http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Wurui 2026-08-27T21:06:18Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170436 2014-05-21T09:19:00Z

<p>Wurui: /* Expression */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year&lt;ref name=&quot;ref5&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell 12:2473-2483.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight(2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays 26:363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref4&quot;&gt;Ryosuke Hayama,Shuji Yokoi,Shojiro Tamaki, et al.(2003). Adaptation of photoperiodic control pathways produces short-day flowering in rice.&quot; NATURE 422: 719-725.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref5&quot;&gt;Shoko Kojima,Yuji Takahashi,Yasushi Kobayash.et al.(2002). &quot;''Hd3a'', a Rice Ortholog of the ''Arabidopsis FT'' Gene, Promotes Transition to Flowering Downstream of ''Hd1'' under Short-Day Conditions.&quot; Plant Cell Physiol 43(10): 1096-1105.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170435 2014-05-21T09:17:20Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year&lt;ref name=&quot;ref5&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell 12:2473-2483.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight(2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays 26:363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref4&quot;&gt;Ryosuke Hayama,Shuji Yokoi,Shojiro Tamaki, et al.(2003). Adaptation of photoperiodic control pathways produces short-day flowering in rice.&quot; NATURE 422: 719-725.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref5&quot;&gt;Shoko Kojima,Yuji Takahashi,Yasushi Kobayash.et al.(2002). &quot;''Hd3a'', a Rice Ortholog of the ''Arabidopsis FT'' Gene, Promotes Transition to Flowering Downstream of ''Hd1'' under Short-Day Conditions.&quot; Plant Cell Physiol 43(10): 1096-1105.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170434 2014-05-21T09:09:45Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year&lt;ref name=&quot;ref5&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight(2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26:363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170433 2014-05-21T09:08:10Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year&lt;ref name=&quot;ref5&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight(2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26:363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170432 2014-05-21T09:06:33Z

<p>Wurui: /* Knowledge Extension */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year&lt;ref name=&quot;ref5&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight. (2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26: 363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170431 2014-05-21T09:06:18Z

<p>Wurui: /* Evolution */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed&lt;ref name=&quot;ref4&quot; /&gt;.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight. (2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26: 363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170430 2014-05-21T09:05:12Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time&lt;ref name=&quot;ref3&quot; /&gt;.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight. (2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26: 363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170429 2014-05-21T09:03:36Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight. (2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26: 363-373.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170428 2014-05-21T09:02:28Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell.12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Jo Putterill, Rebecca Laurie,and Richard Macknight. (2003). &quot;It’s time to flower:the genetic control of flowering time.&quot; BioEssays.26: 363-373.&lt;/ref&gt;<br /> <br /> <br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170427 2014-05-21T08:57:32Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway&lt;ref name=&quot;ref2&quot; /&gt;.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell 12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> <br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170426 2014-05-21T08:55:54Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Masahiro Yano,Yuichi Katayose,Motoyuki Ashikari(2000). &quot;''Hd1'',a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene ''CONSTANS''&quot;The Plant Cell 12:2473-2483.&lt;/ref&gt;&lt;/references&gt;<br /> <br /> &lt;ref name=&quot;ref3&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170395 2014-05-21T08:15:27Z

<p>Wurui: /* Annotated Information */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170393 2014-05-21T08:11:40Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170389 2014-05-21T08:05:49Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes under SD conditions in rice.&quot; Planta 228:355-365.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170376 2014-05-21T07:56:17Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Soon-Kap Kim · Choong-Hyo Yun · Jeong Hwan Lee ·Yun Hee Jang · Hyo-Young Park · Jeong-Kook Kim(2008). &quot;''OsCO3'', a ''CONSTANS-LIKE'' gene, controls Xoweringby negatively regulating the expression of FT-like genes<br /> under SD conditions in rice.&quot; Plant Cell 21(4): 1095-1108.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170368 2014-05-21T07:45:25Z

<p>Wurui: </p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Oikawa, T. and J. Kyozuka (2009). &quot;Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice.&quot; Plant Cell 21(4): 1095-1108.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170366 2014-05-21T07:44:30Z

<p>Wurui: /* References */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Oikawa, T. and J. Kyozuka (2009). &quot;Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice.&quot; Plant Cell 21(4): 1095-1108.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170364 2014-05-21T07:40:57Z

<p>Wurui: /* Labs working on this gene */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea<br /> *Genomics Division,National Institute of Agricultural Biotechnology,Suwon 441-707, South Korea<br /> *National Institute of Agrobiological Resources, Tsukuba, Ibaraki 305-8602, Japan<br /> *Bio-oriented Technology Research Advancement Institution, Omiya, Saitama 331-8537, Japan<br /> *Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki 305-0854, Japan<br /> *Department of Biology, Faculty of Science, Toyama University, Toyama, 930-8555, Japan<br /> *School of Biological Sciences, University of Auckland, Auckland,New Zealand<br /> *Department of Biochemistry, University of Otago, Dunedin,New Zealand<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170363 2014-05-21T07:34:47Z

<p>Wurui: /* Labs working on this gene */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *S.-K. Kim·J. H. Lee· Y.H.Jang·H.-Y. Park·J.-K. Kim.Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea e-mail: jkkim@korea.ac.kr.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170362 2014-05-21T07:32:04Z

<p>Wurui: /* Labs working on this gene */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> *S.-K. Kim · J. H. Lee · Y. H. Jang · H.-Y. Park · J.-K. Kim.Plant Signaling Network Research Center,School of Life Sciences and Biotechnology Korea University, Seoul 136-701, South Korea e-mail: jkkim@korea.ac.kr.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170360 2014-05-21T07:29:49Z

<p>Wurui: /* Evolution */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> the overexpression of ''OsCO3'' signiWcantly delayed flowering under SD conditions.''OsCO3'' overexpression did not affect flowering in rice, indicating that ''OsCO3'' is involved in the regulation of flowering time in a day-length dependent manner. Thus, these results suggest that ''OsCO3'' is a negative regulator in the photoperiodic control of flowering in rice. Given that overexpression of ''OsCO3'' and ''Hd1'', which belong to the same ''OsCOL'' family group,resulted in opposite effects on flowering time, an important question is how these two genes play opposite roles under SD conditions in rice. One possibility is that ''OsCO3'' and ''Hd1'' may form different complexes with their own HAPs, thereby inducing opposite effects on flowering time when they are overexpressed.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170357 2014-05-21T07:23:05Z

<p>Wurui: /* Knowledge Extension */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ===Knowledge Extension===<br /> Apart from its fundamental role in plant development, the trait of flowering time is of great importance to plant breeders and commercial growers as it plays a key role in plant adaptation to growing regions. Ultimately, knowledge of flowering-time genes and how they work should help with the selection of novel plant varieties with altered flowering times. Early-flowering varieties might allow multiple rounds of cropping in a single season, varieties with delayed flowering may increase yields in crops such as sugar beet, pasture grasses, or forestry where vegetative growth is desired, while ornamentals would be induced to flower on command on important dates of the year.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = 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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170356 2014-05-21T07:21:41Z

<p>Wurui: </p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ===Knowledge Extension===<br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170354 2014-05-21T07:19:13Z

<p>Wurui: /* Expression */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg]]<br /> <br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170349 2014-05-21T07:12:59Z

<p>Wurui: /* Expression */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> [[File:Fig4.jpg|center|550px]]<br /> '''Fig3.The circadian oscillations of spliced and unspliced OsCO3 mRNAs'''<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig4.jpg&diff=170346 2014-05-21T07:08:10Z

<p>Wurui: </p> <hr /> <div></div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170341 2014-05-21T07:04:44Z

<p>Wurui: /* Expression */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> The rice orthologues of the two key regulators of flowering time,''CO'' and ''FT'',were recently shown to be important inthe photoperiodic control of flowering in rice.The rice ''Hd1(Se1)''gene, which is an orthologue of the ''Arabidopsis CO'' gene, was required for the suppression of flowering under LD conditions and for the promotion of flowering under SD conditions.Furthermore,the rice ''Hd3a'' gene, an orthologue of the Arabidopsis FT gene, was shown to be an activator of flowering in rice.''CO'' controls the flowering time by integrating signals from the circadian clock and light to regulate ''FT'' expression.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170328 2014-05-21T06:52:26Z

<p>Wurui: /* Expression */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> ''CONSTANS (CO'') encodes a zinc finger protein and promotes flowering under LD conditions.Overexpression of ''CO'' was sufficient to promote early flowering independent of photoperiod.''FLOWERING LOCUS T (FT)'', which encodes a protein similar to phosphatidylethanolamine-binding protein, also promotes flowering under LD conditions,and is a direct target of ''CO''.the regulation of transcription by the circadian clock and, possibly, of protein stability by light conditions result in differential ''CO'' activity, which in turn results in different levels of ''FT'' mRNA under SD and LD conditions. Thus, ''CO'' acts between the circadian clock and promotion of flowering by ''FT''.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170325 2014-05-21T06:40:50Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ''CONSTANS'' is a member of 16 ''CO''-Like (''COL'') genes that have been identified by Arabidopsis genome analysis.This family has been divided into three subgroups on the basis of variations within the B-box region. The Wrst subgroup (''CO'' and ''COL1'' to ''COL5'') has two B-box genes, the second (''COL9'' to ''COL15'') has one ''CO''-like B-box and one different zinc-Wnger domain, and the third group (''COL6'' to ''COL8'' and ''COL16'') has one B-box gene. Several ''CO'' mutations have been observed in these B-boxes, revealing that conservation of these regions is required for proper ''CO'' function. However, it appears that ''CO'' function may not be conserved in other COL proteins which contain B-boxes that are closely related to those of CO. The overexpression of ''COL1'' and ''COL2'' does not regulate flowering time.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170324 2014-05-21T06:32:46Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> '''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' Fig2.The Arabidopsis long-day pathway and how it has been modified in rice'''<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170323 2014-05-21T06:31:40Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> ''''''Fig1.Cross talk between flowering-time pathways in ''Arabidopsis'' '''Fig2.The Arabidopsis long-day pathway and how it has been modified in rice''''''<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170322 2014-05-21T06:27:31Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> [[File:Fig1.jpg|left|400px]][[File:Fig2.jpg|center|300px]]<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170321 2014-05-21T06:17:44Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Figa.jpg|right|300px]]<br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Figa.jpg&diff=170320 2014-05-21T06:17:03Z

<p>Wurui: Cross talk between flowering-time pathways in Arabidopsis.</p> <hr /> <div>Cross talk between flowering-time pathways in Arabidopsis.</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig1.jpg&diff=170319 2014-05-21T06:06:12Z

<p>Wurui: uploaded a new version of &amp;quot;File:Fig1.jpg&amp;quot;: Cross talk between flowering-time pathways in Arabidopsis.</p> <hr /> <div></div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig3.jpg&diff=170318 2014-05-21T05:48:25Z

<p>Wurui: </p> <hr /> <div></div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig2.jpg&diff=170317 2014-05-21T05:47:54Z

<p>Wurui: </p> <hr /> <div></div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Fig1.jpg&diff=170316 2014-05-21T05:47:03Z

<p>Wurui: </p> <hr /> <div></div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170310 2014-05-21T05:35:55Z

<p>Wurui: /* Function */</p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> <br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170303 2014-05-21T05:24:27Z

<p>Wurui: </p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170300 2014-05-21T05:23:32Z

<p>Wurui: </p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice, the timing of this transition affects the timing of heading,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' specially represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170298 2014-05-21T05:21:30Z

<p>Wurui: </p> <hr /> <div>The transition of the apical meristem from vegetative to reproductive growth is a critical event in the life cycle of rice, the timing of this transition affects the timing of heading,the ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathway, the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' speciWcally represses flowering in rice under SD conditions.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170276 2014-05-21T04:53:54Z

<p>Wurui: </p> <hr /> <div><br /> The ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathways .the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' speciWcally represses flowering in rice under SD conditions, independent of ''Hd1, Early heading date 1 (Ehd1), OsMADS51,'' and ''OsMADS50''.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170273 2014-05-21T04:52:20Z

<p>Wurui: </p> <hr /> <div><br /> The ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathways .the rice ''COL-like'' gene,''OsCO3'', in the photoperiodic control of flowering time.''OsCO3'' speciWcally represses flowering in rice under SD conditions, independent of ''Hd1, Early heading date 1 (Ehd1), OsMADS51,'' and ''OsMADS50''.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170268 2014-05-21T04:46:14Z

<p>Wurui: </p> <hr /> <div><br /> The ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathways .<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=170267 2014-05-21T04:45:57Z

<p>Wurui: </p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> The ''CONSTANS (CO)'' gene is a central regulator in the photoperiod pathway, which is one of the floral pathways .<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=169926 2014-05-20T03:18:42Z

<p>Wurui: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> aaaaaaaaaaaaaaaa<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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tatatcttttttactagaagagatttgtattgtgtttcaaaaacatgaccggttaaaatatcaccgaagatttgcgtcgatttaaattatataatattttatcaatttatccctataaaacatgaaacttcttccttgactacataaacaactaattaactgcgtaaataagtcatggatatctctaaaggtagctagagaagaaaggaaatgtgatctttgattttttttctctctctccgatacagattgaatcaatcgctaaattaacagggtagccatgatttacgttttcatttactcatctcctatcatgttacaataattttattccgtacctgacccctccgttgatccacctttaagtacctctaagtacctcgcaaacaccgtaaaagatctctaggaattattgtgtagagtattttaaatcacatacaagtgtgtcacatcatcacgtactaggaattattttatagagtatcttaaatttcatgtaaacatgatatatcatttataattttgttgtatttttagaatttaatatgcgagcaatgtgaaattatcatctccatatcattatcacattatttaaacatatatatctatcttttatattatataaaatatgcattcatccacatatcctcagcaaaacgcggaatatcaaaactagtatagtatgcatttcaaccttgttcgacgatcgctcaggtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctagcgagcagcttggccgcacgcctggaagacaatcaaagaagctcaggaatgaatatattctcccactgtatagtacatcttggttgcttagctatatatatatatatatatatatatatatatgtataattcgccgaatcgcctctaaatttgtgggaggtatgaggcttcagctgtaggtatatatagatgctagaaagatgctccttgtaaaattgtgcaggagtaaatgtaatcatgtagtcatccctccttctccaatcctttacaatacatttctgtttttttattcagcttaaaaactacgttttgttttttctcccgat&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

Wurui https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0240200&diff=169925 2014-05-20T03:11:53Z

<p>Wurui: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> The photoperiod is an important environmental stress that determines flowering time. The ''CONSTANS(CO)'' and ''Heading date 1 (Hd1)'' genes are known to be central integrators of the photoperiod pathway in ''Arabidopsis'' and rice, respectively. Although they are both members of the ''CONSTANS-LIKE (COL)'' family and have two B-boxes and a CCT domain, rice also possesses novel ''COL'' genes that are not found in ''Arabidopsis''. Here, we demonstrate that a novel ''COL'' gene, ''OsCO3'', containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice. The circadian expression pattern of ''OsCO3'' mRNA oscillated in a different phase from ''Hd1'' and was similar to that of ''OsCO3'' pre-mRNA, suggesting that the diurnal expression pattern of ''OsCO3'' transcripts may be regulated at the transcriptional level. Overexpression of ''OsCO3'' specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants. The expression of ''Hd3a'' and ''FTL'' decreased in these transgenic plants,whereas the expression of ''Hd1'', ''Early heading date 1(Ehd1)'', ''OsMADS51'', and ''OsMADS50'' did not significantly change. ''OsCO3'' primarily controls flowering time under SD conditions by negatively regulating ''Hd3a'' and ''FTL'' expression, independent of the SD-promotion pathway.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os09g0240200|<br /> Description = Zinc finger, CONSTANS-type domain containing protein|<br /> Version = NM_001069178.1 GI:115478095 GeneID:4346474|<br /> Length = 16382 bp|<br /> Definition = Oryza sativa Japonica Group Os09g0240200, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br /> AP = Chromosome 9:3613793..3630174|<br /> CDS = 3614118..3614501,3629527..3630150|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008402:3613793..3630174<br /> source=RiceChromosome09<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtttcgatgtcatcgctggagaacatgagcacggtcccagactgcggtgtgccagacatcaccacctcctacttgaggtcatccaagagcaccatcgacctcttcacggcagcagctggctcccctgtggcggcgcacagcataatgtcgccaccgcagttcatgggcgccattgacagggaggccagggtgcaccggtacagggagaagaggaagacgaggcggttcgagaagaccatcaggtacgcgtcgcggaaggcgtatgccgagacccggccgaggatcaagggacgcttcgccaagcgcagcgacaccgaccttgaggtcgaccagtacttctccaccaccgccgactccagctgcggcgtcgtgcccacgttctag&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MLKLEPEFPGLPQRCDSCRSAPCAFYCLADSAALCATCDADVHS VNPLARRHRRVPMGVVAAPGAGGAFVVRPAGGVNSSWPIREGRRCDYDDDDADAAGEE DEEATSWLLFDPLKDSSDQGLPPFGDALVADFLNLGGGAGEKEDASSSKDCSSSHGKS SEGSHEFAVPGEPVPERQGFGAVSMDITDYDASNFRRGYSFGASLGHSVSMSSLENMS TVPDCGVPDITTSYLRSSKSTIDLFTAAAGSPVAAHSIMSPPQFMGAIDREARVHRYR EKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSDTDLEVDQYFSTTADSSCGVVPT F&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;15674..16057#25..648#acgtcttcgcacaggcacccagccatgctgaagttggagccggagttccccggcctgccgcagcggtgcgactcgtgccggtcggcgccgtgcgcgttctattgcctcgccgattcggcggcgctctgtgccacgtgcgacgctgacgtgcactccgtcaacccgctggcacgccgccaccgccgcgtaccaatgggcgtggtggctgcccccggcgccgggggagccttcgtcgtccgccctgcaggcggtgtcaactcctcctggccaatccgagagggcaggaggtgcgactacgacgatgacgacgccgacgccgctggggaggaagacgaagaggcgacgtcgtggcttctgttcgacccgctcaaggactcctcggatcaggggctgccgccgttcggcgacgcgctggtggccgacttcctcaacctcggcgggggcgccggggagaaggaggacgcgtcgtcgagcaaggactgcagcagcagccacgggaagagcagcgagggcagccacgagttcgccgtgcccggcgagcccgtaccggagcgccagggcttcggggcggtgagtatggacattaccgactacgacgcctccaatttcaggcgcgggtacagctttggcgcatcgctcggccacagcgtaagtcttaatgttttttcttacaatcttacacgaattttcatcaatgaattatctacactagtaacttacccgtgctaactatacgataacattaaaccaaagactatcatatgttaacacaatcaaaaatataattagataaatttaaaactcacgtaaagattgaacaatagagagttgttatattttaaagacaaccatgtgcgcaaaatagcatggtaacctttatatcttcactcaaaaccatctattttttgatgcactgagaaattcttataagtaaataaatactatttgctcatgatatgcaaaataactacaagcaactcttattgaaaatttttccatgataattcactgacatattggtcatggatccacatgtcaatgagagaatggaggtcaactttcggagtcaaataaagattttatcccacaatttttggataattaaattatcaaaattacattatcattcataaataaaatgagttgggtaaaaggaaacgagaataccgaacacccatccatccaggtgtgacttcaagagttcaagaccaagaccaacagaaaaatgcattctcaagctcaaaccaaaaagataaagagaaacatagcactactagaaaaataatttttcatagcgttaccctattatttttctggcggttatacgcgaaaaccgcccacaaaaacgtaacaaggggtggggggctacagaccgccagcgaaaatagatttttgtcggcggccgagttaaaatccaccgtccacctattagaatccgctgccgcgaaaaatccacctattccacgcgcttctccaactctctcccttctctctccgcctatctacccaccgttctccctcctttctctgcctctccatccagccgccagcgacgacgaagctcgtggcgcgcgcatcggtcgacgggcggagcactggcggcttggttgacgggcggagcaccggcgactcgcggggcggcggatccggcggaggcgactcgcggggcggcggatccggcggcgacgactcacggggcggtggatccggcggaggcgactcgcggggcggcagatccaacggcggcgactcgcgggggggcgtcgcccagcggcggcgactcgcggggcggcgcggtgcggcgagtccggcgacggtgacaaggagaaggggcgactcgtggggcggcgtcgcccgacgaatccaacggcggcgactagctttgcgaggcggcaggtctgattcgcaccggtggatggcagctcggcgacgaggtgcagtggctgggctctacggcagtgacccacctcctcgtcgaccttgggcctccctgtcgccggcgatggaggatgggcacgccggtgattttgattttttttttcaaaatctggattccaattttcttcttttttaatcaaaaaatattttcactggcgggtgttttatcttccgacagcgaaaaccgaaatttgtgctagcggttgtcttagccagccgccagtgaagacaattttcgctggcggttgtgttaagccggccgccagcaaaaatcgatcttctctaacggtttgtcgctgctagcgtagatgctacatcttaactagcctttactttgtggcggctccgatatccgccagcaaaaacctaaaatggccgccacgaaagattgttttcgtagtagggtagaatacaatctaatgatccatcgcctgctaggctataagttatctattcgcctcttcacttctctttcagcaagcatacttatatggtgaagaaatgagacggtggagttatagattcagcaggaaaaaaaggattcaagagacaaccatactcataatttccataataggaggctcttgttttagccacgacgtacatcatactctgcttcgtcttcactccactttcacgatcctcaccgggctatttgttcatccaccacagcagagcatacctttgatctttcagttttgaaaaataatgttattcatgcatataagtagtaagtggatgattatggatgcttacactggaaatttgaaggactgggtgcttgccgtggtatatctgactggatgtagatgttgccaatatgaccggaggtccacacttgattgcccatgatgatacctaagagagcacggcggactgatcaaatgatcattacctgacatgaaagaaattatctgcacttaagaggaggcacaattcacactgactgattaaagttgttaatcagaggagttgtgttccaaattagaatgattctggtactaacagacgttacaaaattttgcaactctctctgatatcatgttaggactctgtctcaggtcaaaaacaattatgctactcacagattttgtacaaaatttagccctgacttagagttaatactccaattgtgccaaattaaactctaaatcaaattatcattacctaaaaagaaagaaattatttgcataaagaggagacataattcaaacctaactgatcaaagtttccaaccagaggagagtgcttgaatttaaaacaatgccagtactaactcagtgatcatgctctaaaccagaggtctctgtttcaaatcagaacaattctgttactcacagattttgtacaaaaatttagccctaaccaggaagtcccatagcaaacaggagaggttcgctgctttccttggaagtgccatagcaaacctgttacatttatatattctgaattcctcaaaggaattttgaaagcaagctgccagcatgctcaatattaaaaaattcaggttactttaaatgcttatctttatacaattcaaacttttataaaacatagaaaactcccagtttccattgtacaattcaaaaactattaaccatttagtaataaattcacttaaccactcatataagaagcaaagtcaagggacaataacaatgtatatttcagtgttctaaatttcagacggcccaatgcatattaaaaacaactatgccatttttctatttccatttcagcacagaaatatatacttaatataggagtacatagtagaaatacatagatatacatagttagatatggcaggtaccaatcaacaatcatccgataaacatgtagaaatgcactcctaactgcattgtggatgctgctggggaagtcaaccaagcatcaactatggacctttgtaagttcttccgaacaaaagatgcttcgtctgtacgaccataaccgtcaaacacctgtaaaatacccctaaaaatttgaaaccattaaccatctgctgtgaaaactcgtactgaacaaaaaaaaatgatgaacttaacatctcacatatgaatgttacttcagaaatttactgctggtgatgttgggtcccggtttgagcaaagtaatttattcccaaatgttcagtgttataattttattgcctagtttcaagtgctctaaactcacagattgtttacatgcatcaacagaatttgagttggaaattgtcagtgttgaacaaaaaaaaaactaaccttttgattgactggaaatgaaactcttgtgagtctcaatttccctcaatttattgcttctgattaactggaaactgaactctagtgagtgttaaattcccttaattgattgtaccactcaggaagactatctgcctacgtgcagtttgattcccaaatatgttcagaaccatacaaagacctaacccatcaatcctgccaagtctttccaatttcccacaagccctgtattgcatctgcacgccatctcatctaatctcacatcctctcacaaaataacagcaaaatagtccgggcaacagctgctgctgcggctgcttttgttgtgggcactaaaaacaaattggttattttcaagtctaagccattgagggagttgttttggttggtttgctcggtatttcacatgcactattttcgcaaatttgcatttgaactgtaatggttgaaggaacgggatcgagcgatgcttaccttgtccccagcgtggtcgagaggattccggtggtggcttaacagagagcacatggcgcaggatccttggcggcgcgagggagtcggcggtggcgtcgcgacgcagtcggcaagaggggatgccggcggcgtcgatttggaggcgtgtgagggggtgccaacagcgtcaaactggaggcgggaattgatggcgacgcgatgccgggcgtcggcgtcgtcgcacgcgaaggaggggcgtcggaatctatggcgcccggcggctgctgtgatgcggttggtgttgggatacgcgtaggctacg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/> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069178.1 RefSeq:Os09g0240200]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 9]]<br /> [[Category:Chromosome 9]]</div>

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