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Os02g0669000

2014-06-09T15:52:42Z

Sharry:

Os02g0669000

2014-06-09T15:49:32Z

Sharry:

File:Li-Os02g0669000-Fig6.png

2014-06-09T15:48:55Z

Sharry:

2014-06-09T15:28:38Z

Sharry:

Os02g0669000

2014-06-09T15:27:57Z

Sharry:

Os02g0669000 gene is an protein-coding gene of rice, who's organism name is Oryza sativa Japonica Group. Os02g0669000 has the ID 4330264 in NCBI Gene Bank, and it's internal genotype ID is 1330276.
==Annotated Information==

===Function===
Os02g0669000 can encode GDSL domain containing protein such as Lipase (Lipolytic enzyme) and GDSL family protein. Os02g0669000 protein also called putative anter-specific proline-rich protein, which function is expressing GDSL-like lipase/acylhydrolase super family protein . This Os02g0669000 gene participate in biological process such as lipid metabolic process, it also has molecular function like hydrolase activity, and acting on ester bonds.

===Expression===
Os02g0669000 can express GDSL-like lipase/acylhydrolase protein.Os02g0669000 has many coexpressed genes, such as Os1g0198200 which encode conserved hypothetical protein, Os02g0291000 which encodes EF-Hand type domain containing protein.

The top 20 coexpressed genes (in field leaf samples):
[[File: li-Os02g0669000-Fig1.png|right|thumb|200px|''The top 20 coexpressed genes (in field leaf samples). '']]

Os02g0669000 co-expression analysis, find that it has homology with Arabidopsis, similiar to At3g18740: 60s ribosomal protein L30 (RPL 30C).
The fragment of RNA gene and IR GSP gene showed below:
[[File: li-Os02g0669000-Fig2.png|right|thumb|200px|''The fragment of RNA gene and IR GSP gene. '']]
===Evolution===
Os02g0669000 has two transcript variants: Os02t0669000-01,Os02t0669000-02,These transcripts are products of gene OS02g0669000.
Name Transcript ID Length(bp) Protein ID Length(aa) Biotype
P0684A08.8-201 Os02t0669000-01 1452 Oso2t0669000-01 376 Protein coding

Analyse and create the gene tree, conclude the information of the gene tree:
Number of genes: 367
Number of speciation nodes: 258
Number of duplication: 102
Number of ambiguous: 0
Number of gene split events: 6
[[File: li-Os02g0669000-Fig2.jpeg|right|thumb|200px|''gene tree. '']]
We also has the detail information about Os02g0669000’s co-expressed gene tree(HyperTree),which can be found in link: http://ricefrend.dna.affrc.go.jp/HyperTree/index.php?id=11509&rank=3&mr=7
[[File: li-Os02g0669000-Fig4.jpeg|right|thumb|200px|''HyperTree. '']]
Search on all the database and figure out that there is no differential expression were found for Os02g669000.
==Alignments and location of this gene==
Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
chromosome: IRGSP-1.0:2:27158293:27162781:-1(the onese with parenthesesare all exons)
GCCGCTCCGGTCGCGGCCCCTCCCTTTCCCAAAAGCAAACAAGGGATAGGTTTGCCGTTC(AGCCCCCACCCAGAGCCAGCGGACTGCACCTCGCAGTCCGGCATGGCTGGACAGATGCTACCGCCGATTGCGCTTGTTGCTGTGGCCATCTGTATCACCGCGGCGGCGGCGGCGAAGGTGCCGGCGATATACGTGTTCGGCGACTCCACGGCCGATGTCGGCAACAACAACTACCTGACCGGCGCCGCCGTGCCGCGGGCAAACTTCCCGCACAACGGCATTGACTTCCCCACGTCGCGGCCCACCGGCCGGTTCAGCAACGGGTACAACGGCGTCGACTTCTTGG)GTACGTACAGCTTCGCCGCCCGTCTTTCCTGTGCTGTATTGCCTCGCGACTCTGCTTGCCATGCGATGCGAGTATACTTCGGCACTTCGCGGTATAGTAGCGGCTGGCATCGTTGCATATCTGACAACCACGTATATAGCCGGTGATTGTTTCGTTTTTTCTGCATGTTTTTTGTCAACTTCGGCATTGCAAGTTTTGTAACGGTGCTAGAGTTGAGTAGGGGTGAAGACTGGAGACGATTAAGTCTTCGTCTCTATACTATTTCCGCGGTCCAATTACCGAAGGCAAGAAGTGGAAATTGCTTTGAAAACGGAGAGATTGTCGCATACTCCCTCCGTCCCAAAAAAAACCAACAAAGGTTGTGCCATACTACCTTTGTAAAAAAAAAAACTACGGAGAGTATGTTTAGATTTGTTTTTGTTTTATGGATCATATCTTATCTTAATATAACAATATTTTGAGAGGGAGTAAATAGAACATAAAAAATGTTTTGAAGAAGAACCCCATACTTCAGAACTGTGAAGTGCGCAACGCCAGGGCAGTGTGCCACTGTGGCGCACACATTCCAGAGGTCGCCTATGCTTAAATCGATAGTTGGCTCGTTGCTGCCCGAATTAAATTTGAAAATATATTGTTAATTCATTTTATTTTTAGAAATATTCGAGATTTATTTTTTAAAAAAATTATACCGTTGATCTTGCACAATCATTATGCGAATGTGAGGTGGTGCGACTTCGCGGGCGGTATCGCGCGAGACTGCGCGGTCTTGCGAAATGAAAGAACGATACCAGATTTCAAAATGGTTAATTAGTGATTAATTATTATGATTAGCAATTATTAAGTAATCATTAATTATTATTAGTTAAATAGTTAATTAGATCATTAGTCACTAACCAAATGGAGTTTGGGATGGTGTCGCTCTCTGCATGAGCGAGACCGCTCGTCATTCCTGCGACAGCGCGCGGTCGTGCGGTCGCCCCACGATACCGTCGTTGATGTCACCCCTATATTATTTTTATTTTCGGTTGTATGAGATCGACTGTATATTTCTATAAAAATAAATTACATCCTAAATATTTTTAAAAATAAAATTGAATGAACAGTATTTTTCAAATTTAATTCGCTGCTGCTCCACTTCCGCACGGGGCGCAGGCACACAGGCTTTGGGAAGCGATGCTTGCAAAGAGTGGCAGTGTCCGGCTGTTGGCAGGCGGGCGCGGCTGAATGGACCGATCACTCGAGACTTGGCGCTTGTCGCACATAAATGGCTGACCCGCTTGCATGTACTAGCCTTGATCCGGGCCACCACGCACTCATTGCATGTCCGAATTGGTACCAAAATCTACGGCACACATGACAAATCTACAGCAGACACGATCTGACGTACGGTCCAACATCGAGGTCATGCGATCGCCTTTTTAAGCGTTGGGACTGTTTGGGATGGAGATTGGGAGATAATGCCAAAATACGATAATGTGAGCAGCGCACGTATTTGAAAAATTCAAATACATTTTTTGCTGGCAAATGCCTTATAAAAGAAAATAAAGATTTAATCGTACGCGAAACATCAACATCGATAATAAAATTAATATTTGTAACTATTATATATATATATATATATTTTCCAATGTGATAGCATCTTAAGATTTCAGGTATGATGAATACAATACACACACATTTCGCTTTGTTCCGAGTCGATCTCGAAGATCCTATTACAATAATATTATAGGTGTTTTTCCTTTTTTTTATGTTGTCTAGATGCGGTTTTTCTACATCTAAATGTAGTTGCGCTTAGCGCGTCTGTAGCATAATCGTTTTCGCGATGCGTACTATATTTTCTTCTCATGGTATTGTTTTCCTCACCAAACCTGCGGTGGCTAGCCTAGGTGCTAAAAGGACTTTCTCAAAGCGTATGTCGTTCATTATATATTTTGACATGAGGGGTTTGGTCACTGGTGGGGAGGGTAGGGCAAGAAGCATGGCGGACCTAGGCTCATTGGCCATGGAAGAGACCAAGAAGGGCCTTGGCCATGCATTAAATAGAAGGATGGTGTTGTGGCCTAGAGGGAGAAGGAAGGTGTTTTCGTCATGTACTCTTCTTGCCTGATATGTAATGTTTCTCAGCTGAGAACCATTGCTTACATGTCGCTAACTTTTCCGATCAGGAATGGTTAAATATCGAATTCCAATCTATAATGCTTCTCCAACAGTTAGAGATTGATCAGTAAAGGTTTGACATATGGATGAATAATGGTTTCATGTTAGTTAGGCTTTATCGGGATCATTGCTTCTATAGTAGTAAGAGCGAGTACAATAGCAGGGTACAAGTCAGTTGTAAGCACATATGGAGAAGAGAAGAGAAGAGAGATAAAGAAGACGGGCTATAAACTTGTAGCCAGTTGCAGCATGGACTATAATACATTGTGCATATGAGAGGTGGGACCATATATTAATGGTGTAGTATATACTTATAAGTAACTATTGTATGAATGAGCTATTAGATTGGCTATAAATAAATTGAAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTAATAGTTAGTATTATTATGGGGAATGTGTAAGCCACGAGCACGGAGTAGCGCTTGCATTTTTGTTGTATATCTCGAGGATCACAATATTCTTCAACCTCTGTCAG(CTCTTAACATGGGATTCAGGCGCAGCCCCCCACCGTTCCTCGCCGTGGCTAACAAAACCAGCAACCCATTGTTCAGGGGGCTCCAGGGAACAAACTTTGCCTCTGCAGGATCAGGCATTCTCGACTCAACA)GTAAGCACGTCGGCATAAACCCAAAGCCACTGCACGATTTTTCGCTGAACACCGGCTGATGACGACGAAACACGTGTGTGCAG(GGTCAATCCATCATCCCAATGAGCAAGCAAGTGCAGCAATTCGCCGCCGTGCAACGCAACATCTCAGCACGCATCAGCCAGCAAGCCGCTGACACCGTGCTGTCGAGATCCCTGTTCCTGATCAGCACCGGCGGCAACGACATCTTCGCCTTCTTCTCCGCGAACAGCACGCCGTCGTCCGCGGAGATGCAGCGGTTCGTCACCAATCTCGTATCGCTCTACACAAATCATGTCAAG)GTAAAACCACCTTTCGCTTGTCTCTCATCACACAATTTTACGGCGAAGAAACACAAAGAATCTAACTGAAAGTTGACGCGTGAGCGCGGCAG(GATCTGTACGTTCTCGGGGCGAGGAAGTTCGCCGTGATCGACGTCCCGCCGATCGGGTGCTGCCCCTACCCGAGAAGCCTGCAACCGCTGGGCGCTTGCATCGACGTCCTCAACGAGCTGGCCCGTGGGTTGAACAAGGGAGTCAAGGACGCCATGCACGGCCTCAGCGTGAGCTTCAGCGGCTTCAAGTACTCCATCGGGAGCTCCCATGCCGTGGTGCAAAGCATCATGAAGCATCCCCAACGACTCG)GTATCTGAACATTCTACGCTTCAGTTTCGGATTTCTGACCAACGCAAGGTTCAGAGTTTCGTGACACGGCATTGGTGTGCAG(GATTCAAGGAGGTCACGACGGCTTGCTGCGGCTCCGGCAAGTTCAACGGCGAGTCCGGGTGCACGCCGAACGCCACGCTGTGCGACAACCGGCACGACTACCTCTTCTGGGACCTGCTGCACCCGACGCACGCCACGTCCAAGATCGCCGCCGCGGCCATATACAACGGCTCGGTCCGCTTCGCTGCGCCGATAAATTTCAGGCAGCTGGTGGATGACCAGCACTAGCTAGAGCGTGGCAGTGTCACCGTGTAACGTAGTACTACTAATTGTTGTACGTCGCCGACTATGTGTCTGTTTGTCTGGTGATATTGGTGCGTAGGATATGCTGGGCTGTGTTCATCAGTGGCTTGTGCTTTAGGCGGTGGTGTAGTTTGGATACACATACCAAAATGTCATCTCCGTTATTATTGTTGCCCTTGTTGGTATTTGCGGTGTTTGTGTTCCCAAGTCGGGATAATTTGAGCCTGGAGCGGATGAGCCAAGGACATCGCAGCTGCTTACTTGGTGCCAAATCGGAATACAAACTCTAAACATGTAGGTACATAC)ACATATGCCGGCC(ATGCCGTTCTTGGTCCCAGTTGGTATGTCCTCAGCTTGCGCCAGTTG)

To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:
[[File: li-Os02g0669000-Fig5.png|right|thumb|200px|''The position of Os02g0669000 loci. '']]

==References==
1."Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1725_H08."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
2."The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0669000|
Description = Lipolytic enzyme, G-D-S-L family protein|
Version = NM_001054223.1 GI:115447816 GeneID:4330264|
Length = 4369 bp|
Definition = Oryza sativa Japonica Group Os02g0669000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:28045214..28049582|
CDS = 28045535..28045761,28045844..28046093,28046186..28046422,28046506..28046636,28049297..28049540 |
GCID = <gbrowseImage1>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttggctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacaggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactag</cdnaseq>|
AA = <aaseq>MAGQMLPPIALVAVAICITAAAAAKVPAIYVFGDSTADVGNNNY LTGAAVPRANFPHNGIDFPTSRPTGRFSNGYNGVDFLALNMGFRRSPPPFLAVANKTS NPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTVLS RSLFLISTGGNDIFAFFSANSTPSSAEMQRFVTNLVSLYTNHVKDLYVLGARKFAVID VPPIGCCPYPRSLQPLGACIDVLNELARGLNKGVKDAMHGLSVSFSGFKYSIGSSHAV VQSIMKHPQRLGFKEVTTACCGSGKFNGESGCTPNATLCDNRHDYLFWDLLHPTHATS KIAAAAIYNGSVRFAAPINFRQLVDDQH</aaseq>|
DNA = <dnaseqindica>3822..4048#3490..3739#3161..3397#2947..3077#43..286#agcccccacccagagccagcggactgcacctcgcagtccggcatggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttgggtacgtacagcttcgccgcccgtctttcctgtgctgtattgcctcgcgactctgcttgccatgcgatgcgagtatacttcggcacttcgcggtatagtagcggctggcatcgttgcatatctgacaaccacgtatatagccggtgattgtttcgttttttctgcatgttttttgtcaacttcggcattgcaagttttgtaacggtgctagagttgagtaggggtgaagactggagacgattaagtcttcgtctctatactatttccgcggtccaattaccgaaggcaagaagtggaaattgctttgaaaacggagagattgtcgcatactccctccgtcccaaaaaaaaccaacaaaggttgtgccatactacctttgtaaaaaaaaaaactacggagagtatgtttagatttgtttttgttttatggatcatatcttatcttaatataacaatattttgagagggagtaaatagaacataaaaaatgttttgaagaagaaccccatacttcagaactgtgaagtgcgcaacgccagggcagtgtgccactgtggcgcacacattccagaggtcgcctatgcttaaatcgatagttggctcgttgctgcccgaattaaatttgaaaatatattgttaattcattttatttttagaaatattcgagatttattttttaaaaaaattataccgttgatcttgcacaatcattatgcgaatgtgaggtggtgcgacttcgcgggcggtatcgcgcgagactgcgcggtcttgcgaaatgaaagaacgataccagatttcaaaatggttaattagtgattaattattatgattagcaattattaagtaatcattaattattattagttaaatagttaattagatcattagtcactaaccaaatggagtttgggatggtgtcgctctctgcatgagcgagaccgctcgtcattcctgcgacagcgcgcggtcgtgcggtcgccccacgataccgtcgttgatgtcacccctatattatttttattttcggttgtatgagatcgactgtatatttctataaaaataaattacatcctaaatatttttaaaaataaaattgaatgaacagtatttttcaaatttaattcgctgctgctccacttccgcacggggcgcaggcacacaggctttgggaagcgatgcttgcaaagagtggcagtgtccggctgttggcaggcgggcgcggctgaatggaccgatcactcgagacttggcgcttgtcgcacataaatggctgacccgcttgcatgtactagccttgatccgggccaccacgcactcattgcatgtccgaattggtaccaaaatctacggcacacatgacaaatctacagcagacacgatctgacgtacggtccaacatcgaggtcatgcgatcgcctttttaagcgttgggactgtttgggatggagattgggagataatgccaaaatacgataatgtgagcagcgcacgtatttgaaaaattcaaatacattttttgctggcaaatgccttataaaagaaaataaagatttaatcgtacgcgaaacatcaacatcgataataaaattaatatttgtaactattatatatatatatatatattttccaatgtgatagcatcttaagatttcaggtatgatgaatacaatacacacacatttcgctttgttccgagtcgatctcgaagatcctattacaataatattataggtgtttttccttttttttatgttgtctagatgcggtttttctacatctaaatgtagttgcgcttagcgcgtctgtagcataatcgttttcgcgatgcgtactatattttcttctcatggtattgttttcctcaccaaacctgcggtggctagcctaggtgctaaaaggactttctcaaagcgtatgtcgttcattatatattttgacatgaggggtttggtcactggtggggagggtagggcaagaagcatggcggacctaggctcattggccatggaagagaccaagaagggccttggccatgcattaaatagaaggatggtgttgtggcctagagggagaaggaaggtgttttcgtcatgtactcttcttgcctgatatgtaatgtttctcagctgagaaccattgcttacatgtcgctaacttttccgatcaggaatggttaaatatcgaattccaatctataatgcttctccaacagttagagattgatcagtaaaggtttgacatatggatgaataatggtttcatgttagttaggctttatcgggatcattgcttctatagtagtaagagcgagtacaatagcagggtacaagtcagttgtaagcacatatggagaagagaagagaagagagataaagaagacgggctataaacttgtagccagttgcagcatggactataatacattgtgcatatgagaggtgggaccatatattaatggtgtagtatatacttataagtaactattgtatgaatgagctattagattggctataaataaattgaagctagtagttggctatactattaaacttgctctaatagttagtattattatggggaatgtgtaagccacgagcacggagtagcgcttgcatttttgttgtatatctcgaggatcacaatattcttcaacctctgtcagctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacagtaagcacgtcggcataaacccaaagccactgcacgatttttcgctgaacaccggctgatgacgacgaaacacgtgtgtgcagggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggtaaaaccacctttcgcttgtctctcatcacacaattttacggcgaagaaacacaaagaatctaactgaaagttgacgcgtgagcgcggcaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggtatctgaacattctacgcttcagtttcggatttctgaccaacgcaaggttcagagtttcgtgacacggcattggtgtgcaggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactagctagagcgtggcagtgtcaccgtgtaacgtagtactactaattgttgtacgtcgccgactatgtgtctgtttgtctggtgatattggtgcgtaggatatgctgggctgtgttcatcagtggcttgtgctttaggcggtggtgtagtttggatacacataccaaaatgtcatctccgttattattgttgcccttgttggtatttgcggtgtttgtgttcccaagtcgggataatttgagcctggagcggatgagccaaggacatcgcagctgcttacttggtgccaaatcggaatacaaactctaaacatgtaggtacatac</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054223.1 RefSeq:Os02g0669000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

2014-06-09T15:14:47Z

Sharry:

Os02g0669000

2014-06-09T15:14:35Z

Sharry:

Os02g0669000 gene is an protein-coding gene of rice, who's organism name is Oryza sativa Japonica Group. Os02g0669000 has the ID 4330264 in NCBI Gene Bank, and it's internal genotype ID is 1330276.
==Annotated Information==

===Function===
Os02g0669000 can encode GDSL domain containing protein such as Lipase (Lipolytic enzyme) and GDSL family protein. Os02g0669000 protein also called putative anter-specific proline-rich protein, which function is expressing GDSL-like lipase/acylhydrolase super family protein . This Os02g0669000 gene participate in biological process such as lipid metabolic process, it also has molecular function like hydrolase activity, and acting on ester bonds.

===Expression===
Os02g0669000 can express GDSL-like lipase/acylhydrolase protein.Os02g0669000 has many coexpressed genes, such as Os1g0198200 which encode conserved hypothetical protein, Os02g0291000 which encodes EF-Hand type domain containing protein.

The top 20 coexpressed genes (in field leaf samples):
[[File: li-Os02g0669000-Fig1.png|right|thumb|200px|''The top 20 coexpressed genes (in field leaf samples). '']]

Os02g0669000 co-expression analysis, find that it has homology with Arabidopsis, similiar to At3g18740: 60s ribosomal protein L30 (RPL 30C).
The fragment of RNA gene and IR GSP gene showed below:
[[File: li-Os02g0669000-Fig2.png|right|thumb|200px|''The fragment of RNA gene and IR GSP gene. '']]
===Evolution===
Os02g0669000 has two transcript variants: Os02t0669000-01,Os02t0669000-02,These transcripts are products of gene OS02g0669000.
Name Transcript ID Length(bp) Protein ID Length(aa) Biotype
P0684A08.8-201 Os02t0669000-01 1452 Oso2t0669000-01 376 Protein coding

Analyse and create the gene tree, conclude the information of the gene tree:
Number of genes: 367
Number of speciation nodes: 258
Number of duplication: 102
Number of ambiguous: 0
Number of gene split events: 6
[[File: li-Os02g0669000-Fig3.png|right|thumb|200px|''gene tree. '']]
We also has the detail information about Os02g0669000’s co-expressed gene tree(HyperTree),which can be found in link: http://ricefrend.dna.affrc.go.jp/HyperTree/index.php?id=11509&rank=3&mr=7
[[File: li-Os02g0669000-Fig4.png|right|thumb|200px|''HyperTree. '']]
Search on all the database and figure out that there is no differential expression were found for Os02g669000.
==Alignments and location of this gene==
Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
chromosome: IRGSP-1.0:2:27158293:27162781:-1(the onese with parenthesesare all exons)
GCCGCTCCGGTCGCGGCCCCTCCCTTTCCCAAAAGCAAACAAGGGATAGGTTTGCCGTTC(AGCCCCCACCCAGAGCCAGCGGACTGCACCTCGCAGTCCGGCATGGCTGGACAGATGCTACCGCCGATTGCGCTTGTTGCTGTGGCCATCTGTATCACCGCGGCGGCGGCGGCGAAGGTGCCGGCGATATACGTGTTCGGCGACTCCACGGCCGATGTCGGCAACAACAACTACCTGACCGGCGCCGCCGTGCCGCGGGCAAACTTCCCGCACAACGGCATTGACTTCCCCACGTCGCGGCCCACCGGCCGGTTCAGCAACGGGTACAACGGCGTCGACTTCTTGG)GTACGTACAGCTTCGCCGCCCGTCTTTCCTGTGCTGTATTGCCTCGCGACTCTGCTTGCCATGCGATGCGAGTATACTTCGGCACTTCGCGGTATAGTAGCGGCTGGCATCGTTGCATATCTGACAACCACGTATATAGCCGGTGATTGTTTCGTTTTTTCTGCATGTTTTTTGTCAACTTCGGCATTGCAAGTTTTGTAACGGTGCTAGAGTTGAGTAGGGGTGAAGACTGGAGACGATTAAGTCTTCGTCTCTATACTATTTCCGCGGTCCAATTACCGAAGGCAAGAAGTGGAAATTGCTTTGAAAACGGAGAGATTGTCGCATACTCCCTCCGTCCCAAAAAAAACCAACAAAGGTTGTGCCATACTACCTTTGTAAAAAAAAAAACTACGGAGAGTATGTTTAGATTTGTTTTTGTTTTATGGATCATATCTTATCTTAATATAACAATATTTTGAGAGGGAGTAAATAGAACATAAAAAATGTTTTGAAGAAGAACCCCATACTTCAGAACTGTGAAGTGCGCAACGCCAGGGCAGTGTGCCACTGTGGCGCACACATTCCAGAGGTCGCCTATGCTTAAATCGATAGTTGGCTCGTTGCTGCCCGAATTAAATTTGAAAATATATTGTTAATTCATTTTATTTTTAGAAATATTCGAGATTTATTTTTTAAAAAAATTATACCGTTGATCTTGCACAATCATTATGCGAATGTGAGGTGGTGCGACTTCGCGGGCGGTATCGCGCGAGACTGCGCGGTCTTGCGAAATGAAAGAACGATACCAGATTTCAAAATGGTTAATTAGTGATTAATTATTATGATTAGCAATTATTAAGTAATCATTAATTATTATTAGTTAAATAGTTAATTAGATCATTAGTCACTAACCAAATGGAGTTTGGGATGGTGTCGCTCTCTGCATGAGCGAGACCGCTCGTCATTCCTGCGACAGCGCGCGGTCGTGCGGTCGCCCCACGATACCGTCGTTGATGTCACCCCTATATTATTTTTATTTTCGGTTGTATGAGATCGACTGTATATTTCTATAAAAATAAATTACATCCTAAATATTTTTAAAAATAAAATTGAATGAACAGTATTTTTCAAATTTAATTCGCTGCTGCTCCACTTCCGCACGGGGCGCAGGCACACAGGCTTTGGGAAGCGATGCTTGCAAAGAGTGGCAGTGTCCGGCTGTTGGCAGGCGGGCGCGGCTGAATGGACCGATCACTCGAGACTTGGCGCTTGTCGCACATAAATGGCTGACCCGCTTGCATGTACTAGCCTTGATCCGGGCCACCACGCACTCATTGCATGTCCGAATTGGTACCAAAATCTACGGCACACATGACAAATCTACAGCAGACACGATCTGACGTACGGTCCAACATCGAGGTCATGCGATCGCCTTTTTAAGCGTTGGGACTGTTTGGGATGGAGATTGGGAGATAATGCCAAAATACGATAATGTGAGCAGCGCACGTATTTGAAAAATTCAAATACATTTTTTGCTGGCAAATGCCTTATAAAAGAAAATAAAGATTTAATCGTACGCGAAACATCAACATCGATAATAAAATTAATATTTGTAACTATTATATATATATATATATATTTTCCAATGTGATAGCATCTTAAGATTTCAGGTATGATGAATACAATACACACACATTTCGCTTTGTTCCGAGTCGATCTCGAAGATCCTATTACAATAATATTATAGGTGTTTTTCCTTTTTTTTATGTTGTCTAGATGCGGTTTTTCTACATCTAAATGTAGTTGCGCTTAGCGCGTCTGTAGCATAATCGTTTTCGCGATGCGTACTATATTTTCTTCTCATGGTATTGTTTTCCTCACCAAACCTGCGGTGGCTAGCCTAGGTGCTAAAAGGACTTTCTCAAAGCGTATGTCGTTCATTATATATTTTGACATGAGGGGTTTGGTCACTGGTGGGGAGGGTAGGGCAAGAAGCATGGCGGACCTAGGCTCATTGGCCATGGAAGAGACCAAGAAGGGCCTTGGCCATGCATTAAATAGAAGGATGGTGTTGTGGCCTAGAGGGAGAAGGAAGGTGTTTTCGTCATGTACTCTTCTTGCCTGATATGTAATGTTTCTCAGCTGAGAACCATTGCTTACATGTCGCTAACTTTTCCGATCAGGAATGGTTAAATATCGAATTCCAATCTATAATGCTTCTCCAACAGTTAGAGATTGATCAGTAAAGGTTTGACATATGGATGAATAATGGTTTCATGTTAGTTAGGCTTTATCGGGATCATTGCTTCTATAGTAGTAAGAGCGAGTACAATAGCAGGGTACAAGTCAGTTGTAAGCACATATGGAGAAGAGAAGAGAAGAGAGATAAAGAAGACGGGCTATAAACTTGTAGCCAGTTGCAGCATGGACTATAATACATTGTGCATATGAGAGGTGGGACCATATATTAATGGTGTAGTATATACTTATAAGTAACTATTGTATGAATGAGCTATTAGATTGGCTATAAATAAATTGAAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTAATAGTTAGTATTATTATGGGGAATGTGTAAGCCACGAGCACGGAGTAGCGCTTGCATTTTTGTTGTATATCTCGAGGATCACAATATTCTTCAACCTCTGTCAG(CTCTTAACATGGGATTCAGGCGCAGCCCCCCACCGTTCCTCGCCGTGGCTAACAAAACCAGCAACCCATTGTTCAGGGGGCTCCAGGGAACAAACTTTGCCTCTGCAGGATCAGGCATTCTCGACTCAACA)GTAAGCACGTCGGCATAAACCCAAAGCCACTGCACGATTTTTCGCTGAACACCGGCTGATGACGACGAAACACGTGTGTGCAG(GGTCAATCCATCATCCCAATGAGCAAGCAAGTGCAGCAATTCGCCGCCGTGCAACGCAACATCTCAGCACGCATCAGCCAGCAAGCCGCTGACACCGTGCTGTCGAGATCCCTGTTCCTGATCAGCACCGGCGGCAACGACATCTTCGCCTTCTTCTCCGCGAACAGCACGCCGTCGTCCGCGGAGATGCAGCGGTTCGTCACCAATCTCGTATCGCTCTACACAAATCATGTCAAG)GTAAAACCACCTTTCGCTTGTCTCTCATCACACAATTTTACGGCGAAGAAACACAAAGAATCTAACTGAAAGTTGACGCGTGAGCGCGGCAG(GATCTGTACGTTCTCGGGGCGAGGAAGTTCGCCGTGATCGACGTCCCGCCGATCGGGTGCTGCCCCTACCCGAGAAGCCTGCAACCGCTGGGCGCTTGCATCGACGTCCTCAACGAGCTGGCCCGTGGGTTGAACAAGGGAGTCAAGGACGCCATGCACGGCCTCAGCGTGAGCTTCAGCGGCTTCAAGTACTCCATCGGGAGCTCCCATGCCGTGGTGCAAAGCATCATGAAGCATCCCCAACGACTCG)GTATCTGAACATTCTACGCTTCAGTTTCGGATTTCTGACCAACGCAAGGTTCAGAGTTTCGTGACACGGCATTGGTGTGCAG(GATTCAAGGAGGTCACGACGGCTTGCTGCGGCTCCGGCAAGTTCAACGGCGAGTCCGGGTGCACGCCGAACGCCACGCTGTGCGACAACCGGCACGACTACCTCTTCTGGGACCTGCTGCACCCGACGCACGCCACGTCCAAGATCGCCGCCGCGGCCATATACAACGGCTCGGTCCGCTTCGCTGCGCCGATAAATTTCAGGCAGCTGGTGGATGACCAGCACTAGCTAGAGCGTGGCAGTGTCACCGTGTAACGTAGTACTACTAATTGTTGTACGTCGCCGACTATGTGTCTGTTTGTCTGGTGATATTGGTGCGTAGGATATGCTGGGCTGTGTTCATCAGTGGCTTGTGCTTTAGGCGGTGGTGTAGTTTGGATACACATACCAAAATGTCATCTCCGTTATTATTGTTGCCCTTGTTGGTATTTGCGGTGTTTGTGTTCCCAAGTCGGGATAATTTGAGCCTGGAGCGGATGAGCCAAGGACATCGCAGCTGCTTACTTGGTGCCAAATCGGAATACAAACTCTAAACATGTAGGTACATAC)ACATATGCCGGCC(ATGCCGTTCTTGGTCCCAGTTGGTATGTCCTCAGCTTGCGCCAGTTG)

To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:
[[File: li-Os02g0669000-Fig5.png|right|thumb|200px|''The position of Os02g0669000 loci. '']]

==References==
1."Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1725_H08."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
2."The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0669000|
Description = Lipolytic enzyme, G-D-S-L family protein|
Version = NM_001054223.1 GI:115447816 GeneID:4330264|
Length = 4369 bp|
Definition = Oryza sativa Japonica Group Os02g0669000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:28045214..28049582|
CDS = 28045535..28045761,28045844..28046093,28046186..28046422,28046506..28046636,28049297..28049540 |
GCID = <gbrowseImage1>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttggctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacaggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactag</cdnaseq>|
AA = <aaseq>MAGQMLPPIALVAVAICITAAAAAKVPAIYVFGDSTADVGNNNY LTGAAVPRANFPHNGIDFPTSRPTGRFSNGYNGVDFLALNMGFRRSPPPFLAVANKTS NPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTVLS RSLFLISTGGNDIFAFFSANSTPSSAEMQRFVTNLVSLYTNHVKDLYVLGARKFAVID VPPIGCCPYPRSLQPLGACIDVLNELARGLNKGVKDAMHGLSVSFSGFKYSIGSSHAV VQSIMKHPQRLGFKEVTTACCGSGKFNGESGCTPNATLCDNRHDYLFWDLLHPTHATS KIAAAAIYNGSVRFAAPINFRQLVDDQH</aaseq>|
DNA = <dnaseqindica>3822..4048#3490..3739#3161..3397#2947..3077#43..286#agcccccacccagagccagcggactgcacctcgcagtccggcatggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttgggtacgtacagcttcgccgcccgtctttcctgtgctgtattgcctcgcgactctgcttgccatgcgatgcgagtatacttcggcacttcgcggtatagtagcggctggcatcgttgcatatctgacaaccacgtatatagccggtgattgtttcgttttttctgcatgttttttgtcaacttcggcattgcaagttttgtaacggtgctagagttgagtaggggtgaagactggagacgattaagtcttcgtctctatactatttccgcggtccaattaccgaaggcaagaagtggaaattgctttgaaaacggagagattgtcgcatactccctccgtcccaaaaaaaaccaacaaaggttgtgccatactacctttgtaaaaaaaaaaactacggagagtatgtttagatttgtttttgttttatggatcatatcttatcttaatataacaatattttgagagggagtaaatagaacataaaaaatgttttgaagaagaaccccatacttcagaactgtgaagtgcgcaacgccagggcagtgtgccactgtggcgcacacattccagaggtcgcctatgcttaaatcgatagttggctcgttgctgcccgaattaaatttgaaaatatattgttaattcattttatttttagaaatattcgagatttattttttaaaaaaattataccgttgatcttgcacaatcattatgcgaatgtgaggtggtgcgacttcgcgggcggtatcgcgcgagactgcgcggtcttgcgaaatgaaagaacgataccagatttcaaaatggttaattagtgattaattattatgattagcaattattaagtaatcattaattattattagttaaatagttaattagatcattagtcactaaccaaatggagtttgggatggtgtcgctctctgcatgagcgagaccgctcgtcattcctgcgacagcgcgcggtcgtgcggtcgccccacgataccgtcgttgatgtcacccctatattatttttattttcggttgtatgagatcgactgtatatttctataaaaataaattacatcctaaatatttttaaaaataaaattgaatgaacagtatttttcaaatttaattcgctgctgctccacttccgcacggggcgcaggcacacaggctttgggaagcgatgcttgcaaagagtggcagtgtccggctgttggcaggcgggcgcggctgaatggaccgatcactcgagacttggcgcttgtcgcacataaatggctgacccgcttgcatgtactagccttgatccgggccaccacgcactcattgcatgtccgaattggtaccaaaatctacggcacacatgacaaatctacagcagacacgatctgacgtacggtccaacatcgaggtcatgcgatcgcctttttaagcgttgggactgtttgggatggagattgggagataatgccaaaatacgataatgtgagcagcgcacgtatttgaaaaattcaaatacattttttgctggcaaatgccttataaaagaaaataaagatttaatcgtacgcgaaacatcaacatcgataataaaattaatatttgtaactattatatatatatatatatattttccaatgtgatagcatcttaagatttcaggtatgatgaatacaatacacacacatttcgctttgttccgagtcgatctcgaagatcctattacaataatattataggtgtttttccttttttttatgttgtctagatgcggtttttctacatctaaatgtagttgcgcttagcgcgtctgtagcataatcgttttcgcgatgcgtactatattttcttctcatggtattgttttcctcaccaaacctgcggtggctagcctaggtgctaaaaggactttctcaaagcgtatgtcgttcattatatattttgacatgaggggtttggtcactggtggggagggtagggcaagaagcatggcggacctaggctcattggccatggaagagaccaagaagggccttggccatgcattaaatagaaggatggtgttgtggcctagagggagaaggaaggtgttttcgtcatgtactcttcttgcctgatatgtaatgtttctcagctgagaaccattgcttacatgtcgctaacttttccgatcaggaatggttaaatatcgaattccaatctataatgcttctccaacagttagagattgatcagtaaaggtttgacatatggatgaataatggtttcatgttagttaggctttatcgggatcattgcttctatagtagtaagagcgagtacaatagcagggtacaagtcagttgtaagcacatatggagaagagaagagaagagagataaagaagacgggctataaacttgtagccagttgcagcatggactataatacattgtgcatatgagaggtgggaccatatattaatggtgtagtatatacttataagtaactattgtatgaatgagctattagattggctataaataaattgaagctagtagttggctatactattaaacttgctctaatagttagtattattatggggaatgtgtaagccacgagcacggagtagcgcttgcatttttgttgtatatctcgaggatcacaatattcttcaacctctgtcagctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacagtaagcacgtcggcataaacccaaagccactgcacgatttttcgctgaacaccggctgatgacgacgaaacacgtgtgtgcagggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggtaaaaccacctttcgcttgtctctcatcacacaattttacggcgaagaaacacaaagaatctaactgaaagttgacgcgtgagcgcggcaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggtatctgaacattctacgcttcagtttcggatttctgaccaacgcaaggttcagagtttcgtgacacggcattggtgtgcaggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactagctagagcgtggcagtgtcaccgtgtaacgtagtactactaattgttgtacgtcgccgactatgtgtctgtttgtctggtgatattggtgcgtaggatatgctgggctgtgttcatcagtggcttgtgctttaggcggtggtgtagtttggatacacataccaaaatgtcatctccgttattattgttgcccttgttggtatttgcggtgtttgtgttcccaagtcgggataatttgagcctggagcggatgagccaaggacatcgcagctgcttacttggtgccaaatcggaatacaaactctaaacatgtaggtacatac</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054223.1 RefSeq:Os02g0669000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

Os02g0669000

2014-06-09T15:11:04Z

Sharry:

Os02g0669000 gene is an protein-coding gene of rice, who's organism name is Oryza sativa Japonica Group. Os02g0669000 has the ID 4330264 in NCBI Gene Bank, and it's internal genotype ID is 1330276.
==Annotated Information==

===Function===
Os02g0669000 can encode GDSL domain containing protein such as Lipase (Lipolytic enzyme) and GDSL family protein. Os02g0669000 protein also called putative anter-specific proline-rich protein, which function is expressing GDSL-like lipase/acylhydrolase super family protein . This Os02g0669000 gene participate in biological process such as lipid metabolic process, it also has molecular function like hydrolase activity, and acting on ester bonds.

===Expression===
Os02g0669000 can express GDSL-like lipase/acylhydrolase protein.Os02g0669000 has many coexpressed genes, such as Os1g0198200 which encode conserved hypothetical protein, Os02g0291000 which encodes EF-Hand type domain containing protein.

The top 20 coexpressed genes (in field leaf samples):
[[File: li-Os02g0669000-Fig1.png|right|thumb|200px|''The top 20 coexpressed genes (in field leaf samples). '']]

Os02g0669000 co-expression analysis, find that it has homology with Arabidopsis, similiar to At3g18740: 60s ribosomal protein L30 (RPL 30C).
The fragment of RNA gene and IR GSP gene showed below:
[[File: li-Os02g0669000-Fig2.jpeg|right|thumb|200px|''The fragment of RNA gene and IR GSP gene. '']]
===Evolution===
Os02g0669000 has two transcript variants: Os02t0669000-01,Os02t0669000-02,These transcripts are products of gene OS02g0669000.
Name Transcript ID Length(bp) Protein ID Length(aa) Biotype
P0684A08.8-201 Os02t0669000-01 1452 Oso2t0669000-01 376 Protein coding

Analyse and create the gene tree, conclude the information of the gene tree:
Number of genes: 367
Number of speciation nodes: 258
Number of duplication: 102
Number of ambiguous: 0
Number of gene split events: 6
[[File: li-Os02g0669000-Fig3.png|right|thumb|200px|''gene tree. '']]
We also has the detail information about Os02g0669000’s co-expressed gene tree(HyperTree),which can be found in link: http://ricefrend.dna.affrc.go.jp/HyperTree/index.php?id=11509&rank=3&mr=7
[[File: li-Os02g0669000-Fig4.png|right|thumb|200px|''HyperTree. '']]
Search on all the database and figure out that there is no differential expression were found for Os02g669000.
==Alignments and location of this gene==
Give the information of genomic alignments of Oryza sativa Japonica (Rice) ›
chromosome: IRGSP-1.0:2:27158293:27162781:-1(the onese with parenthesesare all exons)
GCCGCTCCGGTCGCGGCCCCTCCCTTTCCCAAAAGCAAACAAGGGATAGGTTTGCCGTTC(AGCCCCCACCCAGAGCCAGCGGACTGCACCTCGCAGTCCGGCATGGCTGGACAGATGCTACCGCCGATTGCGCTTGTTGCTGTGGCCATCTGTATCACCGCGGCGGCGGCGGCGAAGGTGCCGGCGATATACGTGTTCGGCGACTCCACGGCCGATGTCGGCAACAACAACTACCTGACCGGCGCCGCCGTGCCGCGGGCAAACTTCCCGCACAACGGCATTGACTTCCCCACGTCGCGGCCCACCGGCCGGTTCAGCAACGGGTACAACGGCGTCGACTTCTTGG)GTACGTACAGCTTCGCCGCCCGTCTTTCCTGTGCTGTATTGCCTCGCGACTCTGCTTGCCATGCGATGCGAGTATACTTCGGCACTTCGCGGTATAGTAGCGGCTGGCATCGTTGCATATCTGACAACCACGTATATAGCCGGTGATTGTTTCGTTTTTTCTGCATGTTTTTTGTCAACTTCGGCATTGCAAGTTTTGTAACGGTGCTAGAGTTGAGTAGGGGTGAAGACTGGAGACGATTAAGTCTTCGTCTCTATACTATTTCCGCGGTCCAATTACCGAAGGCAAGAAGTGGAAATTGCTTTGAAAACGGAGAGATTGTCGCATACTCCCTCCGTCCCAAAAAAAACCAACAAAGGTTGTGCCATACTACCTTTGTAAAAAAAAAAACTACGGAGAGTATGTTTAGATTTGTTTTTGTTTTATGGATCATATCTTATCTTAATATAACAATATTTTGAGAGGGAGTAAATAGAACATAAAAAATGTTTTGAAGAAGAACCCCATACTTCAGAACTGTGAAGTGCGCAACGCCAGGGCAGTGTGCCACTGTGGCGCACACATTCCAGAGGTCGCCTATGCTTAAATCGATAGTTGGCTCGTTGCTGCCCGAATTAAATTTGAAAATATATTGTTAATTCATTTTATTTTTAGAAATATTCGAGATTTATTTTTTAAAAAAATTATACCGTTGATCTTGCACAATCATTATGCGAATGTGAGGTGGTGCGACTTCGCGGGCGGTATCGCGCGAGACTGCGCGGTCTTGCGAAATGAAAGAACGATACCAGATTTCAAAATGGTTAATTAGTGATTAATTATTATGATTAGCAATTATTAAGTAATCATTAATTATTATTAGTTAAATAGTTAATTAGATCATTAGTCACTAACCAAATGGAGTTTGGGATGGTGTCGCTCTCTGCATGAGCGAGACCGCTCGTCATTCCTGCGACAGCGCGCGGTCGTGCGGTCGCCCCACGATACCGTCGTTGATGTCACCCCTATATTATTTTTATTTTCGGTTGTATGAGATCGACTGTATATTTCTATAAAAATAAATTACATCCTAAATATTTTTAAAAATAAAATTGAATGAACAGTATTTTTCAAATTTAATTCGCTGCTGCTCCACTTCCGCACGGGGCGCAGGCACACAGGCTTTGGGAAGCGATGCTTGCAAAGAGTGGCAGTGTCCGGCTGTTGGCAGGCGGGCGCGGCTGAATGGACCGATCACTCGAGACTTGGCGCTTGTCGCACATAAATGGCTGACCCGCTTGCATGTACTAGCCTTGATCCGGGCCACCACGCACTCATTGCATGTCCGAATTGGTACCAAAATCTACGGCACACATGACAAATCTACAGCAGACACGATCTGACGTACGGTCCAACATCGAGGTCATGCGATCGCCTTTTTAAGCGTTGGGACTGTTTGGGATGGAGATTGGGAGATAATGCCAAAATACGATAATGTGAGCAGCGCACGTATTTGAAAAATTCAAATACATTTTTTGCTGGCAAATGCCTTATAAAAGAAAATAAAGATTTAATCGTACGCGAAACATCAACATCGATAATAAAATTAATATTTGTAACTATTATATATATATATATATATTTTCCAATGTGATAGCATCTTAAGATTTCAGGTATGATGAATACAATACACACACATTTCGCTTTGTTCCGAGTCGATCTCGAAGATCCTATTACAATAATATTATAGGTGTTTTTCCTTTTTTTTATGTTGTCTAGATGCGGTTTTTCTACATCTAAATGTAGTTGCGCTTAGCGCGTCTGTAGCATAATCGTTTTCGCGATGCGTACTATATTTTCTTCTCATGGTATTGTTTTCCTCACCAAACCTGCGGTGGCTAGCCTAGGTGCTAAAAGGACTTTCTCAAAGCGTATGTCGTTCATTATATATTTTGACATGAGGGGTTTGGTCACTGGTGGGGAGGGTAGGGCAAGAAGCATGGCGGACCTAGGCTCATTGGCCATGGAAGAGACCAAGAAGGGCCTTGGCCATGCATTAAATAGAAGGATGGTGTTGTGGCCTAGAGGGAGAAGGAAGGTGTTTTCGTCATGTACTCTTCTTGCCTGATATGTAATGTTTCTCAGCTGAGAACCATTGCTTACATGTCGCTAACTTTTCCGATCAGGAATGGTTAAATATCGAATTCCAATCTATAATGCTTCTCCAACAGTTAGAGATTGATCAGTAAAGGTTTGACATATGGATGAATAATGGTTTCATGTTAGTTAGGCTTTATCGGGATCATTGCTTCTATAGTAGTAAGAGCGAGTACAATAGCAGGGTACAAGTCAGTTGTAAGCACATATGGAGAAGAGAAGAGAAGAGAGATAAAGAAGACGGGCTATAAACTTGTAGCCAGTTGCAGCATGGACTATAATACATTGTGCATATGAGAGGTGGGACCATATATTAATGGTGTAGTATATACTTATAAGTAACTATTGTATGAATGAGCTATTAGATTGGCTATAAATAAATTGAAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTAATAGTTAGTATTATTATGGGGAATGTGTAAGCCACGAGCACGGAGTAGCGCTTGCATTTTTGTTGTATATCTCGAGGATCACAATATTCTTCAACCTCTGTCAG(CTCTTAACATGGGATTCAGGCGCAGCCCCCCACCGTTCCTCGCCGTGGCTAACAAAACCAGCAACCCATTGTTCAGGGGGCTCCAGGGAACAAACTTTGCCTCTGCAGGATCAGGCATTCTCGACTCAACA)GTAAGCACGTCGGCATAAACCCAAAGCCACTGCACGATTTTTCGCTGAACACCGGCTGATGACGACGAAACACGTGTGTGCAG(GGTCAATCCATCATCCCAATGAGCAAGCAAGTGCAGCAATTCGCCGCCGTGCAACGCAACATCTCAGCACGCATCAGCCAGCAAGCCGCTGACACCGTGCTGTCGAGATCCCTGTTCCTGATCAGCACCGGCGGCAACGACATCTTCGCCTTCTTCTCCGCGAACAGCACGCCGTCGTCCGCGGAGATGCAGCGGTTCGTCACCAATCTCGTATCGCTCTACACAAATCATGTCAAG)GTAAAACCACCTTTCGCTTGTCTCTCATCACACAATTTTACGGCGAAGAAACACAAAGAATCTAACTGAAAGTTGACGCGTGAGCGCGGCAG(GATCTGTACGTTCTCGGGGCGAGGAAGTTCGCCGTGATCGACGTCCCGCCGATCGGGTGCTGCCCCTACCCGAGAAGCCTGCAACCGCTGGGCGCTTGCATCGACGTCCTCAACGAGCTGGCCCGTGGGTTGAACAAGGGAGTCAAGGACGCCATGCACGGCCTCAGCGTGAGCTTCAGCGGCTTCAAGTACTCCATCGGGAGCTCCCATGCCGTGGTGCAAAGCATCATGAAGCATCCCCAACGACTCG)GTATCTGAACATTCTACGCTTCAGTTTCGGATTTCTGACCAACGCAAGGTTCAGAGTTTCGTGACACGGCATTGGTGTGCAG(GATTCAAGGAGGTCACGACGGCTTGCTGCGGCTCCGGCAAGTTCAACGGCGAGTCCGGGTGCACGCCGAACGCCACGCTGTGCGACAACCGGCACGACTACCTCTTCTGGGACCTGCTGCACCCGACGCACGCCACGTCCAAGATCGCCGCCGCGGCCATATACAACGGCTCGGTCCGCTTCGCTGCGCCGATAAATTTCAGGCAGCTGGTGGATGACCAGCACTAGCTAGAGCGTGGCAGTGTCACCGTGTAACGTAGTACTACTAATTGTTGTACGTCGCCGACTATGTGTCTGTTTGTCTGGTGATATTGGTGCGTAGGATATGCTGGGCTGTGTTCATCAGTGGCTTGTGCTTTAGGCGGTGGTGTAGTTTGGATACACATACCAAAATGTCATCTCCGTTATTATTGTTGCCCTTGTTGGTATTTGCGGTGTTTGTGTTCCCAAGTCGGGATAATTTGAGCCTGGAGCGGATGAGCCAAGGACATCGCAGCTGCTTACTTGGTGCCAAATCGGAATACAAACTCTAAACATGTAGGTACATAC)ACATATGCCGGCC(ATGCCGTTCTTGGTCCCAGTTGGTATGTCCTCAGCTTGCGCCAGTTG)

To tell apart Os02g0669000 to other genes, we search on the Rice TOGO Browser and then find Os02g0669000 has 1 loci found in chromosome, this position is chr02 28045214-28049582.As is shown in the figure below:
[[File: li-Os02g0669000-Fig5.png|right|thumb|200px|''The position of Os02g0669000 loci. '']]

==References==
1."Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1725_H08."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
2."The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0669000|
Description = Lipolytic enzyme, G-D-S-L family protein|
Version = NM_001054223.1 GI:115447816 GeneID:4330264|
Length = 4369 bp|
Definition = Oryza sativa Japonica Group Os02g0669000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:28045214..28049582|
CDS = 28045535..28045761,28045844..28046093,28046186..28046422,28046506..28046636,28049297..28049540 |
GCID = <gbrowseImage1>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttggctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacaggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactag</cdnaseq>|
AA = <aaseq>MAGQMLPPIALVAVAICITAAAAAKVPAIYVFGDSTADVGNNNY LTGAAVPRANFPHNGIDFPTSRPTGRFSNGYNGVDFLALNMGFRRSPPPFLAVANKTS NPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTVLS RSLFLISTGGNDIFAFFSANSTPSSAEMQRFVTNLVSLYTNHVKDLYVLGARKFAVID VPPIGCCPYPRSLQPLGACIDVLNELARGLNKGVKDAMHGLSVSFSGFKYSIGSSHAV VQSIMKHPQRLGFKEVTTACCGSGKFNGESGCTPNATLCDNRHDYLFWDLLHPTHATS KIAAAAIYNGSVRFAAPINFRQLVDDQH</aaseq>|
DNA = <dnaseqindica>3822..4048#3490..3739#3161..3397#2947..3077#43..286#agcccccacccagagccagcggactgcacctcgcagtccggcatggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttgggtacgtacagcttcgccgcccgtctttcctgtgctgtattgcctcgcgactctgcttgccatgcgatgcgagtatacttcggcacttcgcggtatagtagcggctggcatcgttgcatatctgacaaccacgtatatagccggtgattgtttcgttttttctgcatgttttttgtcaacttcggcattgcaagttttgtaacggtgctagagttgagtaggggtgaagactggagacgattaagtcttcgtctctatactatttccgcggtccaattaccgaaggcaagaagtggaaattgctttgaaaacggagagattgtcgcatactccctccgtcccaaaaaaaaccaacaaaggttgtgccatactacctttgtaaaaaaaaaaactacggagagtatgtttagatttgtttttgttttatggatcatatcttatcttaatataacaatattttgagagggagtaaatagaacataaaaaatgttttgaagaagaaccccatacttcagaactgtgaagtgcgcaacgccagggcagtgtgccactgtggcgcacacattccagaggtcgcctatgcttaaatcgatagttggctcgttgctgcccgaattaaatttgaaaatatattgttaattcattttatttttagaaatattcgagatttattttttaaaaaaattataccgttgatcttgcacaatcattatgcgaatgtgaggtggtgcgacttcgcgggcggtatcgcgcgagactgcgcggtcttgcgaaatgaaagaacgataccagatttcaaaatggttaattagtgattaattattatgattagcaattattaagtaatcattaattattattagttaaatagttaattagatcattagtcactaaccaaatggagtttgggatggtgtcgctctctgcatgagcgagaccgctcgtcattcctgcgacagcgcgcggtcgtgcggtcgccccacgataccgtcgttgatgtcacccctatattatttttattttcggttgtatgagatcgactgtatatttctataaaaataaattacatcctaaatatttttaaaaataaaattgaatgaacagtatttttcaaatttaattcgctgctgctccacttccgcacggggcgcaggcacacaggctttgggaagcgatgcttgcaaagagtggcagtgtccggctgttggcaggcgggcgcggctgaatggaccgatcactcgagacttggcgcttgtcgcacataaatggctgacccgcttgcatgtactagccttgatccgggccaccacgcactcattgcatgtccgaattggtaccaaaatctacggcacacatgacaaatctacagcagacacgatctgacgtacggtccaacatcgaggtcatgcgatcgcctttttaagcgttgggactgtttgggatggagattgggagataatgccaaaatacgataatgtgagcagcgcacgtatttgaaaaattcaaatacattttttgctggcaaatgccttataaaagaaaataaagatttaatcgtacgcgaaacatcaacatcgataataaaattaatatttgtaactattatatatatatatatatattttccaatgtgatagcatcttaagatttcaggtatgatgaatacaatacacacacatttcgctttgttccgagtcgatctcgaagatcctattacaataatattataggtgtttttccttttttttatgttgtctagatgcggtttttctacatctaaatgtagttgcgcttagcgcgtctgtagcataatcgttttcgcgatgcgtactatattttcttctcatggtattgttttcctcaccaaacctgcggtggctagcctaggtgctaaaaggactttctcaaagcgtatgtcgttcattatatattttgacatgaggggtttggtcactggtggggagggtagggcaagaagcatggcggacctaggctcattggccatggaagagaccaagaagggccttggccatgcattaaatagaaggatggtgttgtggcctagagggagaaggaaggtgttttcgtcatgtactcttcttgcctgatatgtaatgtttctcagctgagaaccattgcttacatgtcgctaacttttccgatcaggaatggttaaatatcgaattccaatctataatgcttctccaacagttagagattgatcagtaaaggtttgacatatggatgaataatggtttcatgttagttaggctttatcgggatcattgcttctatagtagtaagagcgagtacaatagcagggtacaagtcagttgtaagcacatatggagaagagaagagaagagagataaagaagacgggctataaacttgtagccagttgcagcatggactataatacattgtgcatatgagaggtgggaccatatattaatggtgtagtatatacttataagtaactattgtatgaatgagctattagattggctataaataaattgaagctagtagttggctatactattaaacttgctctaatagttagtattattatggggaatgtgtaagccacgagcacggagtagcgcttgcatttttgttgtatatctcgaggatcacaatattcttcaacctctgtcagctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacagtaagcacgtcggcataaacccaaagccactgcacgatttttcgctgaacaccggctgatgacgacgaaacacgtgtgtgcagggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggtaaaaccacctttcgcttgtctctcatcacacaattttacggcgaagaaacacaaagaatctaactgaaagttgacgcgtgagcgcggcaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggtatctgaacattctacgcttcagtttcggatttctgaccaacgcaaggttcagagtttcgtgacacggcattggtgtgcaggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactagctagagcgtggcagtgtcaccgtgtaacgtagtactactaattgttgtacgtcgccgactatgtgtctgtttgtctggtgatattggtgcgtaggatatgctgggctgtgttcatcagtggcttgtgctttaggcggtggtgtagtttggatacacataccaaaatgtcatctccgttattattgttgcccttgttggtatttgcggtgtttgtgttcccaagtcgggataatttgagcctggagcggatgagccaaggacatcgcagctgcttacttggtgccaaatcggaatacaaactctaaacatgtaggtacatac</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054223.1 RefSeq:Os02g0669000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

2014-06-09T02:39:24Z

Sharry:

Please input one-sentence summary here.
Os02g0669000 gene is an protein coding gene
==Annotated Information==
===Function===
Please input function information here.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0669000|
Description = Lipolytic enzyme, G-D-S-L family protein|
Version = NM_001054223.1 GI:115447816 GeneID:4330264|
Length = 4369 bp|
Definition = Oryza sativa Japonica Group Os02g0669000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:28045214..28049582|
CDS = 28045535..28045761,28045844..28046093,28046186..28046422,28046506..28046636,28049297..28049540 |
GCID = <gbrowseImage1>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:28045214..28049582
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttggctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacaggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactag</cdnaseq>|
AA = <aaseq>MAGQMLPPIALVAVAICITAAAAAKVPAIYVFGDSTADVGNNNY LTGAAVPRANFPHNGIDFPTSRPTGRFSNGYNGVDFLALNMGFRRSPPPFLAVANKTS NPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISARISQQAADTVLS RSLFLISTGGNDIFAFFSANSTPSSAEMQRFVTNLVSLYTNHVKDLYVLGARKFAVID VPPIGCCPYPRSLQPLGACIDVLNELARGLNKGVKDAMHGLSVSFSGFKYSIGSSHAV VQSIMKHPQRLGFKEVTTACCGSGKFNGESGCTPNATLCDNRHDYLFWDLLHPTHATS KIAAAAIYNGSVRFAAPINFRQLVDDQH</aaseq>|
DNA = <dnaseqindica>3822..4048#3490..3739#3161..3397#2947..3077#43..286#agcccccacccagagccagcggactgcacctcgcagtccggcatggctggacagatgctaccgccgattgcgcttgttgctgtggccatctgtatcaccgcggcggcggcggcgaaggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccgccgtgccgcgggcaaacttcccgcacaacggcattgacttccccacgtcgcggcccaccggccggttcagcaacgggtacaacggcgtcgacttcttgggtacgtacagcttcgccgcccgtctttcctgtgctgtattgcctcgcgactctgcttgccatgcgatgcgagtatacttcggcacttcgcggtatagtagcggctggcatcgttgcatatctgacaaccacgtatatagccggtgattgtttcgttttttctgcatgttttttgtcaacttcggcattgcaagttttgtaacggtgctagagttgagtaggggtgaagactggagacgattaagtcttcgtctctatactatttccgcggtccaattaccgaaggcaagaagtggaaattgctttgaaaacggagagattgtcgcatactccctccgtcccaaaaaaaaccaacaaaggttgtgccatactacctttgtaaaaaaaaaaactacggagagtatgtttagatttgtttttgttttatggatcatatcttatcttaatataacaatattttgagagggagtaaatagaacataaaaaatgttttgaagaagaaccccatacttcagaactgtgaagtgcgcaacgccagggcagtgtgccactgtggcgcacacattccagaggtcgcctatgcttaaatcgatagttggctcgttgctgcccgaattaaatttgaaaatatattgttaattcattttatttttagaaatattcgagatttattttttaaaaaaattataccgttgatcttgcacaatcattatgcgaatgtgaggtggtgcgacttcgcgggcggtatcgcgcgagactgcgcggtcttgcgaaatgaaagaacgataccagatttcaaaatggttaattagtgattaattattatgattagcaattattaagtaatcattaattattattagttaaatagttaattagatcattagtcactaaccaaatggagtttgggatggtgtcgctctctgcatgagcgagaccgctcgtcattcctgcgacagcgcgcggtcgtgcggtcgccccacgataccgtcgttgatgtcacccctatattatttttattttcggttgtatgagatcgactgtatatttctataaaaataaattacatcctaaatatttttaaaaataaaattgaatgaacagtatttttcaaatttaattcgctgctgctccacttccgcacggggcgcaggcacacaggctttgggaagcgatgcttgcaaagagtggcagtgtccggctgttggcaggcgggcgcggctgaatggaccgatcactcgagacttggcgcttgtcgcacataaatggctgacccgcttgcatgtactagccttgatccgggccaccacgcactcattgcatgtccgaattggtaccaaaatctacggcacacatgacaaatctacagcagacacgatctgacgtacggtccaacatcgaggtcatgcgatcgcctttttaagcgttgggactgtttgggatggagattgggagataatgccaaaatacgataatgtgagcagcgcacgtatttgaaaaattcaaatacattttttgctggcaaatgccttataaaagaaaataaagatttaatcgtacgcgaaacatcaacatcgataataaaattaatatttgtaactattatatatatatatatatattttccaatgtgatagcatcttaagatttcaggtatgatgaatacaatacacacacatttcgctttgttccgagtcgatctcgaagatcctattacaataatattataggtgtttttccttttttttatgttgtctagatgcggtttttctacatctaaatgtagttgcgcttagcgcgtctgtagcataatcgttttcgcgatgcgtactatattttcttctcatggtattgttttcctcaccaaacctgcggtggctagcctaggtgctaaaaggactttctcaaagcgtatgtcgttcattatatattttgacatgaggggtttggtcactggtggggagggtagggcaagaagcatggcggacctaggctcattggccatggaagagaccaagaagggccttggccatgcattaaatagaaggatggtgttgtggcctagagggagaaggaaggtgttttcgtcatgtactcttcttgcctgatatgtaatgtttctcagctgagaaccattgcttacatgtcgctaacttttccgatcaggaatggttaaatatcgaattccaatctataatgcttctccaacagttagagattgatcagtaaaggtttgacatatggatgaataatggtttcatgttagttaggctttatcgggatcattgcttctatagtagtaagagcgagtacaatagcagggtacaagtcagttgtaagcacatatggagaagagaagagaagagagataaagaagacgggctataaacttgtagccagttgcagcatggactataatacattgtgcatatgagaggtgggaccatatattaatggtgtagtatatacttataagtaactattgtatgaatgagctattagattggctataaataaattgaagctagtagttggctatactattaaacttgctctaatagttagtattattatggggaatgtgtaagccacgagcacggagtagcgcttgcatttttgttgtatatctcgaggatcacaatattcttcaacctctgtcagctcttaacatgggattcaggcgcagccccccaccgttcctcgccgtggctaacaaaaccagcaacccattgttcagggggctccagggaacaaactttgcctctgcaggatcaggcattctcgactcaacagtaagcacgtcggcataaacccaaagccactgcacgatttttcgctgaacaccggctgatgacgacgaaacacgtgtgtgcagggtcaatccatcatcccaatgagcaagcaagtgcagcaattcgccgccgtgcaacgcaacatctcagcacgcatcagccagcaagccgctgacaccgtgctgtcgagatccctgttcctgatcagcaccggcggcaacgacatcttcgccttcttctccgcgaacagcacgccgtcgtccgcggagatgcagcggttcgtcaccaatctcgtatcgctctacacaaatcatgtcaaggtaaaaccacctttcgcttgtctctcatcacacaattttacggcgaagaaacacaaagaatctaactgaaagttgacgcgtgagcgcggcaggatctgtacgttctcggggcgaggaagttcgccgtgatcgacgtcccgccgatcgggtgctgcccctacccgagaagcctgcaaccgctgggcgcttgcatcgacgtcctcaacgagctggcccgtgggttgaacaagggagtcaaggacgccatgcacggcctcagcgtgagcttcagcggcttcaagtactccatcgggagctcccatgccgtggtgcaaagcatcatgaagcatccccaacgactcggtatctgaacattctacgcttcagtttcggatttctgaccaacgcaaggttcagagtttcgtgacacggcattggtgtgcaggattcaaggaggtcacgacggcttgctgcggctccggcaagttcaacggcgagtccgggtgcacgccgaacgccacgctgtgcgacaaccggcacgactacctcttctgggacctgctgcacccgacgcacgccacgtccaagatcgccgccgcggccatatacaacggctcggtccgcttcgctgcgccgataaatttcaggcagctggtggatgaccagcactagctagagcgtggcagtgtcaccgtgtaacgtagtactactaattgttgtacgtcgccgactatgtgtctgtttgtctggtgatattggtgcgtaggatatgctgggctgtgttcatcagtggcttgtgctttaggcggtggtgtagtttggatacacataccaaaatgtcatctccgttattattgttgcccttgttggtatttgcggtgtttgtgttcccaagtcgggataatttgagcctggagcggatgagccaaggacatcgcagctgcttacttggtgccaaatcggaatacaaactctaaacatgtaggtacatac</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054223.1 RefSeq:Os02g0669000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]