http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Liying 2026-08-27T17:47:22Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173840 2014-05-29T03:43:32Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|thumb|100px|frame|center|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|thumb|100px|frame|center|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> <br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|thumb|100px|frame|center|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> <br /> [[File:dwt1-8.jpg|thumb|100px|frame|center|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> <br /> [[File:dwt1-9.jpg|thumb|100px|frame|center|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173839 2014-05-29T03:41:49Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|100px|frame|center|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|100px|frame|center|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> <br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|100px|frame|center|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> <br /> [[File:dwt1-8.jpg|100px|frame|center|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> <br /> [[File:dwt1-9.jpg|100px|frame|center|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173838 2014-05-29T03:40:59Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|300px|frame|center|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|300px|frame|center|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> <br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|300px|frame|center|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> <br /> [[File:dwt1-8.jpg|300px|frame|center|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> <br /> [[File:dwt1-9.jpg|300px|frame|center|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173837 2014-05-29T03:40:05Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|500px|frame|center|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|500px|frame|center|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> <br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|500px|frame|center|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> <br /> [[File:dwt1-8.jpg|500px|frame|center|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> <br /> [[File:dwt1-9.jpg|500px|frame|center|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173836 2014-05-29T03:37:18Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> <br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in<br /> length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> <br /> [[File:dwt1-8.jpg|300px|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> <br /> [[File:dwt1-9.jpg|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173834 2014-05-29T03:34:38Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> Molecular characterization of DWT1:<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1-5.jpg|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. <br /> File:dwt1-6.jpg|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.<br /> &lt;/gallery&gt;<br /> |}<br /> Expression pattern of DWT1 transcripts and proteins:<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1-7.jpg|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in<br /> length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.<br /> File:dwt1-8.jpg|300px|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. <br /> File:dwt1-9.jpg|M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173833 2014-05-29T03:31:00Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|left|thumb|300px|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|left|thumb|300px|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> &lt;br style=&quot;clear: left&quot;/&gt;<br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|left|thumb|300px|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in<br /> length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> [[File:dwt1-8.jpg|left|thumb|300px|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> [[File:dwt1-9.jpg|left|thumb|300px| M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> &lt;br style=&quot;clear: left&quot;/&gt;<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173832 2014-05-29T03:21:49Z

<p>Liying: /* Expression */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> Molecular characterization of DWT1:<br /> [[File:dwt1-5.jpg|left|thumb|300px|A. Map-based cloning of the DWT1 gene. The chromosomal region containing DWT1 is diagrammed as the top line with molecular markers shown above the line. The number below the corresponding markers indicates the numbers of recombinants between the markers and DWT1. The BAC clones are shown as overlapping lines. B. Structure of the DWT1 gene. The mutant sequence has one nucleotide C763 deletion in the second exon. Black boxes indicate exons, white boxes indicate UTRs and lines indicate introns. The grey box shows the homeobox domain. ]]<br /> [[File:dwt1-6.jpg|left|thumb|300px|C. The plant stature of dwt1, the wild type, and complemented transgenic plants (DWT1-COM). D. The<br /> morphology of the second internodes of dwt1, wild type, and complemented transgenic plants (DWT1-COM). E–H. Nuclear localization of<br /> DWT1 protein. YFP fluorescence image (E), light view (F), PI stained image (G) and overlay of the three images (H) of Nicotiana benthamiana leaf epidermal cell transformed with the 35S:DWT1-YFP construct.]]<br /> &lt;br style=&quot;clear:both;&quot;&gt;<br /> Expression pattern of DWT1 transcripts and proteins:<br /> [[File:dwt1-7.jpg|left|thumb|300px|A. qRT-PCR analysis of DWT1 gene expression levels in the wild-type tissues including coleoptiles (36 h after seed germination), root tips, mature leaf and sheath, the second internode during elongating (1 cm in length), segments of the upper (U), middle (M), and lower (L) parts of the second internode with 3 cm in length, dormant tiller bud, panicle (less than 1 cm in<br /> length), spikelet at stage Sp8 during development of pistil [63], young embryo (10 days after fertilization), and callus with 20–days regeneration. Rice ACTIN1 (OsACTIN1) was used as a control. B. qRT-PCR analysis of DWT1 gene expression levels in young panicle of wild<br /> type.]]<br /> [[File:dwt1-8.jpg|left|thumb|300px|C–L. In situ hybridization of DWT1. Signals were detected in the primary branch meristem (E), secondary branch meristem (C, F), top portion of the panicle (G), shoot apical and radical apical of young embryo (I), and endodermis and exodermis of root tip (K). D, H, J and L were corresponding sections hybridized with the sense probe.I,II,III,IV, the first, second, third and the forth internode, respectively; pb, primary branch meristem; sb, secondary branch meristem; yl, young leave; fm, floral meristem; ifm, inflorescence meristem; exd, exodermis layer; end, endodermis layer. ]]<br /> [[File:dwt1-9.jpg|left|thumb|300px| M–R. YFP fluorescence image of the branch meristem (M–O) and the internode (P–R) in transgenic plants expressing pDWT1:DWT1-YFP. M and P are fluorescence image, N and Q are light view, O and R are overlapping of fluorescence image and light view. S. Western-blot analysis of DWT1 protein levels.]]<br /> &lt;br style=&quot;clear:both;&quot;&gt;<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-9.jpg&diff=173805 2014-05-29T02:23:48Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-8.jpg&diff=173803 2014-05-29T02:20:24Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-7.jpg&diff=173801 2014-05-29T02:18:23Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-6.jpg&diff=173800 2014-05-29T02:16:11Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-6.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-6.jpg&diff=173799 2014-05-29T02:16:03Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-6.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-6.jpg&diff=173798 2014-05-29T02:15:56Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-6.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-6.jpg&diff=173796 2014-05-29T02:15:26Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173795 2014-05-29T02:15:14Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173794 2014-05-29T02:15:12Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173793 2014-05-29T02:15:06Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173792 2014-05-29T02:14:42Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173791 2014-05-29T02:14:36Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173790 2014-05-29T02:14:24Z

<p>Liying: uploaded a new version of &amp;quot;File:Dwt1-5.jpg&amp;quot;</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-5.jpg&diff=173789 2014-05-29T02:14:07Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173781 2014-05-29T01:55:53Z

<p>Liying: /* Function */</p> <hr /> <div>DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=173780 2014-05-29T01:54:07Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=WEP&diff=173323 2014-05-27T15:43:44Z

<p>Liying: </p> <hr /> <div>==Annotated Information==<br /> ===Function===<br /> <br /> Please input expression information here<br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=WEP&diff=173322 2014-05-27T15:42:58Z

<p>Liying: Blanked the page</p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=173321 2014-05-27T15:41:59Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> [[File:千粒重基因结构.jpg|frame|center| TGW6 gene structure and mutation sites]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1 National Institute of Agrobiological Sciences, Tsukuba, Japan. <br /> <br /> 2 Graduate School of Life Science, Toyo University, Itakura, Japan. <br /> <br /> 3 Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto, Japan.<br /> <br /> ==References==<br /> 1. Ken Ishimaru;Naoki Hirotsu;Yuka Madoka;Naomi Murakami;Nao Hara;Haruko Onodera;Takayuki Kashiwagi;Kazuhiro Ujiie;Bun-ichi Shimizu;Atsuko Onishi;Hisashi Miyagawa;Etsuko Katoh<br /> Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield<br /> Nature Genetics, 2013, 45(6): 707-711<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=173318 2014-05-27T15:35:54Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> [[File:千粒重基因.jpg|frame|center| TGW6 gene structure and mutation sites]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1 National Institute of Agrobiological Sciences, Tsukuba, Japan. <br /> <br /> 2 Graduate School of Life Science, Toyo University, Itakura, Japan. <br /> <br /> 3 Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto, Japan.<br /> <br /> ==References==<br /> 1. Ken Ishimaru;Naoki Hirotsu;Yuka Madoka;Naomi Murakami;Nao Hara;Haruko Onodera;Takayuki Kashiwagi;Kazuhiro Ujiie;Bun-ichi Shimizu;Atsuko Onishi;Hisashi Miyagawa;Etsuko Katoh<br /> Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield<br /> Nature Genetics, 2013, 45(6): 707-711<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:%E5%8D%83%E7%B2%92%E9%87%8D%E5%9F%BA%E5%9B%A0%E7%BB%93%E6%9E%84.jpg&diff=173317 2014-05-27T15:25:21Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=173310 2014-05-27T15:16:44Z

<p>Liying: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1 National Institute of Agrobiological Sciences, Tsukuba, Japan. <br /> <br /> 2 Graduate School of Life Science, Toyo University, Itakura, Japan. <br /> <br /> 3 Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto, Japan.<br /> <br /> ==References==<br /> 1. Ken Ishimaru;Naoki Hirotsu;Yuka Madoka;Naomi Murakami;Nao Hara;Haruko Onodera;Takayuki Kashiwagi;Kazuhiro Ujiie;Bun-ichi Shimizu;Atsuko Onishi;Hisashi Miyagawa;Etsuko Katoh<br /> Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield<br /> Nature Genetics, 2013, 45(6): 707-711<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=173309 2014-05-27T15:15:28Z

<p>Liying: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1 National Institute of Agrobiological Sciences, Tsukuba, Japan. <br /> <br /> 2 Graduate School of Life Science, Toyo University, Itakura, Japan. <br /> <br /> 3 Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto, Japan.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=173308 2014-05-27T15:15:12Z

<p>Liying: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> 1 National Institute of Agrobiological Sciences, Tsukuba, Japan. <br /> 2 Graduate School of Life Science, Toyo University, Itakura, Japan. <br /> 3 Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto, Japan.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172836 2014-05-26T08:10:16Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172833 2014-05-26T08:08:59Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> {| align=center border=1<br /> |- <br /> | &lt;gallery&gt;<br /> File:dwt1.jpg|128px|thumb|frame|right|Morphology of the wild type and dwt1 plants after heading<br /> File:dwt1-2.jpg|128px|thumb|frame|right|Mature main shoots and tillers with leaves removed from the culm<br /> File:dwt1-3.jpg|128px|thumb|frame|right|Close-up view of the internodes after heading stage<br /> File:dwt1-4.jpg|128px|thumb|frame|right|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading<br /> &lt;/gallery&gt;<br /> |}<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172829 2014-05-26T08:06:54Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|128px|thumb|frame|right|Morphology of the wild type and dwt1 plants after heading]]<br /> [[File:dwt1-2.jpg|128px|thumb|frame|right|Mature main shoots and tillers with leaves removed from the culm]]<br /> [[File:dwt1-3.jpg|128px|thumb|frame|right|Close-up view of the internodes after heading stage]]<br /> [[File:dwt1-4.jpg|128px|thumb|frame|right|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading]]<br /> &lt;br style=&quot;clear: right&quot;/&gt;<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-4.jpg&diff=172828 2014-05-26T08:05:31Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-3.jpg&diff=172826 2014-05-26T08:05:15Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-2.jpg&diff=172825 2014-05-26T08:05:01Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172815 2014-05-26T08:00:24Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|128px|thumb|frame|right|Morphology of the wild type and dwt1 plants after heading]]<br /> [[File:dwt1-2.jpg|128px|thumb|frame|right|Mature main shoots and tillers with leaves removed from the culm]]<br /> [[File:dwt1-3.jpg|128px|thumb|frame|right|Close-up view of the internodes after heading stage]]<br /> [[File:dwt1-4.jpg|128px|thumb|frame|right|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading]]<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172809 2014-05-26T07:58:02Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|128px|thumb|frame|right|Morphology of the wild type and dwt1 plants after heading]]<br /> [[File:dwt1-2.jpg|128px|thumb|frame|right|Mature main shoots and tillers with leaves removed from the culm]]<br /> [[File:dwt1-3.jpg|128px|thumb|frame|right|Close-up view of the internodes after heading stage]]<br /> [[File:dwt1-4.jpg|128px|thumb|frame|right|Morphology of panicles from the main shoot (MS) and tillers (TS) of wild type (WT) and dwt1 after heading]]<br /> &lt;br style=&quot;clear: right&quot;/&gt;<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-4.png&diff=172796 2014-05-26T07:46:13Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-3.png&diff=172792 2014-05-26T07:44:43Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1-2.png&diff=172783 2014-05-26T07:38:55Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172778 2014-05-26T07:32:02Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|frame|right|Morphology of the wild type and dwt1 plants after heading]]<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172777 2014-05-26T07:30:42Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg|right|Morphology of the wild type and dwt1 plants after heading]]<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172775 2014-05-26T07:29:11Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> [[File:dwt1.jpg]]<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Dwt1.jpg&diff=172774 2014-05-26T07:26:47Z

<p>Liying: </p> <hr /> <div></div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=172766 2014-05-26T07:18:49Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0623700&diff=172765 2014-05-26T07:18:11Z

<p>Liying: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> THOUSAND-GRAIN WEIGHT 6(TGW6) from the Indian landrace rice Kasalath encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length. Most notably, loss of function of the Kasalath allele enhances grain weight through pleiotropic effects on source organs and leads to significant yield increases. TGW6 may be useful for further improvements in yield characteristics in most cultivars.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==</div>

Liying https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0667400&diff=172747 2014-05-26T06:50:20Z

<p>Liying: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> <br /> DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa).<br /> DWT1 mutant has no obvious morphological difference with wild-type plant at the initial vegetative stage. However, DWT1 developes dwarfed tillers with the main shoot having nearly normal height during the reproductive stage. DWT1 tillers have shorter internodes with fewer and un-elongated cells, indicating that DWT1 affects cell division and cell elongation. DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9.<br /> <br /> ===Expression===<br /> The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling have been revealed in DWT1 shorter internodes. Previous reports indicated no effect of these hormonal pathways on the coordination between the tiller and the main shoot growth, but latest resoults reveals that the DWT1 activity is directly or indirectly associated with GA signaling in the internode elongation.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> <br /> 1 State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China <br /> <br /> 2 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China<br /> <br /> 3 Graduate University of the Chinese Academy of Sciences, Beijing, China<br /> <br /> 4 Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America<br /> <br /> ==References==<br /> 1. Wenfei Wang;Gang Li;Jun Zhao;Huangwei Chu;Wenhui Lin;Dabing Zhang;Zhiyong Wang;Wanqi Liang<br /> DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice<br /> PLoS Genetics, 2014, 10(3): e1004154<br /> 2. Wenfei Wang;Huangwei Chu;Dabing Zhang;Wanqi Liang<br /> Fine Mapping and Analysis of DWARF TILLER1 in Controlling Rice Architecture<br /> Journal of genetics and genomics, 2013, 40(9): 493-495<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os01g0667400|<br /> Description = Conserved hypothetical protein|<br /> Version = NM_001050343.1 GI:115439056 GeneID:4326320|<br /> Length = 1538 bp|<br /> Definition = Oryza sativa Japonica Group Os01g0667400, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|<br /> AP = Chromosome 1:29046116..29047653|<br /> CDS = 29046806..29047498|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008394:29046116..29047653<br /> source=RiceChromosome01<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MSVTTAMDLLSPLAAACHQQMLYQGQPLESPPAPAPKVHGIVPH DEPVFLQWPQSPCLSAVDLGAAILGGQYMHLPVPAPQPPSSPGAAGMFWGLCNDVQAP NNTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRPEEAHDVDATKHGLLQYG FGITTPQVHVDVTSSAAGVLPPVPSSPSPPNAAVTVASVAATASLTDFAASAISAGAV ANNQFQGTLFVL&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;156..848#tcacgccgccgccaccaatcctcccggcgccccagccggtgcagccgcagcagcagcttgtctcgcctgtggcggcgcctacctcgtcgtcgtcttcctcctccgaccgttcgtccgggtccagcaagcctgcgagggctacgtcgacgcaggcgatgtccgtgacgacggccatggacctgctctcgccgctcgccgcggcgtgccaccagcagatgctctatcaaggccagccactggagtcgccgccggcgcctgctcccaaagtgcacggcatcgtgccacacgacgagccggtcttcctgcagtggccgcagagcccctgcctgtcggccgtcgacctcggcgccgccattcttggcggccagtacatgcacctgccggtgcccgctccgcagccaccgtcgtcgccgggcgcggcgggcatgttctgggggctctgcaacgacgtgcaagcgccaaacaacaccggccacaagagctgcgcctggagcgccgggctcggccagcactggtgcggctccgccgatcagctcggcctcggcaagagcagcgcggcgtcgatcgccaccgtgtctaggccggaggaggcgcacgacgtcgacgccacgaagcacggtctgctacagtacggctttggcatcaccacgccgcaagtgcacgtggacgttacctcctcggctgctggcgttctgcctcctgttccgtcctcgccgtcgccgccgaacgccgccgtcaccgtcgcgagcgtggccgccaccgctagcctgactgattttgctgcaagtgctatatctgctggcgccgtcgctaacaatcagtttcaaggtactctttttgttctttgatatgaagaatttaattaactggtcaaatcatgaatcaccaccatttagctagattatctgttggcattttttcccctttgttcagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgtcacttcaggggagtctaacttctcttgtagtgttgtcctcaatttcagtttcgtttggatttaactacaaaatgacaaattttttactgaaagaagaattgtatatgcatgaaattgtactgtactagtttcctttagggcccaatccaaaccagccgttctcaaacaagggccctgtgcccaggcatggcaatgataataagacaagtttaggccatgtaaaatccttttcttttgtgtgtctgtacaatcttatcacttcaatgcagatagactttccagtaaagatgaagaaatttgtcattttgtaagcatgtagatttagacaagaccaaaatttgtgagctgttctccatcaggtcaaattgagtaggtttcttgatgggatgttacaaatatgcgaactactagtactactgctatttcatggtgatggggaacatcatgtcatcgcatgtagatgcattcagctcccacatgctccctccatccaaaaaaaagacaaaccctggtttgcatgtgcaacgtttgaccgtccgtcgtattt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050343.1 RefSeq:Os01g0667400]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 1]]<br /> [[Category:Chromosome 1]]</div>

Liying