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2026-05-24T10:28:13Z
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https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os11g0446000&diff=168405
Os11g0446000
2014-05-12T08:14:01Z
<p>Xialin: /* Expression */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity. Loss of function of RSS3 only moderately inhibits cell elongation under normal conditions, but it provokes spontaneous root cell swelling, accompanied by severe root growth inhibition, under saline conditions.<br />
<br />
===Expression===<br />
RSS3 is preferentially expressed in the root tip and forms a ternary complex with class-C basic helix-loop-helix (bHLH) transcription factors and JASMONATE ZIM-DOMAIN proteins, the latter of which are the key regulators of jasmonate (JA) signaling. The mutated protein arising from the rss3 allele fails to interact with bHLH factors, and the expression of a significant portion of JA-responsive genes is upregulated in rss3.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os11g0446000|<br />
Description = Conserved hypothetical protein|<br />
Version = NM_001074358.2 GI:297611767 GeneID:4350435|<br />
Length = 4813 bp|<br />
Definition = Oryza sativa Japonica Group Os11g0446000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|<br />
AP = Chromosome 11:16608816..16613628|<br />
CDS = 16611100..16611258,16612560..16613384|<br />
GCID = <gbrowseImage1><br />
name=NC_008404:16608816..16613628<br />
source=RiceChromosome11<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008404:16608816..16613628<br />
source=RiceChromosome11<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgccgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctggcccccttgcttttggggggaagagaccttattactgctactactacacacctcattaatcacttgcaaaaacaagctcagcacactgccacagcaacagtgataccggaggacctgcacttcgtgctgcggatgcggcacatgttcgagtcgctcggctaccagtcgggcttcttcctctcccagctcttctcctcctcgcgggggacctcgccgtcgccgtcgtcgttcccgcttaagcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggccgcgttccacccgtcgtcccggccaatgccgcccttccccggcggcggcaaggatgagagccacctgttccatctcccgccggcggcggcggccaagcagccgcagcacatggacgagcaccaccaccaccagcagcagccgatggcggcgccgcagcagcacggcggggaggcgcccgagggcgacctgaaatggcccaacgggctgtcgttcttcaccgcgctcaccggccggaccgaggacgcgaagttcctcttcggcggcggcggaggcggcggcgcggacgacgggagcaagacggcggcggcggcgcaggacgcggggcacggcggcgcggagaacgtggaggagtacctgagcctggagagccactccaacaaggcgaggaggatggagagcgcccagagcaccaagttcaagaggagcttcacgttgccggcgaggatgagctcgtccaccacgtcgacgtccccgtcggtgtcggcgtcgacggcgccggcgccgccgcagcagcagcaagggatggagtacaggggcccacacgagggcggcgtctactcggacctaatggagacgttcttggagtag</cdnaseq>|<br />
AA = <aaseq>MPYVPSPALSSFLFLQSPLAPLLLGGRDLITATTTHLINHLQKQ AQHTATATVIPEDLHFVLRMRHMFESLGYQSGFFLSQLFSSSRGTSPSPSSFPLKQQQ PPPPQLFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMPPFPGGGKDESHLFHLPPA AAAKQPQHMDEHHHHQQQPMAAPQQHGGEAPEGDLKWPNGLSFFTALTGRTEDAKFLF GGGGGGGADDGSKTAAAAQDAGHGGAENVEEYLSLESHSNKARRMESAQSTKFKRSFT LPARMSSSTTSTSPSVSASTAPAPPQQQQGMEYRGPHEGGVYSDLMETFLE</aaseq>|<br />
DNA = <dnaseqindica>2285..2443#3745..4569#aagcagcagcagcaggaggtgagagagtgaagagagagacacagccaaagctcagctcagctaagctaagctctactcctactagtagtccctcttcaccctcactctacctcaccctcccccgagaaaaccccaagaaacgatcaaaaagagaccgaccagcaaggccgtagcctcaaagagcagccaaaaccacggagtttttaccatctatcttagctctagcttagctacctagctagcgccggagcagtgaaagagagagtgagagaagaagaagaggaggtggaaagaagtgaaagaaatggtgggctccggggcggcagggggagggggaggtggaggaggaggaggggatcacgcgcgcagcaaagaggccgccgggatgatggctctccacgaggccctccgcaacgtctgcctcaactccgactggacttactccgtcttctggaccatccgtcctcgcccgtatgtgtaccacttaattaattaccacccctcctatgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaaggcggtgccgcggcggcaacgggtgcaaggtcggcgacgacaacggcagcctgtaagtgagcaattgagcatatatacgcacgcacccccaaccaatcgatcgatcgtgtgtgtagttatcaatctggggatatatcatatatgtatgcaggatgctgatgtgggaggacgggttctgccggccgcgggtggcggagtgcctggaggacatcgacggcgaggaccccgtccgcaaggccttcagcaagatgtccatccagctctacaactacggagaagggtgggtgctgggtaggtgatgcagtgcgtaatcgtgtacagtttcgagtgttttttgcccccttggttctcgtggagtcagtcgacgactcgatttggtagtcatgtcagcctctctatcgcatcgcagctgcggatttcttcgctcgaccgtgtcacccgccctgttcttggattaggacccctgcatgcgcgattaatgctaatagtttccccatgattcctgcgtcgtcgtcgtcgccgtcttagagcaagtttaatagtagagttcactactttctattagtcaatattaaagctaacatgtatagtaggttgagtataaggttatctttattttcttcgtcctctctctttctctcactatgaatttaatgcatattttttagagtttgtatacagttagcccttgcatgagaaccaacactccccacttttatttatctctctcttccacataagcatataacttgcttatagactactgttatcctcgctcttagtgtgtgaaagtgcaactctattttggcccaaccagtagtactacactagtacgaccagtcaccagagagaggaggaaaggggaggagatcgatgggatgggcgtgtgcttttttttcatctttttcgctttaaatttgttccaatatttatctaccgttccttgctcgcctgctttgcttttgggtttaaatcagtgtgtgtggtttgaattagttaacctagggtttggttgattttcggatttggtttggttttgacgacgccggggcatcacatcacgcgtggtgcagcgggggtcattatgcgtgggcagaggcgtgggtaaactacaaattaacagccacttaccccctcctaagtcagtggctttaggcgagggctgtcacgtgcgcacgttcgttggggtgcgtgggggcggtgcctcgtatcgcataaacaaatcccggcgcgtcagtggcttaattgcgggctttgtctgcggattaacaacgcccctctgctacgcgcacaacaaaactctacacagcagcaggagcagcagaattgtaaaaaaaatgtttcaagcagatggaaatgatagaatttttttttctgtaccttttcttgtgattctgcgtccatctgtacgtctatgtgagcgtgtcgatgactttagcacagtaatatagtaatatctctgtttggctactgtattggggattaatttgggtaattactactggtaattgcgttaatctggtcgctttcactttgttctactactactaccgagcttttgagcgtgatgttggtaagacgatgattttgatctggaccgctggtgggtgctgctgcaggctgatgggaaaggtggcgtctgataaatgtcacaaatgggtcttcaaggaaccttctgaatgcgagcccaacatcgccaactactggcagagctcttttgatgccgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctggcccccttgcttttggggggaagagaccttattactgctactactacacacctcattaatcacttgcaaaaacaagctcagcacactgccacagcaacagtggtaggtctcatgtttttactgcgggaatgaggcaaaaaaaagaggaaaaaacaggtaaacagtaaaagagcccgagagagatatatcgacatgtctctggggagttctcaggctttgcatcaaatctgctcgtctgctctgctcccccaaaaagaagagaggaattggatgctctctctcactctctcatcaggatatcaccaagctagtatagaattaacgccgccgatcacagtcacggctaagctttattcctgtgagaacttaaccaaattcccctctcatgcttttgcttttgcagcttcctcccgaatggactgatcagttcgcctctggcatccaggcatgcacttctgttcacctagatcttttacatgctcgtcttagtttgtgattgatatttattagtgatgctaaacttttgcttaatttgcttgtagaccatagcagtgatccaagctggccatggccttcttcagcttggctcttgcaagatcgtgagtacagctatatattgctccctctatttttttaatatataacattgttaattttattctattatatcttttaaacttccatcatcaatagttctctgaatgttcagttaaaaaacgtaaattatactccatccgttctaaaataaactaacatcatactataatgtgatgcatcctattacaacgaatcgaatctgggatgcgttatatcttagtatgaccttggttttttttaagacggatggtgtactacataggtagattttacattataaatggctgtgcaacattacaattttattggatattactccctccgttccataatataatataaggcacaactactttttttagatgttacataatataaggcatgcatacaattaatttctcttctccattaaactattatttttttaaattctccactctcgagatctctaattctattggatgcatgtattatatttattagggtgatctaaactaggagatgataataattgtttcttggtctttggattaagagtggttatacattatattttggaacagagggagtatctttataggggcaattgttatatatatatattttttgatacgaaaataacggttaaagttactccacgcaacagaccgaataaaatgtgtcatatgcatttagtaccgagaggtacagtgagacatggccctttcttgacttgtttttgtcgcgttggtcaaagacgccgacgtggacgtgtttgtggggggcactagctaattgggcaaaacgtacgtacgctaactgtgcagataccggaggacctgcacttcgtgctgcggatgcggcacatgttcgagtcgctcggctaccagtcgggcttcttcctctcccagctcttctcctcctcgcgggggacctcgccgtcgccgtcgtcgttcccgcttaagcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggccgcgttccacccgtcgtcccggccaatgccgcccttccccggcggcggcaaggatgagagccacctgttccatctcccgccggcggcggcggccaagcagccgcagcacatggacgagcaccaccaccaccagcagcagccgatggcggcgccgcagcagcacggcggggaggcgcccgagggcgacctgaaatggcccaacgggctgtcgttcttcaccgcgctcaccggccggaccgaggacgcgaagttcctcttcggcggcggcggaggcggcggcgcggacgacgggagcaagacggcggcggcggcgcaggacgcggggcacggcggcgcggagaacgtggaggagtacctgagcctggagagccactccaacaaggcgaggaggatggagagcgcccagagcaccaagttcaagaggagcttcacgttgccggcgaggatgagctcgtccaccacgtcgacgtccccgtcggtgtcggcgtcgacggcgccggcgccgccgcagcagcagcaagggatggagtacaggggcccacacgagggcggcgtctactcggacctaatggagacgttcttggagtagcctaagctagcttagctagcgaccacaccaagctagcaaacatggaagcatgatcatgatcaagtgtttgttcttgtcacctcttagttttttccttcttttctttctcccaaactatgtttaagcttttgagcggtctggtttggagtttgcttctgtttaattaattaattaattagatcatgtagtaatcctttttgttcctccctagttgtactagctctctccaagtgcaaaaacatga</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074358.2 RefSeq:Os11g0446000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 11]]<br />
[[Category:Chromosome 11]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os11g0446000&diff=168404
Os11g0446000
2014-05-12T08:09:45Z
<p>Xialin: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Function===<br />
RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity. Loss of function of RSS3 only moderately inhibits cell elongation under normal conditions, but it provokes spontaneous root cell swelling, accompanied by severe root growth inhibition, under saline conditions.<br />
<br />
===Expression===<br />
Please input expression information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os11g0446000|<br />
Description = Conserved hypothetical protein|<br />
Version = NM_001074358.2 GI:297611767 GeneID:4350435|<br />
Length = 4813 bp|<br />
Definition = Oryza sativa Japonica Group Os11g0446000, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|<br />
AP = Chromosome 11:16608816..16613628|<br />
CDS = 16611100..16611258,16612560..16613384|<br />
GCID = <gbrowseImage1><br />
name=NC_008404:16608816..16613628<br />
source=RiceChromosome11<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008404:16608816..16613628<br />
source=RiceChromosome11<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgccgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctggcccccttgcttttggggggaagagaccttattactgctactactacacacctcattaatcacttgcaaaaacaagctcagcacactgccacagcaacagtgataccggaggacctgcacttcgtgctgcggatgcggcacatgttcgagtcgctcggctaccagtcgggcttcttcctctcccagctcttctcctcctcgcgggggacctcgccgtcgccgtcgtcgttcccgcttaagcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggccgcgttccacccgtcgtcccggccaatgccgcccttccccggcggcggcaaggatgagagccacctgttccatctcccgccggcggcggcggccaagcagccgcagcacatggacgagcaccaccaccaccagcagcagccgatggcggcgccgcagcagcacggcggggaggcgcccgagggcgacctgaaatggcccaacgggctgtcgttcttcaccgcgctcaccggccggaccgaggacgcgaagttcctcttcggcggcggcggaggcggcggcgcggacgacgggagcaagacggcggcggcggcgcaggacgcggggcacggcggcgcggagaacgtggaggagtacctgagcctggagagccactccaacaaggcgaggaggatggagagcgcccagagcaccaagttcaagaggagcttcacgttgccggcgaggatgagctcgtccaccacgtcgacgtccccgtcggtgtcggcgtcgacggcgccggcgccgccgcagcagcagcaagggatggagtacaggggcccacacgagggcggcgtctactcggacctaatggagacgttcttggagtag</cdnaseq>|<br />
AA = <aaseq>MPYVPSPALSSFLFLQSPLAPLLLGGRDLITATTTHLINHLQKQ AQHTATATVIPEDLHFVLRMRHMFESLGYQSGFFLSQLFSSSRGTSPSPSSFPLKQQQ PPPPQLFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMPPFPGGGKDESHLFHLPPA AAAKQPQHMDEHHHHQQQPMAAPQQHGGEAPEGDLKWPNGLSFFTALTGRTEDAKFLF GGGGGGGADDGSKTAAAAQDAGHGGAENVEEYLSLESHSNKARRMESAQSTKFKRSFT LPARMSSSTTSTSPSVSASTAPAPPQQQQGMEYRGPHEGGVYSDLMETFLE</aaseq>|<br />
DNA = <dnaseqindica>2285..2443#3745..4569#aagcagcagcagcaggaggtgagagagtgaagagagagacacagccaaagctcagctcagctaagctaagctctactcctactagtagtccctcttcaccctcactctacctcaccctcccccgagaaaaccccaagaaacgatcaaaaagagaccgaccagcaaggccgtagcctcaaagagcagccaaaaccacggagtttttaccatctatcttagctctagcttagctacctagctagcgccggagcagtgaaagagagagtgagagaagaagaagaggaggtggaaagaagtgaaagaaatggtgggctccggggcggcagggggagggggaggtggaggaggaggaggggatcacgcgcgcagcaaagaggccgccgggatgatggctctccacgaggccctccgcaacgtctgcctcaactccgactggacttactccgtcttctggaccatccgtcctcgcccgtatgtgtaccacttaattaattaccacccctcctatgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaaggcggtgccgcggcggcaacgggtgcaaggtcggcgacgacaacggcagcctgtaagtgagcaattgagcatatatacgcacgcacccccaaccaatcgatcgatcgtgtgtgtagttatcaatctggggatatatcatatatgtatgcaggatgctgatgtgggaggacgggttctgccggccgcgggtggcggagtgcctggaggacatcgacggcgaggaccccgtccgcaaggccttcagcaagatgtccatccagctctacaactacggagaagggtgggtgctgggtaggtgatgcagtgcgtaatcgtgtacagtttcgagtgttttttgcccccttggttctcgtggagtcagtcgacgactcgatttggtagtcatgtcagcctctctatcgcatcgcagctgcggatttcttcgctcgaccgtgtcacccgccctgttcttggattaggacccctgcatgcgcgattaatgctaatagtttccccatgattcctgcgtcgtcgtcgtcgccgtcttagagcaagtttaatagtagagttcactactttctattagtcaatattaaagctaacatgtatagtaggttgagtataaggttatctttattttcttcgtcctctctctttctctcactatgaatttaatgcatattttttagagtttgtatacagttagcccttgcatgagaaccaacactccccacttttatttatctctctcttccacataagcatataacttgcttatagactactgttatcctcgctcttagtgtgtgaaagtgcaactctattttggcccaaccagtagtactacactagtacgaccagtcaccagagagaggaggaaaggggaggagatcgatgggatgggcgtgtgcttttttttcatctttttcgctttaaatttgttccaatatttatctaccgttccttgctcgcctgctttgcttttgggtttaaatcagtgtgtgtggtttgaattagttaacctagggtttggttgattttcggatttggtttggttttgacgacgccggggcatcacatcacgcgtggtgcagcgggggtcattatgcgtgggcagaggcgtgggtaaactacaaattaacagccacttaccccctcctaagtcagtggctttaggcgagggctgtcacgtgcgcacgttcgttggggtgcgtgggggcggtgcctcgtatcgcataaacaaatcccggcgcgtcagtggcttaattgcgggctttgtctgcggattaacaacgcccctctgctacgcgcacaacaaaactctacacagcagcaggagcagcagaattgtaaaaaaaatgtttcaagcagatggaaatgatagaatttttttttctgtaccttttcttgtgattctgcgtccatctgtacgtctatgtgagcgtgtcgatgactttagcacagtaatatagtaatatctctgtttggctactgtattggggattaatttgggtaattactactggtaattgcgttaatctggtcgctttcactttgttctactactactaccgagcttttgagcgtgatgttggtaagacgatgattttgatctggaccgctggtgggtgctgctgcaggctgatgggaaaggtggcgtctgataaatgtcacaaatgggtcttcaaggaaccttctgaatgcgagcccaacatcgccaactactggcagagctcttttgatgccgtatgtaccatctcctgcactctcctcctttctctttctgcagagccccctggcccccttgcttttggggggaagagaccttattactgctactactacacacctcattaatcacttgcaaaaacaagctcagcacactgccacagcaacagtggtaggtctcatgtttttactgcgggaatgaggcaaaaaaaagaggaaaaaacaggtaaacagtaaaagagcccgagagagatatatcgacatgtctctggggagttctcaggctttgcatcaaatctgctcgtctgctctgctcccccaaaaagaagagaggaattggatgctctctctcactctctcatcaggatatcaccaagctagtatagaattaacgccgccgatcacagtcacggctaagctttattcctgtgagaacttaaccaaattcccctctcatgcttttgcttttgcagcttcctcccgaatggactgatcagttcgcctctggcatccaggcatgcacttctgttcacctagatcttttacatgctcgtcttagtttgtgattgatatttattagtgatgctaaacttttgcttaatttgcttgtagaccatagcagtgatccaagctggccatggccttcttcagcttggctcttgcaagatcgtgagtacagctatatattgctccctctatttttttaatatataacattgttaattttattctattatatcttttaaacttccatcatcaatagttctctgaatgttcagttaaaaaacgtaaattatactccatccgttctaaaataaactaacatcatactataatgtgatgcatcctattacaacgaatcgaatctgggatgcgttatatcttagtatgaccttggttttttttaagacggatggtgtactacataggtagattttacattataaatggctgtgcaacattacaattttattggatattactccctccgttccataatataatataaggcacaactactttttttagatgttacataatataaggcatgcatacaattaatttctcttctccattaaactattatttttttaaattctccactctcgagatctctaattctattggatgcatgtattatatttattagggtgatctaaactaggagatgataataattgtttcttggtctttggattaagagtggttatacattatattttggaacagagggagtatctttataggggcaattgttatatatatatattttttgatacgaaaataacggttaaagttactccacgcaacagaccgaataaaatgtgtcatatgcatttagtaccgagaggtacagtgagacatggccctttcttgacttgtttttgtcgcgttggtcaaagacgccgacgtggacgtgtttgtggggggcactagctaattgggcaaaacgtacgtacgctaactgtgcagataccggaggacctgcacttcgtgctgcggatgcggcacatgttcgagtcgctcggctaccagtcgggcttcttcctctcccagctcttctcctcctcgcgggggacctcgccgtcgccgtcgtcgttcccgcttaagcagcagcagccgccgccgccgcagctcttcaactggccgggccacgcgccgccgcagctcccgcccggcgcgtcgccgctcttcccgcccgggccggccgcgttccacccgtcgtcccggccaatgccgcccttccccggcggcggcaaggatgagagccacctgttccatctcccgccggcggcggcggccaagcagccgcagcacatggacgagcaccaccaccaccagcagcagccgatggcggcgccgcagcagcacggcggggaggcgcccgagggcgacctgaaatggcccaacgggctgtcgttcttcaccgcgctcaccggccggaccgaggacgcgaagttcctcttcggcggcggcggaggcggcggcgcggacgacgggagcaagacggcggcggcggcgcaggacgcggggcacggcggcgcggagaacgtggaggagtacctgagcctggagagccactccaacaaggcgaggaggatggagagcgcccagagcaccaagttcaagaggagcttcacgttgccggcgaggatgagctcgtccaccacgtcgacgtccccgtcggtgtcggcgtcgacggcgccggcgccgccgcagcagcagcaagggatggagtacaggggcccacacgagggcggcgtctactcggacctaatggagacgttcttggagtagcctaagctagcttagctagcgaccacaccaagctagcaaacatggaagcatgatcatgatcaagtgtttgttcttgtcacctcttagttttttccttcttttctttctcccaaactatgtttaagcttttgagcggtctggtttggagtttgcttctgtttaattaattaattaattagatcatgtagtaatcctttttgttcctccctagttgtactagctctctccaagtgcaaaaacatga</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074358.2 RefSeq:Os11g0446000]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 11]]<br />
[[Category:Chromosome 11]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168401
Os02g0771400
2014-05-12T08:03:29Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus<ref name="ref1" />.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants<ref name="ref1" />.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He,Jianbin Su,Shengying Shu,Yang Zhang,Ying Ao,Bing Liu,Dongru Feng,Jinfa Wang,Hongbin Wang;<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants, PLoS ONE, 2012, 7(4): e34995</ref><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168400
Os02g0771400
2014-05-12T08:02:47Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus<ref name="ref1" />.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants<ref name="ref1" />.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants, PLoS ONE, 2012, 7(4): e34995</ref><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168399
Os02g0771400
2014-05-12T08:00:28Z
<p>Xialin: /* Evolution */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus<ref name="ref1" />.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants<ref name="ref1" />.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.</ref><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168398
Os02g0771400
2014-05-12T08:00:16Z
<p>Xialin: /* Expression */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus<ref name="ref1" />.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.</ref><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168397
Os02g0771400
2014-05-12T07:56:49Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.</ref><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168396
Os02g0771400
2014-05-12T07:56:15Z
<p>Xialin: /* Function */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref name="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168395
Os02g0771400
2014-05-12T07:55:55Z
<p>Xialin: /* Function */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection<ref="ref1" />.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168394
Os02g0771400
2014-05-12T07:54:58Z
<p>Xialin: /* Function */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<ref="dddd"><br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168393
Os02g0771400
2014-05-12T07:52:03Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168385
Os02g0771400
2014-05-12T07:46:28Z
<p>Xialin: /* Labs working on this gene */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168383
Os02g0771400
2014-05-12T07:46:11Z
<p>Xialin: /* Labs working on this gene */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168380
Os02g0771400
2014-05-12T07:40:12Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168379
Os02g0771400
2014-05-12T07:39:45Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168377
Os02g0771400
2014-05-12T07:37:19Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
* <ref name="ref1"><br />
Inukai Y, Sakamoto T, Ueguchi-Tanaka M, et al. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling[J]. The Plant Cell Online, 2005, 17(5): 1387-1396.<br />
</ref><br />
* <ref name="ref2"><br />
Liu H, Wang S, Yu X, et al. ARL1, a LOB‐domain protein required for adventitious root formation in rice[J]. The Plant Journal, 2005, 43(1): 47-56.<br />
</ref><br />
* <ref name="ref3"><br />
Husbands A, Bell E M, Shuai B, et al. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins[J]. Nucleic Acids Research, 2007, 35(19): 6663-6671.<br />
</ref><br />
* <ref name="ref4"><br />
Shuai B, Reynaga-Peña C G, Springer P S. The lateral organ boundaries gene defines a novel, plant-specific gene family[J]. Plant physiology, 2002, 129(2): 747-761.<br />
</ref><br />
* <ref name="ref5"><br />
Mangeon A, Bell E M, Lin W, et al. Misregulation of the LOB domain gene DDA1 suggests possible functions in auxin signalling and photomorphogenesis[J]. Journal of experimental botany, 2011, 62(1): 221-233.<br />
</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168376
Os02g0771400
2014-05-12T07:35:58Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He,Jianbin Su,Shengying Shu,Yang Zhang,Ying Ao,Bing Liu,Dongru Feng,Jinfa Wang,Hongbin Wang.<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants, PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<references><br />
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168372
Os02g0771400
2014-05-12T07:33:41Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He,Jianbin Su,Shengying Shu,Yang Zhang,Ying Ao,Bing Liu,Dongru Feng,Jinfa Wang,Hongbin Wang.<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants, PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168369
Os02g0771400
2014-05-12T07:32:33Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He,Jianbin Su,Shengying Shu,Yang Zhang,Ying Ao,Bing Liu,Dongru Feng,Jinfa Wang,Hongbin Wang.<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168368
Os02g0771400
2014-05-12T07:31:13Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995.<br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168367
Os02g0771400
2014-05-12T07:29:24Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168366
Os02g0771400
2014-05-12T07:28:54Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name=ref1>Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168365
Os02g0771400
2014-05-12T07:28:32Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995.</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168363
Os02g0771400
2014-05-12T07:24:46Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1"> Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants PLoS ONE, 2012, 7(4): e34995</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168362
Os02g0771400
2014-05-12T07:22:05Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1"> Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995</ref><br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168361
Os02g0771400
2014-05-12T07:15:54Z
<p>Xialin: /* References */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995<br />
</ref> <br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0439800&diff=168359
Os09g0439800
2014-05-12T07:12:45Z
<p>Xialin: /* References */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
<br />
===Function===<br />
[[File:FigureYL1.jpg|right|thumb|250px|'''Figure 1.''' ''Graphical genotypes (chromosomes 1–12) and vertical root distribution of IR64 and Dro1-NIL. (from reference<ref name="ref1" />).'']]<br />
This gene, named DEEPER ROOTING 1 (DRO1), is a rice quantitative trait locus controlling root growth angle(Figure 1). It is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending <br />
of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more <br />
downward direction<ref name="ref1" />.<br />
<br />
'''GO assignment(s):''' GO:0009734<br />
===Mutation===<br />
Comparing the sequence of this ORF in the IR64 (a leading paddy cultivar widely grown in Asia, showed shallow rooting in an upland field) and KP (an upland cultivar from the Philippines, showed deep rooting) accessions identified a single 1-bp deletion within exon 4 in IR64 (Figure 2.), resulting in the introduction of a premature stop codon. Transforming an 8.7-kb genomic fragment of KP containing the candidate gene into IR64 increased the ratio of deep rooting (an index of downward root growth; Online Methods) compared to IR64 transformed with the vector control<ref name="ref1" />.<br />
[[File:FigureYL2.jpg|center|thumb|680px|'''Figure 2.''' ''Mutation and Structure of DRO1 based on annotation of Os09g0439800 (LOC_Os09g26840.1) (from reference<ref name="ref1" />).'']]<br />
<br />
===Expression===<br />
The predicted protein product of DRO1 has no similarity to known proteins. Genes found in monocots had higher homology to DRO1 than genes found in dicots, DRO1 is not predicted to encode a signal peptide or a transmembrane domain but is predicted to encode two putative N-myristoylation sites associated with lipid modification,suggesting that DRO1 is associated with a membrane protein or with the plasma membrane<ref name="ref1" />.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
*National Institute of Agrobiological Sciences (NIAS), Tsukuba, Japan.<br />
*International Center for Tropical Agriculture (CIAT), Cali, Colombia.<br />
*Faculty of Science, University of Valle, Cali, Colombia.<br />
<br />
==References==<br />
<references><br />
<ref name="ref1">Hanjie He;Jianbin Su;Shengying Shu;Yang Zhang;Ying Ao;Bing Liu;Dongru Feng;Jinfa Wang;Hongbin Wang<br />
Two Homologous Putative Protein Tyrosine Phosphatases, OsPFA-DSP2 and AtPFA-DSP4, Negatively Regulate the Pathogen Response in Transgenic Plants<br />
PLoS ONE, 2012, 7(4): e34995<br />
</ref> <br />
</references><br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os09g0439800|<br />
Description = Conserved hypothetical protein|<br />
Version = NM_001069813.1 GI:115479368 GeneID:4347169|<br />
Length = 3058 bp|<br />
Definition = Oryza sativa Japonica Group Os09g0439800, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|<br />
AP = Chromosome 9:16961491..16964548|<br />
CDS = 16961864..16961883,16961980..16962151,16962243..16962721,16964085..16964163,16964280..16964285<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008402:16961491..16964548<br />
source=RiceChromosome09<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008402:16961491..16964548<br />
source=RiceChromosome09<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgaagattttcagctgggtagccaacaagatcagtgggaagcaagaagcaaatcggtttcccgcaaattcttctgcgccttaccgtgctaacgtgtcagattgtcgaaaggatgaattcagtgattggccccaatcattgcttgctattgggacatttggaaataagcagattgaggaggtagctcaggtggagaattcatccgacaatgtgcagtcagtgcaagataccgtcaaatttacagaggaagaagtagacaagatacggaaagaattcgaaacgctactagcaatcaaagatcaagcagaagctcaacgctcgcatgatgatgaccaagtaggtttacaaaagcgtgccgatggggaagacaatgagaagcatattagacagttgatcaacaaaaggatcattgtaagtaaatcaaagaattcgttaggaaagaaaggaaatacactcaagccgagatcagtcgcttcgttgctcaagttattcatgtgtaagggtggctttacctccgtagttccagaaccaaggaacacatttcctcaatcaagaatggagaagttgctcaaggcaatattgcagaagaaaatacacccgcaaaattcttccacgctagttgctaagaggcatttggactggaagccagatgagacagaaatcaatgagtgcctggaggatgcactgcgtgatctagacgatgatggtgcaaaatgggtcaaaactgattcagagtatattgtgcttgaaatgtaa</cdnaseq>|<br />
AA = <aaseq>MKIFSWVANKISGKQEANRFPANSSAPYRANVSDCRKDEFSDWP QSLLAIGTFGNKQIEEVAQVENSSDNVQSVQDTVKFTEEEVDKIRKEFETLLAIKDQA EAQRSHDDDQVGLQKRADGEDNEKHIRQLINKRIIVSKSKNSLGKKGNTLKPRSVASL LKLFMCKGGFTSVVPEPRNTFPQSRMEKLLKAILQKKIHPQNSSTLVAKRHLDWKPDE TEINECLEDALRDLDDDGAKWVKTDSEYIVLEM</aaseq>|<br />
DNA = <dnaseqindica>2666..2685#2398..2569#1828..2306#386..464#264..269#agatgaagtatagcaagctatcctacagccagccacgctgcaccgaaccctccaatccttggaacttgaaccccttcaaatcacacccagtaggctactagtagtacttctctgcaccaattccatcgccaatagcagccactacaagtcttacatctctcctttcctcctctctctgccattgctaggagcttgcatttcttggtagcttcatcagctagctgctttctccctccccaatctctcattcttcaggccaggatatgaaggtaaaggctcaaaccatcggtgtgattaatcatttcagagaggttaatagatttgaagtgttggtagtgttgatccatttcttgatggcatcatgaggcttgggttttctctgcagattttcagctgggtagccaacaagatcagtgggaagcaagaagcaaatcggtttcccgcaaattcttctgcgccttaccgtgagtgtacctgaactttcagtttccttgtaaattctttcagaactaaggtgattgttgttcaccaggcttcatgctgttcttatgaaatgtttccctgttccttgaggggagagggagagtacggacagtaatttggaagccgtttcctaatttgatattttctttctgtcattctgctgcagttataatgtctttacctcttagcagtttctgcttaggcatcatttgccttattcatttctggatacgatgatactttattgctttgtcctaatttaatcttttcctgctgtcattctgctccatttatggtgtctttacctcttagcagtttccgcttaggcatcatttgccatgttcatttctgaatatgctgatatactttgttgtcttggtagccatatacaagagtgaacgatttaaaggtttctcctaattgctagtaacagaacgcttttcgctctgcgattttctggattaccatcccctgattcctgagtaacctatcacaacgccaatgtgatggagcaaacattgatgtattatgacaatgttgtttctgatcctttgagaaaattttcttatatgcacttgggtgttgtttggaacgcaggaatttcactggaaacagttcaattatcgcacttccggaaaaaaaattcctgcattttaaacggcgctttaagttcagtaggagttttcaattttattttcctcttccctagcacgaaaagtgagagatttttgtgcatatgttatacccccaaaggactatttcatggcctgatgcccgccacgccaatatctctgtaaagcactgcttccaactagtcagtatgggtcaaagtcttgactaagtgcaaccctgcaagcaagtgtttccaactagtcagtatggcttcaattatttagttgatttataaccccaaccctccacttgtgaccaagaagaatttgatttgagcagacaatatcctgacctcggatggtttcgtaaatcgtactaaggaatcagatctgagccactagtccagctggactacagtacattatttatctctcaagattacataaaaagactactattgtacagagaatgcattgtttaagtggtaacaactgctgtgataagttattcctggtatacagaaaaatggcaggtgaaaacatcagggagtggagtaagcatgggcagacattgtacttaaagagtgataggccaatgagaatcactgggtgtttaaggattaaaaatttgtggtccatgctctagacatccaatttatgctaatatgaacttaggaccatatatttatgtttgtttactgatcttgcggcttaatcgagttctaatgcgcaggtgctaacgtgtcagattgtcgaaaggatgaattcagtgattggccccaatcattgcttgctattgggacatttggaaataagcagattgaggaggtagctcaggtggagaattcatccgacaatgtgcagtcagtgcaagataccgtcaaatttacagaggaagaagtagacaagatacggaaagaattcgaaacgctactagcaatcaaagatcaagcagaagctcaacgctcgcatgatgatgaccaagtaggtttacaaaagcgtgccgatggggaagacaatgagaagcatattagacagttgatcaacaaaaggatcattgtaagtaaatcaaagaattcgttaggaaagaaaggaaatacactcaagccgagatcagtcgcttcgttgctcaagttattcatgtgtaagggtggctttacctccgtagttccagaaccaaggaacacatttcctcaatcaagaatggagaaggtacacagtgaaattctttttttcttatgtaacatgataagttttacatactttctcgtcctcttattatcttatatgatgttcattgcagttgctcaaggcaatattgcagaagaaaatacacccgcaaaattcttccacgctagttgctaagaggcatttggactggaagccagatgagacagaaatcaatgagtgcctggaggatgcactgcgtgatctagacgatgatggtgcaaaatgggtcaaaactgattcagagtgtaagtagcatacttgcctatcatgaattgaaccttttcttttgccacttttgtcaatggagcaactgactgaatatgaacttttcttgtttccagatattgtgcttgaaatgtaaagttgggtgaatatgttagttcgttcatgccaggtatatacctttctttgatccccaaattttcaactcaactcaaatgtgaattatccttgatctagcatgtctctctgttttgatctgattagtgtgattccaatctgcaggttccaaaggtcctggcaagcttggggtttatggtgttactacgtaatgatataaatatgggatatagttagcaatgaagctctatgatcatgtaatgctcctccattatttctgacatgaaccatctgtaatttgaatcatgataaggaggttctgggacaaaggcctattccatgtgtctactctcttctgccctgaaactgtaaagaacgcattcaattttttcaac</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069813.1 RefSeq:Os09g0439800]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 9]]<br />
[[Category:Chromosome 9]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168358
Os02g0771400
2014-05-12T07:09:30Z
<p>Xialin: /* Interpro hits */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168357
Os02g0771400
2014-05-12T07:09:15Z
<p>Xialin: /* Labs working on this gene */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
*Key Laboratory of Gene Engineering of Ministry of Education<br />
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168356
Os02g0771400
2014-05-12T07:08:45Z
<p>Xialin: /* Labs working on this gene */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Key Laboratory of Gene Engineering of Ministry of Education<br />
State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources<br />
School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168355
Os02g0771400
2014-05-12T06:59:26Z
<p>Xialin: /* Function */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.<br />
<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168354
Os02g0771400
2014-05-12T06:44:44Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
[[File:1.jpg]]<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168351
Os02g0771400
2014-05-12T06:29:41Z
<p>Xialin: /* BlastP Searches (UniRef 100) */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 89.44 <br />
| | 161 <br />
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ<br />
| | 2.2e-69 <br />
|-<br />
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]<br />
| | 89.44 <br />
| | 161 <br />
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re<br />
| | 2.2e-69<br />
|-<br />
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]<br />
| | 89.44 <br />
| | 161 <br />
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni <br />
| | 3.6e-69<br />
|-<br />
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]<br />
| | 74.77 <br />
| | 214 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]<br />
| | 75.23 <br />
| | 214 <br />
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep <br />
| | 7.5e-69 <br />
|-<br />
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]<br />
| | 75.23 <br />
| | 214 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA <br />
| | 4.1e-68 <br />
|-<br />
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]<br />
| | 74.65 <br />
| | 217 <br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-67 <br />
|-<br />
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]<br />
| | 85.29 <br />
| | 170 <br />
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum <br />
| | 6e-67 <br />
|-<br />
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]<br />
| | 72.22 <br />
| | 216 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9 <br />
| | 3.3e-66 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]<br />
| | 82.72<br />
| | 162<br />
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini <br />
| | 3.2e-61 <br />
|-<br />
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]<br />
| | 77.14 <br />
| | 175<br />
| | Tyrosine specific protein phosphatase family protein n=1 Tax <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]<br />
| | 86.54 <br />
| | 156<br />
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus <br />
| | 2.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]<br />
| | 85.99 <br />
| | 157<br />
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab<br />
| | 5.9e-60 <br />
|-<br />
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]<br />
| | 84.18 <br />
| | 158<br />
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ <br />
| | 9.7e-60 <br />
|-<br />
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]<br />
| | 85.35 <br />
| | 157<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P <br />
| | 1.2e-59 <br />
|-<br />
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]<br />
| | 82.39 <br />
| | 159<br />
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID <br />
| | 1.6e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]<br />
| | 84.81<br />
| | 158<br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P<br />
| | 3.3e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]<br />
| | 82.5 <br />
| | 160 <br />
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL<br />
| | 8.7e-59 <br />
|-<br />
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]<br />
| | 84.81 <br />
| | 158 <br />
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P <br />
| | 8.7e-59 <br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168350
Os02g0771400
2014-05-12T05:44:09Z
<p>Xialin: /* BlastP Searches (UniRef 100) */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168349
Os02g0771400
2014-05-12T05:38:22Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
===Interpro hits===<br />
===BlastP Searches (UniRef 100)===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|- <br />
! | Accession <br />
! | %Sim <br />
! | Length<br />
! | Description <br />
! | P-value <br />
|-<br />
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]<br />
| | 94.12 <br />
| | 204 <br />
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ<br />
| | 4.2e-98<br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168348
Os02g0771400
2014-05-12T05:28:48Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
===PFAM hits===<br />
{| class='wikitable' style="text-align:center" <br />
<br />
|-<br />
! | Accession <br />
! | Name<br />
! | Match Start<br />
! | Match End <br />
! | E-value <br />
|-<br />
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]<br />
| | Y_phosphatase2<br />
| | 46 <br />
| | 198<br />
| | 9.8e-63<br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168347
Os02g0771400
2014-05-12T05:23:01Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With <br />
|-<br />
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]<br />
| | biological_process<br />
| | cellular process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]<br />
| | biological_process<br />
| | metabolic process <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]<br />
| | molecular_function <br />
| | hydrolase activity <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]<br />
| | cellular_component<br />
| | cellular_component <br />
| | IEA <br />
| | TAIR:AT1G05000<br />
|-<br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168346
Os02g0771400
2014-05-12T05:15:50Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
{| class='wikitable' style="text-align:center"<br />
|-<br />
! | GO accession<br />
! | Type<br />
! | Name<br />
! | Code<br />
! | With<br />
|-<br />
| rowspan="3"|Gene amplication<br />
| | 5'-CAACTCACTCCCGCTCAACACAGC-3'<br />
| | 5'-TTTGAAATGCAATGTCGTCCACC-3' (used to amplify exon 1 <ref name="ref2" />)<br />
|-<br />
| | 5'-GCGCCAATGGGGTAATTAAAACG-3'<br />
| | 5'-GGCATTCCATTGTTTGTGATTGG-3' (used to amplify exon 2 <ref name="ref2" />)<br />
|-<br />
| | 5'-GTTTGTCCTTGTCGCGTTGCTCAG-3'<br />
| | 5'-TCTGTTCGTTCCGTTTCGTTCCG-3' (used to amplify exon 3 <ref name="ref2" />)<br />
|-<br />
| rowspan="2"|RT-PCR<br />
| | 5'-CAACTCACTCCCGCTCAACACAGC-3'<br />
| | 5'-GTTCGTTCCGTTTCGGTTCCG-3' <ref name="ref3" /><br />
|-<br />
| | 5'-AGCTGGACATGCCCGTGGTC-3'<br />
| | 5'-TTGAGCTGCTGTCCGCGAAG-3' <ref name="ref3" /><br />
|}<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168345
Os02g0771400
2014-05-12T05:05:36Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
<nowiki>GO accession Type Name Code With<br />
GO:0009987 biological_process cellular process IEA TAIR:AT1G05000<br />
GO:0008152 biological_process metabolic process IEA TAIR:AT1G05000<br />
GO:0016787 molecular_function hydrolase activity IEA TAIR:AT1G05000<br />
GO:0005575 cellular_component cellular_component IEA TAIR:AT1G05000</nowiki><br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168344
Os02g0771400
2014-05-12T05:00:38Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
GO accession Type Name Code With<br />
<br />
----<br />
<br />
GO:0009987[http://amigo.geneontology.org/amigo/term/GO:0009987] biological_process cellular process IEA TAIR:AT1G05000<br />
GO:0008152 biological_process metabolic process IEA TAIR:AT1G05000<br />
GO:0016787 molecular_function hydrolase activity IEA TAIR:AT1G05000<br />
GO:0005575 cellular_component cellular_component IEA TAIR:AT1G05000<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168343
Os02g0771400
2014-05-12T04:58:50Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
GO accession Type Name Code With<br />
GO:0009987[http://amigo.geneontology.org/amigo/term/GO:0009987] biological_process cellular process IEA TAIR:AT1G05000<br />
GO:0008152 <br />
----<br />
biological_process metabolic process IEA TAIR:AT1G05000<br />
GO:0016787 molecular_function hydrolase activity IEA TAIR:AT1G05000<br />
GO:0005575 cellular_component cellular_component IEA TAIR:AT1G05000<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168342
Os02g0771400
2014-05-12T04:44:16Z
<p>Xialin: /* Gene Ontology Classification */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
GO accession Type Name Code With<br />
GO:0009987[http://amigo.geneontology.org/amigo/term/GO:0009987] biological_process cellular process IEA TAIR:AT1G05000<br />
GO:0008152 biological_process metabolic process IEA TAIR:AT1G05000<br />
GO:0016787 molecular_function hydrolase activity IEA TAIR:AT1G05000<br />
GO:0005575 cellular_component cellular_component IEA TAIR:AT1G05000<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168341
Os02g0771400
2014-05-12T04:39:43Z
<p>Xialin: /* Ontology and associated genes */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Gene Ontology Classification ===<br />
GO accession Type Name Code With<br />
GO:0009987[http://amigo.geneontology.org/amigo/term/GO:0009987] biological_process cellular process IEA TAIR:AT1G05000<br />
GO:0008152 biological_process metabolic process IEA TAIR:AT1G05000<br />
GO:0016787 molecular_function hydrolase activity IEA TAIR:AT1G05000<br />
GO:0005575 cellular_component cellular_component IEA TAIR:AT1G05000<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168340
Os02g0771400
2014-05-12T04:29:54Z
<p>Xialin: /* Ontology and associated genes */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Ontology and associated genes===<br />
Phenotypic characteristics:[[http://www.ricedata.cn/ontology/ontology.aspx?db=gene&ta=TO:0000074]]<br />
Molecular function:<br />
Biological process：<br />
Cellular component：<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168338
Os02g0771400
2014-05-12T04:26:02Z
<p>Xialin: /* Ontology and associated genes */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Ontology and associated genes===<br />
Phenotypic characteristics:[[Rice blast resistance]]<br />
Molecular function:<br />
Biological process：<br />
Cellular component：<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168337
Os02g0771400
2014-05-12T04:25:14Z
<p>Xialin: /* Ontology and associated genes */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Ontology and associated genes===<br />
Phenotypic characteristics:[[Rice blast resistance http://www.ricedata.cn/ontology/ontology.aspx?db=gene&ta=TO:0000074]]<br />
Molecular function:<br />
Biological process：<br />
Cellular component：<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168336
Os02g0771400
2014-05-12T04:21:29Z
<p>Xialin: /* Ontology and associated genes */</p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Ontology and associated genes===<br />
Phenotypic characteristics:[[http://www.ricedata.cn/ontology/ontology.aspx?db=gene&ta=TO:0000074]]<br />
Molecular function:<br />
Biological process：<br />
Cellular component：<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168335
Os02g0771400
2014-05-12T04:19:47Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
===Ontology and associated genes===<br />
Phenotypic characteristics:<br />
Molecular function:<br />
Biological process：<br />
cellular component：<br />
<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168334
Os02g0771400
2014-05-12T04:10:58Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. <br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
<br />
AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to<br />
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin
https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os02g0771400&diff=168333
Os02g0771400
2014-05-12T04:02:08Z
<p>Xialin: </p>
<hr />
<div>Protein Tyrosine Phosphatase<br />
<br />
==Annotated Information==<br />
===Function===<br />
Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection. OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.<br />
===Expression===<br />
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this gene==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
==Structured Information==<br />
{{JaponicaGene|<br />
GeneName = Os02g0771400|<br />
Description = Putative tyrosine phosphatase family protein|<br />
Version = NM_001054792.2 GI:297599967 GeneID:4330871|<br />
Length = 3886 bp|<br />
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|<br />
Source = Oryza sativa Japonica Group<br />
<br />
ORGANISM Oryza sativa Japonica Group<br />
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br />
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br />
clade; Ehrhartoideae; Oryzeae; Oryza.<br />
|<br />
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|<br />
AP = Chromosome 2:33425073..33428958|<br />
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|<br />
GCID = <gbrowseImage1><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage1>|<br />
GSID = <gbrowseImage2><br />
name=NC_008395:33425073..33428958<br />
source=RiceChromosome02<br />
preset=GeneLocation<br />
</gbrowseImage2>|<br />
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|<br />
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|<br />
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|<br />
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|<br />
}}<br />
[[Category:Genes]]<br />
[[Category:Japonica mRNA]]<br />
[[Category:Oryza Sativa Japonica Group]]<br />
[[Category:Japonica Genes]]<br />
[[Category:Japonica Chromosome 2]]<br />
[[Category:Chromosome 2]]</div>
Xialin