Os07g0604700

2016-10-08T03:04:11Z

Xysj1988: /* Function */

The rice '''''Os07g0604700''''' was reported as '''''OsB12D1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0604700''''' '''''<=>''''' '''''OsB12D1'''''
===Function===
* '''''OsB12D1''''' pertains to an ancient protein family with an amino acid sequence highly conserved from moss to angiosperms;
* '''''OsB12D1''''' is an anoxic or submergence resistance-related gene;
* '''''OsB12D1''''' is a promising gene that can help to enhance rice seedling establishment in farming practices, especially for direct seeding.
* Overexpression of '''''OsB12D1''''' enhanced rice seed flooding tolerance.

===Expression===
* RT-PCR results showed '''''OsB12D1''''' is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth.
* '''''OsB12D1''''' is one of the major transcripts and is primarily expressed in germinating seed and root.
* The digital expression patterns indicated the OsB12Ds were highly expressed in germinating seed and low in dry seeds, stems and leaves.

===Subcellular localization===
* A construct of p35S-OsB12D1-gfp was introduced into the transient expression system of the Arabidopsis protoplast to investigate the subcellular localization of OsB12D1. The florescence signal of OsB12D1-GFP was observed to well match the RFP signal of MitoTracker Red but not overlap the chlorophyll (Figure 5A), which indicated that the '''''OsB12D1 is mainly located in the mitochondrion.'''''

Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China;
* Graduate University of Chinese Academy of Sciences, Beijing 100049, China;

==References==
Please input cited references here.

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os07g0604700

2016-10-08T03:03:03Z

Xysj1988: /* Expression */

The rice '''''Os07g0604700''''' was reported as '''''OsB12D1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0604700''''' '''''<=>''''' '''''OsB12D1'''''
===Function===
* '''''OsB12D1''''' pertains to an ancient protein family with an amino acid sequence highly conserved from moss to angiosperms;
* '''''OsB12D1''''' is an anoxic or submergence resistance-related gene;
* '''''OsB12D1''''' is a promising gene that can help to enhance rice seedling establishment in farming practices, especially for direct seeding.

===Expression===
* RT-PCR results showed '''''OsB12D1''''' is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth.
* '''''OsB12D1''''' is one of the major transcripts and is primarily expressed in germinating seed and root.
* The digital expression patterns indicated the OsB12Ds were highly expressed in germinating seed and low in dry seeds, stems and leaves.

===Subcellular localization===
* A construct of p35S-OsB12D1-gfp was introduced into the transient expression system of the Arabidopsis protoplast to investigate the subcellular localization of OsB12D1. The florescence signal of OsB12D1-GFP was observed to well match the RFP signal of MitoTracker Red but not overlap the chlorophyll (Figure 5A), which indicated that the '''''OsB12D1 is mainly located in the mitochondrion.'''''

Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China;
* Graduate University of Chinese Academy of Sciences, Beijing 100049, China;

==References==
Please input cited references here.

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os07g0604700

2016-10-08T03:00:01Z

Xysj1988: /* Evolution */

The rice '''''Os07g0604700''''' was reported as '''''OsB12D1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os07g0604700''''' '''''<=>''''' '''''OsB12D1'''''
===Function===
* '''''OsB12D1''''' pertains to an ancient protein family with an amino acid sequence highly conserved from moss to angiosperms;
* '''''OsB12D1''''' is an anoxic or submergence resistance-related gene;
* '''''OsB12D1''''' is a promising gene that can help to enhance rice seedling establishment in farming practices, especially for direct seeding.

===Expression===
* RT-PCR results showed '''''OsB12D1''''' is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth.
* '''''OsB12D1''''' is one of the major transcripts and is primarily expressed in germinating seed and root.

===Subcellular localization===
* A construct of p35S-OsB12D1-gfp was introduced into the transient expression system of the Arabidopsis protoplast to investigate the subcellular localization of OsB12D1. The florescence signal of OsB12D1-GFP was observed to well match the RFP signal of MitoTracker Red but not overlap the chlorophyll (Figure 5A), which indicated that the '''''OsB12D1 is mainly located in the mitochondrion.'''''

Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China;
* Graduate University of Chinese Academy of Sciences, Beijing 100049, China;

==References==
Please input cited references here.

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Os07g0604700

2016-10-08T02:56:24Z

Xysj1988: /* Expression */

Os07g0604700

2016-10-08T02:56:10Z

Xysj1988: /* Expression */

2016-10-03T13:10:07Z

Xysj1988: /* Annotated Information */

The rice '''''Os02g0101500''''' was reported as '''''OsHPR1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
[[File:Os02g0101500-1.png|right|thumb|327px|'''Figure 4.''' ''Subcellular localizations of GFP–HPR1 and GFP-HPR2 fusions in transgenic rice protoplasts.<ref name="ref1" />.'']]
===Gene Symbol===
*'''''Os02g0101500''''' '''<=>''' '''''OsHPR1''''','''''HPR1'''''

===Function===
* The researchers constructed over-expression of the '''''OsHPR1''''' gene and RNA interference plants of '''''OsHPR1''''' and '''''OsHPR2''''' genes in rice.
* The phenotypes of all transgenic lines were determined in ambient air and CO 2 -elevated air. The phenotype typical of photorespiration mutants were observed only where activity of both '''''HPR1''''' and '''''HPR2''''' were down-regulated in the same line.
* Double deletion of '''''OsHPR1''''' and '''''OsHPR2''''' genes significantly reduces plant growth under normal photorespiration condition
* These findings demonstrate that two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.

===Expression===
* Results from RT-PCR, western-blot and enzyme assays showed that '''''HPR1''''' activity changed significantly in corresponding transgenic lines without any effect on '''''HPR2''''' activity, which is the same for '''''HPR2'''''.

===Subcellular Localization===
* In the present study, the subcellular localization of '''''OsHPR1''''' protein was first predicted to be located in the peroxisome and cytosol respectively.
* In agreement with the prediction of HPR1 localization, the spots of HPR1-GFP and PTS1-CFP fusions were quite similar in the co-transformation protoplast, indicating the subcellular localization of HPR1 protein is in the peroxisome.

You can also add sub-section(s) at will.

==Labs working on this gene==
* State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China,
* The Chinese University of Hong Kong Shenzhen Institute, Shenzhen, China,
* State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China

==References==
<references>
* <ref name="ref1">
Ye N, Yang G, Chen Y, Zhang C, Zhang J, Peng X. Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice. J Integr Plant Biol. 2014 Feb;56(2):170-80. doi: 10.1111/jipb.12125. Epub 2014 Jan 8. PubMed PMID: 24401104.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

File:Os02g0101500.png

2016-10-03T13:08:37Z

Xysj1988:

Os01g0228600

2016-10-03T13:07:15Z

Xysj1988: /* Annotated Information */

The rice '''''Os01g0228600''''' was reported as '''''OsHPR2''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0228600''''' '''<=>''' '''''OsHPR2''''','''''HPR2'''''
===Function===
* The researchers constructed over-expression of the '''''OsHPR1''''' gene and RNA interference plants of '''''OsHPR1''''' and '''''OsHPR2''''' genes in rice.
* The phenotypes of all transgenic lines were determined in ambient air and CO 2 -elevated air. The phenotype typical of photorespiration mutants were observed only where activity of both HPR1 and HPR2 were down-regulated in the same line.
* Double deletion of '''''OsHPR1''''' and '''''OsHPR2''''' genes significantly reduces plant growth under normal photorespiration condition
* These findings demonstrate that two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.

===Expression===
* The expression of HPR1 gene is induced by light.
* The light regulations on HPR1 gene expression and alternative splicing were species-specific.
* Results from RT-PCR, western-blot and enzyme assays showed that '''''HPR1''''' activity changed significantly in corresponding transgenic lines without any effect on '''''HPR2''''' activity, which is the same for HPR2.

===Subcellular Localization===
* In the present study, the subcellular localization of '''''OsHPR2''''' protein was first predicted to be located in the peroxisome and cytosol respectively.
* The fluorescent pattern of chimeric protein with HPR2 was found to accumulate in the cytosol and on the surface of the nucleus.

You can also add sub-section(s) at will.

==Labs working on this gene==
* State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China,
* The Chinese University of Hong Kong Shenzhen Institute, Shenzhen, China,
* State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China

==References==
<references>
* <ref name="ref1">
Ye N, Yang G, Chen Y, Zhang C, Zhang J, Peng X. Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice. J Integr Plant Biol. 2014 Feb;56(2):170-80. doi: 10.1111/jipb.12125. Epub 2014 Jan 8. PubMed PMID: 24401104.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os02g0101500

2016-10-03T13:06:14Z

Xysj1988: /* Annotated Information */

The rice '''''Os02g0101500''''' was reported as '''''OsHPR1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0101500''''' '''<=>''' '''''OsHPR1''''','''''HPR1'''''

===Function===
* The researchers constructed over-expression of the '''''OsHPR1''''' gene and RNA interference plants of '''''OsHPR1''''' and '''''OsHPR2''''' genes in rice.
* The phenotypes of all transgenic lines were determined in ambient air and CO 2 -elevated air. The phenotype typical of photorespiration mutants were observed only where activity of both '''''HPR1''''' and '''''HPR2''''' were down-regulated in the same line.
* Double deletion of '''''OsHPR1''''' and '''''OsHPR2''''' genes significantly reduces plant growth under normal photorespiration condition
* These findings demonstrate that two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.

===Expression===
* Results from RT-PCR, western-blot and enzyme assays showed that '''''HPR1''''' activity changed significantly in corresponding transgenic lines without any effect on '''''HPR2''''' activity, which is the same for '''''HPR2'''''.

===Subcellular Localization===
* In the present study, the subcellular localization of '''''OsHPR1''''' protein was first predicted to be located in the peroxisome and cytosol respectively.
* In agreement with the prediction of HPR1 localization, the spots of HPR1-GFP and PTS1-CFP fusions were quite similar in the co-transformation protoplast, indicating the subcellular localization of HPR1 protein is in the peroxisome.

You can also add sub-section(s) at will.

==Labs working on this gene==
* State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China,
* The Chinese University of Hong Kong Shenzhen Institute, Shenzhen, China,
* State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China

==References==
<references>
* <ref name="ref1">
Ye N, Yang G, Chen Y, Zhang C, Zhang J, Peng X. Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice. J Integr Plant Biol. 2014 Feb;56(2):170-80. doi: 10.1111/jipb.12125. Epub 2014 Jan 8. PubMed PMID: 24401104.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os02g0101500

2016-10-03T13:01:57Z

Xysj1988: /* Expression */

The rice '''''Os02g0101500''''' was reported as '''''OsHPR1''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os02g0101500''''' '''<=>''' '''''OsHPR1''''','''''HPR1'''''

===Function===
* The researchers constructed over-expression of the '''''OsHPR1''''' gene and RNA interference plants of '''''OsHPR1''''' and '''''OsHPR2''''' genes in rice.
* The phenotypes of all transgenic lines were determined in ambient air and CO 2 -elevated air. The phenotype typical of photorespiration mutants were observed only where activity of both '''''HPR1''''' and '''''HPR2''''' were down-regulated in the same line.
* Double deletion of '''''OsHPR1''''' and '''''OsHPR2''''' genes significantly reduces plant growth under normal photorespiration condition
* These findings demonstrate that two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.

===Expression===
* Results from RT-PCR, western-blot and enzyme assays showed that '''''HPR1''''' activity changed significantly in corresponding transgenic lines without any effect on '''''HPR2''''' activity, which is the same for '''''HPR2'''''.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China,
* The Chinese University of Hong Kong Shenzhen Institute, Shenzhen, China,
* State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China

==References==
<references>
* <ref name="ref1">
Ye N, Yang G, Chen Y, Zhang C, Zhang J, Peng X. Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice. J Integr Plant Biol. 2014 Feb;56(2):170-80. doi: 10.1111/jipb.12125. Epub 2014 Jan 8. PubMed PMID: 24401104.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Os01g0228600

2016-10-03T13:01:43Z

Xysj1988: /* Expression */

The rice '''''Os01g0228600''''' was reported as '''''OsHPR2''''' in 2014 <ref name="ref1" /> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0228600''''' '''<=>''' '''''OsHPR2''''','''''HPR2'''''
===Function===
* The researchers constructed over-expression of the '''''OsHPR1''''' gene and RNA interference plants of '''''OsHPR1''''' and '''''OsHPR2''''' genes in rice.
* The phenotypes of all transgenic lines were determined in ambient air and CO 2 -elevated air. The phenotype typical of photorespiration mutants were observed only where activity of both HPR1 and HPR2 were down-regulated in the same line.
* Double deletion of '''''OsHPR1''''' and '''''OsHPR2''''' genes significantly reduces plant growth under normal photorespiration condition
* These findings demonstrate that two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.

===Expression===
* The expression of HPR1 gene is induced by light.
* The light regulations on HPR1 gene expression and alternative splicing were species-specific.
* Results from RT-PCR, western-blot and enzyme assays showed that '''''HPR1''''' activity changed significantly in corresponding transgenic lines without any effect on '''''HPR2''''' activity, which is the same for HPR2.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
* State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China,
* The Chinese University of Hong Kong Shenzhen Institute, Shenzhen, China,
* State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China

==References==
<references>
* <ref name="ref1">
Ye N, Yang G, Chen Y, Zhang C, Zhang J, Peng X. Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice. J Integr Plant Biol. 2014 Feb;56(2):170-80. doi: 10.1111/jipb.12125. Epub 2014 Jan 8. PubMed PMID: 24401104.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]