http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=LiuxianjuRiceWiki - User contributions [en]2026-05-08T17:41:45ZUser contributionsMediaWiki 1.30.0https://ngdc.cncb.ac.cn/ricewiki/index.php?title=GID1&diff=183667GID12014-06-10T13:57:28Z<p>Liuxianju: Created page with "常规信息 基因(座)名称 GA不敏感矮秆基因 GA-insensitive dwarf 1 基因符号 GID1 所在染色体 5 （已克隆） GID1 编码一个可溶的赤霉素受体，..."</p>
<hr />
<div>常规信息<br />
基因(座)名称 GA不敏感矮秆基因 GA-insensitive dwarf 1<br />
基因符号 GID1<br />
所在染色体 5 （已克隆）<br />
GID1 编码一个可溶的赤霉素受体，介导水稻中GA 的信号传导，影响水稻的株高。<br />
【表型特征】<br />
8 份GA 不敏感突变体(GA-insensitive dwarf mutant 1, gid1)材料，其中，gid1-1, gid1-2, gid1-3, gid1-4, gid1-6 株高严重矮化、不育，gid1-8 的表型温和，株高稍矮、可育，gid1-7 株高为gid1-8 的一半、不育。另外，gid1-1/slr1-1 双突变体表现出slr 的特性，表明slr 对gid1 上位(Miyako et al., 2005, 2007)。<br />
【基因克隆与生物学功能分析】<br />
GID1 cDNA 全长2156bp，包含有2 个外显子，编码一条354 氨基酸长的多肽。其中gid1-1, gid1-2, gid1-5, gid1-8 由于单碱基突变，分别造成产物中第196, 251, 169, 45 位氨基酸发生置换；gid1-3, gid1-6, gid1-7 由于外显子2 中多个碱基缺失，造成产物中相应缺少50, 11, 1 个氨基酸；而gid1-4 是由于跨内含子1 与外显子2 的302 bp 碱基缺失(Miyako et al., 2005, 2007)。<br />
GID1 基因编码1 个可溶性的GA 信号受体，类似于激素敏感的脂肪酶，是一个核定位蛋白，且对具有生物活性的GAs 具有高度的亲和性，GID1 过量表达表现出GA 高敏感性表型。推测GID1 与有生物活性的GA 相结合，获得了与SLR 互作的能力，从而形成GID1-GA-SLR1 复合体，其结果是SLR 通过SCFGID2 蛋白酶复合体途径降解，使GA 信号得以下传(Miyako et al., 2005, 2007)。<br />
GID1 对GA4 的结合具有偏好性。SLR1 蛋白的DELLA 和TVHYNP 结构域是SLR1 与GID1 结合所必需；除了N 端前15 个氨基酸外，GID1 蛋白大部分氨基酸残基都是GID1 与SLR1 结合所必需(Miyako et al., 2007)。<br />
一个水稻gid1 抑制突变体表明赤霉素对其受体GID1与DELLA蛋白的互作不是必需的（Yamamoto et al., 2010）。<br />
gid1 突变体中，逆滲透蛋白、磷酸丙糖异构酶、噻菌灵诱导蛋白(PBZ1)和病程相关蛋白10(PR-10)含量增加；赤霉素合成酶基因OsCPS1 表达下调，而植物抗毒素合成酶基因OsCPS2 和OsCPS4 表达上调。GID1 与水稻耐受冷胁迫和抗稻瘟病有关(Tanaka et al., 2006)。<br />
【相关登录号】<br />
NCBI GeneBank：AB211399<br />
RAP-DB：Os05g0407500<br />
MSU：LOC_Os05g33730<br />
·遗传(物理)图谱<br />
# 图谱名称 连锁群 开始位置 终止位置<br />
1 日本晴序列注释图谱(2008) 5 19926497 19929295<br />
·ONTOLOGY及相关基因<br />
表型特征 茎秆长度(TO:0000576), 酶活性(TO:0000599), 对赤霉素钝感(TO:0100166), 矮秆或半矮秆(TO:0100207)<br />
分子功能 脂肪酶活性(GO:0016298)<br />
生物进程 细胞伸长(GO:0009826), 对赤酶素刺激的反应(GO:0009739), 赤霉素信号传导(GO:0009740)<br />
形态构造 茎秆(PO:0009047)<br />
生育时期 分蘖期(GRO:0007049), 拔节期(GRO:0007048)<br />
·参考文献<br />
1. Ko Hirano;Kenji Asano;Hiroyuki Tsuji;Mayuko Kawamura;Hitoshi Mori;Hidemi Kitano;Miyako Ueguchi-Tanaka;Makoto Matsuoka<br />
Characterization of the Molecular Mechanism Underlying Gibberellin Perception Complex Formation in Rice<br />
The Plant Cell, 2010, 22(8): 2680-2696<br />
2. Yuko Yamamoto;Takaaki Hirai;Eiji Yamamoto;Mayuko Kawamura;Tomomi Sato;Hidemi Kitano;Makoto Matsuoka;Miyako Ueguchi-Tanaka<br />
A Rice gid1 Suppressor Mutant Reveals That Gibberellin Is Not Always Required for Interaction between Its Receptor, GID1, and DELLA Proteins<br />
The Plant Cell, 2010, 22(11): 3589-3602<br />
3. Miyako Ueguchi-Tanaka;Masatoshi Nakajima;Etsuko Katoh;Hiroko Ohmiya;Kenji Asano;Shoko Saji;Xiang Hongyu;Motoyuki Ashikari;Hidemi Kitanoa;Isomaro Yamaguchi;Makoto Matsuoka<br />
Molecular Interactions of a Soluble Gibberellin Receptor, GID1, with a Rice DELLA Protein, SLR1, and Gibberellin<br />
The Plant Cell, 2007, 19(7): 2140-2155<br />
4. NAOKI TANAKA;MAKOTO MATSUOKA;HIDEMI KITANO;TAKAYUKI ASANO;HISATOSHI KAKU;SETSUKO KOMATSU<br />
gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack<br />
Plant, Cell & Environment, 2006, 29(4): 619-631<br />
5. Miyako Ueguchi-Tanaka;Motoyuki Ashikari;Masatoshi Nakajima;Hironori Itoh;Etsuko Katoh;Masatomo Kobayashi;Teh-yuan Chow;Yue-ie C. Hsing;Hidemi Kitano;Isomaro Yamaguchi;Makoto Matsuoka<br />
GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin<br />
Nature, 2005, 437(7059): 693-698</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=BZIP_transcription_factor&diff=183651BZIP transcription factor2014-06-10T13:41:09Z<p>Liuxianju: Created page with "·常规信息 基因(座)名称 bZIP转录因子 bZIP transcription factor 基因符号 OsbZIP22 所在染色体 2 （已克隆） 【相关登录号】 RAP-DB：Os02g072800..."</p>
<hr />
<div>·常规信息<br />
基因(座)名称 bZIP转录因子 bZIP transcription factor<br />
基因符号 OsbZIP22<br />
所在染色体 2 （已克隆）<br />
【相关登录号】<br />
RAP-DB：Os02g0728001<br />
MSU：LOC_Os02g49560<br />
·参考文献<br />
1. Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang<br />
Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa<br />
Journal of Shanghai University (English Edition), 2009, 13(2): 174-182<br />
2. Aashima Nijhawan;Mukesh Jain;Akhilesh K. Tyagi;Jitendra P. Khurana<br />
Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice<br />
Plant Physiology, 2008, 146(2): 333-350</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Waxy_gene&diff=183615Waxy gene2014-06-10T13:14:21Z<p>Liuxianju: Created page with "常规信息 基因(座)名称 蜡质基因 waxy gene 基因符号 wx; qGC-6; Wx-mq; Wx-op 所在染色体 6 （已克隆） 供体材料 Hengfeng 水稻Wx 基因编码颗粒..."</p>
<hr />
<div>常规信息<br />
基因(座)名称 蜡质基因 waxy gene<br />
基因符号 wx; qGC-6; Wx-mq; Wx-op<br />
所在染色体 6 （已克隆）<br />
供体材料 Hengfeng<br />
水稻Wx 基因编码颗粒淀粉合成酶(granule-bound starch synthase, GBSS)，是控制直链淀粉合成的主效基因，直接影响水稻胚乳和花粉中直链淀粉的含量(Amylose Content, AC)。非糯性基因(Wx)对糯性基因(wx)表现为不完全显性，存在较为明显的剂量效应。<br />
在非糯品种中，Wx 基因分化为Wxa 和Wxb 两种等位基因，其中，野生稻全为Wxa ，籼稻以Wxa 为主，直链淀粉含量较高；粳稻基本为Wxb ，直链淀粉含量较低。这表明Wxb 基因是由Wxa 基因进化而来(Sano, 1984; Sano et al.1986)。Wx 基因位于第6 染色体的短臂，早在1990 年就已被克隆。粳型品种Hengfeng 的wx 基因由14 个外显子和13 个内含子组成，编码由609个氨基酸组成的蛋白(Wang et al., 1990)。来自ARC6622 的等位基因Wxop 和来自Milky Queen 的等位基因Wx-mq 引起水稻胚乳的直链淀粉含量降低（Mikami et al., 1999; Sato et al. 2002）。<br />
在灌浆期的籽粒中，Wx 基因有2 种mRNA 转录产物，长度分别为2.3 kb 和3.3 kb，糯稻品种和高AC 的品种分别只有3.3 kb 和2.3kb 的mRNA，而中等AC 的品种二者兼有之，Wx 蛋白与2.3 kb 的mRNA 的含量存在显著相关性。研究发现，3.3 kb 的mRNA 实际上是Wx 转录的mRNA 前体，而2.3 kb RNA 为翻译Wx 蛋白的mRNA，它由3.3 kb 的Wx mRNA 切除第一个1.0 kb 的内含子后产生。因此，AC 的调控属转录后调控，与切除内含子的能力有关(Wang et al., 1995)。序列分析表明，与Wxa 相比，Wxb 的第1内含子5'端剪切处发生由GT→TT的突变，导致第1 内含子剪接效率降低及剪接不正常，粳型品种中成熟Wx 转录本含量降低，β-葡萄糖醛酸酶活性下降，从而引起直链淀粉含量下降(Hirano et al., 1998; Isshiki et al., 1998)。序列分析表明，Wxop 基因第1内含子5'端的剪切位核苷酸与Wxa 一致(均是GT)，与Wxb 的TT不同，表明Wxop 由Wxa 进化而来，独立于Wxb （Mikami et al., 1999）。<br />
李家洋、钱前与顾铭洪研究组合作，通过关联分析等手段对淀粉生物合成途径中的18个基因进行系统研究，发现这些基因之间的关系，从而揭示了调控稻米食用和蒸煮品质的精细调控网络：通过影响直链淀粉含量(AC)、胶稠度(GC)和糊化温度(GT)形成的复杂遗传网络来决定稻米蒸煮与食味品质(ECQs)。其中，Wx和SSII-3是2个主要的通过影响AC、GC和GT来决定ECQs的基因，Wx是唯一对AC和GC具有主效作用的基因，而对GT具有微效性；SSII-3是唯一对GT具有主效作用，而对AC和GC具有微效性的基因。在消除主效基因的影响后，分别检测到2个微效基因同时影响2个品质性状：ISA和SBE3同时对GC和GT有微效作用；也检测到微效基因对每个品质性状的特定作用：SSIII-2、AGPlar、PUL和SSI 4个基因只对AC有微效作用，AGPiso只对GC有微效影响，而SSIV-2只对GT有微效影响。同时本研究还表明，各个不同的淀粉合成相关基因(SSRGs)在淀粉合成的不同阶段对品质性状产生影响。这一结论得到了遗传转化实验的证实。此外，相关性分析和遗传转化为水稻育种提供了至关重要的信息，便于对水稻其它重要农艺性状的调查研究，也适用于对其它重要农作物的研究（Tian et al., 2009）。<br />
Wx 除了影响籽粒淀粉含量，还能够调节胶稠度，图位克隆证实其就是控制粳/籼杂交胶稠度的主效QTL qGC-6（Su et al. 2011）<br />
用RT-PCR方法成功克隆了Wx-mq 基因，与Wx-b 基因cDNA全长序列相比，Wx-mq 的序列发生了2个位点的突变：一个是第497位核苷酸由G突变为A，另一个是第595位核苷酸由T突变为C。这两个突变导致编码产物也发生相应变化：第158位氨基酸由精氨酸置换为组氨酸，第191位氨基酸由酪氨酸置换为组氨酸。推测Wx-mq 的这2个错义突变是造成"Milky Queen"直链淀粉含量下降的原因（Sato et al., 2002）。<br />
【Wx 座上的微卫星序列】<br />
Wx 基因序列存在一个(CT)n 微卫星片段，在Wx 座位上具有微卫星多态性，并鉴定出8 个不同的Wx 等位基因(Ayres et al., 1997)。舒庆尧等在74 个中国非糯籼稻和粳稻品种中也发现7 种(CT)n 多态。<br />
【相关登录号】<br />
NCBI GeneBank：EU735072, AF031162, AF141954, AF141955<br />
RAP-DB：Os06g0133000<br />
MSU：LOC_Os06g04200<br />
·遗传(物理)图谱<br />
# 图谱名称 连锁群 开始位置 终止位置<br />
1 日本晴序列注释图谱(2008) 6 1765922 1769401<br />
·ONTOLOGY及相关基因<br />
表型特征 粘性胚乳(TO:0000098), 直链淀粉含量(TO:0000196)<br />
分子功能 肝糖合成酶活性(GO:0004373)<br />
生物进程 淀粉代谢过程(GO:0005982)<br />
细胞结构 质体(GO:0009536), 淀粉体淀粉粒(GO:0009568), 淀粉体(GO:0009501)<br />
形态构造 胚乳(PO:0009089)<br />
·参考文献<br />
1. Ming-Zhou Zhang;Jie-Hong Fang;Xia Yan;Jun Liu;Jin-Song Bao;Gunnel Fransson;Roger Andersson;Christer Jansson;Per Åman;Chuanxin Sun<br />
Molecular insights into how a deficiency of amylose affects carbon allocation -- carbohydrate and oil analyses and gene expression profiling in the seeds of a rice waxy mutant<br />
BMC Plant Biology, 2012, 12: 230<br />
2. Yan Su;Yuchun Rao;Shikai Hu;Yaolong Yang;Zhenyu Gao;Guanghen Zhang;Jian Liu;Jiang Hu;Meixian Yan;Guojun Dong;Li Zhu;Longbiao Guo;Qian Qian;Dali Zeng<br />
Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.)<br />
Theoretical and Applied Genetics, 2011, 123(5): 859-867<br />
3. 姚姝;陈涛;张亚东;朱镇;赵凌;赵庆勇;周丽慧;王才林<br />
分子标记辅助选择聚合水稻暗胚乳突变基因Wx-mq和抗条纹叶枯病基因Stv-bi<br />
中国水稻科学, 2010, 24(4): 341-347<br />
4. Zhixi Tian;Qian Qian;Qiaoquan Liu;Meixian Yan;Xinfang Liu;Changjie Yan;Guifu Liu;Zhenyu Gao;Shuzhu Tang;Dali Zeng;Yonghong Wang;Jianming Yu;Minghong Gu;Jiayang Li<br />
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities<br />
Proceedings of the National Academy of Sciences, 2009, 106(51): 21760-21765<br />
5. P. Jayamani;S. Negrão;C. Brites;M.M. Oliveira<br />
Potential of Waxy gene microsatellite and single-nucleotide polymorphisms to develop japonica varieties with desired amylose levels in rice (Oryza sativa L.)<br />
Journal of Cereal Science, 2007, 46(2): 178-186<br />
6. 张娅丽; 许明辉; 曾亚文; 姚春馨; 陈善娜<br />
云南地方稻种Wx基因第一内含子供体+1位碱基变异与直链淀粉含量的关系<br />
中国水稻科学, 2007, 21(1): 20-24<br />
7. 刘玉花; 栾丽; 龙文波; 王兴; 孔繁伦; 何涛; 涂升斌<br />
同源四倍体和二倍体水稻Wx基因与淀粉品质的遗传关系<br />
中国水稻科学, 2007, 21(2): 143-149<br />
8. WAN Ying-xiu;DENG Qi-ming;WANG Shi-quan;LIU Ming-wei;ZHOU Hua-qiang;LI Ping<br />
Genetic Polymorphism of Wx Gene and Its Correlation with Main Grain Quality Characteristics in Rice<br />
Rice Science, 2007, 14(2): 85-93<br />
9. 陈刚; 王忠; 刘巧泉; 熊飞; 顾蕴洁; 顾国俊<br />
转反义Wx基因水稻颖果的发育及物质积累<br />
中国水稻科学, 2006, 20(3): 277-282<br />
10. 万映秀;邓其明;王世全;刘明伟;周华强;李平<br />
水稻Wx基因的遗传多态性及其与主要米质指标的相关性分析<br />
中国水稻科学, 2006, 20(6): 603-609<br />
11. CHEN Gang; WANG Zhong; LIU Qiao-quan; XIONG Fei; GU Yun-jie; GU Guo-jun<br />
Development and Substance Accumulation of Caryopsis in Transgenic Rice with Antisense Wx Gene<br />
Rice Science, 2006, 13(2): 106-112<br />
12. ZENG Rui-zhen; ZHANG Ze-min; HE Feng-hua; XI Zhang-ying; Akshay TALUKDAR; SHI Jun-qiong; QIN Li-jun; HUANG Chao-feng; ZHANG Gui-quan<br />
Identification of Multiple Alleles at the Wx Locus and Development of Single Segment Substitution Lines for the Alleles in Rice<br />
Rice Science, 2006, 13(1): 9-14<br />
13. 曾瑞珍; 张泽民; 何风华; 席章营; Akshay TALUKDAR; 施军琼; 秦利军; 黄朝锋; 张桂权<br />
水稻Wx复等位基因的鉴定及单片段代换系的建立<br />
中国水稻科学, 2005, 19(6): 495-500<br />
14. MAO Xing-xue; LIU Yan-zhuo; XIAO Xin; CHEN Jian-wei; LUO Wen-yong; LI Xiao-fang<br />
A One-Step PCR Method for Detecting the First Base of Splice Donor of Wx Intron 1 in Rice<br />
Rice Science, 2004, 11(5-6): 342-344<br />
15. Yamanaka-S;Nakamura-I;Watanabe-K-N;Sato-Y-I<br />
Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice<br />
Theoretical and Applied Genetics, 2004, 108(7): 1200-1204<br />
16. Zhongyi Li;Fei Sun;Shoumin Xu;Xiusheng Chu;Y. Mukai;M. Yamamoto;Shahjahan Ali;Lynette Rampling;Behjat Kosar-Hashemi;Sadequr Rahman;Matthew K. Morell<br />
The structural organisation of the gene encoding class II starch synthase of wheat and barley and the evolution of the genes encoding starch synthases in plants<br />
Functional & Integrative Genomics, 2003, 3(1-2): 76-85<br />
17. Y. Sato;T. Nishio<br />
Mutation detection in rice waxy mutants by PCR-RF-SSCP<br />
Theoretical and Applied Genetics, 2003, 107: 560-567<br />
18. Hiroyuki Sato; Yasuhiro Suzuki; Makoto Sakai and Tokio Imbe<br />
Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)<br />
Breeding Science, 2002, 52(2): 131-135<br />
19. 于恒秀; 刘巧泉; 陈秀花; 陆美芳; 王兴稳; 王宗阳; 顾铭洪<br />
根癌农杆菌介导的水稻转化系统的优化及转反义Wx基因植株的获得<br />
中国水稻科学, 2002, 16(4): 304-310<br />
20. Ichiho Mikami;Munetoshi Aikawa;Hiro-Yuki Hirano and Yoshio Sano<br />
Altered tissue-specific expression at the Wx gene of the opaque mutants in rice<br />
Euphytica, 1999, 105(2): 91-97<br />
21. Hiro-Yuki Hirano;Mitsugu Eiguchi;Yoshio Sano<br />
A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice<br />
Molecular Biology and Evolution, 1998, 15(8): 978-987<br />
22. Masayuki Isshiki;Kazuko Morino;Midori Nakajima;Ron J. Okagaki;Susan R. Wessler;Takeshi Izawa;Ko Shimamoto<br />
A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron<br />
The Plant Journal, 1998, 15(1): 133-138<br />
23. N. M. Ayres;A. M. McClung;P. D. Larkin;H. F. J. Bligh;C. A. Jones;W. D. Park<br />
Microsatellites and a single-nucleotide polymorphism differentiate apparentamylose classes in an extended pedigree of US rice germ plasm<br />
Theoretical and Applied Genetics, 1997, 94(6-7): 773-781<br />
24. Zong-Yang Wang;Fei-Qin Zheng;Ge-Zhi Shen;Ji-Ping Gao;D. Peter Snustad;Min-Gang Li;Jing-Liu Zhang;Meng-Min Hong<br />
The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene<br />
The Plant Journal, 1995, 7(4): 613-622<br />
25. 何祖华; 华金渭; 申宗坦<br />
水稻wx基因对籽粒糖类积累和萌发种子淀粉酶活力的影响<br />
中国水稻科学, 1994, 8(1): 21-26<br />
26. 郑柔; 奚永安; 林贻滋<br />
利用水稻糯与非糯(近)等基因系探讨WX基因对成熟胚培养力的影响<br />
中国水稻科学, 1993, 7(1): 7-10<br />
27. Zong-yang Wang; Zhi-liang Wu; Yan-yan Xing; Fei-gin Zheng; Xiao-Ii Guo; Wei-guo Zhang and Meng-min Hong<br />
Nucleotide sequence of rice waxy gene<br />
Nucleic Acids Research, 1990, 18(19): 5898-<br />
28. Yoshio Sano;Mitsuko Katsumata;Kazutoshi Okuno<br />
Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice<br />
Euphytica, 1986, 35(1): 1-9<br />
29. Y. Sano;M. Maekawa;H. Kikuchl<br />
Temperature effects on the Wx protein level and amylose content in the endosperm of rice<br />
Journal of Heredity, 1985, 76(3): 221-222<br />
30. Yoshio Sano<br />
Differential regulation of waxy gene expression in rice endosperm<br />
Theoretical and Applied Genetics, 1984, 68(5): 467-473</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Cytochrome_P450_gene&diff=183611Cytochrome P450 gene2014-06-10T13:10:31Z<p>Liuxianju: Created page with "CYP714B1 和CYP714B2 是2个细胞色素氧化酶P450基因，它们编码GA13-氧化酶，通过降低赤霉素的生物活性对水稻生长进行精细调控，并同时对..."</p>
<hr />
<div>CYP714B1 和CYP714B2 是2个细胞色素氧化酶P450基因，它们编码GA13-氧化酶，通过降低赤霉素的生物活性对水稻生长进行精细调控，并同时对赤霉素的内稳态起调控作用（Magome et al. 2013）。<br />
·参考文献<br />
1. Hiroshi Magome;Takahito Nomura;Atsushi Hanada;Noriko Takeda-Kamiya;Toshiyuki Ohnishi;Yuko Shinma;Takumi Katsumata;Hiroshi Kawaide;Yuji Kamiya;Shinjiro Yamaguchi<br />
CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice<br />
Proceedings of the National Academy of Sciences, 2013, 110(5): 1947-1952</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=AF465255.1&diff=183597AF465255.12014-06-10T12:59:31Z<p>Liuxianju: </p>
<hr />
<div>>gi|19422258|gb|AF465255.1| Oryza sativa cultivar Nipponbare gibberellin-20 oxidase (Sd-1) gene, complete cds<br />
CTAGATCAGAGCACACAGAGAAAAAAATATAGACACCTTGGAAATTTGTCACAAAGAGACAAGGTGACTC<br />
AACAGGCCCTCCAAACTGAAAATTTAATTACTTGCTCAAGATTTAAATATAACTACCCATCCAGTTTTTA<br />
ATATATAAAGTTGTTAACTTTTAAACATATATATGTTTCACTGTTCTTATAATGTATTTTATCATTAAAC<br />
ATACTTTAAAACATATGGCTTATGTTTTTGAATATTTATATTAAAAATTTTAAATAAGATTAATGATCAA<br />
ACGTATATTTACTAGTTAACGACATCATGTATTAAAAATCGGAGGAGGTATAGAAGTATGTTCTCCTTTC<br />
TTGTAAACATAGGTTGATCTGTATATTTGTTTTTGTCTTATTTTGTTTTTTCATTGATCTCACCATTAAA<br />
CAGGTGGCCTCCAAAAATGCATGCAGCCATGTATCTTCCCAGTCCATGAAATTAATCTTGAATTATTATA<br />
AATTAAAAACATATTAGGATTTGATATATGAAAGGTATAATGGTAGCAGATCTATCATAGAAAACCTATA<br />
ACACGTAGATGACCGAGTAGAGAAAAAAGATATACCCAACATAATCAAGTACCTTGTTAATTAGTAAGAA<br />
GTAAGAAAACCATATAAATACAAGCATTTGGGTGAAGCTAGAATGGGAACTATATTACCATGTATCCCAT<br />
ACATATCTATTACGCACTTAATACCTGAATTATTCGTGTAACGAAGAACATGCTTTGGTAAAAAATAAAA<br />
TATTTGGACCGTATACCATGCGGTTATCGCAGTTATCACGTGCGGTAATATTCTCAGTTTTTCAAACCGC<br />
GGTATAACTTGCAATAACCGCGTGGTTTTCGCGGTAACCACCAAACCGTGGGGCTGTGGTAACCCCACCT<br />
AAAACGATTTGGTAAACCCTAGTCAGAGCTAGCTTGATCGTGGCTCCGCCCTCTGCATCTCCTCATGGTC<br />
ACAAGATCAATTTAGAACCTCTTATAAGCTGTTGAACCATCAGTACTACAGTCCCAAGATTAACATATTT<br />
TTTAAAATATCAAAATTGCTCATGATGAATTGATTACCGTTCATGTGCCTGTATGGTGCATGGGTGGTAT<br />
AGTGCACCGTGACCTGTACTGTGCTAGATGTTCCTTCCAACCTTAGTACTTCACGAAAAGGAGAGGAACC<br />
ATTTCCCTGTCACCTTCCTGCAACATGGTCAGGCATAAACCAAACACGATCGAAGCGAATCGGCGATACC<br />
ACACAATAGCCGCGCGTCGCAAACAACAATTCCGCGGCTAGCTACTTCCGACCTCCGAAACTACTGCGAG<br />
CCCAAGTGGGTACGGTTTTAGTGCAAATAGGGTAAGTCTTGTTTACATCATATCGGTTTCATTTTGGTAC<br />
ACGAATGGAGAAGAAATGAAAGAGATCGAAAAAAGGAAGAGCTCGCTGTGTATCTGTCTCGTAACAGCCC<br />
CGGTGTTACACGTGCTCTAAGAGAGATTAATTAAATCGATAAGCTACCAGAGGTTTAGTTTTCCACGTGT<br />
TAATTAGATTGGAAAGCGAGAGAAATTAAAAATAGCGAGTAAAAATAGAGATAACCTTATTGCTATTTTG<br />
TTTTTTTTCCAGCAACAAACTTATCTTTCAGGCTAGTTTAGGCGATCGCTTAGATTCCGCATCGTCCTTT<br />
TCACTATTTTTTTTCTGTCAGTGACAATGTGAAAATTTATTGGACAGACGACTAGCTTGTGGTACTAGCT<br />
AGGAAATTCCCTATCCTCGATATGAACAACTTACTCAACTCAGTAGAGTAGCAAATGCCCAAGAAAGCCC<br />
GAGTCAATCTATTTGGAAATCCAATCTATTTTCTCGTATTCGTGTGGGAAATCAAGCTATACTAGTTGAA<br />
ATTCACCGGAAGAAATGCACGCACTTCAATATACCAAAATTGCAAAGGAGAATCATTCGATTAACAGTGG<br />
AATTCAACCAAGAAATGAAAAGGTATATATAGGAAATGCACTCCAACCACCAACCAATAAGTGATTCCGG<br />
GCAATCAATTCTATCCGCGAGTTGTGGGTCTGTTCAGATTCATTATATTAGAACGCGTCACGTAATGGAT<br />
GGAGTATTATACAACACCATTGGTTTTGCCACTAGTGTTAACTCTAATACATGGGGGTTAGTTTTACCTT<br />
TAAACTTGGTCTAAAAGGATGGACATATGGCAATGCAATTGCATGGGGGTCATTGATTCGACCATCATGT<br />
CTGTCCAGTGGCAACCCCCTCCCTCATCCCCTGTGGTGGGCCCCCCACGGCGCTCGTCTTCTCCCCTGTT<br />
ACAAATACCCCACCCTCCTGCCCAGACAGCTCGCCCTGCACACACACACACACTCACACTCACACACGCT<br />
CTCAACTCACTCCCGCTCAACACAGCGCTCACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACG<br />
CCACCACAGCCGCACCAACCACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGG<br />
CGGCGGTGTGCGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCGAG<br />
GCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTGCTCCGCGACGGCGACGCCGAG<br />
GGGCTGCGCCGCGCCGCGGCGCAGGTGGCCGCCGCGTGCGCCACGCACGGGTTCTTCCAGGTGTCCGAGC<br />
ACGGCGTCGACGCCGCTCTGGCGCGCGCCGCGCTCGACGGCGCCAGCGACTTCTTCCGCCTCCCGCTCGC<br />
CGAGAAGCGCCGCGCGCGCCGCGTCCCGGGCACCGTGTCCGGCTACACCAGCGCCCACGCCGACCGCTTC<br />
GCCTCCAAGCTCCCATGGAAGGAGACCCTCTCCTTCGGCTTCCACGACCGCGCCGCCGCCCCCGTCGTCG<br />
CCGACTACTTCTCCAGCACCCTCGGCCCCGACTTCGCGCCAATGGGGTAATTAAAACGATGGTGGACGAC<br />
ATTGCATTTCAAATTCAAAACAAATTCAAAACACACCGACCGAGATTATGCTGAATTCAAACGCGTTTGT<br />
GCGCGCAGGAGGGTGTACCAGAAGTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCC<br />
TGGAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCTCAATCATGCG<br />
GTGCAACTACTACCCGCCATGCCCGGAGCCGGAGCGGACGCTCGGCACGGGCCCGCACTGCGACCCCACC<br />
GCCCTCACCATCCTCCTCCAGGACGACGTCGGCGGCCTCGAGGTCCTCGTCGACGGCGAATGGCGCCCCG<br />
TCAGCCCCGTCCCCGGCGCCATGGTCATCAACATCGGCGACACCTTCATGGTAAACCATCTCCTATTCTC<br />
CTCTCCTCTGTTCTCCTCTGCTTCGAAGCAACAGAACAAGTAATTCAAGCTTTTTTTTCTCTCTCGCGCG<br />
AAATTGACGAGAAAAATAAGATCGTGGTAGGGGCGGGGCTTTCAGCTGAAAGCGGGAAGAAACCGACCTG<br />
ACGTGATTTCTCTGTTCCAATCACAAACAATGGAATGCCCCACTCCTCCATGTGTTATGATTTATCTCAC<br />
ATCTTATAGTTAATAGGAGTAAGTAACAAGCTACTTTTTTCATATTATAGTTCGTTTGATTTTTTTTTTT<br />
TAAAGTTTTTTTAGTTTTATCCAAATTTATTGAAAAACTTAGCAACGTTTATAATACCAAATTAGTCTCA<br />
TTTAGTTTAATATTGTATATATTTTGATAATATATTTATGTTATATTAAAAATATTACTATATTTTTCTA<br />
TAAACATTATTAAAAGCCATTTATAATATAAAATGGAAGGAGTAATTAATATGGATCTCCCCCGACATGA<br />
GAATATTTTCCGATGGTGTGACGACGCCATGTAAGCTTCGGTGGGCCTGGACGGCCAGAGGTGCCAACAG<br />
CCACGTCCAACAACCCCTGGGTCCCCCCCTAACACTCCAAACAGTAGTGAGTAGTGTCTCGTCGCGTTTT<br />
AGTATTTGATGACAAACAAAGTGTGAGTTGAGTTAGCCACCACCAACTTGCACACGAGCACATACATTTG<br />
TGTCCATTCTCGCCAGTCACTTCCATCTCTAGTCCTAACTCCTATCTAGCGATGTAAGCGGATAATTTCA<br />
TCATCCGTATATAAACCTGTTTGTTATAGTTAATTTCCTATATAATACTATAACAGTATACATTTTAAAA<br />
GAAAACAAAATTAGGATAAACAGGCCCTGCTCCTATCCATCCATGGCACTTGGAAGGACCAGACTCGGTC<br />
ATGCCATGCCAAGCCAAGATATGGGTTATGGAAGAGTAGAGAAGAGGAGAGATGAGAGATAAGCATGCGT<br />
TCTCCTCCTCGTTGGATGTGTATTTTGGAGGGATTTGTGTAGTAGTAGCAGCGGCGCCGCGGGGACGGAT<br />
GCGGATGGTGGCGCTTTCGGTGGCGTTTTCCCGGGGGGGTTTTGGTTTGGCGCTTGGGGGGGATGGCATG<br />
GCGCGGCGTGCGGCTGCACGCCACACACACGCGCGCGCACGCACGTACGTCGTCGTCGCCGCGGGCGGAC<br />
GGTAGCTTAGGGTGGTGTGTTCCGCGCGCGGGCGCGGATTGTTCCATGCCGATCGATTTGGCGCCACCCT<br />
CGCCGCGGCTCTTGTCGCGTCGTGCGCCTCTCTCGCGCGGTTTGTCCTTGTCGCGTTGCTCAGCCGGCGA<br />
CGGGGGCACGGACATTGGCGATGTAGCCCTGCACGTGTCGGCCTCTCCGTTGATGAATGATGATGTATGT<br />
ATGTATTTTTTTTTGTCTGAAGGAATTTGTGGGGAATTGTTGTGTGTGCAGGCGCTGTCGAACGGGAGGT<br />
ATAAGAGCTGCCTGCACAGGGCGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTG<br />
CCCGCGGGAGGACAGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACC<br />
TGGGCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACGCCTTCACGC<br />
GCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGGCGGCCAGCTGATCGCCGAA<br />
CGGAACGAAACGGAACGAACAGAAGCCGATTTTTGGCGGGGCCCACGCCCACGTGAGGCCCCACGTGGAC<br />
AGTGGGCCCGGGCGGAGGTGGCACCCACGTGGACCGCGGGCCCCGCGCCGCCTTCCAATTTTGGACCCTA<br />
CCGCTGTACATATTCATATATTGCAAGAAGAAGCAAAACGTACGTGTGGGTTGGGTTGGGCTTCTCTCTA<br />
TTACTAAAAAAAATATAATGGAACGACGGATGAATGGATGCTTATTTATTTATCTAAATTGAATTCGAAT<br />
TCGGCTCATGGATTTCGCGAATGTGGATGGTGGATGCCCGCCTCGATGAATCCGCTTTGTCCGATAGAGA<br />
AATTTGAATTTAAATCCGGGACCTGGATTTTGCAATGTGGACGGGTGTGCTTTGCGAAATCTGCTTTGTT<br />
CGATAGCGCTGCACAAAACATGCGGTGGGCCCTGCATGAGAATCCGCTTCTTCTTTGTTGCCTTGGTAGG<br />
CGAAATCGTATATGGTCCCAACGATTTTCTTTGTTTGGTTTCAACATAAATGGGAGTTTTTATGAATTTA<br />
GGCTTATCTACATCAGAGCTACTCCTAACTTGTGATATGATGAACCAATCGTGTTCTTCTCATACTTGTT<br />
TAAGTTGGCCAATATAGGATTAATGCAGAGTATCCAAGGGTTTTAAGATGGATCTAGTTAAGATTTGGAG<br />
AACATAATCTACAATCATCAGCAACACTAATTATAACTAAATCAACTTGCCTTTTGAGTTCTCCGCAAAT<br />
ATCAGAACGCTTTTTTCTTTTTTTTTCTTTTTTTTTTTTGAGGAGGTGGGGAGCACAAAATCGGAGTGAA<br />
ATTCGGGATTCCCATTCAACCACTTCCAACCATGCCAAATCCCGGATGGTTTTTGTTTCTTGGCACTAAG<br />
TGATGGGTCACGTTTTCACAGTAGTTGATAACTTGCAACTTGCAATCACTCTATCTTCAGCTGCTCCACT<br />
GGATTCAACGTCCGTAGGAGCAGTAACTTGTCACAATGCTGAGCAGAAAATAACCGCTAGGAATATCAAA<br />
TTGCACAAAATTATAATGTCACTGTTGAGTGATGAGCAGTAACTCATGAAAGAATCCAAAGTTCCCATGA<br />
GTTCCAGAATGTTTGACTGATATGACAGACAAACTTTTGTAAGGTTCTCCTAAATAACACAAAGAAATTT<br />
CTCGTACACTACATGGCTGTATGGATTGAACATAATTTGCCTGTGACACTTGTCACACTTGTGACACTTC<br />
CAGGTTCCAATACAACCTTACAGCAATGGAGCAAGAGCACAGCAAGAAGAGAATATAGAGTGCATTTGTT<br />
TGGCAAGAAAGAAAAAAAATGATTCTACAATTACATCAAGGCTTATGCCTTTTCAGAATCAACAAGAATA<br />
GTATGCATAT<br />
基因(座)名称 半矮秆基因 dee-geo-woo-gen dwarf<br />
基因符号 sd1; GA20ox-2<br />
所在染色体 1 （已克隆）<br />
供体材料 Calrose;Deo-geo-woo-gen;Reimei;Calrose76;Jikkoku<br />
sd1 控制水稻的株高，该位点的突变导致水稻不同程度的矮化。截至目前至少已经发现sd-1 位点上5个不同等位基因，分别是来自野生型的等位基因、来自Deo-geo-woo-gen及其衍生种的sd1-d、来自Reimei的sd1-r、来自Calrose76的sd1-c、来自Jikkoku的sd1-j。<br />
sd-1 定位在水稻第1 染色体上，对应于日本晴测序图谱的位置(5'-3')在38381423 - 38384165 区间(Rice Genome Annotation Project)。<br />
sd1参与赤霉素的生物合成，编码由389个氨基酸组成的GA20氧化酶(GA20ox)。GA20ox是赤霉素合成途径中的关键酶，催化GA53转换为GA20。<br />
2002年，3个研究小组先后发表了图位克隆水稻“绿色革命”基因sd-1的论文。sd-1是由3个外显子和2个内含子组成的开放阅读框（open reading frame, ORF），编码由389个氨基酸组成的GA20氧化酶。尽管克隆的是同一基因，但可能由于方法与材料的差别，各外显子和内含子包含的碱基对数目略有不同。<br />
Monna等的研究报道表明：日本晴、Sasanishiki和Calrose等正常野生型水稻的3个外显子大小分别是558、318和291bp，2个内含子分别为105和1471bp；DGWG型半矮秆种IR24、Habataki和Milyang 23从外显子1中部起有383bp的缺失，包括外显子1和2的278bp序列及105bp的内含子；Calrose76为外显子2中编码第265位氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。<br />
Sasaki等报道认为先前发现的编码GA20氧化酶基因(GA20ox-1)与sd-1无关，而他们新发现的GA20ox-2与sd-1紧密连锁。比较了四个矮秆品种与野生型在sd-1位点上的序列差异，发现野生型水稻sd1等位基因的3个外显子大小分别为557、321和291bp，2个内含子分别为103和1472bp(右图)；矮秆品种Deo-geo-woo-gen及其衍生种在该位点缺失383bp，包含103bp的内含子1；矮秆品种Jikkoku中编码第94氨基酸的GGG变为GTG，导致甘氨酸变为缬氨酸；矮秆品种"Calrose 76"中编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）；矮秆品种Remei中编码第349氨基酸的GAC变为CAC，导致天冬氨酸变为组氨酸。GA20ox-2在叶片、茎秆、未开放的花中表达强烈，而GA20ox-1基因则是在未开放的花中表达，揭示了sd-1水稻株高降低，而产量不受影响的原因。<br />
Spielmeyer等的报道认为野生型水稻sd1等位基因的3个外显子大小分别为557、322和291bp；DGWG型籼稻半矮秆品种Doongar在GA20ox2编码区（外显子1和2）缺失了280bp；矮秆品种"Calrose 76"中亦是编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。·参考文献<br />
1. Wolfgang Spielmeyer;Marc H. Ellis;and Peter M. Chandler<br />
Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene<br />
Proceedings of the National Academy of Sciences, 2002, 99(13): 9043-9048<br />
2. Lisa Monna; Noriyuki Kitazawa; Rika Yoshino; Junko Suzuki; Haruka Masuda; Yumiko Maehara; Masao Tanji; Mizuho Sato; Shinobu Nasu and Yuzo Minobe<br />
Positional Cloning of Rice Semidwarfing Gene, sd-1: Rice "Green Revolution Gene" Encodes a Mutant Enzyme Involved in Gibberellin Synthesis<br />
DNA Research, 2002, 9(1): 11-17<br />
3. A. Sasaki; M. Ashikari;M. Ueguchi-Tanaka; H. Itoh;A. Nishimura; D. Swapan; K. Ishiyama;T. Saito; M. Kobayashi; G. S. KhushH. Kitano||; M. Matsuoka*<br />
A mutant gibberellin-synthesis gene in rice<br />
Nature, 2002, 416(): 701-702</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Brown_planthopper_resistance-1&diff=181930Brown planthopper resistance-12014-06-09T06:51:37Z<p>Liuxianju: Created page with "常规信息 基因(座)名称 褐飞虱抗性基因 Brown planthopper resistance-1 基因符号 Bph-1; 所在染色体 12 （未克隆） 供体材料 CO22, IR747B2-6, MTU15..."</p>
<hr />
<div>常规信息<br />
基因(座)名称 褐飞虱抗性基因 Brown planthopper resistance-1<br />
基因符号 Bph-1;<br />
所在染色体 12 （未克隆）<br />
供体材料 CO22, IR747B2-6, MTU15, Mudgo<br />
Bph1基因与水稻褐飞虱抗性相关，是由国际水稻研究所鉴定的第一个抗褐飞虱的主效基因。<br />
表型特征 褐飞虱抗性(TO:0000424), 地上部分(PO:0009006)<br />
生物进程 对虫的反应(GO:0009625)<br />
形态构造 维管叶(PO:0009025)<br />
生育时期 分蘖期(GRO:0007049), 秧苗期(GRO:0007047)<br />
·参考文献<br />
1. P.N. Sharma;Y. Ketipearachchi;K. Murata;A. Torii;S. Takumi;N.Mori & C. Nakamura<br />
RFLP/AFLP mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene Bph1 in rice<br />
Euphytica, 2002, 129(1): 109-117<br />
2. Yong-Hee Jeon;Sang-Nag Ahn;Hae-Chune Choi;Tae-Ryong Hahn & Huhn-Pal Moon<br />
Identification of a RAPD marker linked to a brown planthopper resistance gene in rice<br />
Euphytica, 1999, 107(1): 23-28<br />
3. Ning Huang;Arnold Parco;Teresita Mew;Gerard Magpantay;Susan McCouch;Emmanuel Guiderdoni;Jichen Xu;Prasanta Subudhi;Enrique R. Angeles and Gurdev S. Khush<br />
RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population<br />
Molecular Breeding, 1997, 3(2): 105-113<br />
4. Hideyuki Hirabayashi, Tsugufumi Ogawa<br />
RFLP mapping of Bph-1(Brown planthopper resistance gene) in rice<br />
Breeding Science, 1995, 45(0): 369-371<br />
5. Athwal-D-S, Pathak-M-D, Bacalangco-E-H and Pura-C-D<br />
Genetics of resistance to brown planthopper and green leafhopper in Oryza sativa L.<br />
Crop Science, 1971, 11(5): 747-750</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=AF465255.1&diff=181760AF465255.12014-06-09T04:46:07Z<p>Liuxianju: </p>
<hr />
<div>>gi|19422258|gb|AF465255.1| Oryza sativa cultivar Nipponbare gibberellin-20 oxidase (Sd-1) gene, complete cds<br />
Structured Information<br />
<br />
Gene Name <br />
Os01g0883800<br />
Description <br />
10322 bp DNA linear PLN 15-FEB-2008.<br />
Version <br />
AB013448.1 GI:4521189<br />
Length <br />
10322 bp<br />
Definition <br />
Oryza sativa Japonica Group gene for Pib, complete cds.<br />
S常规信息<br />
基因(座)名称 半矮秆基因 dee-geo-woo-gen dwarf<br />
基因符号 sd1; GA20ox-2<br />
所在染色体 1 （已克隆）<br />
供体材料 Calrose;Deo-geo-woo-gen;Reimei;Calrose76;Jikkoku<br />
sd1 控制水稻的株高，该位点的突变导致水稻不同程度的矮化。截至目前至少已经发现sd-1 位点上5个不同等位基因，分别是来自野生型的等位基因、来自Deo-geo-woo-gen及其衍生种的sd1-d、来自Reimei的sd1-r、来自Calrose76的sd1-c、来自Jikkoku的sd1-j。<br />
sd-1 定位在水稻第1 染色体上，对应于日本晴测序图谱的位置(5'-3')在38381423 - 38384165 区间(Rice Genome Annotation Project)。<br />
sd1参与赤霉素的生物合成，编码由389个氨基酸组成的GA20氧化酶(GA20ox)。GA20ox是赤霉素合成途径中的关键酶，催化GA53转换为GA20。<br />
2002年，3个研究小组先后发表了图位克隆水稻“绿色革命”基因sd-1的论文。sd-1是由3个外显子和2个内含子组成的开放阅读框（open reading frame, ORF），编码由389个氨基酸组成的GA20氧化酶。尽管克隆的是同一基因，但可能由于方法与材料的差别，各外显子和内含子包含的碱基对数目略有不同。<br />
Monna等的研究报道表明：日本晴、Sasanishiki和Calrose等正常野生型水稻的3个外显子大小分别是558、318和291bp，2个内含子分别为105和1471bp；DGWG型半矮秆种IR24、Habataki和Milyang 23从外显子1中部起有383bp的缺失，包括外显子1和2的278bp序列及105bp的内含子；Calrose76为外显子2中编码第265位氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。<br />
Sasaki等报道认为先前发现的编码GA20氧化酶基因(GA20ox-1)与sd-1无关，而他们新发现的GA20ox-2与sd-1紧密连锁。比较了四个矮秆品种与野生型在sd-1位点上的序列差异，发现野生型水稻sd1等位基因的3个外显子大小分别为557、321和291bp，2个内含子分别为103和1472bp(右图)；矮秆品种Deo-geo-woo-gen及其衍生种在该位点缺失383bp，包含103bp的内含子1；矮秆品种Jikkoku中编码第94氨基酸的GGG变为GTG，导致甘氨酸变为缬氨酸；矮秆品种"Calrose 76"中编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）；矮秆品种Remei中编码第349氨基酸的GAC变为CAC，导致天冬氨酸变为组氨酸。GA20ox-2在叶片、茎秆、未开放的花中表达强烈，而GA20ox-1基因则是在未开放的花中表达，揭示了sd-1水稻株高降低，而产量不受影响的原因。<br />
Spielmeyer等的报道认为野生型水稻sd1等位基因的3个外显子大小分别为557、322和291bp；DGWG型籼稻半矮秆品种Doongar在GA20ox2编码区（外显子1和2）缺失了280bp；矮秆品种"Calrose 76"中亦是编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。<br />
【相关登录号】<br />
NCBI GeneBank：AB077025, AF465255, AF465256, AY114310, U50333<br />
RAP-DB：Os01g0883800<br />
MSU：LOC_Os01g66100</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=AF465255.1&diff=181756AF465255.12014-06-09T04:39:54Z<p>Liuxianju: Created page with ">gi|19422258|gb|AF465255.1| Oryza sativa cultivar Nipponbare gibberellin-20 oxidase (Sd-1) gene, complete cds CTAGATCAGAGCACACAGAGAAAAAAATATAGACACCTTGGAAATTTGTCACAAAGAGACAAGGT..."</p>
<hr />
<div>>gi|19422258|gb|AF465255.1| Oryza sativa cultivar Nipponbare gibberellin-20 oxidase (Sd-1) gene, complete cds<br />
CTAGATCAGAGCACACAGAGAAAAAAATATAGACACCTTGGAAATTTGTCACAAAGAGACAAGGTGACTC<br />
AACAGGCCCTCCAAACTGAAAATTTAATTACTTGCTCAAGATTTAAATATAACTACCCATCCAGTTTTTA<br />
ATATATAAAGTTGTTAACTTTTAAACATATATATGTTTCACTGTTCTTATAATGTATTTTATCATTAAAC<br />
ATACTTTAAAACATATGGCTTATGTTTTTGAATATTTATATTAAAAATTTTAAATAAGATTAATGATCAA<br />
ACGTATATTTACTAGTTAACGACATCATGTATTAAAAATCGGAGGAGGTATAGAAGTATGTTCTCCTTTC<br />
TTGTAAACATAGGTTGATCTGTATATTTGTTTTTGTCTTATTTTGTTTTTTCATTGATCTCACCATTAAA<br />
CAGGTGGCCTCCAAAAATGCATGCAGCCATGTATCTTCCCAGTCCATGAAATTAATCTTGAATTATTATA<br />
AATTAAAAACATATTAGGATTTGATATATGAAAGGTATAATGGTAGCAGATCTATCATAGAAAACCTATA<br />
ACACGTAGATGACCGAGTAGAGAAAAAAGATATACCCAACATAATCAAGTACCTTGTTAATTAGTAAGAA<br />
GTAAGAAAACCATATAAATACAAGCATTTGGGTGAAGCTAGAATGGGAACTATATTACCATGTATCCCAT<br />
ACATATCTATTACGCACTTAATACCTGAATTATTCGTGTAACGAAGAACATGCTTTGGTAAAAAATAAAA<br />
TATTTGGACCGTATACCATGCGGTTATCGCAGTTATCACGTGCGGTAATATTCTCAGTTTTTCAAACCGC<br />
GGTATAACTTGCAATAACCGCGTGGTTTTCGCGGTAACCACCAAACCGTGGGGCTGTGGTAACCCCACCT<br />
AAAACGATTTGGTAAACCCTAGTCAGAGCTAGCTTGATCGTGGCTCCGCCCTCTGCATCTCCTCATGGTC<br />
ACAAGATCAATTTAGAACCTCTTATAAGCTGTTGAACCATCAGTACTACAGTCCCAAGATTAACATATTT<br />
TTTAAAATATCAAAATTGCTCATGATGAATTGATTACCGTTCATGTGCCTGTATGGTGCATGGGTGGTAT<br />
AGTGCACCGTGACCTGTACTGTGCTAGATGTTCCTTCCAACCTTAGTACTTCACGAAAAGGAGAGGAACC<br />
ATTTCCCTGTCACCTTCCTGCAACATGGTCAGGCATAAACCAAACACGATCGAAGCGAATCGGCGATACC<br />
ACACAATAGCCGCGCGTCGCAAACAACAATTCCGCGGCTAGCTACTTCCGACCTCCGAAACTACTGCGAG<br />
CCCAAGTGGGTACGGTTTTAGTGCAAATAGGGTAAGTCTTGTTTACATCATATCGGTTTCATTTTGGTAC<br />
ACGAATGGAGAAGAAATGAAAGAGATCGAAAAAAGGAAGAGCTCGCTGTGTATCTGTCTCGTAACAGCCC<br />
CGGTGTTACACGTGCTCTAAGAGAGATTAATTAAATCGATAAGCTACCAGAGGTTTAGTTTTCCACGTGT<br />
TAATTAGATTGGAAAGCGAGAGAAATTAAAAATAGCGAGTAAAAATAGAGATAACCTTATTGCTATTTTG<br />
TTTTTTTTCCAGCAACAAACTTATCTTTCAGGCTAGTTTAGGCGATCGCTTAGATTCCGCATCGTCCTTT<br />
TCACTATTTTTTTTCTGTCAGTGACAATGTGAAAATTTATTGGACAGACGACTAGCTTGTGGTACTAGCT<br />
AGGAAATTCCCTATCCTCGATATGAACAACTTACTCAACTCAGTAGAGTAGCAAATGCCCAAGAAAGCCC<br />
GAGTCAATCTATTTGGAAATCCAATCTATTTTCTCGTATTCGTGTGGGAAATCAAGCTATACTAGTTGAA<br />
ATTCACCGGAAGAAATGCACGCACTTCAATATACCAAAATTGCAAAGGAGAATCATTCGATTAACAGTGG<br />
AATTCAACCAAGAAATGAAAAGGTATATATAGGAAATGCACTCCAACCACCAACCAATAAGTGATTCCGG<br />
GCAATCAATTCTATCCGCGAGTTGTGGGTCTGTTCAGATTCATTATATTAGAACGCGTCACGTAATGGAT<br />
GGAGTATTATACAACACCATTGGTTTTGCCACTAGTGTTAACTCTAATACATGGGGGTTAGTTTTACCTT<br />
TAAACTTGGTCTAAAAGGATGGACATATGGCAATGCAATTGCATGGGGGTCATTGATTCGACCATCATGT<br />
CTGTCCAGTGGCAACCCCCTCCCTCATCCCCTGTGGTGGGCCCCCCACGGCGCTCGTCTTCTCCCCTGTT<br />
ACAAATACCCCACCCTCCTGCCCAGACAGCTCGCCCTGCACACACACACACACTCACACTCACACACGCT<br />
CTCAACTCACTCCCGCTCAACACAGCGCTCACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACG<br />
CCACCACAGCCGCACCAACCACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGG<br />
CGGCGGTGTGCGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCGAG<br />
GCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTGCTCCGCGACGGCGACGCCGAG<br />
GGGCTGCGCCGCGCCGCGGCGCAGGTGGCCGCCGCGTGCGCCACGCACGGGTTCTTCCAGGTGTCCGAGC<br />
ACGGCGTCGACGCCGCTCTGGCGCGCGCCGCGCTCGACGGCGCCAGCGACTTCTTCCGCCTCCCGCTCGC<br />
CGAGAAGCGCCGCGCGCGCCGCGTCCCGGGCACCGTGTCCGGCTACACCAGCGCCCACGCCGACCGCTTC<br />
GCCTCCAAGCTCCCATGGAAGGAGACCCTCTCCTTCGGCTTCCACGACCGCGCCGCCGCCCCCGTCGTCG<br />
CCGACTACTTCTCCAGCACCCTCGGCCCCGACTTCGCGCCAATGGGGTAATTAAAACGATGGTGGACGAC<br />
ATTGCATTTCAAATTCAAAACAAATTCAAAACACACCGACCGAGATTATGCTGAATTCAAACGCGTTTGT<br />
GCGCGCAGGAGGGTGTACCAGAAGTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCC<br />
TGGAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCTCAATCATGCG<br />
GTGCAACTACTACCCGCCATGCCCGGAGCCGGAGCGGACGCTCGGCACGGGCCCGCACTGCGACCCCACC<br />
GCCCTCACCATCCTCCTCCAGGACGACGTCGGCGGCCTCGAGGTCCTCGTCGACGGCGAATGGCGCCCCG<br />
TCAGCCCCGTCCCCGGCGCCATGGTCATCAACATCGGCGACACCTTCATGGTAAACCATCTCCTATTCTC<br />
CTCTCCTCTGTTCTCCTCTGCTTCGAAGCAACAGAACAAGTAATTCAAGCTTTTTTTTCTCTCTCGCGCG<br />
AAATTGACGAGAAAAATAAGATCGTGGTAGGGGCGGGGCTTTCAGCTGAAAGCGGGAAGAAACCGACCTG<br />
ACGTGATTTCTCTGTTCCAATCACAAACAATGGAATGCCCCACTCCTCCATGTGTTATGATTTATCTCAC<br />
ATCTTATAGTTAATAGGAGTAAGTAACAAGCTACTTTTTTCATATTATAGTTCGTTTGATTTTTTTTTTT<br />
TAAAGTTTTTTTAGTTTTATCCAAATTTATTGAAAAACTTAGCAACGTTTATAATACCAAATTAGTCTCA<br />
TTTAGTTTAATATTGTATATATTTTGATAATATATTTATGTTATATTAAAAATATTACTATATTTTTCTA<br />
TAAACATTATTAAAAGCCATTTATAATATAAAATGGAAGGAGTAATTAATATGGATCTCCCCCGACATGA<br />
GAATATTTTCCGATGGTGTGACGACGCCATGTAAGCTTCGGTGGGCCTGGACGGCCAGAGGTGCCAACAG<br />
CCACGTCCAACAACCCCTGGGTCCCCCCCTAACACTCCAAACAGTAGTGAGTAGTGTCTCGTCGCGTTTT<br />
AGTATTTGATGACAAACAAAGTGTGAGTTGAGTTAGCCACCACCAACTTGCACACGAGCACATACATTTG<br />
TGTCCATTCTCGCCAGTCACTTCCATCTCTAGTCCTAACTCCTATCTAGCGATGTAAGCGGATAATTTCA<br />
TCATCCGTATATAAACCTGTTTGTTATAGTTAATTTCCTATATAATACTATAACAGTATACATTTTAAAA<br />
GAAAACAAAATTAGGATAAACAGGCCCTGCTCCTATCCATCCATGGCACTTGGAAGGACCAGACTCGGTC<br />
ATGCCATGCCAAGCCAAGATATGGGTTATGGAAGAGTAGAGAAGAGGAGAGATGAGAGATAAGCATGCGT<br />
TCTCCTCCTCGTTGGATGTGTATTTTGGAGGGATTTGTGTAGTAGTAGCAGCGGCGCCGCGGGGACGGAT<br />
GCGGATGGTGGCGCTTTCGGTGGCGTTTTCCCGGGGGGGTTTTGGTTTGGCGCTTGGGGGGGATGGCATG<br />
GCGCGGCGTGCGGCTGCACGCCACACACACGCGCGCGCACGCACGTACGTCGTCGTCGCCGCGGGCGGAC<br />
GGTAGCTTAGGGTGGTGTGTTCCGCGCGCGGGCGCGGATTGTTCCATGCCGATCGATTTGGCGCCACCCT<br />
CGCCGCGGCTCTTGTCGCGTCGTGCGCCTCTCTCGCGCGGTTTGTCCTTGTCGCGTTGCTCAGCCGGCGA<br />
CGGGGGCACGGACATTGGCGATGTAGCCCTGCACGTGTCGGCCTCTCCGTTGATGAATGATGATGTATGT<br />
ATGTATTTTTTTTTGTCTGAAGGAATTTGTGGGGAATTGTTGTGTGTGCAGGCGCTGTCGAACGGGAGGT<br />
ATAAGAGCTGCCTGCACAGGGCGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTG<br />
CCCGCGGGAGGACAGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACC<br />
TGGGCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACGCCTTCACGC<br />
GCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGGCGGCCAGCTGATCGCCGAA<br />
CGGAACGAAACGGAACGAACAGAAGCCGATTTTTGGCGGGGCCCACGCCCACGTGAGGCCCCACGTGGAC<br />
AGTGGGCCCGGGCGGAGGTGGCACCCACGTGGACCGCGGGCCCCGCGCCGCCTTCCAATTTTGGACCCTA<br />
CCGCTGTACATATTCATATATTGCAAGAAGAAGCAAAACGTACGTGTGGGTTGGGTTGGGCTTCTCTCTA<br />
TTACTAAAAAAAATATAATGGAACGACGGATGAATGGATGCTTATTTATTTATCTAAATTGAATTCGAAT<br />
TCGGCTCATGGATTTCGCGAATGTGGATGGTGGATGCCCGCCTCGATGAATCCGCTTTGTCCGATAGAGA<br />
AATTTGAATTTAAATCCGGGACCTGGATTTTGCAATGTGGACGGGTGTGCTTTGCGAAATCTGCTTTGTT<br />
CGATAGCGCTGCACAAAACATGCGGTGGGCCCTGCATGAGAATCCGCTTCTTCTTTGTTGCCTTGGTAGG<br />
CGAAATCGTATATGGTCCCAACGATTTTCTTTGTTTGGTTTCAACATAAATGGGAGTTTTTATGAATTTA<br />
GGCTTATCTACATCAGAGCTACTCCTAACTTGTGATATGATGAACCAATCGTGTTCTTCTCATACTTGTT<br />
TAAGTTGGCCAATATAGGATTAATGCAGAGTATCCAAGGGTTTTAAGATGGATCTAGTTAAGATTTGGAG<br />
AACATAATCTACAATCATCAGCAACACTAATTATAACTAAATCAACTTGCCTTTTGAGTTCTCCGCAAAT<br />
ATCAGAACGCTTTTTTCTTTTTTTTTCTTTTTTTTTTTTGAGGAGGTGGGGAGCACAAAATCGGAGTGAA<br />
ATTCGGGATTCCCATTCAACCACTTCCAACCATGCCAAATCCCGGATGGTTTTTGTTTCTTGGCACTAAG<br />
TGATGGGTCACGTTTTCACAGTAGTTGATAACTTGCAACTTGCAATCACTCTATCTTCAGCTGCTCCACT<br />
GGATTCAACGTCCGTAGGAGCAGTAACTTGTCACAATGCTGAGCAGAAAATAACCGCTAGGAATATCAAA<br />
TTGCACAAAATTATAATGTCACTGTTGAGTGATGAGCAGTAACTCATGAAAGAATCCAAAGTTCCCATGA<br />
GTTCCAGAATGTTTGACTGATATGACAGACAAACTTTTGTAAGGTTCTCCTAAATAACACAAAGAAATTT<br />
CTCGTACACTACATGGCTGTATGGATTGAACATAATTTGCCTGTGACACTTGTCACACTTGTGACACTTC<br />
CAGGTTCCAATACAACCTTACAGCAATGGAGCAAGAGCACAGCAAGAAGAGAATATAGAGTGCATTTGTT<br />
TGGCAAGAAAGAAAAAAAATGATTCTACAATTACATCAAGGCTTATGCCTTTTCAGAATCAACAAGAATA<br />
GTATGCATAT<br />
基因(座)名称 半矮秆基因 dee-geo-woo-gen dwarf<br />
基因符号 sd1; GA20ox-2<br />
所在染色体 1 （已克隆）<br />
供体材料 Calrose;Deo-geo-woo-gen;Reimei;Calrose76;Jikkoku<br />
sd1 控制水稻的株高，该位点的突变导致水稻不同程度的矮化。截至目前至少已经发现sd-1 位点上5个不同等位基因，分别是来自野生型的等位基因、来自Deo-geo-woo-gen及其衍生种的sd1-d、来自Reimei的sd1-r、来自Calrose76的sd1-c、来自Jikkoku的sd1-j。<br />
sd-1 定位在水稻第1 染色体上，对应于日本晴测序图谱的位置(5'-3')在38381423 - 38384165 区间(Rice Genome Annotation Project)。<br />
sd1参与赤霉素的生物合成，编码由389个氨基酸组成的GA20氧化酶(GA20ox)。GA20ox是赤霉素合成途径中的关键酶，催化GA53转换为GA20。<br />
2002年，3个研究小组先后发表了图位克隆水稻“绿色革命”基因sd-1的论文。sd-1是由3个外显子和2个内含子组成的开放阅读框（open reading frame, ORF），编码由389个氨基酸组成的GA20氧化酶。尽管克隆的是同一基因，但可能由于方法与材料的差别，各外显子和内含子包含的碱基对数目略有不同。<br />
Monna等的研究报道表明：日本晴、Sasanishiki和Calrose等正常野生型水稻的3个外显子大小分别是558、318和291bp，2个内含子分别为105和1471bp；DGWG型半矮秆种IR24、Habataki和Milyang 23从外显子1中部起有383bp的缺失，包括外显子1和2的278bp序列及105bp的内含子；Calrose76为外显子2中编码第265位氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。<br />
Sasaki等报道认为先前发现的编码GA20氧化酶基因(GA20ox-1)与sd-1无关，而他们新发现的GA20ox-2与sd-1紧密连锁。比较了四个矮秆品种与野生型在sd-1位点上的序列差异，发现野生型水稻sd1等位基因的3个外显子大小分别为557、321和291bp，2个内含子分别为103和1472bp(右图)；矮秆品种Deo-geo-woo-gen及其衍生种在该位点缺失383bp，包含103bp的内含子1；矮秆品种Jikkoku中编码第94氨基酸的GGG变为GTG，导致甘氨酸变为缬氨酸；矮秆品种"Calrose 76"中编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）；矮秆品种Remei中编码第349氨基酸的GAC变为CAC，导致天冬氨酸变为组氨酸。GA20ox-2在叶片、茎秆、未开放的花中表达强烈，而GA20ox-1基因则是在未开放的花中表达，揭示了sd-1水稻株高降低，而产量不受影响的原因。<br />
Spielmeyer等的报道认为野生型水稻sd1等位基因的3个外显子大小分别为557、322和291bp；DGWG型籼稻半矮秆品种Doongar在GA20ox2编码区（外显子1和2）缺失了280bp；矮秆品种"Calrose 76"中亦是编码第266氨基酸的CTC突变为TTC，导致Leu（亮氨酸）突变为Phe（苯丙氨酸）。·参考文献<br />
1. Wolfgang Spielmeyer;Marc H. Ellis;and Peter M. Chandler<br />
Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene<br />
Proceedings of the National Academy of Sciences, 2002, 99(13): 9043-9048<br />
2. Lisa Monna; Noriyuki Kitazawa; Rika Yoshino; Junko Suzuki; Haruka Masuda; Yumiko Maehara; Masao Tanji; Mizuho Sato; Shinobu Nasu and Yuzo Minobe<br />
Positional Cloning of Rice Semidwarfing Gene, sd-1: Rice "Green Revolution Gene" Encodes a Mutant Enzyme Involved in Gibberellin Synthesis<br />
DNA Research, 2002, 9(1): 11-17<br />
3. A. Sasaki; M. Ashikari;M. Ueguchi-Tanaka; H. Itoh;A. Nishimura; D. Swapan; K. Ishiyama;T. Saito; M. Kobayashi; G. S. KhushH. Kitano||; M. Matsuoka*<br />
A mutant gibberellin-synthesis gene in rice<br />
Nature, 2002, 416(): 701-702</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0504000&diff=179952Os04g05040002014-06-07T08:02:00Z<p>Liuxianju: /* Expression */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
the rice gene, ''Os04g0504000'',or named ''OsAPT2'',contains seven exons and six introns.And it encodes a putative adenine phosphoribosyl transferase( APRT).The deduced amino acid sequence of ''Os04g0504000''is highly homologous to those of previously isolated APRTs.The observed heat-induced change in the ''Os04g0504000''expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility( TGMS)in 'Annong S-1'.the ''Os04g0504000''is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
Rice bacterial blight resistance gene Xa21 from West Africa, Oryza LONGISTAMINATA (Oryza LONGISTAMINATA), for the majority of domestic and foreign blight differential strains (such as the Philippines 1~9, Chinese Pathogenic Races 1~7 and Japan 1~3) showed high resistance, and complete dominance, adult plant resistance to disease.<br />
<br />
===Expression===<br />
<br />
the gene, ''Os04g0504000'' encodes a putative a putative adenine phosphoribosyl transgerase (APRT). In plants, adenine phosphoribosyl transferase (APRT) is the primary enzyme that converts adenine into adenosine-5'-monophosphate( AMP) in the salvage metabolism pathway. The balance of adenosine triphosphate( ATP) in the cell is maintained by two biosynthetic pathways: ''de novo'' adenine biosynthesis and purine salvage pathway, adenine may be converted to AMP via two possible pathways" a single step pathway involving APRT activity and a two-step pathway involving the sequential action of adenosine phosphorylase and adenosine kinase( ADK). the single step APRT pathway is the predominant pathway for the salvaging of adenine in plants under stress conditions.In contrast to the ''de novo'' purine biosynthetic pathway, purine salvage is more efficient due to its ability to convert adenine, a byproduct of many biochemical reactions, into AMP.The mutant of the gene ''Os04g0504000'' is male sterile due to abortion of pollen development after the meiotic division of the pollen mother cell.and it is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
Xa-21 is the first important functions has been cloned from wild rice gene. Khush reported their resistant donor for West Africa long medicine wild rice (Oryza LONGISTAMINATA), in rice late tillering stage anti when Philippines all 6 races. The hybrid IR24 gene by backcross, self access, BC4F2 group, F2 group of two to 1, 2 Philippines, 4 and 6 of the genetics of resistance, showed that the resistance was controlled by a dominant gene, is different from the 17 resistance genes have been identified, named Xa-21, later further breeding with near isogenic line IRBB21 Xa-21. Ronald Xa-21 on the eleventh chromosome, genetic map and RAPD818, RAPD248 and RG103 marker distance not exceeding 1.2cM. Then the gene cloning by Song Wenyuan etc., and widely used in domestic and foreign rice bacterial leaf blight of transgenic breeding<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
in Chromosomes 11<br />
<br />
==Labs working on this gene==<br />
The State Key Laboratory of Plant Genomics,Institute of Genetics and Developmental Biology,CAS.<br />
<br />
==References==<br />
# Chun-Jiang Zhou, Jun Li and Ji-Cheng Zou.2006.Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (''OsAPT2'') and its association with TGMS.Plant Molecular Biology (2006) 60:365–376<br />
# WENG Man-li,WANG Wang and ZHOU Chun-jiang.Cloning and genetic transformation of a novel rice gene OsAPT2.Journal of Hunan Agricultural University (Natural Sciences)(2007)33.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os04g0504000|<br />
Description = Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)|<br />
Version = NM_001059779.1 GI:115459287 GeneID:4336327|<br />
Length = 4794 bp|<br />
Definition = Oryza sativa Japonica Group Os04g0504000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120|<br />
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br />
AP = Chromosome 4:25564488..25569281|<br />
CDS = 25564611..25564779,25564904..25565014,25566857..25566949,25567372..25567521,25568371..25568429<br>,25568526..25568582|<br />
GCID = <gbrowseImage1><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttgaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatag</cdnaseq>|<br />
AA = <aaseq>MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAIS DAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDL VATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESRK</aaseq>|<br />
DNA = <dnaseqindica>124..292#417..527#2370..2462#2885..3034#3884..3942#4039..4095#gatagccggaggaagaagaagaagcaacagcagcagtcaagccaacccgtccggcgagcaagaagcaaccgaggcagcaaaaggaggaggagggaggactccactgttcgcttgtatcgtcttatgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccaggtccgccgcccgtactcactagctagctaagctcgatcgatcgatgtcgaaaccgttttaagaccacgccaaatcagttgaccacgtgaaaccaagtcacgcgcggctctacgttaatttgcagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtaaacactataaacagccgtacgtccaagcactctcccaaccaaaccggtcaaaccatgatcctttgcgcggcgcctttgccctcgcgtcgccatgtgccggcggcgcggcgcggcgccgagcctgacaccaacgccgacggcgacggccgagccgagctgtgggactgaggcggcggtgttgtgagattccgtaatatctttgggggagatctttcctgctccttttgtccccctacgctttgtcgtttgatcaggtcatcatcccagtcaccacctgcagcaattttttcccctctcacctcctcctactatttctcaatataaacaatttttgcgataattaaactccggcagcatcagcagcggccgtgcgggcgcaacagtggtggtggtagaccggtaggtgcatgcgctgctgaactgtgacaactgtcgatacacgcacgtatgtcgaacataggagtactatactagtgtatcataggagtatgtctttctcgccgtctggtccagaggggcaataaatgcaggggccaatgcctccacgggccacggctgtggatggagcagccgcaggaaaggcgccgcgccgaggcggagaggagaatgccgatgcctccctgcaccgcacgctacgtactacgtgcgccgcgggcgcgggcgcatgtgggggatgtgcgtgtgcatccgtccgtccgtccgtgcgcgcgtggcgcgtagtagcgcggtggtactgtatggtccacggctgcgcgctccgaggcgccgatccgcgtgcgtgcgtgcggccagaatgtacgtacgcctcgtcgcgtcgcgtcgagcgagcgctcgctggttggctggcgcggctgcggctggctggctccgccgctcgcggggctccgctggggccagcggaatcttgggcgattcaatgcgcggatcggagccatgtacacggccggtgattgggtgggacgagagaaacaacaaacaacgagagatcgatcgatcgatcaacgcacggagagtcggagaggtcgcgattccttcctatgacacgctcggtggtagcaggctgggcagcggggagtcagttcggtctcttccctcggctgcgttgtggtgtggggtgagcggggaccggcccccagccgctctgtgggccggggatcccctccctcatcggacggccatgattgcgcacatgcggtgtcggaggtctcgctctctcccgtgtagtgtcgtcatctttggaacaatcacatgatggtttccgtttggttttgattctatgcagtgcaaactgagctcgctttcgctcagtgcatgtactgcacgacctcacgtttttcgttctagatgcaaaccggccgcgagtacaatgatctgatttttttagattgggagttggagtacagagtctgattagcttttcccggccgtgtgtgtttgctcgaagcactttactttcacggcattatggcgtttgttgtgacataaacctccaataattgaatagccatcgcaacgtcatcgtatttatactggctagttgaaagtttttactcctacaaggctacaatgaacatcgaacactgtgttgcaaaagtacatatggaagttctatcagggacgtttgctagtgatggatactttaaaattgtagatttctagtagtaaatttggtgggaaaaactgtagttctacgaaaaatttgatgttaaacatataactttgggatcttacatcttaaatttatagttttgtcaaatatgtgtgttttgtgaattttactgttataaatctaatttccatgtgtatatatatatggtgaaattctccaacttatgctaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaactacggactatgtcatttcgctcatacaaggagcatacctacatcctaaaacataaggaattttacccatatagtttacatgagtaaaatcccttatattttaggatgaatgtattaatttgtttactcgcacacagtacatttgcttccactgaaaatgctgtagcaacattatatatgtactactgctactactcatagaacctgttagcacatgaaccactcatcatgtcagctactgaaatagttatagcttgagtacactcaataaatgttgtttgaggatcattgaaatggtctgatgaatagaactgtagattttattccgctttggtactggtatacagctatatactacaaactcaatatagagttgctagtagaatgtgctaacagtggcttttacaaatcttaaaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttggtgagtaactaaccgtttgtctcctcagcatgtatgcaaatgtaattcattgactgtggacaacactaaacaagtacgtacgtaagtgttaaaaaaatactattgttattttcagtttgctatgctctataatgctacttctaggtgacttatcatatgttttaacttctcaagtctgtcgaataataaaacacacattttaagctgaaaatttggttttcctgaacagataagcaatagaggaccttgagttatttaggatatttgctgactgttgtggaaaggatattctgatattttcttgtgataataacaaacattatattctgacttcaaaatgattcatattaaacgaaaatatcttaaatacatagtgccggacaaagaaagtgagagaaagtggaagaaaatggagtactgaatgtgtatatcatgtactactaatttagtaaaacatacaggacgtgaagctgaatatcatggatcatagtggagaagatcatgtaacattgtcaagcatcaaacagctcagtgataatatgtagagtagaggggcatcatgttctgttgaccttaagaaaagtatgctccccagtgagtcaacgggacaaactgtttattcatgggacaaaatcctgtccggaagatatgtcctattgggtggctaatcacctacatgcatgataagactggaggcataattttgatcttatcttacaaccgaaaagttcgtggataagaatcgagcattcaagaccctcccttttctctttttatgacactaaaacaactaactattctagtgtttacatctgtttatgcttattgctcaaactatttgcattccagaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataaggtacactcatattttggttaagaaaattgagaatcgcatctcacttttaataccttgatcaattatttgcttactggacttgcatgttttatacagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatagaaagtaacaaagcaatgatcaggcaagcatcacttttatgcttgaaattttctccaatatctccttttattttgataataatgtttgtaccatgttgtgcaatacagctaggctgcattattgtttgttcatggtcttttatcaatgcactgcttccatacacagtcgacatgagggtttaaaatgatgtgtactgttcttgacaagagtacacatgttgttaggtcctgacaattggtttataaaactttaaaatttctggatttttttatccgggtcagtgaaatattaatattgaaacgaggggcaaattgtgaatattgagcttctaattcatgtttccccctcctatcctttttcagaaagattcacagcttcattcctttgcaagagcacgttggaggaattggatcggtattggtgagcagtgactctgcacgcagcacaactgttaatgtaatctcggtggagagatgatgagatagatgaaatgtaatctttgtagcacgactagttttccaggtagtgtcgacgacgagagcttgtagttatttctgtcgggaactgttgattacccggaagagaaagggattaagggaattgccatcccgcttgttcagttcctcttttcttttctagtgacaattgtccttttcgccgcacttgatgatttatacttctttggtaaaactaccactc</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059779.1 RefSeq:Os04g0504000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 4]]<br />
[[Category:Chromosome 4]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0504000&diff=179950Os04g05040002014-06-07T08:00:38Z<p>Liuxianju: /* Function */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
the rice gene, ''Os04g0504000'',or named ''OsAPT2'',contains seven exons and six introns.And it encodes a putative adenine phosphoribosyl transferase( APRT).The deduced amino acid sequence of ''Os04g0504000''is highly homologous to those of previously isolated APRTs.The observed heat-induced change in the ''Os04g0504000''expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility( TGMS)in 'Annong S-1'.the ''Os04g0504000''is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
Rice bacterial blight resistance gene Xa21 from West Africa, Oryza LONGISTAMINATA (Oryza LONGISTAMINATA), for the majority of domestic and foreign blight differential strains (such as the Philippines 1~9, Chinese Pathogenic Races 1~7 and Japan 1~3) showed high resistance, and complete dominance, adult plant resistance to disease.<br />
<br />
===Expression===<br />
<br />
the gene, ''Os04g0504000'' encodes a putative a putative adenine phosphoribosyl transgerase (APRT). In plants, adenine phosphoribosyl transferase (APRT) is the primary enzyme that converts adenine into adenosine-5'-monophosphate( AMP) in the salvage metabolism pathway. The balance of adenosine triphosphate( ATP) in the cell is maintained by two biosynthetic pathways: ''de novo'' adenine biosynthesis and purine salvage pathway, adenine may be converted to AMP via two possible pathways" a single step pathway involving APRT activity and a two-step pathway involving the sequential action of adenosine phosphorylase and adenosine kinase( ADK). the single step APRT pathway is the predominant pathway for the salvaging of adenine in plants under stress conditions.In contrast to the ''de novo'' purine biosynthetic pathway, purine salvage is more efficient due to its ability to convert adenine, a byproduct of many biochemical reactions, into AMP.The mutant of the gene ''Os04g0504000'' is male sterile due to abortion of pollen development after the meiotic division of the pollen mother cell.and it is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
in Chromosomes 11<br />
<br />
==Labs working on this gene==<br />
The State Key Laboratory of Plant Genomics,Institute of Genetics and Developmental Biology,CAS.<br />
<br />
==References==<br />
# Chun-Jiang Zhou, Jun Li and Ji-Cheng Zou.2006.Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (''OsAPT2'') and its association with TGMS.Plant Molecular Biology (2006) 60:365–376<br />
# WENG Man-li,WANG Wang and ZHOU Chun-jiang.Cloning and genetic transformation of a novel rice gene OsAPT2.Journal of Hunan Agricultural University (Natural Sciences)(2007)33.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os04g0504000|<br />
Description = Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)|<br />
Version = NM_001059779.1 GI:115459287 GeneID:4336327|<br />
Length = 4794 bp|<br />
Definition = Oryza sativa Japonica Group Os04g0504000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120|<br />
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br />
AP = Chromosome 4:25564488..25569281|<br />
CDS = 25564611..25564779,25564904..25565014,25566857..25566949,25567372..25567521,25568371..25568429<br>,25568526..25568582|<br />
GCID = <gbrowseImage1><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttgaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatag</cdnaseq>|<br />
AA = <aaseq>MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAIS DAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDL VATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESRK</aaseq>|<br />
DNA = <dnaseqindica>124..292#417..527#2370..2462#2885..3034#3884..3942#4039..4095#gatagccggaggaagaagaagaagcaacagcagcagtcaagccaacccgtccggcgagcaagaagcaaccgaggcagcaaaaggaggaggagggaggactccactgttcgcttgtatcgtcttatgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccaggtccgccgcccgtactcactagctagctaagctcgatcgatcgatgtcgaaaccgttttaagaccacgccaaatcagttgaccacgtgaaaccaagtcacgcgcggctctacgttaatttgcagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtaaacactataaacagccgtacgtccaagcactctcccaaccaaaccggtcaaaccatgatcctttgcgcggcgcctttgccctcgcgtcgccatgtgccggcggcgcggcgcggcgccgagcctgacaccaacgccgacggcgacggccgagccgagctgtgggactgaggcggcggtgttgtgagattccgtaatatctttgggggagatctttcctgctccttttgtccccctacgctttgtcgtttgatcaggtcatcatcccagtcaccacctgcagcaattttttcccctctcacctcctcctactatttctcaatataaacaatttttgcgataattaaactccggcagcatcagcagcggccgtgcgggcgcaacagtggtggtggtagaccggtaggtgcatgcgctgctgaactgtgacaactgtcgatacacgcacgtatgtcgaacataggagtactatactagtgtatcataggagtatgtctttctcgccgtctggtccagaggggcaataaatgcaggggccaatgcctccacgggccacggctgtggatggagcagccgcaggaaaggcgccgcgccgaggcggagaggagaatgccgatgcctccctgcaccgcacgctacgtactacgtgcgccgcgggcgcgggcgcatgtgggggatgtgcgtgtgcatccgtccgtccgtccgtgcgcgcgtggcgcgtagtagcgcggtggtactgtatggtccacggctgcgcgctccgaggcgccgatccgcgtgcgtgcgtgcggccagaatgtacgtacgcctcgtcgcgtcgcgtcgagcgagcgctcgctggttggctggcgcggctgcggctggctggctccgccgctcgcggggctccgctggggccagcggaatcttgggcgattcaatgcgcggatcggagccatgtacacggccggtgattgggtgggacgagagaaacaacaaacaacgagagatcgatcgatcgatcaacgcacggagagtcggagaggtcgcgattccttcctatgacacgctcggtggtagcaggctgggcagcggggagtcagttcggtctcttccctcggctgcgttgtggtgtggggtgagcggggaccggcccccagccgctctgtgggccggggatcccctccctcatcggacggccatgattgcgcacatgcggtgtcggaggtctcgctctctcccgtgtagtgtcgtcatctttggaacaatcacatgatggtttccgtttggttttgattctatgcagtgcaaactgagctcgctttcgctcagtgcatgtactgcacgacctcacgtttttcgttctagatgcaaaccggccgcgagtacaatgatctgatttttttagattgggagttggagtacagagtctgattagcttttcccggccgtgtgtgtttgctcgaagcactttactttcacggcattatggcgtttgttgtgacataaacctccaataattgaatagccatcgcaacgtcatcgtatttatactggctagttgaaagtttttactcctacaaggctacaatgaacatcgaacactgtgttgcaaaagtacatatggaagttctatcagggacgtttgctagtgatggatactttaaaattgtagatttctagtagtaaatttggtgggaaaaactgtagttctacgaaaaatttgatgttaaacatataactttgggatcttacatcttaaatttatagttttgtcaaatatgtgtgttttgtgaattttactgttataaatctaatttccatgtgtatatatatatggtgaaattctccaacttatgctaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaactacggactatgtcatttcgctcatacaaggagcatacctacatcctaaaacataaggaattttacccatatagtttacatgagtaaaatcccttatattttaggatgaatgtattaatttgtttactcgcacacagtacatttgcttccactgaaaatgctgtagcaacattatatatgtactactgctactactcatagaacctgttagcacatgaaccactcatcatgtcagctactgaaatagttatagcttgagtacactcaataaatgttgtttgaggatcattgaaatggtctgatgaatagaactgtagattttattccgctttggtactggtatacagctatatactacaaactcaatatagagttgctagtagaatgtgctaacagtggcttttacaaatcttaaaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttggtgagtaactaaccgtttgtctcctcagcatgtatgcaaatgtaattcattgactgtggacaacactaaacaagtacgtacgtaagtgttaaaaaaatactattgttattttcagtttgctatgctctataatgctacttctaggtgacttatcatatgttttaacttctcaagtctgtcgaataataaaacacacattttaagctgaaaatttggttttcctgaacagataagcaatagaggaccttgagttatttaggatatttgctgactgttgtggaaaggatattctgatattttcttgtgataataacaaacattatattctgacttcaaaatgattcatattaaacgaaaatatcttaaatacatagtgccggacaaagaaagtgagagaaagtggaagaaaatggagtactgaatgtgtatatcatgtactactaatttagtaaaacatacaggacgtgaagctgaatatcatggatcatagtggagaagatcatgtaacattgtcaagcatcaaacagctcagtgataatatgtagagtagaggggcatcatgttctgttgaccttaagaaaagtatgctccccagtgagtcaacgggacaaactgtttattcatgggacaaaatcctgtccggaagatatgtcctattgggtggctaatcacctacatgcatgataagactggaggcataattttgatcttatcttacaaccgaaaagttcgtggataagaatcgagcattcaagaccctcccttttctctttttatgacactaaaacaactaactattctagtgtttacatctgtttatgcttattgctcaaactatttgcattccagaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataaggtacactcatattttggttaagaaaattgagaatcgcatctcacttttaataccttgatcaattatttgcttactggacttgcatgttttatacagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatagaaagtaacaaagcaatgatcaggcaagcatcacttttatgcttgaaattttctccaatatctccttttattttgataataatgtttgtaccatgttgtgcaatacagctaggctgcattattgtttgttcatggtcttttatcaatgcactgcttccatacacagtcgacatgagggtttaaaatgatgtgtactgttcttgacaagagtacacatgttgttaggtcctgacaattggtttataaaactttaaaatttctggatttttttatccgggtcagtgaaatattaatattgaaacgaggggcaaattgtgaatattgagcttctaattcatgtttccccctcctatcctttttcagaaagattcacagcttcattcctttgcaagagcacgttggaggaattggatcggtattggtgagcagtgactctgcacgcagcacaactgttaatgtaatctcggtggagagatgatgagatagatgaaatgtaatctttgtagcacgactagttttccaggtagtgtcgacgacgagagcttgtagttatttctgtcgggaactgttgattacccggaagagaaagggattaagggaattgccatcccgcttgttcagttcctcttttcttttctagtgacaattgtccttttcgccgcacttgatgatttatacttctttggtaaaactaccactc</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059779.1 RefSeq:Os04g0504000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 4]]<br />
[[Category:Chromosome 4]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0504000&diff=179947Os04g05040002014-06-07T07:55:53Z<p>Liuxianju: /* Evolution */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
the rice gene, ''Os04g0504000'',or named ''OsAPT2'',contains seven exons and six introns.And it encodes a putative adenine phosphoribosyl transferase( APRT).The deduced amino acid sequence of ''Os04g0504000''is highly homologous to those of previously isolated APRTs.The observed heat-induced change in the ''Os04g0504000''expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility( TGMS)in 'Annong S-1'.the ''Os04g0504000''is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Expression===<br />
<br />
the gene, ''Os04g0504000'' encodes a putative a putative adenine phosphoribosyl transgerase (APRT). In plants, adenine phosphoribosyl transferase (APRT) is the primary enzyme that converts adenine into adenosine-5'-monophosphate( AMP) in the salvage metabolism pathway. The balance of adenosine triphosphate( ATP) in the cell is maintained by two biosynthetic pathways: ''de novo'' adenine biosynthesis and purine salvage pathway, adenine may be converted to AMP via two possible pathways" a single step pathway involving APRT activity and a two-step pathway involving the sequential action of adenosine phosphorylase and adenosine kinase( ADK). the single step APRT pathway is the predominant pathway for the salvaging of adenine in plants under stress conditions.In contrast to the ''de novo'' purine biosynthetic pathway, purine salvage is more efficient due to its ability to convert adenine, a byproduct of many biochemical reactions, into AMP.The mutant of the gene ''Os04g0504000'' is male sterile due to abortion of pollen development after the meiotic division of the pollen mother cell.and it is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
in Chromosomes 11<br />
<br />
==Labs working on this gene==<br />
The State Key Laboratory of Plant Genomics,Institute of Genetics and Developmental Biology,CAS.<br />
<br />
==References==<br />
# Chun-Jiang Zhou, Jun Li and Ji-Cheng Zou.2006.Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (''OsAPT2'') and its association with TGMS.Plant Molecular Biology (2006) 60:365–376<br />
# WENG Man-li,WANG Wang and ZHOU Chun-jiang.Cloning and genetic transformation of a novel rice gene OsAPT2.Journal of Hunan Agricultural University (Natural Sciences)(2007)33.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os04g0504000|<br />
Description = Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)|<br />
Version = NM_001059779.1 GI:115459287 GeneID:4336327|<br />
Length = 4794 bp|<br />
Definition = Oryza sativa Japonica Group Os04g0504000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120|<br />
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br />
AP = Chromosome 4:25564488..25569281|<br />
CDS = 25564611..25564779,25564904..25565014,25566857..25566949,25567372..25567521,25568371..25568429<br>,25568526..25568582|<br />
GCID = <gbrowseImage1><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttgaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatag</cdnaseq>|<br />
AA = <aaseq>MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAIS DAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDL VATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESRK</aaseq>|<br />
DNA = <dnaseqindica>124..292#417..527#2370..2462#2885..3034#3884..3942#4039..4095#gatagccggaggaagaagaagaagcaacagcagcagtcaagccaacccgtccggcgagcaagaagcaaccgaggcagcaaaaggaggaggagggaggactccactgttcgcttgtatcgtcttatgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccaggtccgccgcccgtactcactagctagctaagctcgatcgatcgatgtcgaaaccgttttaagaccacgccaaatcagttgaccacgtgaaaccaagtcacgcgcggctctacgttaatttgcagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtaaacactataaacagccgtacgtccaagcactctcccaaccaaaccggtcaaaccatgatcctttgcgcggcgcctttgccctcgcgtcgccatgtgccggcggcgcggcgcggcgccgagcctgacaccaacgccgacggcgacggccgagccgagctgtgggactgaggcggcggtgttgtgagattccgtaatatctttgggggagatctttcctgctccttttgtccccctacgctttgtcgtttgatcaggtcatcatcccagtcaccacctgcagcaattttttcccctctcacctcctcctactatttctcaatataaacaatttttgcgataattaaactccggcagcatcagcagcggccgtgcgggcgcaacagtggtggtggtagaccggtaggtgcatgcgctgctgaactgtgacaactgtcgatacacgcacgtatgtcgaacataggagtactatactagtgtatcataggagtatgtctttctcgccgtctggtccagaggggcaataaatgcaggggccaatgcctccacgggccacggctgtggatggagcagccgcaggaaaggcgccgcgccgaggcggagaggagaatgccgatgcctccctgcaccgcacgctacgtactacgtgcgccgcgggcgcgggcgcatgtgggggatgtgcgtgtgcatccgtccgtccgtccgtgcgcgcgtggcgcgtagtagcgcggtggtactgtatggtccacggctgcgcgctccgaggcgccgatccgcgtgcgtgcgtgcggccagaatgtacgtacgcctcgtcgcgtcgcgtcgagcgagcgctcgctggttggctggcgcggctgcggctggctggctccgccgctcgcggggctccgctggggccagcggaatcttgggcgattcaatgcgcggatcggagccatgtacacggccggtgattgggtgggacgagagaaacaacaaacaacgagagatcgatcgatcgatcaacgcacggagagtcggagaggtcgcgattccttcctatgacacgctcggtggtagcaggctgggcagcggggagtcagttcggtctcttccctcggctgcgttgtggtgtggggtgagcggggaccggcccccagccgctctgtgggccggggatcccctccctcatcggacggccatgattgcgcacatgcggtgtcggaggtctcgctctctcccgtgtagtgtcgtcatctttggaacaatcacatgatggtttccgtttggttttgattctatgcagtgcaaactgagctcgctttcgctcagtgcatgtactgcacgacctcacgtttttcgttctagatgcaaaccggccgcgagtacaatgatctgatttttttagattgggagttggagtacagagtctgattagcttttcccggccgtgtgtgtttgctcgaagcactttactttcacggcattatggcgtttgttgtgacataaacctccaataattgaatagccatcgcaacgtcatcgtatttatactggctagttgaaagtttttactcctacaaggctacaatgaacatcgaacactgtgttgcaaaagtacatatggaagttctatcagggacgtttgctagtgatggatactttaaaattgtagatttctagtagtaaatttggtgggaaaaactgtagttctacgaaaaatttgatgttaaacatataactttgggatcttacatcttaaatttatagttttgtcaaatatgtgtgttttgtgaattttactgttataaatctaatttccatgtgtatatatatatggtgaaattctccaacttatgctaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaactacggactatgtcatttcgctcatacaaggagcatacctacatcctaaaacataaggaattttacccatatagtttacatgagtaaaatcccttatattttaggatgaatgtattaatttgtttactcgcacacagtacatttgcttccactgaaaatgctgtagcaacattatatatgtactactgctactactcatagaacctgttagcacatgaaccactcatcatgtcagctactgaaatagttatagcttgagtacactcaataaatgttgtttgaggatcattgaaatggtctgatgaatagaactgtagattttattccgctttggtactggtatacagctatatactacaaactcaatatagagttgctagtagaatgtgctaacagtggcttttacaaatcttaaaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttggtgagtaactaaccgtttgtctcctcagcatgtatgcaaatgtaattcattgactgtggacaacactaaacaagtacgtacgtaagtgttaaaaaaatactattgttattttcagtttgctatgctctataatgctacttctaggtgacttatcatatgttttaacttctcaagtctgtcgaataataaaacacacattttaagctgaaaatttggttttcctgaacagataagcaatagaggaccttgagttatttaggatatttgctgactgttgtggaaaggatattctgatattttcttgtgataataacaaacattatattctgacttcaaaatgattcatattaaacgaaaatatcttaaatacatagtgccggacaaagaaagtgagagaaagtggaagaaaatggagtactgaatgtgtatatcatgtactactaatttagtaaaacatacaggacgtgaagctgaatatcatggatcatagtggagaagatcatgtaacattgtcaagcatcaaacagctcagtgataatatgtagagtagaggggcatcatgttctgttgaccttaagaaaagtatgctccccagtgagtcaacgggacaaactgtttattcatgggacaaaatcctgtccggaagatatgtcctattgggtggctaatcacctacatgcatgataagactggaggcataattttgatcttatcttacaaccgaaaagttcgtggataagaatcgagcattcaagaccctcccttttctctttttatgacactaaaacaactaactattctagtgtttacatctgtttatgcttattgctcaaactatttgcattccagaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataaggtacactcatattttggttaagaaaattgagaatcgcatctcacttttaataccttgatcaattatttgcttactggacttgcatgttttatacagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatagaaagtaacaaagcaatgatcaggcaagcatcacttttatgcttgaaattttctccaatatctccttttattttgataataatgtttgtaccatgttgtgcaatacagctaggctgcattattgtttgttcatggtcttttatcaatgcactgcttccatacacagtcgacatgagggtttaaaatgatgtgtactgttcttgacaagagtacacatgttgttaggtcctgacaattggtttataaaactttaaaatttctggatttttttatccgggtcagtgaaatattaatattgaaacgaggggcaaattgtgaatattgagcttctaattcatgtttccccctcctatcctttttcagaaagattcacagcttcattcctttgcaagagcacgttggaggaattggatcggtattggtgagcagtgactctgcacgcagcacaactgttaatgtaatctcggtggagagatgatgagatagatgaaatgtaatctttgtagcacgactagttttccaggtagtgtcgacgacgagagcttgtagttatttctgtcgggaactgttgattacccggaagagaaagggattaagggaattgccatcccgcttgttcagttcctcttttcttttctagtgacaattgtccttttcgccgcacttgatgatttatacttctttggtaaaactaccactc</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059779.1 RefSeq:Os04g0504000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 4]]<br />
[[Category:Chromosome 4]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0504000&diff=179942Os04g05040002014-06-07T07:52:51Z<p>Liuxianju: /* References */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
the rice gene, ''Os04g0504000'',or named ''OsAPT2'',contains seven exons and six introns.And it encodes a putative adenine phosphoribosyl transferase( APRT).The deduced amino acid sequence of ''Os04g0504000''is highly homologous to those of previously isolated APRTs.The observed heat-induced change in the ''Os04g0504000''expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility( TGMS)in 'Annong S-1'.the ''Os04g0504000''is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Expression===<br />
<br />
the gene, ''Os04g0504000'' encodes a putative a putative adenine phosphoribosyl transgerase (APRT). In plants, adenine phosphoribosyl transferase (APRT) is the primary enzyme that converts adenine into adenosine-5'-monophosphate( AMP) in the salvage metabolism pathway. The balance of adenosine triphosphate( ATP) in the cell is maintained by two biosynthetic pathways: ''de novo'' adenine biosynthesis and purine salvage pathway, adenine may be converted to AMP via two possible pathways" a single step pathway involving APRT activity and a two-step pathway involving the sequential action of adenosine phosphorylase and adenosine kinase( ADK). the single step APRT pathway is the predominant pathway for the salvaging of adenine in plants under stress conditions.In contrast to the ''de novo'' purine biosynthetic pathway, purine salvage is more efficient due to its ability to convert adenine, a byproduct of many biochemical reactions, into AMP.The mutant of the gene ''Os04g0504000'' is male sterile due to abortion of pollen development after the meiotic division of the pollen mother cell.and it is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
The State Key Laboratory of Plant Genomics,Institute of Genetics and Developmental Biology,CAS.<br />
<br />
==References==<br />
# Chun-Jiang Zhou, Jun Li and Ji-Cheng Zou.2006.Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (''OsAPT2'') and its association with TGMS.Plant Molecular Biology (2006) 60:365–376<br />
# WENG Man-li,WANG Wang and ZHOU Chun-jiang.Cloning and genetic transformation of a novel rice gene OsAPT2.Journal of Hunan Agricultural University (Natural Sciences)(2007)33.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os04g0504000|<br />
Description = Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)|<br />
Version = NM_001059779.1 GI:115459287 GeneID:4336327|<br />
Length = 4794 bp|<br />
Definition = Oryza sativa Japonica Group Os04g0504000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120|<br />
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br />
AP = Chromosome 4:25564488..25569281|<br />
CDS = 25564611..25564779,25564904..25565014,25566857..25566949,25567372..25567521,25568371..25568429<br>,25568526..25568582|<br />
GCID = <gbrowseImage1><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttgaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatag</cdnaseq>|<br />
AA = <aaseq>MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAIS DAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDL VATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESRK</aaseq>|<br />
DNA = <dnaseqindica>124..292#417..527#2370..2462#2885..3034#3884..3942#4039..4095#gatagccggaggaagaagaagaagcaacagcagcagtcaagccaacccgtccggcgagcaagaagcaaccgaggcagcaaaaggaggaggagggaggactccactgttcgcttgtatcgtcttatgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccaggtccgccgcccgtactcactagctagctaagctcgatcgatcgatgtcgaaaccgttttaagaccacgccaaatcagttgaccacgtgaaaccaagtcacgcgcggctctacgttaatttgcagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtaaacactataaacagccgtacgtccaagcactctcccaaccaaaccggtcaaaccatgatcctttgcgcggcgcctttgccctcgcgtcgccatgtgccggcggcgcggcgcggcgccgagcctgacaccaacgccgacggcgacggccgagccgagctgtgggactgaggcggcggtgttgtgagattccgtaatatctttgggggagatctttcctgctccttttgtccccctacgctttgtcgtttgatcaggtcatcatcccagtcaccacctgcagcaattttttcccctctcacctcctcctactatttctcaatataaacaatttttgcgataattaaactccggcagcatcagcagcggccgtgcgggcgcaacagtggtggtggtagaccggtaggtgcatgcgctgctgaactgtgacaactgtcgatacacgcacgtatgtcgaacataggagtactatactagtgtatcataggagtatgtctttctcgccgtctggtccagaggggcaataaatgcaggggccaatgcctccacgggccacggctgtggatggagcagccgcaggaaaggcgccgcgccgaggcggagaggagaatgccgatgcctccctgcaccgcacgctacgtactacgtgcgccgcgggcgcgggcgcatgtgggggatgtgcgtgtgcatccgtccgtccgtccgtgcgcgcgtggcgcgtagtagcgcggtggtactgtatggtccacggctgcgcgctccgaggcgccgatccgcgtgcgtgcgtgcggccagaatgtacgtacgcctcgtcgcgtcgcgtcgagcgagcgctcgctggttggctggcgcggctgcggctggctggctccgccgctcgcggggctccgctggggccagcggaatcttgggcgattcaatgcgcggatcggagccatgtacacggccggtgattgggtgggacgagagaaacaacaaacaacgagagatcgatcgatcgatcaacgcacggagagtcggagaggtcgcgattccttcctatgacacgctcggtggtagcaggctgggcagcggggagtcagttcggtctcttccctcggctgcgttgtggtgtggggtgagcggggaccggcccccagccgctctgtgggccggggatcccctccctcatcggacggccatgattgcgcacatgcggtgtcggaggtctcgctctctcccgtgtagtgtcgtcatctttggaacaatcacatgatggtttccgtttggttttgattctatgcagtgcaaactgagctcgctttcgctcagtgcatgtactgcacgacctcacgtttttcgttctagatgcaaaccggccgcgagtacaatgatctgatttttttagattgggagttggagtacagagtctgattagcttttcccggccgtgtgtgtttgctcgaagcactttactttcacggcattatggcgtttgttgtgacataaacctccaataattgaatagccatcgcaacgtcatcgtatttatactggctagttgaaagtttttactcctacaaggctacaatgaacatcgaacactgtgttgcaaaagtacatatggaagttctatcagggacgtttgctagtgatggatactttaaaattgtagatttctagtagtaaatttggtgggaaaaactgtagttctacgaaaaatttgatgttaaacatataactttgggatcttacatcttaaatttatagttttgtcaaatatgtgtgttttgtgaattttactgttataaatctaatttccatgtgtatatatatatggtgaaattctccaacttatgctaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaactacggactatgtcatttcgctcatacaaggagcatacctacatcctaaaacataaggaattttacccatatagtttacatgagtaaaatcccttatattttaggatgaatgtattaatttgtttactcgcacacagtacatttgcttccactgaaaatgctgtagcaacattatatatgtactactgctactactcatagaacctgttagcacatgaaccactcatcatgtcagctactgaaatagttatagcttgagtacactcaataaatgttgtttgaggatcattgaaatggtctgatgaatagaactgtagattttattccgctttggtactggtatacagctatatactacaaactcaatatagagttgctagtagaatgtgctaacagtggcttttacaaatcttaaaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttggtgagtaactaaccgtttgtctcctcagcatgtatgcaaatgtaattcattgactgtggacaacactaaacaagtacgtacgtaagtgttaaaaaaatactattgttattttcagtttgctatgctctataatgctacttctaggtgacttatcatatgttttaacttctcaagtctgtcgaataataaaacacacattttaagctgaaaatttggttttcctgaacagataagcaatagaggaccttgagttatttaggatatttgctgactgttgtggaaaggatattctgatattttcttgtgataataacaaacattatattctgacttcaaaatgattcatattaaacgaaaatatcttaaatacatagtgccggacaaagaaagtgagagaaagtggaagaaaatggagtactgaatgtgtatatcatgtactactaatttagtaaaacatacaggacgtgaagctgaatatcatggatcatagtggagaagatcatgtaacattgtcaagcatcaaacagctcagtgataatatgtagagtagaggggcatcatgttctgttgaccttaagaaaagtatgctccccagtgagtcaacgggacaaactgtttattcatgggacaaaatcctgtccggaagatatgtcctattgggtggctaatcacctacatgcatgataagactggaggcataattttgatcttatcttacaaccgaaaagttcgtggataagaatcgagcattcaagaccctcccttttctctttttatgacactaaaacaactaactattctagtgtttacatctgtttatgcttattgctcaaactatttgcattccagaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataaggtacactcatattttggttaagaaaattgagaatcgcatctcacttttaataccttgatcaattatttgcttactggacttgcatgttttatacagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatagaaagtaacaaagcaatgatcaggcaagcatcacttttatgcttgaaattttctccaatatctccttttattttgataataatgtttgtaccatgttgtgcaatacagctaggctgcattattgtttgttcatggtcttttatcaatgcactgcttccatacacagtcgacatgagggtttaaaatgatgtgtactgttcttgacaagagtacacatgttgttaggtcctgacaattggtttataaaactttaaaatttctggatttttttatccgggtcagtgaaatattaatattgaaacgaggggcaaattgtgaatattgagcttctaattcatgtttccccctcctatcctttttcagaaagattcacagcttcattcctttgcaagagcacgttggaggaattggatcggtattggtgagcagtgactctgcacgcagcacaactgttaatgtaatctcggtggagagatgatgagatagatgaaatgtaatctttgtagcacgactagttttccaggtagtgtcgacgacgagagcttgtagttatttctgtcgggaactgttgattacccggaagagaaagggattaagggaattgccatcccgcttgttcagttcctcttttcttttctagtgacaattgtccttttcgccgcacttgatgatttatacttctttggtaaaactaccactc</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059779.1 RefSeq:Os04g0504000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 4]]<br />
[[Category:Chromosome 4]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0504000&diff=179940Os04g05040002014-06-07T07:52:22Z<p>Liuxianju: /* Structured Information */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
the rice gene, ''Os04g0504000'',or named ''OsAPT2'',contains seven exons and six introns.And it encodes a putative adenine phosphoribosyl transferase( APRT).The deduced amino acid sequence of ''Os04g0504000''is highly homologous to those of previously isolated APRTs.The observed heat-induced change in the ''Os04g0504000''expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility( TGMS)in 'Annong S-1'.the ''Os04g0504000''is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Expression===<br />
<br />
the gene, ''Os04g0504000'' encodes a putative a putative adenine phosphoribosyl transgerase (APRT). In plants, adenine phosphoribosyl transferase (APRT) is the primary enzyme that converts adenine into adenosine-5'-monophosphate( AMP) in the salvage metabolism pathway. The balance of adenosine triphosphate( ATP) in the cell is maintained by two biosynthetic pathways: ''de novo'' adenine biosynthesis and purine salvage pathway, adenine may be converted to AMP via two possible pathways" a single step pathway involving APRT activity and a two-step pathway involving the sequential action of adenosine phosphorylase and adenosine kinase( ADK). the single step APRT pathway is the predominant pathway for the salvaging of adenine in plants under stress conditions.In contrast to the ''de novo'' purine biosynthetic pathway, purine salvage is more efficient due to its ability to convert adenine, a byproduct of many biochemical reactions, into AMP.The mutant of the gene ''Os04g0504000'' is male sterile due to abortion of pollen development after the meiotic division of the pollen mother cell.and it is likely to be involved in TGMS in the rice line 'Annong S-1'.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
The State Key Laboratory of Plant Genomics,Institute of Genetics and Developmental Biology,CAS.<br />
<br />
==References==<br />
# Chun-Jiang Zhou, Jun Li and Ji-Cheng Zou.2006.Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (''OsAPT2'') and its association with TGMS.Plant Molecular Biology (2006) 60:365–376<br />
# WENG Man-li,WANG Wang and ZHOU Chun-jiang.Cloning and genetic transformation of a novel rice gene OsAPT2.Journal of Hunan Agricultural University (Natural Sciences)(2007)33.<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os04g0504000|<br />
Description = Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT)|<br />
Version = NM_001059779.1 GI:115459287 GeneID:4336327|<br />
Length = 4794 bp|<br />
Definition = Oryza sativa Japonica Group Os04g0504000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
1. 闫成业;刘艳;牟同敏<br />
分子标记辅助选择聚合Xa7、Xa21和cry1C*基因改良杂交水稻金优207的白叶枯病和螟虫抗性<br />
杂交水稻, 2013, 28(5): 52-59<br />
2. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin<br />
Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight<br />
Molecular Breeding, 2012, 30(4): 1601-1610<br />
3. Chang-Jin Park;Pamela C. Ronald<br />
Cleavage and nuclear localization of the rice XA21 immune receptor<br />
Nature Communications, 2012, 3(6): 920<br />
4. Qiang Gan;Hui Bai;Xianfeng Zhao;Yong Tao;Haipan Zeng;Yuning Han;Wenyuan Song;Lihuang Zhu;Guozhen Liu<br />
Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice<br />
Journal of Integrative Plant Biology, 2011, 53(4): 300-311<br />
5. Fang Chen;Ming-Jun Gao;Yan-Song Miao;Yue-Xing Yuan;Mu-Yang Wang;Qun Li;Bi-Zeng Mao;Li-Wen Jiang;Zu-Hua He<br />
Plasma Membrane Localization and Potential Endocytosis of Constitutively Expressed XA21 Proteins in Transgenic Rice<br />
Molecular Plant, 2010, 3(5): 917-926<br />
6. Chang-Jin Park;Sang-Won Lee;Mawsheng Chern;Rita Sharma;Patrick E. Canlas;Min-Young Song;Jong-Seong Jeon;Pamela C. Ronald<br />
Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae<br />
Plant Science, 2010, 179(5): 466-471<br />
7. Xuewei Chen;Mawsheng Chern;Patrick E. Canlas;Deling Ruan;Caiying Jiang;Pamela C. Ronald<br />
An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity<br />
Proc Natl Acad Sci USA, 2010, 107(17): 8029-8034<br />
8. Sang-Won Lee;Sang-Wook Han;Malinee Sririyanum;Chang-Jin Park;Young-Su Seo;Pamela C. Ronald<br />
A Type I–Secreted, Sulfated Peptide Triggers XA21-Mediated Innate Immunity<br />
Science, 2009, 326(5954): 850-853<br />
9. 白辉;李莉云;刘国振<br />
水稻抗白叶枯病基因Xa21的研究进展<br />
遗传, 2006, 28(6): 745-753<br />
10. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar<br />
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India<br />
Phytopathology, 2001, 85(5): 506-512<br />
11. Guo-Liang Wang;De-Ling Ruan;Wen-Yuan Song;Steve Sideris;LiLi Chen;Li-Ya Pi;Shiping Zhang;Zhen Zhang;Claude Fauquet;Brandon S. Gaut;Maureen C. Whalen;and Pamela C. Ronal<br />
Xa21D Encodes a Receptor-like Molecule with a Leucine-Rich Repeat Domain That Determines Race-Specific Recognition and Is Subject to Adaptive Evolution<br />
The Plant Cell, 1998, 10(5): 765-780<br />
12. Wen-Yuan Song;Guo-Liang Wang;Li-Li Chen;Han-Suk Kim;Li-Ya Pi;Tom Holsten;J. Gardner;Bei Wang;Wen-Xue Zhai;Li-Huang Zhu;Claude Fauquet;Pamela Ronald<br />
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21<br />
Science, 1995, 270(): 1804-1806<br />
13. Pamela C. Ronald;Beng Albano;Rodante Tabien;Lleva Abenes;Kung-sheng Wu;Susan McCouch and Steven D. Tanksley<br />
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21<br />
Molecular and General Genetics, 1992, 236(1): 113-120|<br />
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|<br />
AP = Chromosome 4:25564488..25569281|<br />
CDS = 25564611..25564779,25564904..25565014,25566857..25566949,25567372..25567521,25568371..25568429<br>,25568526..25568582|<br />
GCID = <gbrowseImage1><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008397:25564488..25569281<br />
source=RiceChromosome04<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttgaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatag</cdnaseq>|<br />
AA = <aaseq>MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAIS DAIRVVPHFPKPGIMFNDITALLLRPAAFKDAVDMFVERYRGMRIAAVAGIEARGFIF GPAIALAIGAKFIPLRKPKKLPGEVISETYILEYGTDCLEMHVGATEPGERVVVVDDL VATGGTLCAAIKLLERAGADVVECACLIGLPKYKNFYKLNGKPVYILVESRK</aaseq>|<br />
DNA = <dnaseqindica>124..292#417..527#2370..2462#2885..3034#3884..3942#4039..4095#gatagccggaggaagaagaagaagcaacagcagcagtcaagccaacccgtccggcgagcaagaagcaaccgaggcagcaaaaggaggaggagggaggactccactgttcgcttgtatcgtcttatgggggaagaggatatcagcaacgacagcaagagcagctgcggctgcgaggacggcacggtggaggctccggcggctgcggcgccgaaggagaacggccgagccgcggacccgcgcctccaggccatctccgacgccatccgcgtcgtcccgcacttccccaagccaggtccgccgcccgtactcactagctagctaagctcgatcgatcgatgtcgaaaccgttttaagaccacgccaaatcagttgaccacgtgaaaccaagtcacgcgcggctctacgttaatttgcagggatcatgttcaacgacatcacggcgctgctgctccggcccgccgcgttcaaggacgccgtggacatgttcgtcgagcgctaccgcggcatgcgcatcgcggccgtcgcaggtaaacactataaacagccgtacgtccaagcactctcccaaccaaaccggtcaaaccatgatcctttgcgcggcgcctttgccctcgcgtcgccatgtgccggcggcgcggcgcggcgccgagcctgacaccaacgccgacggcgacggccgagccgagctgtgggactgaggcggcggtgttgtgagattccgtaatatctttgggggagatctttcctgctccttttgtccccctacgctttgtcgtttgatcaggtcatcatcccagtcaccacctgcagcaattttttcccctctcacctcctcctactatttctcaatataaacaatttttgcgataattaaactccggcagcatcagcagcggccgtgcgggcgcaacagtggtggtggtagaccggtaggtgcatgcgctgctgaactgtgacaactgtcgatacacgcacgtatgtcgaacataggagtactatactagtgtatcataggagtatgtctttctcgccgtctggtccagaggggcaataaatgcaggggccaatgcctccacgggccacggctgtggatggagcagccgcaggaaaggcgccgcgccgaggcggagaggagaatgccgatgcctccctgcaccgcacgctacgtactacgtgcgccgcgggcgcgggcgcatgtgggggatgtgcgtgtgcatccgtccgtccgtccgtgcgcgcgtggcgcgtagtagcgcggtggtactgtatggtccacggctgcgcgctccgaggcgccgatccgcgtgcgtgcgtgcggccagaatgtacgtacgcctcgtcgcgtcgcgtcgagcgagcgctcgctggttggctggcgcggctgcggctggctggctccgccgctcgcggggctccgctggggccagcggaatcttgggcgattcaatgcgcggatcggagccatgtacacggccggtgattgggtgggacgagagaaacaacaaacaacgagagatcgatcgatcgatcaacgcacggagagtcggagaggtcgcgattccttcctatgacacgctcggtggtagcaggctgggcagcggggagtcagttcggtctcttccctcggctgcgttgtggtgtggggtgagcggggaccggcccccagccgctctgtgggccggggatcccctccctcatcggacggccatgattgcgcacatgcggtgtcggaggtctcgctctctcccgtgtagtgtcgtcatctttggaacaatcacatgatggtttccgtttggttttgattctatgcagtgcaaactgagctcgctttcgctcagtgcatgtactgcacgacctcacgtttttcgttctagatgcaaaccggccgcgagtacaatgatctgatttttttagattgggagttggagtacagagtctgattagcttttcccggccgtgtgtgtttgctcgaagcactttactttcacggcattatggcgtttgttgtgacataaacctccaataattgaatagccatcgcaacgtcatcgtatttatactggctagttgaaagtttttactcctacaaggctacaatgaacatcgaacactgtgttgcaaaagtacatatggaagttctatcagggacgtttgctagtgatggatactttaaaattgtagatttctagtagtaaatttggtgggaaaaactgtagttctacgaaaaatttgatgttaaacatataactttgggatcttacatcttaaatttatagttttgtcaaatatgtgtgttttgtgaattttactgttataaatctaatttccatgtgtatatatatatggtgaaattctccaacttatgctaggtattgaagccagaggattcatatttggcccagcgatcgcactagcaattggagcaaaattcataccgttgcgcaaacctaagaaactcccaggtgaactacggactatgtcatttcgctcatacaaggagcatacctacatcctaaaacataaggaattttacccatatagtttacatgagtaaaatcccttatattttaggatgaatgtattaatttgtttactcgcacacagtacatttgcttccactgaaaatgctgtagcaacattatatatgtactactgctactactcatagaacctgttagcacatgaaccactcatcatgtcagctactgaaatagttatagcttgagtacactcaataaatgttgtttgaggatcattgaaatggtctgatgaatagaactgtagattttattccgctttggtactggtatacagctatatactacaaactcaatatagagttgctagtagaatgtgctaacagtggcttttacaaatcttaaaggtgaggtaatttctgagacctatatacttgagtatgggacggattgtttggagatgcatgttggagctactgaacctggtgagcgcgtagtggtcgttgatgatttagttgcaaccggtggaacactttgtgctgcaataaaacttcttggtgagtaactaaccgtttgtctcctcagcatgtatgcaaatgtaattcattgactgtggacaacactaaacaagtacgtacgtaagtgttaaaaaaatactattgttattttcagtttgctatgctctataatgctacttctaggtgacttatcatatgttttaacttctcaagtctgtcgaataataaaacacacattttaagctgaaaatttggttttcctgaacagataagcaatagaggaccttgagttatttaggatatttgctgactgttgtggaaaggatattctgatattttcttgtgataataacaaacattatattctgacttcaaaatgattcatattaaacgaaaatatcttaaatacatagtgccggacaaagaaagtgagagaaagtggaagaaaatggagtactgaatgtgtatatcatgtactactaatttagtaaaacatacaggacgtgaagctgaatatcatggatcatagtggagaagatcatgtaacattgtcaagcatcaaacagctcagtgataatatgtagagtagaggggcatcatgttctgttgaccttaagaaaagtatgctccccagtgagtcaacgggacaaactgtttattcatgggacaaaatcctgtccggaagatatgtcctattgggtggctaatcacctacatgcatgataagactggaggcataattttgatcttatcttacaaccgaaaagttcgtggataagaatcgagcattcaagaccctcccttttctctttttatgacactaaaacaactaactattctagtgtttacatctgtttatgcttattgctcaaactatttgcattccagaacgagctggagctgacgtagttgagtgtgcatgcctcattggccttcctaagtataaggtacactcatattttggttaagaaaattgagaatcgcatctcacttttaataccttgatcaattatttgcttactggacttgcatgttttatacagaatttctacaagctcaatggaaaaccagtttatatactggtggagtctcgcaaatagaaagtaacaaagcaatgatcaggcaagcatcacttttatgcttgaaattttctccaatatctccttttattttgataataatgtttgtaccatgttgtgcaatacagctaggctgcattattgtttgttcatggtcttttatcaatgcactgcttccatacacagtcgacatgagggtttaaaatgatgtgtactgttcttgacaagagtacacatgttgttaggtcctgacaattggtttataaaactttaaaatttctggatttttttatccgggtcagtgaaatattaatattgaaacgaggggcaaattgtgaatattgagcttctaattcatgtttccccctcctatcctttttcagaaagattcacagcttcattcctttgcaagagcacgttggaggaattggatcggtattggtgagcagtgactctgcacgcagcacaactgttaatgtaatctcggtggagagatgatgagatagatgaaatgtaatctttgtagcacgactagttttccaggtagtgtcgacgacgagagcttgtagttatttctgtcgggaactgttgattacccggaagagaaagggattaagggaattgccatcccgcttgttcagttcctcttttcttttctagtgacaattgtccttttcgccgcacttgatgatttatacttctttggtaaaactaccactc</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059779.1 RefSeq:Os04g0504000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 4]]<br />
[[Category:Chromosome 4]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Atp1&diff=179880Atp12014-06-07T07:11:03Z<p>Liuxianju: /* References */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Please input expression information here.<br />
rice mitochondria<br />
the transcription of riceatp1starts from at least eight positions, as follows:!678 (h),!470 (g),!441 (f),!438 (e),<br />
!427 (d),!423 (c),!273(b) and!219 (a) ofatp1 (Fig. 3).<br />
The sequences around the eight sites of initiation of transcription of the riceatp1gene were compared with the consensus promotor sequence of rice mitochondrial<br />
genes that was proposed previously (Nakazono etal.1995 b).<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
Nakazono M, Tsutsumi N, Hirai A (1995 b) The CRTA motif is<br />
present in the promotors of mitochondrial genes of rice. Plant Sci<br />
105:227Ð234<br />
<br />
==Structured Information==<br />
{{Mitochondrion|<br />
GeneName = atp1|<br />
Annotated Information = protein coding; the gene of protein Atp1(ATP synthase F0 subunit 1).|<br />
Function = Involved in the synthesis of ATP|This is one of the mitochondrial-encoded genes, which encodes one of the ATP sythases of the respiratory chain.Encode the αsubunit of F1.<br />
Expression = With the in vitro capping method, ribonuclease protection experiments and from primer extension analysis, it has been prove that rice atp1 is transcribed from multiple initiation sites.Further experiments prove that there are at least eight transcription initiation sites of the rice mitochondrial atp1 gene. This only exist in rice atp1 gene, which are different from other plant species, such as wheat , maize and ''Oenothera''. Rice atp1 is present in a unique environment and is transcribed at a high level. The multiple initiation sites of the rice mitochondrial atp1 gene is also regulated in different ways.|<br />
Evolution = R1c might have evolved from R1b through elimination of its partial segments at the end containing the atp1 gene, which was integrated in the soybean genome at another location.The mitochondrial DNA is more conservative and the evolution rate of chloroplast DNA is higher than mitochondrial DNA in rice.|During the evolution peocess, the majarity of the mitochondria genetics content were transferred into the nucleus of the cell.Mitochondrial biogenesis today relies on the coordinated regulation of both the nuclear genomes and the mitochondrial genomes. So the expression of rice atp1 now is influence by bothe the nuclear genomes and the mitochondrial genomes.<br />
Labs wodking on this gene = Laboratory of Plant Molecular Genetics; Key Laboratory of Crop Heterosis and Utilization of Ministry of Education; Beijing Key Laboratory of Crop Genetic Improvement; Key Laboratory of MOE for Plant Developmental Biology; State Key Laboratory of Pharmaceutical Biotechnology; Key Laboratory of Tea Biochemistry and Biotechnology; MOE Key Laboratory of Bioinformatics and Bioinformatics Div. TNLIST.|Laboratory of Radiation Genetics, Faculty of Agriculture, The University<br />
of Tokyo. Laboratory of Plant Breeding, Faculty of Agriculture, The University<br />
of Tokyo. <br />
References = Notsu Y, Masood S, Nishikawa T, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants[J]. Molecular Genetics and Genomics, 2002, 268(4): 434-445.<br />
Wei X, Wang R, Cao L, et al. Origin of Oryza sativa in China inferred by nucleotide polymorphisms of organelle DNA[J]. PloS one, 2012, 7(11): e49546.<br />
Li S, Yang D, Zhu Y. Characterization and use of male sterility in hybrid rice breeding[J]. Journal of Integrative Plant Biology, 2007, 49(6): 791-804.<br />
Tan Y P, Li S Q, Xie H W, et al. Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility-and fertility restoration-related genes in Oryza species[J]. Theoretical and Applied Genetics, 2011, 122(1): 9-19.<br />
Wang B, Yuan J, Liu J, et al. Codon usage bias and determining forces in green plant mitochondrial genomes[J]. Journal of integrative plant biology, 2011, 53(4): 324-334.<br />
Pasentsis K, Falara V, Pateraki I, et al. Identification and expression profiling of low oxygen regulated genes from Citrus flavedo tissues using RT-PCR differential display[J]. Journal of experimental botany, 2007, 58(8): 2203-2216.<br />
Duroux L, Welinder K G. The peroxidase gene family in plants: a phylogenetic overview[J]. Journal of molecular evolution, 2003, 57(4): 397-407.<br />
Zhu L, Deng W W, Ye A H, et al. Cloning of two cDNAs encoding a family of ATP sulfurylase from< i> Camellia sinensis</i> related to selenium or sulfur metabolism and functional expression in< i> Escherichia coli</i>[J]. Plant Physiology and Biochemistry, 2008, 46(8): 731-738.<br />
Chen X, Wang Y, Li J, et al. Mitochondrial proteome during salt stress-induced programmed cell death in rice[J]. Plant Physiology and Biochemistry, 2009, 47(5): 407-415.<br />
Lei B, Li S, Liu G, et al. Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants[J]. Plant Systematics and Evolution, 2013, 299(10): 1889-1897.|<br />
Mikio Nakazono, Mayuko Ishikawa, et al. Multiple initiation sites for transcription of a gene<br />
for subunit 1 of F1-ATPase (atp1 ) in rice mitochondria[J]. Curr Genet, 1996, 29: 417-422.<br />
Catherine Colas des Francs-Small, Ian Small. Surrogate mutants for studying mitochondrially encoded functions[J]. Biochimie, 2014, 234-242.<br />
Kamel Hammani, Philippe Giege. RNA metabolism in plant mitochondria[J]. Trends in plant sciences, 2014, 19: 380-389.<br />
<br />
Structured information = The product of the gene is the subunit of the ATP synthase F0(ATP synthase F0 subunit 1)<br />
Description = ATP synthase F0 subunit 1|<br />
Version = GeneID:6450183|<br />
Length = 1530 bp|<br />
Definition = Oryza sativa Japonica Group ''atp1'', Mitochondrion gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Mitochondrion|Mitochondrion]]|<br />
AP = Mitochondrion:352379..353908|<br />
CDS = 352379..353908|<br />
GCID = <gbrowseImage1><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
AA = <aaseq>MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILSTINPELLKSFNEKGGLTNERKIELDAFLKQTAKEIN</aaseq>|<br />
DNA = <dnaseqindica>1..1530#atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctgtgatcgaatgccactagacagaatttctcaatatgaaaaagccattctaagtactattaatccagaattactaaaatccttcaacgaaaaagggggattaactaacgaaagaaagattgaacctgatgcttctttaaaacaaactgcgaaggagattaattag</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/gene?term=6450183 NCBI Gene:atp1]<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Mitochondrion]]<br />
[[Category:Mitochondrion]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Atp1&diff=179879Atp12014-06-07T07:10:44Z<p>Liuxianju: /* Expression */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Please input expression information here.<br />
rice mitochondria<br />
the transcription of riceatp1starts from at least eight positions, as follows:!678 (h),!470 (g),!441 (f),!438 (e),<br />
!427 (d),!423 (c),!273(b) and!219 (a) ofatp1 (Fig. 3).<br />
The sequences around the eight sites of initiation of transcription of the riceatp1gene were compared with the consensus promotor sequence of rice mitochondrial<br />
genes that was proposed previously (Nakazono etal.1995 b).<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{Mitochondrion|<br />
GeneName = atp1|<br />
Annotated Information = protein coding; the gene of protein Atp1(ATP synthase F0 subunit 1).|<br />
Function = Involved in the synthesis of ATP|This is one of the mitochondrial-encoded genes, which encodes one of the ATP sythases of the respiratory chain.Encode the αsubunit of F1.<br />
Expression = With the in vitro capping method, ribonuclease protection experiments and from primer extension analysis, it has been prove that rice atp1 is transcribed from multiple initiation sites.Further experiments prove that there are at least eight transcription initiation sites of the rice mitochondrial atp1 gene. This only exist in rice atp1 gene, which are different from other plant species, such as wheat , maize and ''Oenothera''. Rice atp1 is present in a unique environment and is transcribed at a high level. The multiple initiation sites of the rice mitochondrial atp1 gene is also regulated in different ways.|<br />
Evolution = R1c might have evolved from R1b through elimination of its partial segments at the end containing the atp1 gene, which was integrated in the soybean genome at another location.The mitochondrial DNA is more conservative and the evolution rate of chloroplast DNA is higher than mitochondrial DNA in rice.|During the evolution peocess, the majarity of the mitochondria genetics content were transferred into the nucleus of the cell.Mitochondrial biogenesis today relies on the coordinated regulation of both the nuclear genomes and the mitochondrial genomes. So the expression of rice atp1 now is influence by bothe the nuclear genomes and the mitochondrial genomes.<br />
Labs wodking on this gene = Laboratory of Plant Molecular Genetics; Key Laboratory of Crop Heterosis and Utilization of Ministry of Education; Beijing Key Laboratory of Crop Genetic Improvement; Key Laboratory of MOE for Plant Developmental Biology; State Key Laboratory of Pharmaceutical Biotechnology; Key Laboratory of Tea Biochemistry and Biotechnology; MOE Key Laboratory of Bioinformatics and Bioinformatics Div. TNLIST.|Laboratory of Radiation Genetics, Faculty of Agriculture, The University<br />
of Tokyo. Laboratory of Plant Breeding, Faculty of Agriculture, The University<br />
of Tokyo. <br />
References = Notsu Y, Masood S, Nishikawa T, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants[J]. Molecular Genetics and Genomics, 2002, 268(4): 434-445.<br />
Wei X, Wang R, Cao L, et al. Origin of Oryza sativa in China inferred by nucleotide polymorphisms of organelle DNA[J]. PloS one, 2012, 7(11): e49546.<br />
Li S, Yang D, Zhu Y. Characterization and use of male sterility in hybrid rice breeding[J]. Journal of Integrative Plant Biology, 2007, 49(6): 791-804.<br />
Tan Y P, Li S Q, Xie H W, et al. Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility-and fertility restoration-related genes in Oryza species[J]. Theoretical and Applied Genetics, 2011, 122(1): 9-19.<br />
Wang B, Yuan J, Liu J, et al. Codon usage bias and determining forces in green plant mitochondrial genomes[J]. Journal of integrative plant biology, 2011, 53(4): 324-334.<br />
Pasentsis K, Falara V, Pateraki I, et al. Identification and expression profiling of low oxygen regulated genes from Citrus flavedo tissues using RT-PCR differential display[J]. Journal of experimental botany, 2007, 58(8): 2203-2216.<br />
Duroux L, Welinder K G. The peroxidase gene family in plants: a phylogenetic overview[J]. Journal of molecular evolution, 2003, 57(4): 397-407.<br />
Zhu L, Deng W W, Ye A H, et al. Cloning of two cDNAs encoding a family of ATP sulfurylase from< i> Camellia sinensis</i> related to selenium or sulfur metabolism and functional expression in< i> Escherichia coli</i>[J]. Plant Physiology and Biochemistry, 2008, 46(8): 731-738.<br />
Chen X, Wang Y, Li J, et al. Mitochondrial proteome during salt stress-induced programmed cell death in rice[J]. Plant Physiology and Biochemistry, 2009, 47(5): 407-415.<br />
Lei B, Li S, Liu G, et al. Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants[J]. Plant Systematics and Evolution, 2013, 299(10): 1889-1897.|<br />
Mikio Nakazono, Mayuko Ishikawa, et al. Multiple initiation sites for transcription of a gene<br />
for subunit 1 of F1-ATPase (atp1 ) in rice mitochondria[J]. Curr Genet, 1996, 29: 417-422.<br />
Catherine Colas des Francs-Small, Ian Small. Surrogate mutants for studying mitochondrially encoded functions[J]. Biochimie, 2014, 234-242.<br />
Kamel Hammani, Philippe Giege. RNA metabolism in plant mitochondria[J]. Trends in plant sciences, 2014, 19: 380-389.<br />
<br />
Structured information = The product of the gene is the subunit of the ATP synthase F0(ATP synthase F0 subunit 1)<br />
Description = ATP synthase F0 subunit 1|<br />
Version = GeneID:6450183|<br />
Length = 1530 bp|<br />
Definition = Oryza sativa Japonica Group ''atp1'', Mitochondrion gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Mitochondrion|Mitochondrion]]|<br />
AP = Mitochondrion:352379..353908|<br />
CDS = 352379..353908|<br />
GCID = <gbrowseImage1><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
AA = <aaseq>MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILSTINPELLKSFNEKGGLTNERKIELDAFLKQTAKEIN</aaseq>|<br />
DNA = <dnaseqindica>1..1530#atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctgtgatcgaatgccactagacagaatttctcaatatgaaaaagccattctaagtactattaatccagaattactaaaatccttcaacgaaaaagggggattaactaacgaaagaaagattgaacctgatgcttctttaaaacaaactgcgaaggagattaattag</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/gene?term=6450183 NCBI Gene:atp1]<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Mitochondrion]]<br />
[[Category:Mitochondrion]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Atp1&diff=179869Atp12014-06-07T07:03:27Z<p>Liuxianju: /* Expression */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Please input expression information here.<br />
rice mitochondria<br />
the transcription of riceatp1starts from at least eight positions,<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{Mitochondrion|<br />
GeneName = atp1|<br />
Annotated Information = protein coding; the gene of protein Atp1(ATP synthase F0 subunit 1).|<br />
Function = Involved in the synthesis of ATP|This is one of the mitochondrial-encoded genes, which encodes one of the ATP sythases of the respiratory chain.Encode the αsubunit of F1.<br />
Expression = With the in vitro capping method, ribonuclease protection experiments and from primer extension analysis, it has been prove that rice atp1 is transcribed from multiple initiation sites.Further experiments prove that there are at least eight transcription initiation sites of the rice mitochondrial atp1 gene. This only exist in rice atp1 gene, which are different from other plant species, such as wheat , maize and ''Oenothera''. Rice atp1 is present in a unique environment and is transcribed at a high level. The multiple initiation sites of the rice mitochondrial atp1 gene is also regulated in different ways.|<br />
Evolution = R1c might have evolved from R1b through elimination of its partial segments at the end containing the atp1 gene, which was integrated in the soybean genome at another location.The mitochondrial DNA is more conservative and the evolution rate of chloroplast DNA is higher than mitochondrial DNA in rice.|During the evolution peocess, the majarity of the mitochondria genetics content were transferred into the nucleus of the cell.Mitochondrial biogenesis today relies on the coordinated regulation of both the nuclear genomes and the mitochondrial genomes. So the expression of rice atp1 now is influence by bothe the nuclear genomes and the mitochondrial genomes.<br />
Labs wodking on this gene = Laboratory of Plant Molecular Genetics; Key Laboratory of Crop Heterosis and Utilization of Ministry of Education; Beijing Key Laboratory of Crop Genetic Improvement; Key Laboratory of MOE for Plant Developmental Biology; State Key Laboratory of Pharmaceutical Biotechnology; Key Laboratory of Tea Biochemistry and Biotechnology; MOE Key Laboratory of Bioinformatics and Bioinformatics Div. TNLIST.|Laboratory of Radiation Genetics, Faculty of Agriculture, The University<br />
of Tokyo. Laboratory of Plant Breeding, Faculty of Agriculture, The University<br />
of Tokyo. <br />
References = Notsu Y, Masood S, Nishikawa T, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants[J]. Molecular Genetics and Genomics, 2002, 268(4): 434-445.<br />
Wei X, Wang R, Cao L, et al. Origin of Oryza sativa in China inferred by nucleotide polymorphisms of organelle DNA[J]. PloS one, 2012, 7(11): e49546.<br />
Li S, Yang D, Zhu Y. Characterization and use of male sterility in hybrid rice breeding[J]. Journal of Integrative Plant Biology, 2007, 49(6): 791-804.<br />
Tan Y P, Li S Q, Xie H W, et al. Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility-and fertility restoration-related genes in Oryza species[J]. Theoretical and Applied Genetics, 2011, 122(1): 9-19.<br />
Wang B, Yuan J, Liu J, et al. Codon usage bias and determining forces in green plant mitochondrial genomes[J]. Journal of integrative plant biology, 2011, 53(4): 324-334.<br />
Pasentsis K, Falara V, Pateraki I, et al. Identification and expression profiling of low oxygen regulated genes from Citrus flavedo tissues using RT-PCR differential display[J]. Journal of experimental botany, 2007, 58(8): 2203-2216.<br />
Duroux L, Welinder K G. The peroxidase gene family in plants: a phylogenetic overview[J]. Journal of molecular evolution, 2003, 57(4): 397-407.<br />
Zhu L, Deng W W, Ye A H, et al. Cloning of two cDNAs encoding a family of ATP sulfurylase from< i> Camellia sinensis</i> related to selenium or sulfur metabolism and functional expression in< i> Escherichia coli</i>[J]. Plant Physiology and Biochemistry, 2008, 46(8): 731-738.<br />
Chen X, Wang Y, Li J, et al. Mitochondrial proteome during salt stress-induced programmed cell death in rice[J]. Plant Physiology and Biochemistry, 2009, 47(5): 407-415.<br />
Lei B, Li S, Liu G, et al. Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants[J]. Plant Systematics and Evolution, 2013, 299(10): 1889-1897.|<br />
Mikio Nakazono, Mayuko Ishikawa, et al. Multiple initiation sites for transcription of a gene<br />
for subunit 1 of F1-ATPase (atp1 ) in rice mitochondria[J]. Curr Genet, 1996, 29: 417-422.<br />
Catherine Colas des Francs-Small, Ian Small. Surrogate mutants for studying mitochondrially encoded functions[J]. Biochimie, 2014, 234-242.<br />
Kamel Hammani, Philippe Giege. RNA metabolism in plant mitochondria[J]. Trends in plant sciences, 2014, 19: 380-389.<br />
<br />
Structured information = The product of the gene is the subunit of the ATP synthase F0(ATP synthase F0 subunit 1)<br />
Description = ATP synthase F0 subunit 1|<br />
Version = GeneID:6450183|<br />
Length = 1530 bp|<br />
Definition = Oryza sativa Japonica Group ''atp1'', Mitochondrion gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Mitochondrion|Mitochondrion]]|<br />
AP = Mitochondrion:352379..353908|<br />
CDS = 352379..353908|<br />
GCID = <gbrowseImage1><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
AA = <aaseq>MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILSTINPELLKSFNEKGGLTNERKIELDAFLKQTAKEIN</aaseq>|<br />
DNA = <dnaseqindica>1..1530#atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctgtgatcgaatgccactagacagaatttctcaatatgaaaaagccattctaagtactattaatccagaattactaaaatccttcaacgaaaaagggggattaactaacgaaagaaagattgaacctgatgcttctttaaaacaaactgcgaaggagattaattag</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/gene?term=6450183 NCBI Gene:atp1]<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Mitochondrion]]<br />
[[Category:Mitochondrion]]</div>Liuxianjuhttps://ngdc.cncb.ac.cn/ricewiki/index.php?title=Atp1&diff=179863Atp12014-06-07T07:00:49Z<p>Liuxianju: /* Expression */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Please input expression information here.<br />
rice mitochondria<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{Mitochondrion|<br />
GeneName = atp1|<br />
Annotated Information = protein coding; the gene of protein Atp1(ATP synthase F0 subunit 1).|<br />
Function = Involved in the synthesis of ATP|This is one of the mitochondrial-encoded genes, which encodes one of the ATP sythases of the respiratory chain.Encode the αsubunit of F1.<br />
Expression = With the in vitro capping method, ribonuclease protection experiments and from primer extension analysis, it has been prove that rice atp1 is transcribed from multiple initiation sites.Further experiments prove that there are at least eight transcription initiation sites of the rice mitochondrial atp1 gene. This only exist in rice atp1 gene, which are different from other plant species, such as wheat , maize and ''Oenothera''. Rice atp1 is present in a unique environment and is transcribed at a high level. The multiple initiation sites of the rice mitochondrial atp1 gene is also regulated in different ways.|<br />
Evolution = R1c might have evolved from R1b through elimination of its partial segments at the end containing the atp1 gene, which was integrated in the soybean genome at another location.The mitochondrial DNA is more conservative and the evolution rate of chloroplast DNA is higher than mitochondrial DNA in rice.|During the evolution peocess, the majarity of the mitochondria genetics content were transferred into the nucleus of the cell.Mitochondrial biogenesis today relies on the coordinated regulation of both the nuclear genomes and the mitochondrial genomes. So the expression of rice atp1 now is influence by bothe the nuclear genomes and the mitochondrial genomes.<br />
Labs wodking on this gene = Laboratory of Plant Molecular Genetics; Key Laboratory of Crop Heterosis and Utilization of Ministry of Education; Beijing Key Laboratory of Crop Genetic Improvement; Key Laboratory of MOE for Plant Developmental Biology; State Key Laboratory of Pharmaceutical Biotechnology; Key Laboratory of Tea Biochemistry and Biotechnology; MOE Key Laboratory of Bioinformatics and Bioinformatics Div. TNLIST.|Laboratory of Radiation Genetics, Faculty of Agriculture, The University<br />
of Tokyo. Laboratory of Plant Breeding, Faculty of Agriculture, The University<br />
of Tokyo. <br />
References = Notsu Y, Masood S, Nishikawa T, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants[J]. Molecular Genetics and Genomics, 2002, 268(4): 434-445.<br />
Wei X, Wang R, Cao L, et al. Origin of Oryza sativa in China inferred by nucleotide polymorphisms of organelle DNA[J]. PloS one, 2012, 7(11): e49546.<br />
Li S, Yang D, Zhu Y. Characterization and use of male sterility in hybrid rice breeding[J]. Journal of Integrative Plant Biology, 2007, 49(6): 791-804.<br />
Tan Y P, Li S Q, Xie H W, et al. Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility-and fertility restoration-related genes in Oryza species[J]. Theoretical and Applied Genetics, 2011, 122(1): 9-19.<br />
Wang B, Yuan J, Liu J, et al. Codon usage bias and determining forces in green plant mitochondrial genomes[J]. Journal of integrative plant biology, 2011, 53(4): 324-334.<br />
Pasentsis K, Falara V, Pateraki I, et al. Identification and expression profiling of low oxygen regulated genes from Citrus flavedo tissues using RT-PCR differential display[J]. Journal of experimental botany, 2007, 58(8): 2203-2216.<br />
Duroux L, Welinder K G. The peroxidase gene family in plants: a phylogenetic overview[J]. Journal of molecular evolution, 2003, 57(4): 397-407.<br />
Zhu L, Deng W W, Ye A H, et al. Cloning of two cDNAs encoding a family of ATP sulfurylase from< i> Camellia sinensis</i> related to selenium or sulfur metabolism and functional expression in< i> Escherichia coli</i>[J]. Plant Physiology and Biochemistry, 2008, 46(8): 731-738.<br />
Chen X, Wang Y, Li J, et al. Mitochondrial proteome during salt stress-induced programmed cell death in rice[J]. Plant Physiology and Biochemistry, 2009, 47(5): 407-415.<br />
Lei B, Li S, Liu G, et al. Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants[J]. Plant Systematics and Evolution, 2013, 299(10): 1889-1897.|<br />
Mikio Nakazono, Mayuko Ishikawa, et al. Multiple initiation sites for transcription of a gene<br />
for subunit 1 of F1-ATPase (atp1 ) in rice mitochondria[J]. Curr Genet, 1996, 29: 417-422.<br />
Catherine Colas des Francs-Small, Ian Small. Surrogate mutants for studying mitochondrially encoded functions[J]. Biochimie, 2014, 234-242.<br />
Kamel Hammani, Philippe Giege. RNA metabolism in plant mitochondria[J]. Trends in plant sciences, 2014, 19: 380-389.<br />
<br />
Structured information = The product of the gene is the subunit of the ATP synthase F0(ATP synthase F0 subunit 1)<br />
Description = ATP synthase F0 subunit 1|<br />
Version = GeneID:6450183|<br />
Length = 1530 bp|<br />
Definition = Oryza sativa Japonica Group ''atp1'', Mitochondrion gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Mitochondrion|Mitochondrion]]|<br />
AP = Mitochondrion:352379..353908|<br />
CDS = 352379..353908|<br />
GCID = <gbrowseImage1><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_011033:352379..353908<br />
source=Rice_Japonica_Mitochondrion<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
AA = <aaseq>MEFSPRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILSTINPELLKSFNEKGGLTNERKIELDAFLKQTAKEIN</aaseq>|<br />
DNA = <dnaseqindica>1..1530#atggaattctcacccagagctgcggaactcacgactctattagaaagtagaatgaccaacttttacacgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggattgcacgtgtttatggattgaacgagattcaagctggagaaatggtggaatttgccagcggtgtgaaaggaatagccttgaatcttgagaatgagaatgtaggtattgttgtctttggtagtgataccgctattaaagaaggagatcttgtcaagcgcactggatctattgtggatgttcctgcgggaaaggccatgttaggccgtgtggtcgacgccttgggagtacctattgatggaaaaggggctctaagcgatcacgaacgaagacgtgtcgaagtgaaagccccagggattattgaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcaacgagaacttataatcggggacagacaaactggaaaaacagcaatagctatcgatactatattaaaccaaaagcaaatgaactcaaggggcacaaatgagagtgagacattgtattgtgtctatgttgcgattggacaaaaacgctcgactgtggcacaattagttcaaattctttcagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctgcaatttctggccccatattcagggtgtgccatgggggaatatttccgcgataatggaatgcacgcattaattatatatgatgatctaagtaaacaggcggtggcatatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggggatgttttctatttacattcccgtctcttagaaagagccgctaaacgatcggaccagacaggtgcaggtagcttgactgcgttacccgtgattgaaacacaagctggagacgtatcggcctatatccccaccaatgtgatctccattacagatggacaaatctgtttggaaacagagctcttttatcgcggaattagacctgctattaacgttggcttatccgtcagtcgcgtcgggtctgccgctcagttgaaagctatgaaacaagtctgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgccttcgctcaatttgggtcagaccttgatgctgcgactcaggcattactcaatagaggtgcaaggcttacagaagtgcccaaacaaccacaatatgaaccacttccaattgaaaaacaaattgttgtgatttatgctgctgtcaacggcttctgtgatcgaatgccactagacagaatttctcaatatgaaaaagccattctaagtactattaatccagaattactaaaatccttcaacgaaaaagggggattaactaacgaaagaaagattgaacctgatgcttctttaaaacaaactgcgaaggagattaattag</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/gene?term=6450183 NCBI Gene:atp1]<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Mitochondrion]]<br />
[[Category:Mitochondrion]]</div>Liuxianju