RiceWiki - User contributions [en]

Os08g0535200

2014-05-25T14:25:38Z

QfangYang:

Xa13 are Rice recessive resistance genes controlling of rice disease resistance and the reproductive growth .
==Annotated Information==
===Function===
Xa13 has a recessive resistance to bacterial leaf blight. To inhibit the expression of xa13 by RNA interference, leads to enhancementof xa13 mediated resistance, it suggests the lack of xa13 dominant allele for dialogue leaf blight resistance is a must. If determined dominant allele identified in Xa13 is inhibited, the strain PX099 resistance would be enhanced,but at the same time, it also can cause rice male sterility (pollen), reduce the seed setting rate.
===Localization===
Xa13 is Located in the chromosome 8.
===Expression===
Xa13 is a recessive resistance to bacterial leaf blight gene, positioning two candidate genes, a kind of stretch is vegetable protein gene homologous genes rich in amino acid ,the other is a nodule gene MtN3 homologous genes.the amount of Xa13 expression in the leaf is very low, but in the ear and anther expression level is very high.Rice xa13 gene is Os - 8 N3 alleles, Os - 8 N3 element (NODULIN3, N3) root nodules and belongs to one of the members of the family, Os - 8 n3 is a pathogen of bacterial leaf blight disease genes.
The resistance of recessive alleles can be harmed by a class III effect molecular AvrXa7, PthXo2 or PthXo3 ,which produced by pathogen, these effects molecular all belong to class members of the family of transcription activation son son (TAL) effect. AvrXa7 PthXo3 can activate the expression of the N3 and another member of the family genes Os - 11 N3 . Os - 11 n3 insertion mutation or regulation of RNA silence,the specific disease susceptibility of those disease species who rely on AvrXa7 and PthXo3 would lose. AvrXa7 drive the expression of Os - 11 n3 ,and repetitive structure domain of TAL effect molecular can be choosed to overcome the explicit and implicit two forms of rice bacterial leaf blight resistance.

===Evolution===
1.The discovery of xa13 and its resistance to bacterial blight of rice,then mapping it, Identificating Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India.
2.The researches of mechanism of action and Characterization,Now TAL effect specific combination model and TAL effect child repetitive structure domain by choice are known,there are two proteins:Os-8N3 and Os-11N3 ,they are coding close relatives,and the functions are studied.
3.However ,how to put the promoting effect of pathogen infection child as targets by host is unknown
4.XA13 participated in the redistribution of the copper.

You can also add sub-section(s) at will.

==Labs working on this gene==
National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University.
Plant Pathology, Kansas State University.
Genetics, Development, and Cell Biology, Iowa State University

==References==
1. Changyan Li;Jing Wei;Yongjun Lin;Hao Chen
Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Plant Cell Reports, 2012, 31(5): 851-862
2. Ting Yuan;Xianghua Li;Jinghua Xiao;Shiping Wang
Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13
Molecular Plant, 2011, 4(2): 300-309
3. Ginny Antony;Junhui Zhou;Sheng Huang;Ting Lib;Bo Liu;Frank White;Bing Yang
Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
The Plant Cell, 2010, 22(11): 3864-3876
4. Meng Yuan;Zhaohui Chu;Xianghua Li;Caiguo Xu;Shiping Wang
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
The Plant Cell, 2010, 22(9): 3164-3176
5. Zhaohui Chu;Meng Yuan;Jialing Yao;Xiaojia Ge;Bin Yuan;Caiguo Xu;Xianghua Li;Binying Fu;Zhikang Li;Jeffrey L. Bennetzen;Qifa Zhang and Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
GENES & DEVELOPMENT, 2006, 20(10): 1250-1255
6. Zhaohui Chu;Binying Fu;Hong Yang;Caiguo Xu;Zhikang Li;A. Sanchez;Y. J. Park;J. L. Bennetzen;Qifa Zhang and Shiping Wang
Targeting xa13, a recessive gene for bacterial blight resistance in rice
Theoretical and Applied Genetics, 2006, 112(3): 455-461
7. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India
Phytopathology, 2001, 85(5): 506-512
8. A. C. Sanchez;L. L. Ilag;D. Yang;D. S. Brar;F. Ausubel;G. S. Khush;M. Yano;T. Sasaki;Z. Li;N. Huang
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice
Theoretical and Applied Genetics, 1999, 98(6-7): 1022-1028
9. G. Zhang;E. R. Angeles;M. L. P. Abenes;G. S. Khush and N. Huang
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice
Theoretical and Applied Genetics, 1996, 93(1-2): 65-70
10. T. OGAWA, Luo LIN, R. E. TABIEN and G. S. KHUSH
A new recessive gene for resistance to bacterial blight of rice
Rice Genetics Newsletters, 1987, 4(0): 98-100

==Structured Information==
{{JaponicaGene|
GeneName = Os08g0535200|
Description = Similar to MtN3-like protein|
Version = NM_001068889.1 GI:115477516 GeneID:4346153|
Length = 2843 bp|
Definition = Oryza sativa Japonica Group Os08g0535200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:26813957..26816799|
CDS = 26814378..26814713,26814806..26814925,26815020..26815392,26815491..26815527,26816571..26816628 |
GCID = <gbrowseImage1>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggaaacatcatctccttcctggtgttccttgcaccagtggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatgtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtga</cdnaseq>|
AA = <aaseq>MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKST GGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRAR LRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVI KTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRK PRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAA EQAADGVAAAAAADKELLQNKPEVIEITAAV</aaseq>|
DNA = <dnaseqindica>2087..2422#1875..1994#1408..1780#1273..1309#172..229#acacatgcagttgtagtagcacttaagccttcctctctagctagcatctcttgtgtcaggaagttggaagggatttctggctagtttctagctggtgtctcctctcctcttcctaaccttctcactgattaacaccttagagttagttaataaccttcatcaccagtagcaatggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggtaaagcatgcaaccaatgcataatgctcaaacttaatttcatcatcatcatcatcatcatcatcttcacagccatgatcatccatggacaaatgcaactgaagatcattttagttttcatatgctaatgatcaaattcaggttaattgctgtttaatttctccatacactagttgttgtctgcaccattgcattgtgcacagcacacacacgcttttgatgcttctaggaatgcatatctgttcagcagttcacacagtgcagcagggcaatgttgttaaaaaatcttctccttttttttatgtccttgtgttcttgagctttctgtctccattgatctgcttttttcttgtttacaagtgatgggcacaagtcacttccctagcttcagctcatgcatggagcaggaatctcacttcaaaagacctagcactttttctctcttcacctttttgcctcaacacatgcccagtttctggccacacaaacataaacacatatactatctagctgcataattgcatcaaattaagcagggtttgtttcagctaggaattccacacataggtcattaattagtattgccaactttctcaacatgcatgcactctagtactctacctaagctagctcccagattagcttctgctaatttaattccgatttcttgaaatggagatcggttgagcagtgagggaggcgtgcatctgctcctcttcgtcgctgtcactaaacaaaagcagagctagctaggtggtaacaaactgatttgatttttgtcagtaaacaaaaatgaccaattaatgacccatcaaccagtttcaattctcgatcctaacctagctaacatctctgaaactctgaaagaacattactatcttactgacagtgtatatatatgcaaactaaaattttattttattttatcctaacctagctaacatatctgcatccgtgtgaaccagctgaaactctgaaagaatgttactccactgatcatatattaattaacgatgtcgttttctgtcttgtttcttttgcaggaaacatcatctccttcctggtgttccttgcaccagtgtgagtactccattcctactgtcaccatcaaaatctcgagagaaacatctgaatatctctgacgacgaactggaatttatatctctgaaaaattgcagggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcgtaagcttaagctctctaccccccctctacatttcactgacatcaattgcattatgtagctgagcatttctgttgatgatgatgatgcttgcagttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatggtgagctcagctgccgccattgatagagctgctcgacgacgccattgttgtgaattgttttgagctgacttgcatttcttggtgcgatgcagtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtgacgacgactgatctcgacgacgacagattctcgctactgatgaagaagacgacgacgatggccggatcgatgacggacagaatttagcagtgtggattactaccgaactttaattagttggttaattattggattacaatgtggtaagagtgtgtcattagcagctagttaacttacttaaattaattatcttgttcagtcagtcagtcagtcagtcagtcagtcagctttgagtgagtgagtgagtgatctcgacgtagtttgctggttggtgtaataagaaaaaggcgatctactagtagtctactagctagtacgcatgcatgtgtgtgtgctctacttaccgtgttgcaatctcatctctttgtacttacaactcagaaatcaatggaagattgtgacaggtattattagtagttact</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068889.1 RefSeq:Os08g0535200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os08g0535200

2014-05-25T14:18:02Z

QfangYang:

Xa13 are Rice recessive resistance genes controlling of rice disease resistance and the reproductive growth .
==Annotated Information==
===Function===
Xa13 has a recessive resistance to bacterial leaf blight. To inhibit the expression of xa13 by RNA interference, leads to enhancementof xa13 mediated resistance, it suggests the lack of xa13 dominant allele for dialogue leaf blight resistance is a must. If determined dominant allele identified in Xa13 is inhibited, the strain PX099 resistance would be enhanced,but at the same time, it also can cause rice male sterility (pollen), reduce the seed setting rate.
===Localization===
Xa13 is Located in the chromosome 8.
===Expression===
Xa13 is a recessive resistance to bacterial leaf blight gene, positioning two candidate genes, a kind of stretch is vegetable protein gene homologous genes rich in amino acid ,the other is a nodule gene MtN3 homologous genes.the amount of Xa13 expression in the leaf is very low, but in the ear and anther expression level is very high.Rice xa13 gene is Os - 8 N3 alleles, Os - 8 N3 element (NODULIN3, N3) root nodules and belongs to one of the members of the family, Os - 8 n3 is a pathogen of bacterial leaf blight disease genes.
The resistance of recessive alleles can be harmed by a class III effect molecular AvrXa7, PthXo2 or PthXo3 ,which produced by pathogen, these effects molecular all belong to class members of the family of transcription activation son son (TAL) effect. AvrXa7 PthXo3 can activate the expression of the N3 and another member of the family genes Os - 11 N3 . Os - 11 n3 insertion mutation or regulation of RNA silence,the specific disease susceptibility of those disease species who rely on AvrXa7 and PthXo3 would lose. AvrXa7 drive the expression of Os - 11 n3 ,and repetitive structure domain of TAL effect molecular can be choosed to overcome the explicit and implicit two forms of rice bacterial leaf blight resistance.

===Evolution===
1.The discovery of xa13 and its resistance to bacterial blight of rice,then mapping it, Identificating Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India.
2.The researches of mechanism of action and Characterization,Now TAL effect specific combination model and TAL effect child repetitive structure domain by choice are known,there are two proteins:Os-8N3 and Os-11N3 ,they are coding close relatives,and the functions are studied.
3.However ,how to put the promoting effect of pathogen infection child as targets by host is unknown
4.XA13 participated in the redistribution of the copper.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
1. Changyan Li;Jing Wei;Yongjun Lin;Hao Chen
Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Plant Cell Reports, 2012, 31(5): 851-862
2. Ting Yuan;Xianghua Li;Jinghua Xiao;Shiping Wang
Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13
Molecular Plant, 2011, 4(2): 300-309
3. Ginny Antony;Junhui Zhou;Sheng Huang;Ting Lib;Bo Liu;Frank White;Bing Yang
Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
The Plant Cell, 2010, 22(11): 3864-3876
4. Meng Yuan;Zhaohui Chu;Xianghua Li;Caiguo Xu;Shiping Wang
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
The Plant Cell, 2010, 22(9): 3164-3176
5. Zhaohui Chu;Meng Yuan;Jialing Yao;Xiaojia Ge;Bin Yuan;Caiguo Xu;Xianghua Li;Binying Fu;Zhikang Li;Jeffrey L. Bennetzen;Qifa Zhang and Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
GENES & DEVELOPMENT, 2006, 20(10): 1250-1255
6. Zhaohui Chu;Binying Fu;Hong Yang;Caiguo Xu;Zhikang Li;A. Sanchez;Y. J. Park;J. L. Bennetzen;Qifa Zhang and Shiping Wang
Targeting xa13, a recessive gene for bacterial blight resistance in rice
Theoretical and Applied Genetics, 2006, 112(3): 455-461
7. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India
Phytopathology, 2001, 85(5): 506-512
8. A. C. Sanchez;L. L. Ilag;D. Yang;D. S. Brar;F. Ausubel;G. S. Khush;M. Yano;T. Sasaki;Z. Li;N. Huang
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice
Theoretical and Applied Genetics, 1999, 98(6-7): 1022-1028
9. G. Zhang;E. R. Angeles;M. L. P. Abenes;G. S. Khush and N. Huang
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice
Theoretical and Applied Genetics, 1996, 93(1-2): 65-70
10. T. OGAWA, Luo LIN, R. E. TABIEN and G. S. KHUSH
A new recessive gene for resistance to bacterial blight of rice
Rice Genetics Newsletters, 1987, 4(0): 98-100

==Structured Information==
{{JaponicaGene|
GeneName = Os08g0535200|
Description = Similar to MtN3-like protein|
Version = NM_001068889.1 GI:115477516 GeneID:4346153|
Length = 2843 bp|
Definition = Oryza sativa Japonica Group Os08g0535200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:26813957..26816799|
CDS = 26814378..26814713,26814806..26814925,26815020..26815392,26815491..26815527,26816571..26816628 |
GCID = <gbrowseImage1>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggaaacatcatctccttcctggtgttccttgcaccagtggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatgtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtga</cdnaseq>|
AA = <aaseq>MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKST GGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRAR LRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVI KTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRK PRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAA EQAADGVAAAAAADKELLQNKPEVIEITAAV</aaseq>|
DNA = <dnaseqindica>2087..2422#1875..1994#1408..1780#1273..1309#172..229#acacatgcagttgtagtagcacttaagccttcctctctagctagcatctcttgtgtcaggaagttggaagggatttctggctagtttctagctggtgtctcctctcctcttcctaaccttctcactgattaacaccttagagttagttaataaccttcatcaccagtagcaatggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggtaaagcatgcaaccaatgcataatgctcaaacttaatttcatcatcatcatcatcatcatcatcttcacagccatgatcatccatggacaaatgcaactgaagatcattttagttttcatatgctaatgatcaaattcaggttaattgctgtttaatttctccatacactagttgttgtctgcaccattgcattgtgcacagcacacacacgcttttgatgcttctaggaatgcatatctgttcagcagttcacacagtgcagcagggcaatgttgttaaaaaatcttctccttttttttatgtccttgtgttcttgagctttctgtctccattgatctgcttttttcttgtttacaagtgatgggcacaagtcacttccctagcttcagctcatgcatggagcaggaatctcacttcaaaagacctagcactttttctctcttcacctttttgcctcaacacatgcccagtttctggccacacaaacataaacacatatactatctagctgcataattgcatcaaattaagcagggtttgtttcagctaggaattccacacataggtcattaattagtattgccaactttctcaacatgcatgcactctagtactctacctaagctagctcccagattagcttctgctaatttaattccgatttcttgaaatggagatcggttgagcagtgagggaggcgtgcatctgctcctcttcgtcgctgtcactaaacaaaagcagagctagctaggtggtaacaaactgatttgatttttgtcagtaaacaaaaatgaccaattaatgacccatcaaccagtttcaattctcgatcctaacctagctaacatctctgaaactctgaaagaacattactatcttactgacagtgtatatatatgcaaactaaaattttattttattttatcctaacctagctaacatatctgcatccgtgtgaaccagctgaaactctgaaagaatgttactccactgatcatatattaattaacgatgtcgttttctgtcttgtttcttttgcaggaaacatcatctccttcctggtgttccttgcaccagtgtgagtactccattcctactgtcaccatcaaaatctcgagagaaacatctgaatatctctgacgacgaactggaatttatatctctgaaaaattgcagggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcgtaagcttaagctctctaccccccctctacatttcactgacatcaattgcattatgtagctgagcatttctgttgatgatgatgatgcttgcagttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatggtgagctcagctgccgccattgatagagctgctcgacgacgccattgttgtgaattgttttgagctgacttgcatttcttggtgcgatgcagtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtgacgacgactgatctcgacgacgacagattctcgctactgatgaagaagacgacgacgatggccggatcgatgacggacagaatttagcagtgtggattactaccgaactttaattagttggttaattattggattacaatgtggtaagagtgtgtcattagcagctagttaacttacttaaattaattatcttgttcagtcagtcagtcagtcagtcagtcagtcagctttgagtgagtgagtgagtgatctcgacgtagtttgctggttggtgtaataagaaaaaggcgatctactagtagtctactagctagtacgcatgcatgtgtgtgtgctctacttaccgtgttgcaatctcatctctttgtacttacaactcagaaatcaatggaagattgtgacaggtattattagtagttact</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068889.1 RefSeq:Os08g0535200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os08g0535200

2014-05-25T13:45:43Z

QfangYang:

Xa13 are Rice recessive resistance genes controlling of rice disease resistance and the reproductive growth .
==Annotated Information==
===Function===
Xa13 is a recessive resistance to bacterial leaf blight gene.Through the expression of RNA interference suppression xa13, to enhance the resistance of xa13 mediated, suggests xa13 dominant allele lack of dialogue leaf blight resistance is a must. It is worth noting that from cultivars determined dominant allele identified in Xa13, if inhibition of its expression, the enhancement of strain PX099 resistance at the same time, also can cause rice male sterility (pollen), reduce the seed setting rate.
===Localization===
Xa13 is Located in the chromosome 8.
===Expression===
Rice xa13 gene is Os - 8 N3 alleles, Os - 8 N3 element (NODULIN3, N3) root nodules and belongs to one of the members of the family, Os - 8 n3 is a pathogen of bacterial leaf blight disease genes, the resistance of recessive alleles can be those who have a class III effect AvrXa7, PthXo2 or PthXo3 pathogen small kind of damage, the effects of child all belong to class members of the family of transcription activation son son (TAL) effect. AvrXa7 PthXo3 can activate the N3 and another member of the family genes Os - 11 N3 expression. Os - 11 n3 insertion mutation or mediated by RNA silence, for those who rely on AvrXa7 and PthXo3 disease specific disease of small kind of loss. Results further indicated that AvrXa7 drive Os - 11 n3 expression, and AvrXa7 can with Os - 11 n3 promoter specific combination of component interactions.

===Evolution===
1.The discovery of xa13 and its resistance to bacterial blight of rice,then mapping it, Identificating Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India.
2.The researches of mechanism of action and Characterization,Now TAL effect specific combination model and TAL effect child repetitive structure domain by choice are known,there are two proteins:Os-8N3 and Os-11N3 ,they are coding close relatives,and the functions are studied.
3.However ,how to put the promoting effect of pathogen infection child as targets by host is unknown
4.XA13 participated in the redistribution of the copper.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
1. Changyan Li;Jing Wei;Yongjun Lin;Hao Chen
Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Plant Cell Reports, 2012, 31(5): 851-862
2. Ting Yuan;Xianghua Li;Jinghua Xiao;Shiping Wang
Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13
Molecular Plant, 2011, 4(2): 300-309
3. Ginny Antony;Junhui Zhou;Sheng Huang;Ting Lib;Bo Liu;Frank White;Bing Yang
Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
The Plant Cell, 2010, 22(11): 3864-3876
4. Meng Yuan;Zhaohui Chu;Xianghua Li;Caiguo Xu;Shiping Wang
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
The Plant Cell, 2010, 22(9): 3164-3176
5. Zhaohui Chu;Meng Yuan;Jialing Yao;Xiaojia Ge;Bin Yuan;Caiguo Xu;Xianghua Li;Binying Fu;Zhikang Li;Jeffrey L. Bennetzen;Qifa Zhang and Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
GENES & DEVELOPMENT, 2006, 20(10): 1250-1255
6. Zhaohui Chu;Binying Fu;Hong Yang;Caiguo Xu;Zhikang Li;A. Sanchez;Y. J. Park;J. L. Bennetzen;Qifa Zhang and Shiping Wang
Targeting xa13, a recessive gene for bacterial blight resistance in rice
Theoretical and Applied Genetics, 2006, 112(3): 455-461
7. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India
Phytopathology, 2001, 85(5): 506-512
8. A. C. Sanchez;L. L. Ilag;D. Yang;D. S. Brar;F. Ausubel;G. S. Khush;M. Yano;T. Sasaki;Z. Li;N. Huang
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice
Theoretical and Applied Genetics, 1999, 98(6-7): 1022-1028
9. G. Zhang;E. R. Angeles;M. L. P. Abenes;G. S. Khush and N. Huang
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice
Theoretical and Applied Genetics, 1996, 93(1-2): 65-70
10. T. OGAWA, Luo LIN, R. E. TABIEN and G. S. KHUSH
A new recessive gene for resistance to bacterial blight of rice
Rice Genetics Newsletters, 1987, 4(0): 98-100

==Structured Information==
{{JaponicaGene|
GeneName = Os08g0535200|
Description = Similar to MtN3-like protein|
Version = NM_001068889.1 GI:115477516 GeneID:4346153|
Length = 2843 bp|
Definition = Oryza sativa Japonica Group Os08g0535200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:26813957..26816799|
CDS = 26814378..26814713,26814806..26814925,26815020..26815392,26815491..26815527,26816571..26816628 |
GCID = <gbrowseImage1>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggaaacatcatctccttcctggtgttccttgcaccagtggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatgtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtga</cdnaseq>|
AA = <aaseq>MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKST GGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRAR LRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVI KTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRK PRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAA EQAADGVAAAAAADKELLQNKPEVIEITAAV</aaseq>|
DNA = <dnaseqindica>2087..2422#1875..1994#1408..1780#1273..1309#172..229#acacatgcagttgtagtagcacttaagccttcctctctagctagcatctcttgtgtcaggaagttggaagggatttctggctagtttctagctggtgtctcctctcctcttcctaaccttctcactgattaacaccttagagttagttaataaccttcatcaccagtagcaatggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggtaaagcatgcaaccaatgcataatgctcaaacttaatttcatcatcatcatcatcatcatcatcttcacagccatgatcatccatggacaaatgcaactgaagatcattttagttttcatatgctaatgatcaaattcaggttaattgctgtttaatttctccatacactagttgttgtctgcaccattgcattgtgcacagcacacacacgcttttgatgcttctaggaatgcatatctgttcagcagttcacacagtgcagcagggcaatgttgttaaaaaatcttctccttttttttatgtccttgtgttcttgagctttctgtctccattgatctgcttttttcttgtttacaagtgatgggcacaagtcacttccctagcttcagctcatgcatggagcaggaatctcacttcaaaagacctagcactttttctctcttcacctttttgcctcaacacatgcccagtttctggccacacaaacataaacacatatactatctagctgcataattgcatcaaattaagcagggtttgtttcagctaggaattccacacataggtcattaattagtattgccaactttctcaacatgcatgcactctagtactctacctaagctagctcccagattagcttctgctaatttaattccgatttcttgaaatggagatcggttgagcagtgagggaggcgtgcatctgctcctcttcgtcgctgtcactaaacaaaagcagagctagctaggtggtaacaaactgatttgatttttgtcagtaaacaaaaatgaccaattaatgacccatcaaccagtttcaattctcgatcctaacctagctaacatctctgaaactctgaaagaacattactatcttactgacagtgtatatatatgcaaactaaaattttattttattttatcctaacctagctaacatatctgcatccgtgtgaaccagctgaaactctgaaagaatgttactccactgatcatatattaattaacgatgtcgttttctgtcttgtttcttttgcaggaaacatcatctccttcctggtgttccttgcaccagtgtgagtactccattcctactgtcaccatcaaaatctcgagagaaacatctgaatatctctgacgacgaactggaatttatatctctgaaaaattgcagggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcgtaagcttaagctctctaccccccctctacatttcactgacatcaattgcattatgtagctgagcatttctgttgatgatgatgatgcttgcagttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatggtgagctcagctgccgccattgatagagctgctcgacgacgccattgttgtgaattgttttgagctgacttgcatttcttggtgcgatgcagtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtgacgacgactgatctcgacgacgacagattctcgctactgatgaagaagacgacgacgatggccggatcgatgacggacagaatttagcagtgtggattactaccgaactttaattagttggttaattattggattacaatgtggtaagagtgtgtcattagcagctagttaacttacttaaattaattatcttgttcagtcagtcagtcagtcagtcagtcagtcagctttgagtgagtgagtgagtgatctcgacgtagtttgctggttggtgtaataagaaaaaggcgatctactagtagtctactagctagtacgcatgcatgtgtgtgtgctctacttaccgtgttgcaatctcatctctttgtacttacaactcagaaatcaatggaagattgtgacaggtattattagtagttact</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068889.1 RefSeq:Os08g0535200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os07g0261200

2014-05-25T12:57:25Z

QfangYang: Created page with "Ghd7 is a gene controlling rice grain number per panicle,plant height,heading stage,and the main effect of QTL. == Function == In long sunshine condition, the enhanced expres..."

Ghd7 is a gene controlling rice grain number per panicle,plant height,heading stage,and the main effect of QTL.

== Function ==
In long sunshine condition, the enhanced expression of Ghd7 could delay the earing, increase the plant height and grain number per panicle, and the natural mutant with weaken function can grow to temperate and even colder regions. Ghd7, therefore, has a very important role for an potential increase and adaptability in global rice yield .
PhyA alone or phyB and phyC work together can induce Ghd7 mRNA accumulation, and phyB alone can reduce the Ghd7 mRNA level to some degree. In addition phyB and phyA can influence the actiity of the Ghd7 and Hd1 respectively.
Hd2 and Hd16, Hd2 and genetic interactions between Ghd7. Hd2 and its genetic interactions has a very important role for heading stage by controlling the condition of long sunshine.

== Localization ==
Ghd7 is located in rice chromosome 7 between markers R1440 and C1023; Further,percisely it is located between RM5436 and RM2256 range ,the length of which is 79 KB

== Expression ==
Ghd7 cDNA of Minghui 63 is 1013 bp, encoding a nucleoprotein composed of 257 amino acid , the product is protein structure,ie,a CCT (CO, CO - LIKE the and TIMING OF CAB1) , and the CCTS OF arabidopsis CO protein domain has a lot OF similarities, but differently. it has no obvious zinc finger protein structure, and these two protein homologous relationship is not too big.

==Evolution==

== References ==

1. Xiaoyu Weng;Lei Wang;Jia Wang;Yong Hu;Hao Du;Caiguo Xu;Yongzhong Xing;Xianghua Li;Jinghua Xiao;Qifa Zhang
Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response
Plant Physiology, 2014, 164(2): 735-747
2. Li Lu;Wenhao Yan;Weiya Xue;Di Shao;Yongzhong Xing
Evolution and Association Analysis of Ghd7 in Rice
PLoS ONE, 2012, 7(5): e34021
3. Asami Osugi;Hironori Itoh;Kyoko Ikeda-Kawakatsu;Makoto Takano;Takeshi Izawa
Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice
Plant Physiology, 2011, 157(3): 1128-1137
4. Taeko Shibaya;Yasunori Nonoue;Nozomi Ono;Utako Yamanouchi;Kiyosumi Hori;Masahiro Yano
Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions
Theoretical and Applied Genetics, 2011, 123(7): 1133-1143
5. Weiya Xue;Yongzhong Xing;Xiaoyu Weng;Yu Zhao;Weijiang Tang;Lei Wang;Hongju Zhou;Sibin Yu;Caiguo Xu;Xianghua Li & Qifa Zhang
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
Nature Genetics, 2008, 40(6): 761-767

== Structured Information ==

Os08g0535200

2014-05-25T09:39:41Z

QfangYang:

Xa13 is a gene controlling of rice disease resistance genes and the reproductive growth of rice.
==Annotated Information==
===Function===
Xa13 is a recessive resistance to bacterial leaf blight gene.Through the expression of RNA interference suppression xa13, to enhance the resistance of xa13 mediated, suggests xa13 dominant allele lack of dialogue leaf blight resistance is a must. It is worth noting that from cultivars determined dominant allele identified in Xa13, if inhibition of its expression, the enhancement of strain PX099 resistance at the same time, also can cause rice male sterility (pollen), reduce the seed setting rate.
===Localization===
Rice xa13 recessive resistance gene is Os - 8 N3 alleles, Os - 8 N3 element (NODULIN3, N3) root nodules and belongs to one of the members of the family, Xa13 is Located in the chromosome 8.
===Expression===
Os - 8 n3 is a pathogen of bacterial leaf blight disease genes, the resistance of recessive alleles can be those who have a class III effect AvrXa7, PthXo2 or PthXo3 pathogen small kind of damage, the effects of child all belong to class members of the family of transcription activation son son (TAL) effect. AvrXa7 PthXo3 can activate the N3 and another member of the family genes Os - 11 N3 expression. Os - 11 n3 insertion mutation or mediated by RNA silence, for those who rely on AvrXa7 and PthXo3 disease specific disease of small kind of loss. Results further indicated that AvrXa7 drive Os - 11 n3 expression, and AvrXa7 can with Os - 11 n3 promoter specific combination of component interactions.

===Evolution===
1.the researches of TAL effect specific combination model
2.TAL effect child repetitive structure domain by choice, used to overcome the explicit and implicit two forms of rice bacterial leaf blight resistance
3.Researchers find two proteins:Os-8N3 and Os-11N3 ,they are coding close relatives,and the functions are studied.
You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
1. Changyan Li;Jing Wei;Yongjun Lin;Hao Chen
Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Plant Cell Reports, 2012, 31(5): 851-862
2. Ting Yuan;Xianghua Li;Jinghua Xiao;Shiping Wang
Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13
Molecular Plant, 2011, 4(2): 300-309
3. Ginny Antony;Junhui Zhou;Sheng Huang;Ting Lib;Bo Liu;Frank White;Bing Yang
Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
The Plant Cell, 2010, 22(11): 3864-3876
4. Meng Yuan;Zhaohui Chu;Xianghua Li;Caiguo Xu;Shiping Wang
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
The Plant Cell, 2010, 22(9): 3164-3176
5. Zhaohui Chu;Meng Yuan;Jialing Yao;Xiaojia Ge;Bin Yuan;Caiguo Xu;Xianghua Li;Binying Fu;Zhikang Li;Jeffrey L. Bennetzen;Qifa Zhang and Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
GENES & DEVELOPMENT, 2006, 20(10): 1250-1255
6. Zhaohui Chu;Binying Fu;Hong Yang;Caiguo Xu;Zhikang Li;A. Sanchez;Y. J. Park;J. L. Bennetzen;Qifa Zhang and Shiping Wang
Targeting xa13, a recessive gene for bacterial blight resistance in rice
Theoretical and Applied Genetics, 2006, 112(3): 455-461
7. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India
Phytopathology, 2001, 85(5): 506-512
8. A. C. Sanchez;L. L. Ilag;D. Yang;D. S. Brar;F. Ausubel;G. S. Khush;M. Yano;T. Sasaki;Z. Li;N. Huang
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice
Theoretical and Applied Genetics, 1999, 98(6-7): 1022-1028
9. G. Zhang;E. R. Angeles;M. L. P. Abenes;G. S. Khush and N. Huang
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice
Theoretical and Applied Genetics, 1996, 93(1-2): 65-70
10. T. OGAWA, Luo LIN, R. E. TABIEN and G. S. KHUSH
A new recessive gene for resistance to bacterial blight of rice
Rice Genetics Newsletters, 1987, 4(0): 98-100

==Structured Information==
{{JaponicaGene|
GeneName = Os08g0535200|
Description = Similar to MtN3-like protein|
Version = NM_001068889.1 GI:115477516 GeneID:4346153|
Length = 2843 bp|
Definition = Oryza sativa Japonica Group Os08g0535200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:26813957..26816799|
CDS = 26814378..26814713,26814806..26814925,26815020..26815392,26815491..26815527,26816571..26816628 |
GCID = <gbrowseImage1>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggaaacatcatctccttcctggtgttccttgcaccagtggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatgtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtga</cdnaseq>|
AA = <aaseq>MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKST GGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRAR LRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVI KTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRK PRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAA EQAADGVAAAAAADKELLQNKPEVIEITAAV</aaseq>|
DNA = <dnaseqindica>2087..2422#1875..1994#1408..1780#1273..1309#172..229#acacatgcagttgtagtagcacttaagccttcctctctagctagcatctcttgtgtcaggaagttggaagggatttctggctagtttctagctggtgtctcctctcctcttcctaaccttctcactgattaacaccttagagttagttaataaccttcatcaccagtagcaatggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggtaaagcatgcaaccaatgcataatgctcaaacttaatttcatcatcatcatcatcatcatcatcttcacagccatgatcatccatggacaaatgcaactgaagatcattttagttttcatatgctaatgatcaaattcaggttaattgctgtttaatttctccatacactagttgttgtctgcaccattgcattgtgcacagcacacacacgcttttgatgcttctaggaatgcatatctgttcagcagttcacacagtgcagcagggcaatgttgttaaaaaatcttctccttttttttatgtccttgtgttcttgagctttctgtctccattgatctgcttttttcttgtttacaagtgatgggcacaagtcacttccctagcttcagctcatgcatggagcaggaatctcacttcaaaagacctagcactttttctctcttcacctttttgcctcaacacatgcccagtttctggccacacaaacataaacacatatactatctagctgcataattgcatcaaattaagcagggtttgtttcagctaggaattccacacataggtcattaattagtattgccaactttctcaacatgcatgcactctagtactctacctaagctagctcccagattagcttctgctaatttaattccgatttcttgaaatggagatcggttgagcagtgagggaggcgtgcatctgctcctcttcgtcgctgtcactaaacaaaagcagagctagctaggtggtaacaaactgatttgatttttgtcagtaaacaaaaatgaccaattaatgacccatcaaccagtttcaattctcgatcctaacctagctaacatctctgaaactctgaaagaacattactatcttactgacagtgtatatatatgcaaactaaaattttattttattttatcctaacctagctaacatatctgcatccgtgtgaaccagctgaaactctgaaagaatgttactccactgatcatatattaattaacgatgtcgttttctgtcttgtttcttttgcaggaaacatcatctccttcctggtgttccttgcaccagtgtgagtactccattcctactgtcaccatcaaaatctcgagagaaacatctgaatatctctgacgacgaactggaatttatatctctgaaaaattgcagggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcgtaagcttaagctctctaccccccctctacatttcactgacatcaattgcattatgtagctgagcatttctgttgatgatgatgatgcttgcagttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatggtgagctcagctgccgccattgatagagctgctcgacgacgccattgttgtgaattgttttgagctgacttgcatttcttggtgcgatgcagtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtgacgacgactgatctcgacgacgacagattctcgctactgatgaagaagacgacgacgatggccggatcgatgacggacagaatttagcagtgtggattactaccgaactttaattagttggttaattattggattacaatgtggtaagagtgtgtcattagcagctagttaacttacttaaattaattatcttgttcagtcagtcagtcagtcagtcagtcagtcagctttgagtgagtgagtgagtgatctcgacgtagtttgctggttggtgtaataagaaaaaggcgatctactagtagtctactagctagtacgcatgcatgtgtgtgtgctctacttaccgtgttgcaatctcatctctttgtacttacaactcagaaatcaatggaagattgtgacaggtattattagtagttact</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068889.1 RefSeq:Os08g0535200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os08g0535200

2014-05-25T09:17:15Z

QfangYang: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
1. Changyan Li;Jing Wei;Yongjun Lin;Hao Chen
Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Plant Cell Reports, 2012, 31(5): 851-862
2. Ting Yuan;Xianghua Li;Jinghua Xiao;Shiping Wang
Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13
Molecular Plant, 2011, 4(2): 300-309
3. Ginny Antony;Junhui Zhou;Sheng Huang;Ting Lib;Bo Liu;Frank White;Bing Yang
Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
The Plant Cell, 2010, 22(11): 3864-3876
4. Meng Yuan;Zhaohui Chu;Xianghua Li;Caiguo Xu;Shiping Wang
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
The Plant Cell, 2010, 22(9): 3164-3176
5. Zhaohui Chu;Meng Yuan;Jialing Yao;Xiaojia Ge;Bin Yuan;Caiguo Xu;Xianghua Li;Binying Fu;Zhikang Li;Jeffrey L. Bennetzen;Qifa Zhang and Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice
GENES & DEVELOPMENT, 2006, 20(10): 1250-1255
6. Zhaohui Chu;Binying Fu;Hong Yang;Caiguo Xu;Zhikang Li;A. Sanchez;Y. J. Park;J. L. Bennetzen;Qifa Zhang and Shiping Wang
Targeting xa13, a recessive gene for bacterial blight resistance in rice
Theoretical and Applied Genetics, 2006, 112(3): 455-461
7. Marella Lalitha Shanti; M. L. C. George; C. M. Vera Cruz; M. A. Bernardo; R. J. Nelson; H. Leung; J. N. Reddy and R. Sridhar
Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India
Phytopathology, 2001, 85(5): 506-512
8. A. C. Sanchez;L. L. Ilag;D. Yang;D. S. Brar;F. Ausubel;G. S. Khush;M. Yano;T. Sasaki;Z. Li;N. Huang
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice
Theoretical and Applied Genetics, 1999, 98(6-7): 1022-1028
9. G. Zhang;E. R. Angeles;M. L. P. Abenes;G. S. Khush and N. Huang
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice
Theoretical and Applied Genetics, 1996, 93(1-2): 65-70
10. T. OGAWA, Luo LIN, R. E. TABIEN and G. S. KHUSH
A new recessive gene for resistance to bacterial blight of rice
Rice Genetics Newsletters, 1987, 4(0): 98-100

==Structured Information==
{{JaponicaGene|
GeneName = Os08g0535200|
Description = Similar to MtN3-like protein|
Version = NM_001068889.1 GI:115477516 GeneID:4346153|
Length = 2843 bp|
Definition = Oryza sativa Japonica Group Os08g0535200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
AP = Chromosome 8:26813957..26816799|
CDS = 26814378..26814713,26814806..26814925,26815020..26815392,26815491..26815527,26816571..26816628 |
GCID = <gbrowseImage1>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008401:26813957..26816799
source=RiceChromosome08
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggaaacatcatctccttcctggtgttccttgcaccagtggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatgtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtga</cdnaseq>|
AA = <aaseq>MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKST GGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRAR LRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVI KTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRK PRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAA EQAADGVAAAAAADKELLQNKPEVIEITAAV</aaseq>|
DNA = <dnaseqindica>2087..2422#1875..1994#1408..1780#1273..1309#172..229#acacatgcagttgtagtagcacttaagccttcctctctagctagcatctcttgtgtcaggaagttggaagggatttctggctagtttctagctggtgtctcctctcctcttcctaaccttctcactgattaacaccttagagttagttaataaccttcatcaccagtagcaatggcaggaggtttcttgtccatggctaacccggcggtcaccctctccggtgttgcaggtaaagcatgcaaccaatgcataatgctcaaacttaatttcatcatcatcatcatcatcatcatcttcacagccatgatcatccatggacaaatgcaactgaagatcattttagttttcatatgctaatgatcaaattcaggttaattgctgtttaatttctccatacactagttgttgtctgcaccattgcattgtgcacagcacacacacgcttttgatgcttctaggaatgcatatctgttcagcagttcacacagtgcagcagggcaatgttgttaaaaaatcttctccttttttttatgtccttgtgttcttgagctttctgtctccattgatctgcttttttcttgtttacaagtgatgggcacaagtcacttccctagcttcagctcatgcatggagcaggaatctcacttcaaaagacctagcactttttctctcttcacctttttgcctcaacacatgcccagtttctggccacacaaacataaacacatatactatctagctgcataattgcatcaaattaagcagggtttgtttcagctaggaattccacacataggtcattaattagtattgccaactttctcaacatgcatgcactctagtactctacctaagctagctcccagattagcttctgctaatttaattccgatttcttgaaatggagatcggttgagcagtgagggaggcgtgcatctgctcctcttcgtcgctgtcactaaacaaaagcagagctagctaggtggtaacaaactgatttgatttttgtcagtaaacaaaaatgaccaattaatgacccatcaaccagtttcaattctcgatcctaacctagctaacatctctgaaactctgaaagaacattactatcttactgacagtgtatatatatgcaaactaaaattttattttattttatcctaacctagctaacatatctgcatccgtgtgaaccagctgaaactctgaaagaatgttactccactgatcatatattaattaacgatgtcgttttctgtcttgtttcttttgcaggaaacatcatctccttcctggtgttccttgcaccagtgtgagtactccattcctactgtcaccatcaaaatctcgagagaaacatctgaatatctctgacgacgaactggaatttatatctctgaaaaattgcagggcgacgttcttgcaggtgtacaagaagaagtcgacgggagggtacagctcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtgaagaccaactcgaggccgctgctgaccatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctacgcgccgcgccgcgccaggctccgcaccctcgccttcttcctcctcctcgacgtcgccgccttcgccctcatcgtcgtcaccaccctctacctcgtccccaagccccaccaggtcaagttcctcggcagcgtctgcctcgccttctccatggccgtcttcgtcgcccctctctccatcatcgtaagcttaagctctctaccccccctctacatttcactgacatcaattgcattatgtagctgagcatttctgttgatgatgatgatgcttgcagttcaaggtgatcaagaccaagagcgtcgagttcatgccgatcgggctctccgtctgcctcacgctcagcgccgtcgcgtggttctgctacggcctcttcaccaaggacccctacgtcatggtgagctcagctgccgccattgatagagctgctcgacgacgccattgttgtgaattgttttgagctgacttgcatttcttggtgcgatgcagtacccgaacgtgggcggcttcttcttcagctgcgtgcagatggggctctacttctggtaccggaagccgaggaacacggccgtgctgccgacgacgtccgactccatgtccccgatctccgccgccgccgccgccacgcagagggtgatcgagctccccgccggcacgcacgccttcaccatcctgtccgtgagccccatcccgatcctcggcgtgcacaaggtcgaggtggtggccgccgagcaggcggccgacggcgtcgccgccgccgccgccgccgacaaggagctgctgcagaacaagccggaggtgatcgagatcaccgccgccgtgtgacgacgactgatctcgacgacgacagattctcgctactgatgaagaagacgacgacgatggccggatcgatgacggacagaatttagcagtgtggattactaccgaactttaattagttggttaattattggattacaatgtggtaagagtgtgtcattagcagctagttaacttacttaaattaattatcttgttcagtcagtcagtcagtcagtcagtcagtcagctttgagtgagtgagtgagtgatctcgacgtagtttgctggttggtgtaataagaaaaaggcgatctactagtagtctactagctagtacgcatgcatgtgtgtgtgctctacttaccgtgttgcaatctcatctctttgtacttacaactcagaaatcaatggaagattgtgacaggtattattagtagttact</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068889.1 RefSeq:Os08g0535200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]