgcaacctctatcgttcttcaaataaaaacagtagtacagtactacctcagtcccgaaatataaaggattttggcaatgcacctggataagtgtttgtcaaggtacgttatcagaacaccttatatttcgacggaggtagtattgcttatgctgttcaccatgtgagtccattattaaatcaataaatgaacctgtcctttggaggggaacaaagaccttgaatacgtcatagattgaggtataaggactaatggatggaagatatttggttagaaactttttgcaatatctgtagggctatgccaatttttgtttatttacagatttctgaaattattgtagcttccacagtccatatatttcttcagaaagtgagttgacataagaattgaccatcatgatttgtgatttcagaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccagtacgtttcttcaaactcaaaacacaacttgtttttgggttttgtttccatgcttgacttcgcttatatcttttaagaggccatatattaatctgcctagtcctgtttcaaacccatatttgtaatcaatctgattgtgtcgacattcttccaccaccatggcatcctcctataatcacctccttgatctcattgacatctgcatgaaaaccatggttagttgttaaaaaacatgcagcaatgtctttttttccccgtttattactgtagtgccatgtctcttgtcaacattgaaggcatcatttgggtgtgtgtggtgtgtctttttcctgaagttttacatgaataatcgttatgttatttttctagcttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtatgtgctagttatttcttgtaacagaaattagtatgtatagtgttgaattggactgactattgttctttggatagtttgtacataacaattatctcaatttcatttgttaattgctaatatatgaaaataaaattatgacagcattcaaaattagattatttattttaatgtgttcttatacttcctccatttcatggttgtcaaatccatattatcagtttcttgttattcaaatctgacaataaaatttctgtgcttcattaatctgattattttcatactcaagtattgctactacacatatttttccttctaaaatatacaattaagatctgacagtgattgtgagaggatggttgtcctttcaatcaaaacttggtagaatatgtttttttattaagagaatgcttttatttgtagaacctgctcttaccgcaactttatcttaactatttggctttactcaatctcttaatttttacaggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcaggtagatatatttcaagaatttgacttccgatggtttgtatattttttaatgctcaatgtctattagagacgagttgaatatcatttaatgtggtggttttcctctaaagttcttcattgtaccacacagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggtatctcaatattttcatacgaacagctcatatacagcaacatttctctctattttttatgattttacctagcatgctattgcaagttaagttgcccaaatcactaggcacttcatctttctctcagtctcattcagctctatcttgcaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggtttgtagaacattgtagttatcagatgggaattcctggaataattgcatttaaaatatgccctttcccccttttctttggttatttaggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggttgtctggccttacaattttcttaggattagctttataaactgggatattttagttaatatattatttttcttccctttgcaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaaggttctctttttctttatatatctatattccggagataattatcattatctgcatttctcttcttactattttttttgtcataaatcaatatcaaaggcaaatgtgtatctacctaatgctacaaaatatgtaaggttcactgatggaaaactaggctgttaataagatttgatgtctgttcaaacaatctgctaattgatcggcttttctaacttccctctgattgtgacatctctgttagtgtacaatattattatgtatgtgattgaccacggaaaagtttacatatttataggttaatgaccttgttgttataattatatttgatagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggttagaattattgtccatccttttattgtccctatatctgtattgtgtatttgggaagtgcattgatacaactattttagaaaagttagtgtatgtcaaaataaagtaactaataattcgaatcatacacgcttctttgttatttttgctgagacaattttctttctttcctttatcttagcagcgtagtcactatcttcagactttgcctgtgcatgcaatgctaatgaataatttattttgaacttcaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgtaaggacacaaatatttttctagtattccagtagatgtgcattttttcccttttgatctgcatattgtgacaatggcacatcatactgatcaatgttctgctgggtgtacatgacaggctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgaggtaagattattctggtaacaagttcttttactatctagcatcttgttaaggttgttggagattgataggaataaaaaaaacaatctgctttacacatttttgcattatgttaatgaatgattttaagcactaaaccgtctgtcatacataaatattcaatacttttaattaaaagaatatgcaagtattattcttgatggacagagaataactacaaaattattctttttttaatcccataccgatatttaccaaaagctcatccattcgcttgtttagcatcactacctgcaattatcagaaaactagtgcttcttttttggctgtcctgaatctgaaaacatgctgaacttaatgccattttcagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggtggggttctcttttttgtttggtgaactttgtttcatacattctccatatcattgcggacgattcagtcttttgttagtctttgttacttcttatgtgatatattactagaacatcgaggttgatccttttgatccgaaaatgtccaacttgatcaagctacttcatgcaggctctaaggatgtgaaaaaaaaagtacatgttcttgattcggtctaattgctgttcccaactgaaaccatgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataattgtcaacttgtcatatcattccaattggctttgctggaagctcataatctgtaccagaagcatggcaagacaatactccctctatcccaaaaagtgtccaactctagggattaatatacacacaccccctgtccttgtctagattcatcactagagttgaactctttttgggatagagtgaataggtcacctctcttttattctgtaaaaaaattacatgggggagtttatccctttatagccatacatatatagtttggtaggagatgccattcttttttttagaaaaaaacaatggaatcaacttgttacagcctgtaaatctgtacaattgtatcatttttgagccgtaaggtctctctcagaaatgaaacgaaatctaggtattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069214.1 RefSeq:Os09g0250700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os11g0216300

2014-06-26T05:03:24Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-13'' contains 15 extrons, locates in chromosome 11, and encodes a protein with 675 amino acids.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0216300|
Description = ABC-1 domain containing protein|
Version = NM_001074041.1 GI:115484730 GeneID:4350081|
Length = 5518 bp|
Definition = Oryza sativa Japonica Group Os11g0216300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:6051169..6056686|
CDS = 6051510..6051580,6051662..6051731,6051842..6051989,6052066..6052178,6052441..6052512 ,6052603..6052730,6053036..6053231,6053504..6053683,6053778..6053918 ,6054154..6054318,6054698..6054844,6054951..6055040,6055163..6055369 ,6055452..6055774,6056531..6056684|
GCID = <gbrowseImage1>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>tgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccgggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactga</cdnaseq>|
AA = <aaseq>CFSLSCPHPWLRVLSLCHHKSRAFSPPKSWKISAAVVRAPQSPA RPRISGKDTVYRPLSMELCTSSVSGSVQWSRISAFDCRTRSHGYASSSSWVCQRRRKT SFYVMNAASTGALPPTKKLIPRTNVRNISGDKPSSALEQLDIERGVCIPFRKYTPEMV RNRVLGSRGSVLSLASRGVEIIWKLGLYWSALMYDFLVGRDEEIVPFRARQLRNLLCD LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNQVAFSIIEEELGQPLERLF SRISSRTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI SLQKLGCNAELIVDEFGEKLLEELDYTLEATNIEDFLENFKDDPTVKIPQVYKQYSGS RVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVSAALRQLLEFGLFHGDPHPGNIFA MRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVSP IVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGIC FTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKEN VSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLIDAGIRRQLIMAFTEDS KLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDSILSDRQY</aaseq>|
DNA = <dnaseqindica>5107..5177#4956..5025#4698..4845#4509..4621#4175..4246#3957..4084#3456..3651#3004..3183#2769..2909#2369..2533#1843..1989#1647..1736#1318..1524#913..1235#3..156#attgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaaggtgagaattttcttgcccccacccgcgccgtgcccccgtgccgtcttcttggggttgggggtggttccccattcggatgaactgtgcttgttcgagtgatttgcgtgtgcagatatgattttttggttttttttgttttgggctgtttcaattcactgcggtagaggtcttgctactcctagacggtttgtggttgcttcctagtccttcttcttctcctctggccagcgaattcaattctccggcgaggtcgatccgtgctcgcgcaggttggggccatgttggacctccgcatcaggtttgggggtgggagtgagggcgccgggtcggtcgcgttctggatgtggatcccgccgccgcactcgctggcgtcggaggtgatctcgtggaggagcatatggcgtggtggaagtgggcgagcttgacggcgagctgggctgcattaggtggtgggcagcgcggcggcgcccatgggtgtaggttatcacgctcggatgctcttacaagacgcctccaagaactcaatttgtggttctgaacttctctgaaaaaagaagtctgttggttgtaaattgggaagggcaattcatgttgaataacagcaaataggggtgagctcagggagtgataattagtgatttgtttttctcctcaattgaattttaggaagtagggttatagtgttttctgtagctagggatttgacattggagattatatttcaagtgtgatgatgtagcttgttattttgtccagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtattgaacacttcaaatggttatatttacagggttagttttctgaaatccgttgtaaatatgctcatttccaaattgctaggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttatattcttctctttctgataaatccctaaatctcccaagacgataacactccaaatatctctgctgcttcctttgtatattacagtccttaatgcatttggtcccattgtttttgttaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtacatgtgtactgtaaaaattccatgcatgtttgtggaagattatacttactaggactgcggaggcatcaggatgattaacttagcttattgatcgaattgacaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcatgtttgcttcattttcttgtatttgtttactactttagtactttatttcttttgtgatttgagatgatcgaaaagttctatgacttgatgcttcatttttaccatggtcctctatctctatcatggcccatggatgagtacaagcgtgtttctcaccctaatgaaattcgtgaccattttacaccttatgagttgtgaaaaagaatttagttaaatgtttatacatgcttcagtagaatgtccagtcgccgactctatcagtagtgtcttggactagtagtttgtgacatttttaatgtttgttcttgtactcatgcataatataatgtttattgttgtgcttatttattgattactgtgattcaaaataacaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgtaagctttttgttcctttttattggtgttattatgttctcaacataatgaattagctattggacagtaggtatcacaatcttacatgtgttgtcaatggtgtccactttcttttgttgggaagacagtaccggaaaagagaaaacaatttcattgacaaactcttatatctctcatggcttattttgtcatggatggaatgttgacgtgctttctattccatacaatgctttaggaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggtttgtagcattatttctagttttttttatcaaaggtgaaatagttcagtgtaatttttctcgtgtttttgagtccaaaagtttatttgtacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcaggtatgaaatattgctttttagcagtggtaaaattcatctttgaatttttcagttaattggattagtaatattttttgtcaatactcaatttgataaataatatctgattcatgcctactatgaaaaaaaaatcgattctatagtaaataatgtacattggtcatttacagtcctgcaatctgttaaaactgcagaaatatatcttatcaggcctgttggctaaaacagaaattggctaacaggttgttctgctattgttttcctatgtgcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccggtaaggctgtaatgcttcgcagtttatctattaccgagaactggatgtgtgcttgctttgttcttcatgatctatatcagcattttttttcaatgcatggtcatcaaattatattactgctgaaggtggacatttctgatcatgattcatggatattattttgatggcattccttgtggcacccacacttgttagaatgtttgcttgattatttttgttctattaatcatgaatgcttaggataagactgctttctatattcatatatatttcatcctctaatttatttataaccaaatttatagggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggtgtgacatgtgccattcttttcagttctcaagaaagaaaaaaaatgtgtgatcagttctcaccgttcactgtgctgtttcaatatccaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtaaccagtcaaggcctccttaacactactgcaaagctattgtccattggtagtttctaccatatgatccaccattgtatatgtgaaagtgtggaataaagcatcagtgcagaaaataaacagcaagtttgttctgtcaaactacaggaaagaagcatgttttagcatttaaatggttgacaattgtgtgacatgccattatttatttttaaaaaagacttttaccacttatgtcgtcaccatgttttttttccctatgaaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgtgagtatcagaactgtctgttctataacgctctaaatcttatttctagaaatactctgatcttgtgaaccactaggcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagaggtactttaacatggattgttcactacagtattcacacaagttgtatactaaggaaagatggaagataatttttccagtggattactgtaacccatttctctcttttgcagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaaggtaagtcagtcgacctatgttagttggaaaaactctcctgttcttccatttgaaatgcatttactttacttttctgtgcagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactgatctcaggttaacagtttagagcagcaagcagaagtgctgtcaagacctgcaggagccattcttccttcagttaacctacactaaaatagatagatatagatgactacatttttcctctttgctgtacacaatttggtttgctattcttttctatagtatatcattgtataggaaacttgccatctgcatttcatttatatattttcgatggctctgtatatgccgtttgtatagcggaagaaaaggaacttgtatatagaatgagcttgtattgtgggagaaagtagctatatgtgtacatcgaggaaacttacattataagatcagatcatatgttttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074041.1 RefSeq:Os11g0216300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0216300

2014-06-26T05:00:48Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0216300|
Description = ABC-1 domain containing protein|
Version = NM_001074041.1 GI:115484730 GeneID:4350081|
Length = 5518 bp|
Definition = Oryza sativa Japonica Group Os11g0216300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:6051169..6056686|
CDS = 6051510..6051580,6051662..6051731,6051842..6051989,6052066..6052178,6052441..6052512 ,6052603..6052730,6053036..6053231,6053504..6053683,6053778..6053918 ,6054154..6054318,6054698..6054844,6054951..6055040,6055163..6055369 ,6055452..6055774,6056531..6056684|
GCID = <gbrowseImage1>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>tgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccgggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactga</cdnaseq>|
AA = <aaseq>CFSLSCPHPWLRVLSLCHHKSRAFSPPKSWKISAAVVRAPQSPA RPRISGKDTVYRPLSMELCTSSVSGSVQWSRISAFDCRTRSHGYASSSSWVCQRRRKT SFYVMNAASTGALPPTKKLIPRTNVRNISGDKPSSALEQLDIERGVCIPFRKYTPEMV RNRVLGSRGSVLSLASRGVEIIWKLGLYWSALMYDFLVGRDEEIVPFRARQLRNLLCD LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNQVAFSIIEEELGQPLERLF SRISSRTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI SLQKLGCNAELIVDEFGEKLLEELDYTLEATNIEDFLENFKDDPTVKIPQVYKQYSGS RVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVSAALRQLLEFGLFHGDPHPGNIFA MRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVSP IVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGIC FTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKEN VSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLIDAGIRRQLIMAFTEDS KLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDSILSDRQY</aaseq>|
DNA = <dnaseqindica>5107..5177#4956..5025#4698..4845#4509..4621#4175..4246#3957..4084#3456..3651#3004..3183#2769..2909#2369..2533#1843..1989#1647..1736#1318..1524#913..1235#3..156#attgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaaggtgagaattttcttgcccccacccgcgccgtgcccccgtgccgtcttcttggggttgggggtggttccccattcggatgaactgtgcttgttcgagtgatttgcgtgtgcagatatgattttttggttttttttgttttgggctgtttcaattcactgcggtagaggtcttgctactcctagacggtttgtggttgcttcctagtccttcttcttctcctctggccagcgaattcaattctccggcgaggtcgatccgtgctcgcgcaggttggggccatgttggacctccgcatcaggtttgggggtgggagtgagggcgccgggtcggtcgcgttctggatgtggatcccgccgccgcactcgctggcgtcggaggtgatctcgtggaggagcatatggcgtggtggaagtgggcgagcttgacggcgagctgggctgcattaggtggtgggcagcgcggcggcgcccatgggtgtaggttatcacgctcggatgctcttacaagacgcctccaagaactcaatttgtggttctgaacttctctgaaaaaagaagtctgttggttgtaaattgggaagggcaattcatgttgaataacagcaaataggggtgagctcagggagtgataattagtgatttgtttttctcctcaattgaattttaggaagtagggttatagtgttttctgtagctagggatttgacattggagattatatttcaagtgtgatgatgtagcttgttattttgtccagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtattgaacacttcaaatggttatatttacagggttagttttctgaaatccgttgtaaatatgctcatttccaaattgctaggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttatattcttctctttctgataaatccctaaatctcccaagacgataacactccaaatatctctgctgcttcctttgtatattacagtccttaatgcatttggtcccattgtttttgttaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtacatgtgtactgtaaaaattccatgcatgtttgtggaagattatacttactaggactgcggaggcatcaggatgattaacttagcttattgatcgaattgacaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcatgtttgcttcattttcttgtatttgtttactactttagtactttatttcttttgtgatttgagatgatcgaaaagttctatgacttgatgcttcatttttaccatggtcctctatctctatcatggcccatggatgagtacaagcgtgtttctcaccctaatgaaattcgtgaccattttacaccttatgagttgtgaaaaagaatttagttaaatgtttatacatgcttcagtagaatgtccagtcgccgactctatcagtagtgtcttggactagtagtttgtgacatttttaatgtttgttcttgtactcatgcataatataatgtttattgttgtgcttatttattgattactgtgattcaaaataacaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgtaagctttttgttcctttttattggtgttattatgttctcaacataatgaattagctattggacagtaggtatcacaatcttacatgtgttgtcaatggtgtccactttcttttgttgggaagacagtaccggaaaagagaaaacaatttcattgacaaactcttatatctctcatggcttattttgtcatggatggaatgttgacgtgctttctattccatacaatgctttaggaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggtttgtagcattatttctagttttttttatcaaaggtgaaatagttcagtgtaatttttctcgtgtttttgagtccaaaagtttatttgtacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcaggtatgaaatattgctttttagcagtggtaaaattcatctttgaatttttcagttaattggattagtaatattttttgtcaatactcaatttgataaataatatctgattcatgcctactatgaaaaaaaaatcgattctatagtaaataatgtacattggtcatttacagtcctgcaatctgttaaaactgcagaaatatatcttatcaggcctgttggctaaaacagaaattggctaacaggttgttctgctattgttttcctatgtgcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccggtaaggctgtaatgcttcgcagtttatctattaccgagaactggatgtgtgcttgctttgttcttcatgatctatatcagcattttttttcaatgcatggtcatcaaattatattactgctgaaggtggacatttctgatcatgattcatggatattattttgatggcattccttgtggcacccacacttgttagaatgtttgcttgattatttttgttctattaatcatgaatgcttaggataagactgctttctatattcatatatatttcatcctctaatttatttataaccaaatttatagggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggtgtgacatgtgccattcttttcagttctcaagaaagaaaaaaaatgtgtgatcagttctcaccgttcactgtgctgtttcaatatccaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtaaccagtcaaggcctccttaacactactgcaaagctattgtccattggtagtttctaccatatgatccaccattgtatatgtgaaagtgtggaataaagcatcagtgcagaaaataaacagcaagtttgttctgtcaaactacaggaaagaagcatgttttagcatttaaatggttgacaattgtgtgacatgccattatttatttttaaaaaagacttttaccacttatgtcgtcaccatgttttttttccctatgaaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgtgagtatcagaactgtctgttctataacgctctaaatcttatttctagaaatactctgatcttgtgaaccactaggcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagaggtactttaacatggattgttcactacagtattcacacaagttgtatactaaggaaagatggaagataatttttccagtggattactgtaacccatttctctcttttgcagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaaggtaagtcagtcgacctatgttagttggaaaaactctcctgttcttccatttgaaatgcatttactttacttttctgtgcagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactgatctcaggttaacagtttagagcagcaagcagaagtgctgtcaagacctgcaggagccattcttccttcagttaacctacactaaaatagatagatatagatgactacatttttcctctttgctgtacacaatttggtttgctattcttttctatagtatatcattgtataggaaacttgccatctgcatttcatttatatattttcgatggctctgtatatgccgtttgtatagcggaagaaaaggaacttgtatatagaatgagcttgtattgtgggagaaagtagctatatgtgtacatcgaggaaacttacattataagatcagatcatatgttttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074041.1 RefSeq:Os11g0216300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0216300

2014-06-26T05:00:05Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0216300|
Description = ABC-1 domain containing protein|
Version = NM_001074041.1 GI:115484730 GeneID:4350081|
Length = 5518 bp|
Definition = Oryza sativa Japonica Group Os11g0216300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:6051169..6056686|
CDS = 6051510..6051580,6051662..6051731,6051842..6051989,6052066..6052178,6052441..6052512 ,6052603..6052730,6053036..6053231,6053504..6053683,6053778..6053918 ,6054154..6054318,6054698..6054844,6054951..6055040,6055163..6055369 ,6055452..6055774,6056531..6056684|
GCID = <gbrowseImage1>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>tgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccgggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactga</cdnaseq>|
AA = <aaseq>CFSLSCPHPWLRVLSLCHHKSRAFSPPKSWKISAAVVRAPQSPA RPRISGKDTVYRPLSMELCTSSVSGSVQWSRISAFDCRTRSHGYASSSSWVCQRRRKT SFYVMNAASTGALPPTKKLIPRTNVRNISGDKPSSALEQLDIERGVCIPFRKYTPEMV RNRVLGSRGSVLSLASRGVEIIWKLGLYWSALMYDFLVGRDEEIVPFRARQLRNLLCD LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNQVAFSIIEEELGQPLERLF SRISSRTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI SLQKLGCNAELIVDEFGEKLLEELDYTLEATNIEDFLENFKDDPTVKIPQVYKQYSGS RVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVSAALRQLLEFGLFHGDPHPGNIFA MRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVSP IVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGIC FTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKEN VSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLIDAGIRRQLIMAFTEDS KLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDSILSDRQY</aaseq>|
DNA = <dnaseqindica>5107..5177#4956..5025#4698..4845#4509..4621#4175..4246#3957..4084#3456..3651#3004..3183#2769..2909#2369..2533#1843..1989#1647..1736#1318..1524#913..1235#3..156#attgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaaggtgagaattttcttgcccccacccgcgccgtgcccccgtgccgtcttcttggggttgggggtggttccccattcggatgaactgtgcttgttcgagtgatttgcgtgtgcagatatgattttttggttttttttgttttgggctgtttcaattcactgcggtagaggtcttgctactcctagacggtttgtggttgcttcctagtccttcttcttctcctctggccagcgaattcaattctccggcgaggtcgatccgtgctcgcgcaggttggggccatgttggacctccgcatcaggtttgggggtgggagtgagggcgccgggtcggtcgcgttctggatgtggatcccgccgccgcactcgctggcgtcggaggtgatctcgtggaggagcatatggcgtggtggaagtgggcgagcttgacggcgagctgggctgcattaggtggtgggcagcgcggcggcgcccatgggtgtaggttatcacgctcggatgctcttacaagacgcctccaagaactcaatttgtggttctgaacttctctgaaaaaagaagtctgttggttgtaaattgggaagggcaattcatgttgaataacagcaaataggggtgagctcagggagtgataattagtgatttgtttttctcctcaattgaattttaggaagtagggttatagtgttttctgtagctagggatttgacattggagattatatttcaagtgtgatgatgtagcttgttattttgtccagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtattgaacacttcaaatggttatatttacagggttagttttctgaaatccgttgtaaatatgctcatttccaaattgctaggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttatattcttctctttctgataaatccctaaatctcccaagacgataacactccaaatatctctgctgcttcctttgtatattacagtccttaatgcatttggtcccattgtttttgttaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtacatgtgtactgtaaaaattccatgcatgtttgtggaagattatacttactaggactgcggaggcatcaggatgattaacttagcttattgatcgaattgacaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcatgtttgcttcattttcttgtatttgtttactactttagtactttatttcttttgtgatttgagatgatcgaaaagttctatgacttgatgcttcatttttaccatggtcctctatctctatcatggcccatggatgagtacaagcgtgtttctcaccctaatgaaattcgtgaccattttacaccttatgagttgtgaaaaagaatttagttaaatgtttatacatgcttcagtagaatgtccagtcgccgactctatcagtagtgtcttggactagtagtttgtgacatttttaatgtttgttcttgtactcatgcataatataatgtttattgttgtgcttatttattgattactgtgattcaaaataacaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgtaagctttttgttcctttttattggtgttattatgttctcaacataatgaattagctattggacagtaggtatcacaatcttacatgtgttgtcaatggtgtccactttcttttgttgggaagacagtaccggaaaagagaaaacaatttcattgacaaactcttatatctctcatggcttattttgtcatggatggaatgttgacgtgctttctattccatacaatgctttaggaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggtttgtagcattatttctagttttttttatcaaaggtgaaatagttcagtgtaatttttctcgtgtttttgagtccaaaagtttatttgtacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcaggtatgaaatattgctttttagcagtggtaaaattcatctttgaatttttcagttaattggattagtaatattttttgtcaatactcaatttgataaataatatctgattcatgcctactatgaaaaaaaaatcgattctatagtaaataatgtacattggtcatttacagtcctgcaatctgttaaaactgcagaaatatatcttatcaggcctgttggctaaaacagaaattggctaacaggttgttctgctattgttttcctatgtgcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccggtaaggctgtaatgcttcgcagtttatctattaccgagaactggatgtgtgcttgctttgttcttcatgatctatatcagcattttttttcaatgcatggtcatcaaattatattactgctgaaggtggacatttctgatcatgattcatggatattattttgatggcattccttgtggcacccacacttgttagaatgtttgcttgattatttttgttctattaatcatgaatgcttaggataagactgctttctatattcatatatatttcatcctctaatttatttataaccaaatttatagggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggtgtgacatgtgccattcttttcagttctcaagaaagaaaaaaaatgtgtgatcagttctcaccgttcactgtgctgtttcaatatccaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtaaccagtcaaggcctccttaacactactgcaaagctattgtccattggtagtttctaccatatgatccaccattgtatatgtgaaagtgtggaataaagcatcagtgcagaaaataaacagcaagtttgttctgtcaaactacaggaaagaagcatgttttagcatttaaatggttgacaattgtgtgacatgccattatttatttttaaaaaagacttttaccacttatgtcgtcaccatgttttttttccctatgaaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgtgagtatcagaactgtctgttctataacgctctaaatcttatttctagaaatactctgatcttgtgaaccactaggcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagaggtactttaacatggattgttcactacagtattcacacaagttgtatactaaggaaagatggaagataatttttccagtggattactgtaacccatttctctcttttgcagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaaggtaagtcagtcgacctatgttagttggaaaaactctcctgttcttccatttgaaatgcatttactttacttttctgtgcagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactgatctcaggttaacagtttagagcagcaagcagaagtgctgtcaagacctgcaggagccattcttccttcagttaacctacactaaaatagatagatatagatgactacatttttcctctttgctgtacacaatttggtttgctattcttttctatagtatatcattgtataggaaacttgccatctgcatttcatttatatattttcgatggctctgtatatgccgtttgtatagcggaagaaaaggaacttgtatatagaatgagcttgtattgtgggagaaagtagctatatgtgtacatcgaggaaacttacattataagatcagatcatatgttttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074041.1 RefSeq:Os11g0216300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0216300

2014-06-26T04:59:13Z

Littlescrew: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0216300|
Description = ABC-1 domain containing protein|
Version = NM_001074041.1 GI:115484730 GeneID:4350081|
Length = 5518 bp|
Definition = Oryza sativa Japonica Group Os11g0216300, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:6051169..6056686|
CDS = 6051510..6051580,6051662..6051731,6051842..6051989,6052066..6052178,6052441..6052512 ,6052603..6052730,6053036..6053231,6053504..6053683,6053778..6053918 ,6054154..6054318,6054698..6054844,6054951..6055040,6055163..6055369 ,6055452..6055774,6056531..6056684|
GCID = <gbrowseImage1>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:6051169..6056686
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>tgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccgggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactga</cdnaseq>|
AA = <aaseq>CFSLSCPHPWLRVLSLCHHKSRAFSPPKSWKISAAVVRAPQSPA RPRISGKDTVYRPLSMELCTSSVSGSVQWSRISAFDCRTRSHGYASSSSWVCQRRRKT SFYVMNAASTGALPPTKKLIPRTNVRNISGDKPSSALEQLDIERGVCIPFRKYTPEMV RNRVLGSRGSVLSLASRGVEIIWKLGLYWSALMYDFLVGRDEEIVPFRARQLRNLLCD LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNQVAFSIIEEELGQPLERLF SRISSRTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI SLQKLGCNAELIVDEFGEKLLEELDYTLEATNIEDFLENFKDDPTVKIPQVYKQYSGS RVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVSAALRQLLEFGLFHGDPHPGNIFA MRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVSP IVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGIC FTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKEN VSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLIDAGIRRQLIMAFTEDS KLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDSILSDRQY</aaseq>|
DNA = <dnaseqindica>5107..5177#4956..5025#4698..4845#4509..4621#4175..4246#3957..4084#3456..3651#3004..3183#2769..2909#2369..2533#1843..1989#1647..1736#1318..1524#913..1235#3..156#attgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaaggtgagaattttcttgcccccacccgcgccgtgcccccgtgccgtcttcttggggttgggggtggttccccattcggatgaactgtgcttgttcgagtgatttgcgtgtgcagatatgattttttggttttttttgttttgggctgtttcaattcactgcggtagaggtcttgctactcctagacggtttgtggttgcttcctagtccttcttcttctcctctggccagcgaattcaattctccggcgaggtcgatccgtgctcgcgcaggttggggccatgttggacctccgcatcaggtttgggggtgggagtgagggcgccgggtcggtcgcgttctggatgtggatcccgccgccgcactcgctggcgtcggaggtgatctcgtggaggagcatatggcgtggtggaagtgggcgagcttgacggcgagctgggctgcattaggtggtgggcagcgcggcggcgcccatgggtgtaggttatcacgctcggatgctcttacaagacgcctccaagaactcaatttgtggttctgaacttctctgaaaaaagaagtctgttggttgtaaattgggaagggcaattcatgttgaataacagcaaataggggtgagctcagggagtgataattagtgatttgtttttctcctcaattgaattttaggaagtagggttatagtgttttctgtagctagggatttgacattggagattatatttcaagtgtgatgatgtagcttgttattttgtccagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtattgaacacttcaaatggttatatttacagggttagttttctgaaatccgttgtaaatatgctcatttccaaattgctaggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttatattcttctctttctgataaatccctaaatctcccaagacgataacactccaaatatctctgctgcttcctttgtatattacagtccttaatgcatttggtcccattgtttttgttaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtacatgtgtactgtaaaaattccatgcatgtttgtggaagattatacttactaggactgcggaggcatcaggatgattaacttagcttattgatcgaattgacaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcatgtttgcttcattttcttgtatttgtttactactttagtactttatttcttttgtgatttgagatgatcgaaaagttctatgacttgatgcttcatttttaccatggtcctctatctctatcatggcccatggatgagtacaagcgtgtttctcaccctaatgaaattcgtgaccattttacaccttatgagttgtgaaaaagaatttagttaaatgtttatacatgcttcagtagaatgtccagtcgccgactctatcagtagtgtcttggactagtagtttgtgacatttttaatgtttgttcttgtactcatgcataatataatgtttattgttgtgcttatttattgattactgtgattcaaaataacaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgtaagctttttgttcctttttattggtgttattatgttctcaacataatgaattagctattggacagtaggtatcacaatcttacatgtgttgtcaatggtgtccactttcttttgttgggaagacagtaccggaaaagagaaaacaatttcattgacaaactcttatatctctcatggcttattttgtcatggatggaatgttgacgtgctttctattccatacaatgctttaggaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggtttgtagcattatttctagttttttttatcaaaggtgaaatagttcagtgtaatttttctcgtgtttttgagtccaaaagtttatttgtacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcaggtatgaaatattgctttttagcagtggtaaaattcatctttgaatttttcagttaattggattagtaatattttttgtcaatactcaatttgataaataatatctgattcatgcctactatgaaaaaaaaatcgattctatagtaaataatgtacattggtcatttacagtcctgcaatctgttaaaactgcagaaatatatcttatcaggcctgttggctaaaacagaaattggctaacaggttgttctgctattgttttcctatgtgcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccggtaaggctgtaatgcttcgcagtttatctattaccgagaactggatgtgtgcttgctttgttcttcatgatctatatcagcattttttttcaatgcatggtcatcaaattatattactgctgaaggtggacatttctgatcatgattcatggatattattttgatggcattccttgtggcacccacacttgttagaatgtttgcttgattatttttgttctattaatcatgaatgcttaggataagactgctttctatattcatatatatttcatcctctaatttatttataaccaaatttatagggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggtgtgacatgtgccattcttttcagttctcaagaaagaaaaaaaatgtgtgatcagttctcaccgttcactgtgctgtttcaatatccaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtaaccagtcaaggcctccttaacactactgcaaagctattgtccattggtagtttctaccatatgatccaccattgtatatgtgaaagtgtggaataaagcatcagtgcagaaaataaacagcaagtttgttctgtcaaactacaggaaagaagcatgttttagcatttaaatggttgacaattgtgtgacatgccattatttatttttaaaaaagacttttaccacttatgtcgtcaccatgttttttttccctatgaaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgtgagtatcagaactgtctgttctataacgctctaaatcttatttctagaaatactctgatcttgtgaaccactaggcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagaggtactttaacatggattgttcactacagtattcacacaagttgtatactaaggaaagatggaagataatttttccagtggattactgtaacccatttctctcttttgcagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaaggtaagtcagtcgacctatgttagttggaaaaactctcctgttcttccatttgaaatgcatttactttacttttctgtgcagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactgatctcaggttaacagtttagagcagcaagcagaagtgctgtcaagacctgcaggagccattcttccttcagttaacctacactaaaatagatagatatagatgactacatttttcctctttgctgtacacaatttggtttgctattcttttctatagtatatcattgtataggaaacttgccatctgcatttcatttatatattttcgatggctctgtatatgccgtttgtatagcggaagaaaaggaacttgtatatagaatgagcttgtattgtgggagaaagtagctatatgtgtacatcgaggaaacttacattataagatcagatcatatgttttgc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074041.1 RefSeq:Os11g0216300]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0549635

2014-06-26T04:57:12Z

Littlescrew: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
''OsABC1-14'' contains 17 extrons, locates in chromosome 11, and encodes a 430-amino-acid protein.
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgatt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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0549635

2014-06-26T04:50:47Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology
*Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, China

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgattggacatagttatatcagttaaattcattatacgttttcttttcaatttctttaaataattcatgatgtgttaaaacatcaggtgtatctcacccctttgtgcacttctctgtgcattttactagcatcaaactttggttaatctgtgtatgtggattttggacactgaaaatatttccgggcccctgtagctgattttaggcacttaaaaagtgaggacccctatagctgcactgtgcactcaatttgttgtttctattgtatagaacttacagttgttgtattgcagattttatccaagaggctaagaattctgagagaacagctagctgcttcaggaaaaataatgttgtcaaagtaccttgcgtgttttgggtatggagcctgtccaacctttattcttagagcatctccaaccagttgtacttagcttatgaaaacagttatatctaaagcccttcacatgatctagtgcttatttgagagagattacaagctagtactattttggccatcatctagtgcttattttgcacctagcttataaaaccagtaagccaagaatgtgtgcattcagagaaatttgttcactagaaccctagttttctattgaacaacaaagaaattaatgtcttgctacatcatgcaagaaatgagcatccaatgttgaacttcgaacaacagcttgattgcattttgagaagtgtaaattaatactttataggattaaacaatgaacaagcaattggctaccataaaaaaaaatgactgcctgaaaccaaaagaaaattaaaagaatcatttagttctatcagttttccatgctatctatcggttgaacttttgtgatactaaatgttttccattggctaaacttttgtgctattgaagagaagttttctattggataaattttgtgctactgaagtaaaattttctttgacagacttattcaactcattgctaatattttgggtcatcagttgttatatcacattttaatctgttgctgcatacagtgctaataattttggtttgtgtatataactttgactaaagttaaagctgttataggaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggtaaattgctatttcttggtgatatttataaagtttatattggagcttcattcatcaatcaattggatctcatccattatcgaaacatactctgttaagtgtaaactccataaagatatggaaaaggaaagagagaaattctgcatagagaaaggaataggaaggaggtggaggacattacctccagttgctattgtatctgaaaattctgtaatgcaaaaatagatggaacatattacatctttcttacttttgtgacaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaaggtttctttttagttcttggcaccaaacatttgtttatcactttatcctgaatgatttcctgagaaattttcttgcatgaatccatattgttgatttgacaaaaattagaaagggtttccaaatagacaagcacataagtgtgtacctacataagattggtacaagtaatatggcatgcccagcccaaataaggtttaatgatttggattgttcatgcataagacatggaagatctattgctacacttctatttatctggtgtcatagtttttggtcacctttagctaggaagtcattcaaatgtgtagagaattgttgatataatattcttgtcttatgacttgtaagcattttagatttcacaatttgaaattgttgcttaacaccttacagacagatctgtggcatggttagtttagaaaatgctgtgcatttttcactatttggtccacatatttttatataacacagattgtacaagtgtattcttgtcggaagtataattggtacttgtttatgtattacctaaggagattgcagaatctgaagttctgaacaaagaaggatattaatttattctaattttgcttgttatacttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcaggtagctaaagcattaattgaactgtttggcgaaatgatttttgtacatggttttgttcatggcgatcctcatcctggaaatatattagtttctcctcaaggccaagggaaattttcattaggtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattaggtcctcatcgtttgcccatatttcttaataagctaaaatggcttattagggaacaaaaattaatttgtaggtaaaacttttatatatgtgttcatatcgacttaaaagccatctgaaaaagaaactatgtttaaaatatcttaaaatcaacttcaaaattaagtttgaaaaatcaaattttggcttttgctttggcttattagtgcaaagcaatggggctctaagaatgtacggtatggtgagaagcacatggtttgaagagagtagacacttaatatattccagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccatatttttgcagtgctgcttgatcatggaatttataaagaattag</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0549635

2014-06-26T04:06:32Z

Littlescrew: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgattggacatagttatatcagttaaattcattatacgttttcttttcaatttctttaaataattcatgatgtgttaaaacatcaggtgtatctcacccctttgtgcacttctctgtgcattttactagcatcaaactttggttaatctgtgtatgtggattttggacactgaaaatatttccgggcccctgtagctgattttaggcacttaaaaagtgaggacccctatagctgcactgtgcactcaatttgttgtttctattgtatagaacttacagttgttgtattgcagattttatccaagaggctaagaattctgagagaacagctagctgcttcaggaaaaataatgttgtcaaagtaccttgcgtgttttgggtatggagcctgtccaacctttattcttagagcatctccaaccagttgtacttagcttatgaaaacagttatatctaaagcccttcacatgatctagtgcttatttgagagagattacaagctagtactattttggccatcatctagtgcttattttgcacctagcttataaaaccagtaagccaagaatgtgtgcattcagagaaatttgttcactagaaccctagttttctattgaacaacaaagaaattaatgtcttgctacatcatgcaagaaatgagcatccaatgttgaacttcgaacaacagcttgattgcattttgagaagtgtaaattaatactttataggattaaacaatgaacaagcaattggctaccataaaaaaaaatgactgcctgaaaccaaaagaaaattaaaagaatcatttagttctatcagttttccatgctatctatcggttgaacttttgtgatactaaatgttttccattggctaaacttttgtgctattgaagagaagttttctattggataaattttgtgctactgaagtaaaattttctttgacagacttattcaactcattgctaatattttgggtcatcagttgttatatcacattttaatctgttgctgcatacagtgctaataattttggtttgtgtatataactttgactaaagttaaagctgttataggaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggtaaattgctatttcttggtgatatttataaagtttatattggagcttcattcatcaatcaattggatctcatccattatcgaaacatactctgttaagtgtaaactccataaagatatggaaaaggaaagagagaaattctgcatagagaaaggaataggaaggaggtggaggacattacctccagttgctattgtatctgaaaattctgtaatgcaaaaatagatggaacatattacatctttcttacttttgtgacaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaaggtttctttttagttcttggcaccaaacatttgtttatcactttatcctgaatgatttcctgagaaattttcttgcatgaatccatattgttgatttgacaaaaattagaaagggtttccaaatagacaagcacataagtgtgtacctacataagattggtacaagtaatatggcatgcccagcccaaataaggtttaatgatttggattgttcatgcataagacatggaagatctattgctacacttctatttatctggtgtcatagtttttggtcacctttagctaggaagtcattcaaatgtgtagagaattgttgatataatattcttgtcttatgacttgtaagcattttagatttcacaatttgaaattgttgcttaacaccttacagacagatctgtggcatggttagtttagaaaatgctgtgcatttttcactatttggtccacatatttttatataacacagattgtacaagtgtattcttgtcggaagtataattggtacttgtttatgtattacctaaggagattgcagaatctgaagttctgaacaaagaaggatattaatttattctaattttgcttgttatacttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcaggtagctaaagcattaattgaactgtttggcgaaatgatttttgtacatggttttgttcatggcgatcctcatcctggaaatatattagtttctcctcaaggccaagggaaattttcattaggtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattaggtcctcatcgtttgcccatatttcttaataagctaaaatggcttattagggaacaaaaattaatttgtaggtaaaacttttatatatgtgttcatatcgacttaaaagccatctgaaaaagaaactatgtttaaaatatcttaaaatcaacttcaaaattaagtttgaaaaatcaaattttggcttttgctttggcttattagtgcaaagcaatggggctctaagaatgtacggtatggtgagaagcacatggtttgaagagagtagacacttaatatattccagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccatatttttgcagtgctgcttgatcatggaatttataaagaattag</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0549635

2014-06-26T04:05:51Z

Littlescrew: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
[[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'''Table 1. Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]]
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgattggacatagttatatcagttaaattcattatacgttttcttttcaatttctttaaataattcatgatgtgttaaaacatcaggtgtatctcacccctttgtgcacttctctgtgcattttactagcatcaaactttggttaatctgtgtatgtggattttggacactgaaaatatttccgggcccctgtagctgattttaggcacttaaaaagtgaggacccctatagctgcactgtgcactcaatttgttgtttctattgtatagaacttacagttgttgtattgcagattttatccaagaggctaagaattctgagagaacagctagctgcttcaggaaaaataatgttgtcaaagtaccttgcgtgttttgggtatggagcctgtccaacctttattcttagagcatctccaaccagttgtacttagcttatgaaaacagttatatctaaagcccttcacatgatctagtgcttatttgagagagattacaagctagtactattttggccatcatctagtgcttattttgcacctagcttataaaaccagtaagccaagaatgtgtgcattcagagaaatttgttcactagaaccctagttttctattgaacaacaaagaaattaatgtcttgctacatcatgcaagaaatgagcatccaatgttgaacttcgaacaacagcttgattgcattttgagaagtgtaaattaatactttataggattaaacaatgaacaagcaattggctaccataaaaaaaaatgactgcctgaaaccaaaagaaaattaaaagaatcatttagttctatcagttttccatgctatctatcggttgaacttttgtgatactaaatgttttccattggctaaacttttgtgctattgaagagaagttttctattggataaattttgtgctactgaagtaaaattttctttgacagacttattcaactcattgctaatattttgggtcatcagttgttatatcacattttaatctgttgctgcatacagtgctaataattttggtttgtgtatataactttgactaaagttaaagctgttataggaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggtaaattgctatttcttggtgatatttataaagtttatattggagcttcattcatcaatcaattggatctcatccattatcgaaacatactctgttaagtgtaaactccataaagatatggaaaaggaaagagagaaattctgcatagagaaaggaataggaaggaggtggaggacattacctccagttgctattgtatctgaaaattctgtaatgcaaaaatagatggaacatattacatctttcttacttttgtgacaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaaggtttctttttagttcttggcaccaaacatttgtttatcactttatcctgaatgatttcctgagaaattttcttgcatgaatccatattgttgatttgacaaaaattagaaagggtttccaaatagacaagcacataagtgtgtacctacataagattggtacaagtaatatggcatgcccagcccaaataaggtttaatgatttggattgttcatgcataagacatggaagatctattgctacacttctatttatctggtgtcatagtttttggtcacctttagctaggaagtcattcaaatgtgtagagaattgttgatataatattcttgtcttatgacttgtaagcattttagatttcacaatttgaaattgttgcttaacaccttacagacagatctgtggcatggttagtttagaaaatgctgtgcatttttcactatttggtccacatatttttatataacacagattgtacaagtgtattcttgtcggaagtataattggtacttgtttatgtattacctaaggagattgcagaatctgaagttctgaacaaagaaggatattaatttattctaattttgcttgttatacttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcaggtagctaaagcattaattgaactgtttggcgaaatgatttttgtacatggttttgttcatggcgatcctcatcctggaaatatattagtttctcctcaaggccaagggaaattttcattaggtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattaggtcctcatcgtttgcccatatttcttaataagctaaaatggcttattagggaacaaaaattaatttgtaggtaaaacttttatatatgtgttcatatcgacttaaaagccatctgaaaaagaaactatgtttaaaatatcttaaaatcaacttcaaaattaagtttgaaaaatcaaattttggcttttgctttggcttattagtgcaaagcaatggggctctaagaatgtacggtatggtgagaagcacatggtttgaagagagtagacacttaatatattccagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccatatttttgcagtgctgcttgatcatggaatttataaagaattag</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

File:Abc1-table.jpg

2014-06-26T04:02:54Z

Littlescrew: Table 1. Basic information of the rice ABC1 genes.

Table 1. Basic information of the rice ABC1 genes.

Os11g0549635

2014-06-26T03:36:50Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1"> Bousquet I, Dujardin G, Slonimski P P. 1991. ABC1, a novel yeast nuclear gene has a dual function in mitochondria: It suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J, 10(8): 2023–2031.</ref>
<ref name="ref2"> Villalba J M, Navas P. 2000. Plasma membrane redox system in the control of stress-induced apoptosis. Antioxid Redox Signal, 2(2): 213–230.</ref>
<ref name="ref3"> Ernster L, Forsmark-Andree P. 1993. Ubiquinol: an endogenous antioxidant in aerobic organisms. Clin Investig, 71(8 Suppl): S60–S65.</ref>
<ref name="ref4">GAOQing-song, ZHANGDan, XULiang, XUChen-wu. Systematic Identification of Rice ABC1Gene Family and Its Response to Abiotic Stress. Rice Science, 2011, 18(2).</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgattggacatagttatatcagttaaattcattatacgttttcttttcaatttctttaaataattcatgatgtgttaaaacatcaggtgtatctcacccctttgtgcacttctctgtgcattttactagcatcaaactttggttaatctgtgtatgtggattttggacactgaaaatatttccgggcccctgtagctgattttaggcacttaaaaagtgaggacccctatagctgcactgtgcactcaatttgttgtttctattgtatagaacttacagttgttgtattgcagattttatccaagaggctaagaattctgagagaacagctagctgcttcaggaaaaataatgttgtcaaagtaccttgcgtgttttgggtatggagcctgtccaacctttattcttagagcatctccaaccagttgtacttagcttatgaaaacagttatatctaaagcccttcacatgatctagtgcttatttgagagagattacaagctagtactattttggccatcatctagtgcttattttgcacctagcttataaaaccagtaagccaagaatgtgtgcattcagagaaatttgttcactagaaccctagttttctattgaacaacaaagaaattaatgtcttgctacatcatgcaagaaatgagcatccaatgttgaacttcgaacaacagcttgattgcattttgagaagtgtaaattaatactttataggattaaacaatgaacaagcaattggctaccataaaaaaaaatgactgcctgaaaccaaaagaaaattaaaagaatcatttagttctatcagttttccatgctatctatcggttgaacttttgtgatactaaatgttttccattggctaaacttttgtgctattgaagagaagttttctattggataaattttgtgctactgaagtaaaattttctttgacagacttattcaactcattgctaatattttgggtcatcagttgttatatcacattttaatctgttgctgcatacagtgctaataattttggtttgtgtatataactttgactaaagttaaagctgttataggaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggtaaattgctatttcttggtgatatttataaagtttatattggagcttcattcatcaatcaattggatctcatccattatcgaaacatactctgttaagtgtaaactccataaagatatggaaaaggaaagagagaaattctgcatagagaaaggaataggaaggaggtggaggacattacctccagttgctattgtatctgaaaattctgtaatgcaaaaatagatggaacatattacatctttcttacttttgtgacaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaaggtttctttttagttcttggcaccaaacatttgtttatcactttatcctgaatgatttcctgagaaattttcttgcatgaatccatattgttgatttgacaaaaattagaaagggtttccaaatagacaagcacataagtgtgtacctacataagattggtacaagtaatatggcatgcccagcccaaataaggtttaatgatttggattgttcatgcataagacatggaagatctattgctacacttctatttatctggtgtcatagtttttggtcacctttagctaggaagtcattcaaatgtgtagagaattgttgatataatattcttgtcttatgacttgtaagcattttagatttcacaatttgaaattgttgcttaacaccttacagacagatctgtggcatggttagtttagaaaatgctgtgcatttttcactatttggtccacatatttttatataacacagattgtacaagtgtattcttgtcggaagtataattggtacttgtttatgtattacctaaggagattgcagaatctgaagttctgaacaaagaaggatattaatttattctaattttgcttgttatacttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcaggtagctaaagcattaattgaactgtttggcgaaatgatttttgtacatggttttgttcatggcgatcctcatcctggaaatatattagtttctcctcaaggccaagggaaattttcattaggtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattaggtcctcatcgtttgcccatatttcttaataagctaaaatggcttattagggaacaaaaattaatttgtaggtaaaacttttatatatgtgttcatatcgacttaaaagccatctgaaaaagaaactatgtttaaaatatcttaaaatcaacttcaaaattaagtttgaaaaatcaaattttggcttttgctttggcttattagtgcaaagcaatggggctctaagaatgtacggtatggtgagaagcacatggtttgaagagagtagacacttaatatattccagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccatatttttgcagtgctgcttgatcatggaatttataaagaattag</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0549635

2014-06-26T03:33:59Z

Littlescrew: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />.
There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />.
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins.
The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />.
Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os11g0549635|
Description = ABC-1 domain containing protein|
Version = NM_001189662.1 GI:297728454 GeneID:9268625|
Length = 7571 bp|
Definition = Oryza sativa Japonica Group Os11g0549635, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:22202453..22210023|
CDS = 22202453..22202605,22202722..22202805,22203528..22203668,22205225..22205269,22206152..22206229 ,22206969..22207035,22207218..22207252,22208408..22208458,22208720..22208767 ,22209991..22210023|
GCID = <gbrowseImage1>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:22202453..22210023
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacgattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttggatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactagtttgcctgctcctttcaaggaatcaaagatcaacagaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaagtgctgcttgatcatggaatttataaagaattag</cdnaseq>|
AA = <aaseq>MLRRRRGPLLLAAAAAAAAGAVAAALPSGEGRGAAPSVLHAVAR SSRAVYTIGFVVVDYKYSLRGLAHGSADYRDKLSEVHLRSAKKILKLCEANRGFYVKA GQFVSSIRQVPKEYSSTLSCLQDQVHRGRLNNNQEVAVKVQYPGLERRMKIDIMTMSF LSKSLSWIFPDYRFEKLLTEFERTMSMELVCLLLSRNQRSTELTSKEVLTMEFCSGYK VDNLNSLRKADISPTKCCLIMEFIKN</aaseq>|
DNA = <dnaseqindica>1..153#270..353#1076..1216#2773..2817#3700..3777#4517..4583#4766..4800#5956..6006#6268..6315#7539..7571#atgctccgccgccgccgcggcccgctcctcctcgccgccgccgccgccgccgcggcgggcgccgtggcggctgcgctcccctccggagaaggccgcggcgcagccccctccgtgctccacgccgtcgcccgctcctcccgcgccgtctacacggttcgcccccaaatttgagagacgctaacctctatctctgtgtgtgtgtgtgtgggtgggtgggtgggtaattcggatgcttctcgtgctcattgctgcggatttggttgttccagattggcttcgtggtagtggactacaagtactcgctccgtgggctggctcatgggtcggcggattaccgggataagctctccgaggtttgtatggttgcgctggcggtttgcggattgcacgcgtaagctggttaatggcgatggaaaactgtaatttgtttttttgtttctctctcatggattattaggtaggtaggaatgaagtcattgatttcttcaatgtggaaaatgaacttgtaggattgtgggaagaaggatttattttgatacatgtgaccatgtgacctattgctcctggcctcctaacactgtttcagttggcaaaggaagaacggatatgaggaactttggggataggagaagctgtctcacaatttcttttttttttcctgtacggcatcaaaccaaccgttgttaacagccttatctattctaattatgaattcaacatcgtggtttggtaccaaacagcgtcattgatagctattgcttcttttagaactcaacacttttagttggacagcttccttgacataattttagtttttcgtttcatttgatattttactttagaaggccatcaatcagatatctcaagcttttcccatgtcttcgtattttgatggaaacaaagttgcacaatgtgggtgctctgatgctcatttgaatagattatgtttccaggagttccatcagagttagcataacttgattaaacatgcggcatttcgaatgcagttacaaatagcaagagctccagatggttatagatctgtaaatccttaatgtttacttgtatattgtaggttcatttgcgttcagcaaaaaagatactcaaactatgtgaagcgaacagagggttttatgtaaaggctggtcaatttgtttcgtcaataagacaagtaccaaaagaatactcatcaacactctcttgtctgcaagatcaggtttactagttaatttctatcttaatgttagtgtacactgtatagcctcattagtttttttttatttaacatttttgtaataattcaggcaactccatgcaactttcaagatatcaaaatagtgatagagcagaaacttggcaaggatttacatagcatgtaagtattaaaggttcatgattttttaaacttgattgtgttatctgtagtatgcagagctgtggttataggcaggttcggaggatagcgtggacttaacagggttgtggtcccccagaaaattttcctttagctactatgcagcagcaattggcacacaagcccatgtgtggtagctagtagtatgcagcatagcagctgggccgtgtctcagtcccagtgtggctgatcatcctctcggaccagctactcaacagttaggcttagttcgtgaattttgatggacttgccatattaattgctcactgctgcttatctttgtttcttgtgtggtgactgatgagagagctacacaccgtggaaagaagtaacaggatctgtgagagcaatgtccattaagcatgtggcagttaggcctgatattagtgtgtaatagattcgtagtgtatttttagtactaaatttggtattttaatagtgtgttaatgaataccattaactttttggtcccccattggtagttcactcaaactccatcactggttataggaagtgaggttttctccattttgtttcttttaaaaaaaaatctgtgtcatatgtctttatgttggcattttatggtctcttaaaagattatctaagttcaacatcaaatcttccttaggtatagctaaaaaagggtatcataaacttgttctctactgtatgcagagtgctgaaaagtagagtttgcatgcttttcattgcataaaactatcatataacctgtgatgtacctgatggttactctggtgtggttcattgtcgtcagagtagattgtgcatgagtttgcttcttagctggttcaatctagacatgccatgggctcttcggtttacttttttaccctttgtcagcctgtgatgtgtgtccttgatagcttgtgtaccatcgcaattggctgctaggatgcttagctaaggttggttgacattagtgctagtgtcatctccttgccatttgcattaagcaatggctatatgaatgcactgactttataacactgttggaccaatttgttcacgtttagctagtagtggtgggttgagtttcccatggttagctctagctgcattcgaactttcatggaccacctgtatcaactaagattaaacttttaggctgagtgggggtgaatgcatgtgttcttgcaagcaggacttacccagggctgtatatttaaaagttgatagctcttgtcagctgtacaaatagctcgtaattttattgaaattttctgttgattagttgcatagtttccaaattcaggcaaaaagtgtttaagatttaatacttgagtatcagattcctggaatttgatgaacatccgattgctgctgcatcaattgctcaggttcatcgaggtcggttgaataataatcaggaagtagctgtgaaggttggttgctgtgaacatgtatctcttacctgtcccattattgttctcaaagatattttagtgattgtttgatcctatactgttatgtcttcaccattcaaatgaagcagggtgtaatgtcctgtgctctgcaatacatttatgtaaaccattgaaaatatgtccagcttgatatcatcacactgcatgctcacagtttcaagacagaagtcagagagattgcatttatgtgaaatccaccatccagagttataacttgcacagggacctaacaaatttatatccaccatcccagttctaccttatagctttgcacatctatcaaatttatggatgcttgtcaacagaacttttaatttaaggatggacaactgccaatttcaaactttagtaatttatccaactctttacacaaattacaagttggagtattcttctaaatttcacagccaatgagaaagttggattacctgaaaaattttttgattattaacttaggctacaacaatttctaactttagcttagccatatgaaatgtttatacactaattttacatggaagcagctaagccatccaatatccattgatgtgaacatgaatttttcatctcaattcttttgactcagagcatagcataaactgatctcttgcacctttttttttaaaaaaaaatatagcgatatggttttatcataattttgctagcagaattgtggaaacggacagaagtgaatatttcccctctctttactggagatatccttttatattcaatttgaaatgccatttcattatttccctataatgtcttgctacattgtctttcttggtgtgcatgtatattaatctagaggacctccatcttaactgtgtcatataggttcaatatcctgggcttgagcggcgcatgaagatagacataatgactatgtctttcttgtcaaaatctctctcttgggtatgttacatgtttcaattttgcgatttccattgatttgcaaaattgtattttgtgcatgtagctcattttacatgaaaactattttttacccatgtaatttattactatcatctacacaatattctgaaagaagagcaggtaatgagcacagttcaattatattgtcaactgtcagcttttttaacatcaagattgttactaaaattctaaaaataaaccattcttgaagcactagtgtccctggcaaaatttttgtaaaaaagagagtatgcaatcctaagcaagcaattgtttttttttgttgattagcttgactcttaactgttttaagtggcagttgccataaatgtacaacgtaaaattttcattgattgtaaagcttgacatgtgccatgatatgtttaaggaatgttatcagtgttttagtttgtggcatcattaatgaaaagttgatttggggttatttcttaaatccaaagcaaaccactgatttcttattagcgtgatgctacttctgtttttgacactgtttagccttttatggtagttgccataattggataactttaaaaagtaaagtacttactgactacaattggtacaataattgacttttccagtgtggtaaactattcttattttcttttctcatgccttatgtttattgaagttcagatctaagaaattagagtaatttattggtggaattgaaaatttgatggttttctatttgcagatttttcctgattataggtttgagaagttattgactgagtttgagagaaccatgtcaatggaactaggtaaatgcatggaagtttctttatttctaataaatattgtgttacttttatgtattatcagttgaaataattttctttgatgttctggtttcatgatgtatagagccatctattattttgctcgagccatagtattgcattcagtaaagctagttgctgttgtcttttttttttttaatcagtttgcctgctcctttcaaggaatcaaagatcaacagtacagatctcgtgtttgttcaaatcaatcaatacatgctttttttaaaagaaaagttcaatgtactctatataacacgattggacatagttatatcagttaaattcattatacgttttcttttcaatttctttaaataattcatgatgtgttaaaacatcaggtgtatctcacccctttgtgcacttctctgtgcattttactagcatcaaactttggttaatctgtgtatgtggattttggacactgaaaatatttccgggcccctgtagctgattttaggcacttaaaaagtgaggacccctatagctgcactgtgcactcaatttgttgtttctattgtatagaacttacagttgttgtattgcagattttatccaagaggctaagaattctgagagaacagctagctgcttcaggaaaaataatgttgtcaaagtaccttgcgtgttttgggtatggagcctgtccaacctttattcttagagcatctccaaccagttgtacttagcttatgaaaacagttatatctaaagcccttcacatgatctagtgcttatttgagagagattacaagctagtactattttggccatcatctagtgcttattttgcacctagcttataaaaccagtaagccaagaatgtgtgcattcagagaaatttgttcactagaaccctagttttctattgaacaacaaagaaattaatgtcttgctacatcatgcaagaaatgagcatccaatgttgaacttcgaacaacagcttgattgcattttgagaagtgtaaattaatactttataggattaaacaatgaacaagcaattggctaccataaaaaaaaatgactgcctgaaaccaaaagaaaattaaaagaatcatttagttctatcagttttccatgctatctatcggttgaacttttgtgatactaaatgttttccattggctaaacttttgtgctattgaagagaagttttctattggataaattttgtgctactgaagtaaaattttctttgacagacttattcaactcattgctaatattttgggtcatcagttgttatatcacattttaatctgttgctgcatacagtgctaataattttggtttgtgtatataactttgactaaagttaaagctgttataggaactaacaagcaaggaggttttgacaatggaattttgttctggctacaaggtaaattgctatttcttggtgatatttataaagtttatattggagcttcattcatcaatcaattggatctcatccattatcgaaacatactctgttaagtgtaaactccataaagatatggaaaaggaaagagagaaattctgcatagagaaaggaataggaaggaggtggaggacattacctccagttgctattgtatctgaaaattctgtaatgcaaaaatagatggaacatattacatctttcttacttttgtgacaggttgataacttgaactccctaaggaaagcagatatcagtccaacaaaggtttctttttagttcttggcaccaaacatttgtttatcactttatcctgaatgatttcctgagaaattttcttgcatgaatccatattgttgatttgacaaaaattagaaagggtttccaaatagacaagcacataagtgtgtacctacataagattggtacaagtaatatggcatgcccagcccaaataaggtttaatgatttggattgttcatgcataagacatggaagatctattgctacacttctatttatctggtgtcatagtttttggtcacctttagctaggaagtcattcaaatgtgtagagaattgttgatataatattcttgtcttatgacttgtaagcattttagatttcacaatttgaaattgttgcttaacaccttacagacagatctgtggcatggttagtttagaaaatgctgtgcatttttcactatttggtccacatatttttatataacacagattgtacaagtgtattcttgtcggaagtataattggtacttgtttatgtattacctaaggagattgcagaatctgaagttctgaacaaagaaggatattaatttattctaattttgcttgttatacttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcaggtagctaaagcattaattgaactgtttggcgaaatgatttttgtacatggttttgttcatggcgatcctcatcctggaaatatattagtttctcctcaaggccaagggaaattttcattaggtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattaggtcctcatcgtttgcccatatttcttaataagctaaaatggcttattagggaacaaaaattaatttgtaggtaaaacttttatatatgtgttcatatcgacttaaaagccatctgaaaaagaaactatgtttaaaatatcttaaaatcaacttcaaaattaagtttgaaaaatcaaattttggcttttgctttggcttattagtgcaaagcaatggggctctaagaatgtacggtatggtgagaagcacatggtttgaagagagtagacacttaatatattccagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccatatttttgcagtgctgcttgatcatggaatttataaagaattag</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189662.1 RefSeq:Os11g0549635]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os09g0470500

2014-06-10T10:43:12Z

Littlescrew: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution, even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA. ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).[[File:Oshox-1.jpg|right|thumb|430px|'''Figure 2B.''' Nuclear localization of Oshox4 protein. GFP alone was localized in cytosol of onion skin cells. (a)Oshox4-GFP; Nuclear localised; (c) DAPI staining; (d) a bright light image. Bar=50lm.(from reference) <ref name="ref4" />.]]

===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A).
[[File:Oshox-2.jpg|right|thumb|300px|'''Figure 3A.'''Over-expression of ''Oshox4'' induced a semi-dwarf phenotype in transgenic rice. (A) Comparison between wild type and an ''Oshox4'' over-expressing line (H4) at vegetative and reproductive stages. Bars=15 cm.(from reference) <ref name="ref4" />.'']]

This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
[[File:Oshox-3.jpg|right|thumb|430px|'''Figure 5.''' Growth of ''Oshox4''-over expressing and wild type plants treated with GA3 at different concentrations. Wild type (a) and ''Oshox4''-overexpressing plants (b) at four-leaf stage were transferred to hydroponic culture media containing GA3 at the concentration of 0 (1), 0.01 (2), 0.05 (3), 0.1 (4), 0.5 (5), 1 (6), 10 (7), or 20lM (8). The lengths of the second leaf sheaths were measured 12 days after the treatment. (from reference) <ref name="ref4" />.'']]

In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
*National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China
*Institut de Biotechnologie des Plantes, Universite ´ de Paris-sud 11, France
*Laboratory of Cellular Signaling and Molecular Pharmacology,
*Institute of Biology, National Center for Scientific Research, Greece
*Research Center for Biotechnology, Indonesian Institute of Sciences (LIPI), Indonesia
*Department of Physiological Botany, EBC, Uppsala University, Sweden

==References==
<references>
<ref name="ref1">Adamantia Agalou, Sigit Purwantomo, Elin O¨verna¨s et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol (2008) 66:87–103.</ref>
<ref name="ref2">Sessa G, Carabelli M, Ruberti I (1994) Identification of distinct families of HD-Zip proteins inArabidopsis thaliana. In: Coruzzi GP (ed) Plant molecular biology. Springer-Verlag, Berlin, pp 412–426.</ref>
<ref name="ref3">A. H. Meijer, R. J. de Kam, I. d'Erfurth, W. Shen, J. H. C. Hoge. HD-Zip proteins of families I and II from rice: interactions and functional properties. Molecular and General Genetics MGG, February 2000, Volume 263, Issue 1, pp 12-21.</ref>
<ref name="ref4">Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou. Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses. Plant Mol Biol (2008) 66:289–301.</ref>
<ref name="ref5">Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX (2007a) The rice ''YABBY1'' gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 144:121–133.</ref>
<ref name="ref6">Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomorphogenesis in darkness. Plant Physiol 134:1050–1057.</ref>
<ref name="ref7">Kaneko M, Itoh H, Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Ashikari M, Matsuoka M (2003) Where do gibberellin biosynthesis and gibberellin signalling occur in rice plants? Plant J 35:104–115.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0470500

2014-06-10T10:36:58Z

Littlescrew: /* Mutant */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution, even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA. ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).[[File:Oshox-1.jpg|right|thumb|430px|'''Figure 2B.''' Nuclear localization of Oshox4 protein. GFP alone was localized in cytosol of onion skin cells. (a)Oshox4-GFP; Nuclear localised; (c) DAPI staining; (d) a bright light image. Bar=50lm.(from reference) <ref name="ref4" />.]]

===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A).
[[File:Oshox-2.jpg|right|thumb|300px|'''Figure 3A.'''Over-expression of ''Oshox4'' induced a semi-dwarf phenotype in transgenic rice. (A) Comparison between wild type and an ''Oshox4'' over-expressing line (H4) at vegetative and reproductive stages. Bars=15 cm.(from reference) <ref name="ref4" />.'']]

This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
[[File:Oshox-3.jpg|right|thumb|430px|'''Figure 5.''' Growth of ''Oshox4''-over expressing and wild type plants treated with GA3 at different concentrations. Wild type (a) and ''Oshox4''-overexpressing plants (b) at four-leaf stage were transferred to hydroponic culture media containing GA3 at the concentration of 0 (1), 0.01 (2), 0.05 (3), 0.1 (4), 0.5 (5), 1 (6), 10 (7), or 20lM (8). The lengths of the second leaf sheaths were measured 12 days after the treatment. (from reference) <ref name="ref4" />.'']]

In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Adamantia Agalou, Sigit Purwantomo, Elin O¨verna¨s et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol (2008) 66:87–103.</ref>
<ref name="ref2">Sessa G, Carabelli M, Ruberti I (1994) Identification of distinct families of HD-Zip proteins inArabidopsis thaliana. In: Coruzzi GP (ed) Plant molecular biology. Springer-Verlag, Berlin, pp 412–426.</ref>
<ref name="ref3">A. H. Meijer, R. J. de Kam, I. d'Erfurth, W. Shen, J. H. C. Hoge. HD-Zip proteins of families I and II from rice: interactions and functional properties. Molecular and General Genetics MGG, February 2000, Volume 263, Issue 1, pp 12-21.</ref>
<ref name="ref4">Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou. Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses. Plant Mol Biol (2008) 66:289–301.</ref>
<ref name="ref5">Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX (2007a) The rice ''YABBY1'' gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 144:121–133.</ref>
<ref name="ref6">Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomorphogenesis in darkness. Plant Physiol 134:1050–1057.</ref>
<ref name="ref7">Kaneko M, Itoh H, Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Ashikari M, Matsuoka M (2003) Where do gibberellin biosynthesis and gibberellin signalling occur in rice plants? Plant J 35:104–115.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0470500

2014-06-10T10:30:17Z

Littlescrew: /* Subcellular localization */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution, even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA. ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).[[File:Oshox-1.jpg|right|thumb|430px|'''Figure 2B.''' Nuclear localization of Oshox4 protein. GFP alone was localized in cytosol of onion skin cells. (a)Oshox4-GFP; Nuclear localised; (c) DAPI staining; (d) a bright light image. Bar=50lm.(from reference) <ref name="ref4" />.]]

===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A). This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Adamantia Agalou, Sigit Purwantomo, Elin O¨verna¨s et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol (2008) 66:87–103.</ref>
<ref name="ref2">Sessa G, Carabelli M, Ruberti I (1994) Identification of distinct families of HD-Zip proteins inArabidopsis thaliana. In: Coruzzi GP (ed) Plant molecular biology. Springer-Verlag, Berlin, pp 412–426.</ref>
<ref name="ref3">A. H. Meijer, R. J. de Kam, I. d'Erfurth, W. Shen, J. H. C. Hoge. HD-Zip proteins of families I and II from rice: interactions and functional properties. Molecular and General Genetics MGG, February 2000, Volume 263, Issue 1, pp 12-21.</ref>
<ref name="ref4">Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou. Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses. Plant Mol Biol (2008) 66:289–301.</ref>
<ref name="ref5">Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX (2007a) The rice ''YABBY1'' gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 144:121–133.</ref>
<ref name="ref6">Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomorphogenesis in darkness. Plant Physiol 134:1050–1057.</ref>
<ref name="ref7">Kaneko M, Itoh H, Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Ashikari M, Matsuoka M (2003) Where do gibberellin biosynthesis and gibberellin signalling occur in rice plants? Plant J 35:104–115.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

File:Oshox-3.jpg

2014-06-10T09:33:20Z

Littlescrew: Fig. 5 Growth of Oshox4-over expressing and wild type plants treated with GA3 at different concentrations. Wild type (a) and Oshox4-overexpressing plants (b) at four-leaf stage were transferred to hydroponic culture media containing GA3 at the concentrati

Fig. 5 Growth of Oshox4-over expressing and wild type plants treated with GA3 at different concentrations. Wild type (a) and Oshox4-overexpressing plants (b) at four-leaf stage were transferred to hydroponic culture media containing GA3 at the concentration of 0 (1), 0.01 (2), 0.05 (3), 0.1 (4), 0.5 (5), 1 (6), 10 (7), or 20lM (8). The lengths of the second leaf sheaths were measured 12 days after the treatment.

File:Oshox-2.jpg

2014-06-10T09:32:30Z

Littlescrew: Fig. 3 Over-expression ofOshox4induced a semi-dwarf phenotype in transgenic rice. (A) Comparison between wild type and an Oshox4 over-expressing line (H4) at vegetative and reproductive stages. Bars=15 cm.

Fig. 3 Over-expression ofOshox4induced a semi-dwarf phenotype in transgenic rice. (A) Comparison between wild type and an Oshox4 over-expressing line (H4) at vegetative and reproductive stages. Bars=15 cm.

File:Oshox-1.jpg

2014-06-10T09:31:11Z

Littlescrew: Fig.2 (B) Nuclear localization of Oshox4 protein. GFP alone was localized in cytosol of onion skin cells. (a)Oshox4-GFP; Nuclear localised; (c) DAPI staining; (d) a bright light image. Bar=50lm.

Fig.2 (B) Nuclear localization of Oshox4 protein. GFP alone was localized in cytosol of onion skin cells. (a)Oshox4-GFP; Nuclear localised; (c) DAPI staining; (d) a bright light image. Bar=50lm.

Os09g0470500

2014-06-10T09:28:38Z

Littlescrew: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution, even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA. ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).
===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A). This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Adamantia Agalou, Sigit Purwantomo, Elin O¨verna¨s et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol (2008) 66:87–103.</ref>
<ref name="ref2">Sessa G, Carabelli M, Ruberti I (1994) Identification of distinct families of HD-Zip proteins inArabidopsis thaliana. In: Coruzzi GP (ed) Plant molecular biology. Springer-Verlag, Berlin, pp 412–426.</ref>
<ref name="ref3">A. H. Meijer, R. J. de Kam, I. d'Erfurth, W. Shen, J. H. C. Hoge. HD-Zip proteins of families I and II from rice: interactions and functional properties. Molecular and General Genetics MGG, February 2000, Volume 263, Issue 1, pp 12-21.</ref>
<ref name="ref4">Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou. Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses. Plant Mol Biol (2008) 66:289–301.</ref>
<ref name="ref5">Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX (2007a) The rice ''YABBY1'' gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 144:121–133.</ref>
<ref name="ref6">Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomorphogenesis in darkness. Plant Physiol 134:1050–1057.</ref>
<ref name="ref7">Kaneko M, Itoh H, Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Ashikari M, Matsuoka M (2003) Where do gibberellin biosynthesis and gibberellin signalling occur in rice plants? Plant J 35:104–115.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0470500

2014-06-10T08:47:23Z

Littlescrew: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution (Fig. 2A, a,b), even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA (Fig. 2A, c–e). ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).
===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A). This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
Please input related labs here.

==References==
<references>
<ref name="ref1">Adamantia Agalou, Sigit Purwantomo, Elin O¨verna¨s et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol (2008) 66:87–103.</ref>
<ref name="ref2">Sessa G, Carabelli M, Ruberti I (1994) Identification of distinct families of HD-Zip proteins inArabidopsis thaliana. In: Coruzzi GP (ed) Plant molecular biology. Springer-Verlag, Berlin, pp 412–426.</ref>
<ref name="ref3">A. H. Meijer, R. J. de Kam, I. d'Erfurth, W. Shen, J. H. C. Hoge. HD-Zip proteins of families I and II from rice: interactions and functional properties. Molecular and General Genetics MGG, February 2000, Volume 263, Issue 1, pp 12-21.</ref>
<ref name="ref4">Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou. Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses. Plant Mol Biol (2008) 66:289–301.</ref>
<ref name="ref5">Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX (2007a) The rice ''YABBY1'' gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 144:121–133.</ref>
<ref name="ref6">Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL (2004) Gibberellins repress photomorphogenesis in darkness. Plant Physiol 134:1050–1057.</ref>
<ref name="ref7">Kaneko M, Itoh H, Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Ashikari M, Matsuoka M (2003) Where do gibberellin biosynthesis and gibberellin signalling occur in rice plants? Plant J 35:104–115.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0470500

2014-06-10T08:43:29Z

Littlescrew: /* Evolution */

Please input one-sentence summary here.

==Annotated Information==
===Function===
''Oshox4'' belongs to the homeodomain leucine zipper (HD-Zip) genes that encode transcription factors that contain conserved DNA motif called the homeobox<ref name="ref1" />. There are four family members in HD-Zip including I, I, II, III and IV <ref name="ref2" />, and Oshox4 which locates in chromosome 9 belongs to HD-Zip I. In addition, it is suggested that all HD-Zip I and II proteins family members can form homodimers and also heterodimers<ref name="ref3" />.

===Expression===
''Oshox4'' expresses in leaf primordial of shoot apex, and in young leaves without polar distribution (Fig. 2A, a,b), even though being enhanced in upper and lower epidermis and vascular bundles surrounding cells. In addition, from floral meristems, floral organ primordia and the embryonic axis, we can detect Oshox4 mRNA (Fig. 2A, c–e). ''Oshox4'' expresses more in drought resistant than in drought-sensitive rice cultivars <ref name="ref1" />.
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).

===Evolution===
Please input evolution information here.
===Subcellular localization===
To understand the subcellular localization of ''Oshox4'', researchers fused Oshox4 with enhanced green fluorescence protein to produce recombinant proteins at the downstream of cauliflower mosaic virus (CaMV) 35S promoter and introduced into the onion cells. The confocal microscopy pictures show that fusion protein was localized in the nuclei of the onion cells <ref name="ref4" />(Fig. 2B).
===Mutant===
When Oshox4 is over expressed in more than 40 independent transgenic T0 plants, there are 27 semi-dwarf phenotype plants that possess only a half of the wild ones as well as two times tillers than the normal wild plants (Fig. 3A). This may due to the reduced transgenic plants cell elongation that occurs in epidermal, elongating and intercalary meristem cells compared to wild type. And Oshox4 may interact with the fragment corresponding to -1080 to-1662 from the initiation ATG codon of the ''YAB1''. Further experiments show that these Oshox4-over-expression plants with semi-dwarf cannot be rescued by adding GA3 (Fig 5), but the mutant plants with semi-dwarf caused by YAB1-over-expression can rehabilitate to the same height of the wild type <ref name="ref5" />.
In Oshox4 over expressed mutants, both the GA metabolic gene expression and the amylase production change. At the same time, the GA upregulate the expression level of ''Oshox4''<ref name="ref4" />. Oshox4 knock-down plants by the expression of RNAi vector with a gene-specific segmet of ''Oshox4'' show no significant changes, which may due to the function of other HD-Zip I in rice <ref name="ref4" />.

Considering the previous reports about Arabidopsis<ref name="ref6" /> and gibberellin biosynthesis <ref name="ref7" /> and other evidences, it is predicted that Oshox4 function in GA signaling.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0470500|
Description = Homeodomain leucine zipper protein|
Version = NM_001069971.1 GI:115479684 GeneID:4347333|
Length = 1716 bp|
Definition = Oryza sativa Japonica Group Os09g0470500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18556879..18558594|
CDS = 18557207..18557276,18557394..18557740,18557867..18558283|
GCID = <gbrowseImage1>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18556879..18558594
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactga</cdnaseq>|
AA = <aaseq>MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMA CGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRAR WKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK EEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAG AGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHW N</aaseq>|
DNA = <dnaseqindica>329..398#516..862#989..1405#gaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtggtaatctttgttctttggttttccttttgtggcaattcattctttggaggtgatggtgtagtgtgatatgtgcgggaaattgagtgttttgtaattgtacatgcgtgttttgattagatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgaggtacgtgccgactgagtcgctgccctgccgtgccgcctgagctgttgctctgcgtgactgcgtcgagcagtcgttcgtttgcgcgcataatgtctgatggcttcttggtcgcgcgaattgtggcagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcactagcagtaggatggt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069971.1 RefSeq:Os09g0470500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]