RiceWiki - User contributions [en]

Os01g0177400

2017-05-08T08:53:52Z

Xysj2027: /* Annotated Information */

The rice '''''Os01g0177400''''' was reported as '''''OsGA3ox2''''' in 2003 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
[[File:Os01g0177400.png|right|thumb|227px|'''Figure 4.''' ''Phenotype of D18:OsGA2ox1 transgenic rice.<ref name="ref1" />.'']]
===Gene Symbol===
*'''''Os01g0177400''''' '''''<=>''''' '''''GA3OX2, GA3ox1, OsGA3ox2, d18,OsD18'''''

===Function===
* OsGA3ox2 (D18) encodes GA 3-oxidase.
* OsGA3ox2 is important in controlling bioactive GA synthesis for shoot elongation but not for reproductive development.

===Phenotypic analysis===
The rice d18 mutant is a severe GA-deficient dwarf, but its flower and grain　development are not affected。
===Expression===
* In wild-type rice, expression of OsGA3ox2 is regulated by the endogenous bioactive GA content.
* Indeed, the OsGA3ox2 transcript was upregulated by uniconazole (an inhibitor of GA biosynthesis) treatment and downregulated by bioactive GA 3 application —as was the transcript of the green revolution rice gene, OsGA20ox2 (SD1), which encodes GA 20-oxidase 9.

You can also add sub-section(s) at will.

===Knowledge Extension===
* Dwarfing is one of the most valuable traits in crop breeding, because it results in plants that are more resistant to damage by wind and rain (lodging resistant) and have stable increased yields.
* Dwarf mutants have been extensively characterized in many plant species. The endogenous phytohormone GA is one of several factors associated with the dwarf phenotype.

==Labs working on this gene==
* Field Production Science Center, The University of Tokyo, 1-1-1 Midoricyo, Nishi-Tokyo 188-0002, Japan.
* National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
* BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.
* Bioscience and Biotechnology Center, Nagoya University, Furocyo, Chikusa, Nagoya, Aichi 464-8601, Japan.
* Institute of Agriculture and Forestry, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

==References==
<references>
* <ref name="ref1">
Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S,
Matsuoka M, Tanaka H. Genetic manipulation of gibberellin metabolism in
transgenic rice. Nat Biotechnol. 2003 Aug;21(8):909-13. Epub 2003 Jul 13. PubMed
PMID: 12858182.
</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os01g0177400

2017-05-08T08:53:33Z

Xysj2027:

The rice '''''Os01g0177400''''' was reported as '''''OsGA3ox2''''' in 2003 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
[[File:Os01g0177400.png|right|thumb|327px|'''Figure 4.''' ''Phenotype of D18:OsGA2ox1 transgenic rice.<ref name="ref1" />.'']]
===Gene Symbol===
*'''''Os01g0177400''''' '''''<=>''''' '''''GA3OX2, GA3ox1, OsGA3ox2, d18,OsD18'''''

===Function===
* OsGA3ox2 (D18) encodes GA 3-oxidase.
* OsGA3ox2 is important in controlling bioactive GA synthesis for shoot elongation but not for reproductive development.

===Phenotypic analysis===
The rice d18 mutant is a severe GA-deficient dwarf, but its flower and grain　development are not affected。
===Expression===
* In wild-type rice, expression of OsGA3ox2 is regulated by the endogenous bioactive GA content.
* Indeed, the OsGA3ox2 transcript was upregulated by uniconazole (an inhibitor of GA biosynthesis) treatment and downregulated by bioactive GA 3 application —as was the transcript of the green revolution rice gene, OsGA20ox2 (SD1), which encodes GA 20-oxidase 9.

You can also add sub-section(s) at will.

===Knowledge Extension===
* Dwarfing is one of the most valuable traits in crop breeding, because it results in plants that are more resistant to damage by wind and rain (lodging resistant) and have stable increased yields.
* Dwarf mutants have been extensively characterized in many plant species. The endogenous phytohormone GA is one of several factors associated with the dwarf phenotype.

==Labs working on this gene==
* Field Production Science Center, The University of Tokyo, 1-1-1 Midoricyo, Nishi-Tokyo 188-0002, Japan.
* National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
* BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.
* Bioscience and Biotechnology Center, Nagoya University, Furocyo, Chikusa, Nagoya, Aichi 464-8601, Japan.
* Institute of Agriculture and Forestry, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

==References==
<references>
* <ref name="ref1">
Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S,
Matsuoka M, Tanaka H. Genetic manipulation of gibberellin metabolism in
transgenic rice. Nat Biotechnol. 2003 Aug;21(8):909-13. Epub 2003 Jul 13. PubMed
PMID: 12858182.
</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

File:Os01g0177400.png

2017-05-08T08:52:52Z

Xysj2027:

Os01g0177400

2017-05-08T08:51:32Z

Xysj2027: /* References */

The rice '''''Os01g0177400''''' was reported as '''''OsGA3ox2''''' in 2003 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0177400''''' '''''<=>''''' '''''GA3OX2, GA3ox1, OsGA3ox2, d18,OsD18'''''

===Function===
* OsGA3ox2 (D18) encodes GA 3-oxidase.
* OsGA3ox2 is important in controlling bioactive GA synthesis for shoot elongation but not for reproductive development.

===Phenotypic analysis===
The rice d18 mutant is a severe GA-deficient dwarf, but its flower and grain　development are not affected。
===Expression===
* In wild-type rice, expression of OsGA3ox2 is regulated by the endogenous bioactive GA content.
* Indeed, the OsGA3ox2 transcript was upregulated by uniconazole (an inhibitor of GA biosynthesis) treatment and downregulated by bioactive GA 3 application —as was the transcript of the green revolution rice gene, OsGA20ox2 (SD1), which encodes GA 20-oxidase 9.

You can also add sub-section(s) at will.

===Knowledge Extension===
* Dwarfing is one of the most valuable traits in crop breeding, because it results in plants that are more resistant to damage by wind and rain (lodging resistant) and have stable increased yields.
* Dwarf mutants have been extensively characterized in many plant species. The endogenous phytohormone GA is one of several factors associated with the dwarf phenotype.

==Labs working on this gene==
* Field Production Science Center, The University of Tokyo, 1-1-1 Midoricyo, Nishi-Tokyo 188-0002, Japan.
* National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
* BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.
* Bioscience and Biotechnology Center, Nagoya University, Furocyo, Chikusa, Nagoya, Aichi 464-8601, Japan.
* Institute of Agriculture and Forestry, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

==References==
<references>
* <ref name="ref1">
Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S,
Matsuoka M, Tanaka H. Genetic manipulation of gibberellin metabolism in
transgenic rice. Nat Biotechnol. 2003 Aug;21(8):909-13. Epub 2003 Jul 13. PubMed
PMID: 12858182.
</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os01g0177400

2017-05-08T08:51:14Z

Xysj2027: /* Expression */

The rice '''''Os01g0177400''''' was reported as '''''OsGA3ox2''''' in 2003 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0177400''''' '''''<=>''''' '''''GA3OX2, GA3ox1, OsGA3ox2, d18,OsD18'''''

===Function===
* OsGA3ox2 (D18) encodes GA 3-oxidase.
* OsGA3ox2 is important in controlling bioactive GA synthesis for shoot elongation but not for reproductive development.

===Phenotypic analysis===
The rice d18 mutant is a severe GA-deficient dwarf, but its flower and grain　development are not affected。
===Expression===
* In wild-type rice, expression of OsGA3ox2 is regulated by the endogenous bioactive GA content.
* Indeed, the OsGA3ox2 transcript was upregulated by uniconazole (an inhibitor of GA biosynthesis) treatment and downregulated by bioactive GA 3 application —as was the transcript of the green revolution rice gene, OsGA20ox2 (SD1), which encodes GA 20-oxidase 9.

You can also add sub-section(s) at will.

===Knowledge Extension===
* Dwarfing is one of the most valuable traits in crop breeding, because it results in plants that are more resistant to damage by wind and rain (lodging resistant) and have stable increased yields.
* Dwarf mutants have been extensively characterized in many plant species. The endogenous phytohormone GA is one of several factors associated with the dwarf phenotype.

==Labs working on this gene==
* Field Production Science Center, The University of Tokyo, 1-1-1 Midoricyo, Nishi-Tokyo 188-0002, Japan.
* National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
* BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.
* Bioscience and Biotechnology Center, Nagoya University, Furocyo, Chikusa, Nagoya, Aichi 464-8601, Japan.
* Institute of Agriculture and Forestry, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

==References==
<references>
* <ref name="ref1">
Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S,
Matsuoka M, Tanaka H. Genetic manipulation of gibberellin metabolism in
transgenic rice. Nat Biotechnol. 2003 Aug;21(8):909-13. Epub 2003 Jul 13. PubMed
PMID: 12858182.
</ref>
</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os01g0177400

2017-05-08T08:50:46Z

Xysj2027:

The rice '''''Os01g0177400''''' was reported as '''''OsGA3ox2''''' in 2003 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0177400''''' '''''<=>''''' '''''GA3OX2, GA3ox1, OsGA3ox2, d18,OsD18'''''

===Function===
* OsGA3ox2 (D18) encodes GA 3-oxidase.
* OsGA3ox2 is important in controlling bioactive GA synthesis for shoot elongation but not for reproductive development.

===Phenotypic analysis===
The rice d18 mutant is a severe GA-deficient dwarf, but its flower and grain　development are not affected。
===Expression===
* In wild-type rice, expression of OsGA3ox2 is regulated by the endogenous bioactive GA content.
* Indeed, the OsGA3ox2 transcript was upregulated by uniconazole (an inhibitor of GA biosynthesis) treatment and downregulated by bioactive GA 3 application —as was the transcript of the green revolution rice gene, OsGA20ox2 (SD1), which encodes GA 20-oxidase 9 (20ox2 in Fig. 2b).

You can also add sub-section(s) at will.
===Knowledge Extension===
* Dwarfing is one of the most valuable traits in crop breeding, because it results in plants that are more resistant to damage by wind and rain (lodging resistant) and have stable increased yields.
* Dwarf mutants have been extensively characterized in many plant species. The endogenous phytohormone GA is one of several factors associated with the dwarf phenotype.

==Labs working on this gene==
* Field Production Science Center, The University of Tokyo, 1-1-1 Midoricyo, Nishi-Tokyo 188-0002, Japan.
* National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
* BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan.
* Bioscience and Biotechnology Center, Nagoya University, Furocyo, Chikusa, Nagoya, Aichi 464-8601, Japan.
* Institute of Agriculture and Forestry, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

==References==
<references>
* <ref name="ref1">
Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S,
Matsuoka M, Tanaka H. Genetic manipulation of gibberellin metabolism in
transgenic rice. Nat Biotechnol. 2003 Aug;21(8):909-13. Epub 2003 Jul 13. PubMed
PMID: 12858182.
</ref>
</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os09g0417600

2017-05-07T16:37:05Z

Xysj2027: /* Labs working on this gene */

The transcription factor '''''OsWRKY76''''', is a member of rice group IIa WRKY<ref name="ref1"/><ref name="ref2"/><ref name="ref3"/>.

==Annotated Information==
===Function===
*OsWRKY76 '''encodes a group IIa WRKY transcription factor''' of rice. OsWRKY76 plays '''dual and opposing roles''' in '''blast disease resistance''' and '''cold tolerance'''. OsWRKY76 '''binds specifically to the W-box element'''. OsWRKY76 acts as a transcriptional repressor via binding to the W-box<ref name="ref1"/>.

'''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0003700 GO:0003700],[http://amigo.geneontology.org/amigo/term/GO:0005634 GO:0005634], [http://amigo.geneontology.org/amigo/term/GO:0043565 GO:0043565], GO:0045449

===Mutation===
Transgenic plants<ref name="ref1"/>:
*Transgenic plants showed '''more severe symptoms''', which often blasted the whole plant, compared with non-transformed control (NT) plants both in the '''excised leaves''' and in the intact plants.
*Observations of cross-sections of the inoculated leaf blades revealed that in NT plants, the '''spread of mycelia''' was generally '''limited to the spaces''' between motor cells and vascular tissues at 4 dai.
*In W76-OX plants, however, the mycelia vigorously spread into parenchymatous tissues in addition to motor cells and vascular tissues, '''causing a collapse of the parenchyma''', and hyphae already spread over the leaf surface at 4 dai
*These results indicate that the constitutive overexpression of OsWRKY76 '''suppresses basal resistance to ''M. oryzae''''' to a large extent.

===Expression===
*The expression of OsWRKY76 was induced within 48 h after inoculation with rice blast fungus (Magnaporthe oryzae), and by '''wounding''', '''low temperature''', '''benzothiadiazole''', and '''abscisic acid'''<ref name="ref1"/>.

*OsWRKY76 showed '''sequence-specific DNA binding''' to the W-box element in vitro and exhibited W-box-mediated transcriptional repressor activity in cultured rice cells. Overexpression of OsWRKY76 in rice plants resulted in '''drastically increased susceptibility to M. oryzae''', but '''improved tolerance to cold stress'''. Microarray analysis revealed that overexpression of OsWRKY76 '''suppresses the induction''' of a specific set of PR genes and of genes involved in phytoalexin synthesis '''after inoculation with blast fungus''', consistent with the observation that the levels of phytoalexins in the transgenic rice plants remained significantly lower than those in non-transformed control plants<ref name="ref1"/>.

*Overexpression of OsWRKY76 led to the '''increased expression of abiotic stress-associated genes''' such as '''peroxidase''' and '''lipid metabolism genes'''. Overexpression of OsWRKY76 '''increases susceptibility to the blast fungus''' in rice and confers cold tolerance to rice via protection of membranes from damage<ref name="ref1"/>.

===Subcellular localization===
Green fluorescent protein-fused OsWRKY76 '''localized to the nuclei''' in rice epidermal cells, which means OsWRKY76 protein is '''targeted to the nucleus'''<ref name="ref1"/>.

===Evolution===
[[File:OsWRKYs Phylogenetic1.jpg|right|thumb|300px|'''Figure 1.''' Phylogenetic tree of M.grisea-inducible OsWRKYs constructed using the neighbor-joining method.(from reference <ref name="ref2"/>).'']]
*The sequence analysis for 15 ''M. grisea''-inducible ''OsWRKYs'' indicated that 5, ''OsWRKY30'', ''OsWRKY70'', ''OsWRKY82'', ''OsWRKY84'', and ''OsWRKY85'', belong to '''WRKY group I''' which contains two WRKY domains(Fig. 2)<ref name="ref2"/>。 Among the '''WRKY group IIc family''', four ''M. grisea''-inducible WRKYs were identified, ''OsWRKY7'', ''OsWRKY10'', ''OsWRKY11'', and ''OsWRKY67''(Fig. 1). The remaining ''M. grisea''-inducible WRKYs were included in four different groups: ''''''IIa'''''' (''OsWRKY62'' and ''OsWRKY76''), '''IIb''' (''OsWRKY32''), '''IId''' (''OsWRKY83''), and '''III''' (''OsWRKY45'' and ''OsWRKY64'') (Fig. 1)<ref name="ref2"/><ref name="ref3"/>.

===Knowledge Extension===
[[File: WRKY-smRNA interactome1.jpg|right|thumb|300px|'''Figure 2.''' ''Modeling the WRKY-smRNA interactome during reprogramming of defense responses.(from reference <ref name="ref4"/>).'']]

*The WRKY TF superfamily consists of 74 and 109 members in ''Arabidopsis'' (''Arabidopsis thaliana'') and rice (''Oryza sativa''), respectively<ref name="ref4"/><ref name="ref5"/><ref name="ref6"/>.

*The current data point toward the existence of a WRKY-smRNA interactome, where on the one hand, pathogen attack triggers the expression of WRKY genes that regulate cellular smRNA populations, and on the other hand, several differentially regulated smRNAs modulateWRKY TF levels by targeting their transcripts (Fig. 2)<ref name="ref4"/>.

*During pathogen attack, smRNA-generating loci may be under the control of WRKY TFs; at the same time, WRKY abundance may be regulated by smRNAs. RdR, RNA-directed RNA polymerase(Fig. 2)<ref name="ref4"/>.

==Labs working on this gene==
*Disease Resistant Crops Research Unit, GMO Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai,Tsukuba, Ibaraki 305-8602, Japan
*Biotechnology Research Center, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
*Department of Biosciences, Teikyo University, 1-1 Toyosatodai, Utsunomiya, Tochigi 320-8551, Japan
*Sakata Seed Corporation, Kimitsu Research Station, 358 Uchikoshi, Sodegaura, Chiba 299-0217, Japan

==References==
<references>
* <ref name="ref1">
Yokotani N, Sato Y, Tanabe S, et al. WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance[J]. Journal of experimental botany, 2013, 64(16): 5085-5097.
</ref>
* <ref name="ref2">
Ryu H S, Han M, Lee S K, et al. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response[J]. Plant cell reports, 2006, 25(8): 836-847.
</ref>
* <ref name="ref3">
Peng Y, Bartley L E, Canlas P, et al. OsWRKY IIa transcription factors modulate rice innate immunity[J]. Rice, 2010, 3(1): 36-42.
</ref>
* <ref name="ref4">
Pandey S P, Somssich I E. The role of WRKY transcription factors in plant immunity[J]. Plant physiology, 2009, 150(4): 1648-1655.
</ref>
* <ref name="ref5">
Eulgem T, Somssich I E. Networks of WRKY transcription factors in defense signaling[J]. Current opinion in plant biology, 2007, 10(4): 366-371.
</ref>
* <ref name="ref6">
Ross C A, Liu Y, Shen Q J. The WRKY gene family in rice (Oryza sativa)[J]. Journal of Integrative Plant Biology, 2007, 49(6): 827-842.
</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0442700

2017-05-07T16:30:50Z

Xysj2027: /* Function */

The rice '''''Os09g0442700''''' was reported as '''''OsDDM1a''''' in 2012 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
[[File:155-Os03g0722400.png|right|thumb|327px|'''Figure 1.''' ''Expression of OsDDM1 genes during development..<ref name="ref1" />.'']]
===Gene Symbol===
*'''''Os09g0442700''''' '''''<=>''''' '''''OsDDM1a'''''
===Function===
* '''''OsDDM1''''' genes function to silence endogenous loci including those related to retrotransposons in the rice genome, however, their roles on transposition of active transposons in the genome remains unknown.
* Hypomethylation induced by the antisense '''''OsDDM1''''' disturbs normal development.
* Transgenic rice lines expressing '''''OsDDM1a''''' cDNA in antisense orientation exhibited the genomic DNA hypomethylation in repeated sequences similar to the pattern observed in Arabidopsis ddm1 mutants.

===Expression===
* '''''OsDDM1a''''' and '''''OsDDM1b''''' are expressed during development with slight variations among various tissues, suggesting that there might be functional divergence of these two genes (Fig. 1c).

==Labs working on this gene==
* CREST, Japan Science and Technology Agency,Kawaguchi 332-0012, Japan
* Department of Molecular Genetics, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan
* Department of Plant Science, University of Manitoba,Winnipeg R3T 2N2, Canada
* Department of Integrated Genetics, National Institute of Genetics, Mishima 411-0801, Japan

==References==
<references>
* <ref name="ref1">
Higo H, Tahir M, Takashima K, Miura A, Watanabe K, Tagiri A, Ugaki M, Ishikawa
R, Eiguchi M, Kurata N, Sasaki T, Richards E, Takano M, Kishimoto N, Kakutani T,
Habu Y. DDM1 (decrease in DNA methylation) genes in rice (Oryza sativa). Mol
Genet Genomics. 2012 Oct;287(10):785-92. Epub 2012 Aug 24. PubMed PMID: 22915302.
</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os01g0928000

2017-05-07T16:16:37Z

Xysj2027:

The rice gene Os01g0928000 was reported as '''''OsICE2''''' in 2011<ref name="ref1"/>, '''''OsbHLH001/OsICE2''''' in 2013<ref name="ref2"/>, respectively.

==Annotated Information==
[[File: OsICE2 phylogenic1.jpg|right|thumb|250px|'''Figure 1.''' ''Phylogenic tree of ICE (Inducer of CBF Expression) homologs.(from reference <ref name="ref1"/>).'']]
===Gene Symbol===
*'''''Os01g0928000''''' '''''<=>''''' '''''ICE2, OsICE2, OsbHLH001'''''

===Function===
* '''''OsICE''''' '''''OsbHLH001/OsICE2''''' and '''''OsbHLH002/OsICE1''''' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.

'''GO assignment(s):''' GO:0005634, [http://amigo.geneontology.org/amigo/term/GO:0030528 GO:0030528], GO:0045449

===Expression===
*Chilling stress on rice seedlings induced '''two ICE-related proteins''' with molecular masses of approximately 55 and 40 kDa. These sizes are consistent with those predicted for ''OsICE1'' and ''OsICE2'', respectively. In contrast to the proteins, cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''<ref name="ref1"/>.

*'''Salt stress upregulated''' levels of ''OsICE2'' '''protein''' but had '''no effect''' on OsICE2 '''mRNA''' levels. RT-PCR revealed that '''cold stress increased''' the levels of ''OsICE1'' and ''OsICE2'' proteins but did not enhance the expression of their genes. ''OsICE1'' and ''OsICE2'' are regulated mainly '''by post-translational mechanisms''', in a manner similar to that of ''Arabidopsis'' ICE1<ref name="ref1"/>.

===Evolution===
*A '''phylogenetic tree''' of '''ICE homologs''' in '''dicots''' and '''monocots''', using ''Arabidopsis'' PIF3 and human c-myc as outgroups, showed that ICE-related genes can be classified into '''monocot and dicot subfamilies''' (Figure 1).

*''OsICE1'' and ''OsICE2'' share '''very similar sets of motifs''', notably '''an acidic domain''', '''a Ser-rich domain''', '''a bHLH domain''', and '''a possible zipper region''', with ''Arabidopsis'' ''ICE1'', although ''OsICE2'' has a shorter junction region between the acidic region and the Ser-rich region in the amino terminus than ''OsICE1'' and ''Arabidopsis ICE1''<ref name="ref1"/>.

*Although ''OsICE1'' and ''OsICE2'' have '''different predicted molecular masses''', they share '''48% similarity''' at the '''amino acid level'''. They also have '''similarities''' of '''39%''' and '''45%''', respectively, to ''Arabidopsis''<ref name="ref1"/>.

==Labs working on this gene==
*Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan
*Department of Bioresource Sciences, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
*School of Agriculture, Kyushu University, Fukuoka 812-8581, Japan

==References==
<references>
* <ref name="ref1">
Nakamura J, Yuasa T, Huong T T, et al. Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation[J]. Plant biotechnology, 2011, 28(3): 303-309.
</ref>
* <ref name="ref2">
Chen Y, Li F, Ma Y, et al. Overexpression of OrbHLH001, a putative helix–loop–helix transcription factor, causes increased expression of AKT1 and maintains ionic balance under salt stress in rice[J]. Journal of plant physiology, 2013, 170(1): 93-100.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os01g0928000

2017-05-07T16:16:04Z

Xysj2027: /* Function */

The rice gene Os01g0928000 was reported as '''''OsICE2''''' in 2011<ref name="ref1"/>, '''''OsbHLH001/OsICE2''''' in 2013<ref name="ref2"/>, respectively.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0928000''''' '''''<=>''''' '''''ICE2, OsICE2, OsbHLH001'''''

===Function===
* '''''OsICE''''' '''''OsbHLH001/OsICE2''''' and '''''OsbHLH002/OsICE1''''' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.

'''GO assignment(s):''' GO:0005634, [http://amigo.geneontology.org/amigo/term/GO:0030528 GO:0030528], GO:0045449

===Expression===
*Chilling stress on rice seedlings induced '''two ICE-related proteins''' with molecular masses of approximately 55 and 40 kDa. These sizes are consistent with those predicted for ''OsICE1'' and ''OsICE2'', respectively. In contrast to the proteins, cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''<ref name="ref1"/>.

*'''Salt stress upregulated''' levels of ''OsICE2'' '''protein''' but had '''no effect''' on OsICE2 '''mRNA''' levels. RT-PCR revealed that '''cold stress increased''' the levels of ''OsICE1'' and ''OsICE2'' proteins but did not enhance the expression of their genes. ''OsICE1'' and ''OsICE2'' are regulated mainly '''by post-translational mechanisms''', in a manner similar to that of ''Arabidopsis'' ICE1<ref name="ref1"/>.

===Evolution===
[[File: OsICE2 phylogenic1.jpg|right|thumb|250px|'''Figure 1.''' ''Phylogenic tree of ICE (Inducer of CBF Expression) homologs.(from reference <ref name="ref1"/>).'']]
*A '''phylogenetic tree''' of '''ICE homologs''' in '''dicots''' and '''monocots''', using ''Arabidopsis'' PIF3 and human c-myc as outgroups, showed that ICE-related genes can be classified into '''monocot and dicot subfamilies''' (Figure 1).

*''OsICE1'' and ''OsICE2'' share '''very similar sets of motifs''', notably '''an acidic domain''', '''a Ser-rich domain''', '''a bHLH domain''', and '''a possible zipper region''', with ''Arabidopsis'' ''ICE1'', although ''OsICE2'' has a shorter junction region between the acidic region and the Ser-rich region in the amino terminus than ''OsICE1'' and ''Arabidopsis ICE1''<ref name="ref1"/>.

*Although ''OsICE1'' and ''OsICE2'' have '''different predicted molecular masses''', they share '''48% similarity''' at the '''amino acid level'''. They also have '''similarities''' of '''39%''' and '''45%''', respectively, to ''Arabidopsis''<ref name="ref1"/>.

==Labs working on this gene==
*Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan
*Department of Bioresource Sciences, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
*School of Agriculture, Kyushu University, Fukuoka 812-8581, Japan

==References==
<references>
* <ref name="ref1">
Nakamura J, Yuasa T, Huong T T, et al. Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation[J]. Plant biotechnology, 2011, 28(3): 303-309.
</ref>
* <ref name="ref2">
Chen Y, Li F, Ma Y, et al. Overexpression of OrbHLH001, a putative helix–loop–helix transcription factor, causes increased expression of AKT1 and maintains ionic balance under salt stress in rice[J]. Journal of plant physiology, 2013, 170(1): 93-100.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Os01g0274800

2017-05-07T16:15:09Z

Xysj2027: /* Evolution */

The rice '''''Os01g0274800''''' was reported as '''''csa''''' in 2010 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''CSA,csa,OsCSA'''''
[[File:7-Os01g0274800.png|right|thumb|527px|'''Figure 1.''' ''Comparison of the Wild Type and the csa Mutant.<ref name="ref1" />.'']]

===Function===
* CSA is a key transcriptional regulator for sugar partitioning in rice during male reproductive development.
* This genen was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues.
* CSA Directly Regulates MST8 in Rice and MSTs have the ability to transport a variable range of monosaccharides across membrane barriers and have been shown to play an important role in assimilate supply for sink tissue development.
* CSA Regulates Carbon Accumulation in the Anthersand is Required for Anther Development and Pollen Maturation.The control of sugar partitioning by CSA greatly affects male reproductive tissue development in rice<ref name="ref1" />.

===Phenotypic analysis===
*Carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs. In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile. The csa mutant had reduced accumulation of 14 C-labeled sugars in anther sink tissue.
===Expression===
* The expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers.
* The CSA gene is preferentially expressed in the vascular tissue and the tapetum of the anther, as well as in other sinks<ref name="ref2" />.
* The CSA transcripts were undetectable in stem and leaf, but detectable in root. In the sterile empty glume, which surrounds the rice flower, no CSA expression signal was observed.
* Strong expression of CSA was detected in the lemma and palea and weaker expression in the pistil and seed.CSA is likely expressed in the anther wall layers at the early stages.<ref name="ref1" />

===Evolution===
* CSA was located between two InDel markers Z134 and Z138, which define a region of 23 kb.

==Labs working on this gene==
# School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
# Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education, Shanghai Jiao Tong University, Shanghai 200240, China
# Department of Horticulture, Michigan State University, East Lansing, Michigan 48824
# State Key Laboratory of Genetic Engineering, Institute of Plant Biology, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai 200433, China
# Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16082
==References==
<references>
<ref name="ref1">The Plant Cell, Vol. 22: 672–689, March 2010, www.plantcell.org ã 2010 American Society of Plant Biologists.Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.</ref>
<ref name="ref2">Ohdan, T., Francisco, P.B., Jr., Sawada, T., Hirose, T., Terao, T., Satoh, H., and Nakamura, Y. (2005). Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J. Exp. Bot. 56: 3229–3244.</ref>
</references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os01g0274800

2017-05-07T16:14:42Z

Xysj2027: /* Expression */

The rice '''''Os01g0274800''''' was reported as '''''csa''''' in 2010 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''CSA,csa,OsCSA'''''
[[File:7-Os01g0274800.png|right|thumb|527px|'''Figure 1.''' ''Comparison of the Wild Type and the csa Mutant.<ref name="ref1" />.'']]

===Function===
* CSA is a key transcriptional regulator for sugar partitioning in rice during male reproductive development.
* This genen was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues.
* CSA Directly Regulates MST8 in Rice and MSTs have the ability to transport a variable range of monosaccharides across membrane barriers and have been shown to play an important role in assimilate supply for sink tissue development.
* CSA Regulates Carbon Accumulation in the Anthersand is Required for Anther Development and Pollen Maturation.The control of sugar partitioning by CSA greatly affects male reproductive tissue development in rice<ref name="ref1" />.

===Phenotypic analysis===
*Carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs. In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile. The csa mutant had reduced accumulation of 14 C-labeled sugars in anther sink tissue.
===Expression===
* The expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers.
* The CSA gene is preferentially expressed in the vascular tissue and the tapetum of the anther, as well as in other sinks<ref name="ref2" />.
* The CSA transcripts were undetectable in stem and leaf, but detectable in root. In the sterile empty glume, which surrounds the rice flower, no CSA expression signal was observed.
* Strong expression of CSA was detected in the lemma and palea and weaker expression in the pistil and seed.CSA is likely expressed in the anther wall layers at the early stages.<ref name="ref1" />

===Evolution===
* we know CSA was located between two InDel markers Z134 and Z138, which define a region of 23 kb.

==Labs working on this gene==
# School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
# Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education, Shanghai Jiao Tong University, Shanghai 200240, China
# Department of Horticulture, Michigan State University, East Lansing, Michigan 48824
# State Key Laboratory of Genetic Engineering, Institute of Plant Biology, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai 200433, China
# Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16082
==References==
<references>
<ref name="ref1">The Plant Cell, Vol. 22: 672–689, March 2010, www.plantcell.org ã 2010 American Society of Plant Biologists.Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.</ref>
<ref name="ref2">Ohdan, T., Francisco, P.B., Jr., Sawada, T., Hirose, T., Terao, T., Satoh, H., and Nakamura, Y. (2005). Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J. Exp. Bot. 56: 3229–3244.</ref>
</references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os03g0786400

2017-05-07T16:14:16Z

Xysj2027: /* Labs working on this gene */

The rice '''''Os03g0786400''''' was reported as '''''DST''''' in 2013 by researchers from China <ref name="ref1" /> .

==Annotated Information==
[[File:16-Os03g0786400.png|right|thumb|527px|'''Figure S1.''' ''Phenotypic characterization of NIL DST REG1/reg1 plants<ref name="ref1" />.'']]

===Gene Symbol===
*'''''Os03g0786400''''' '''''<=>''''' '''''DST, OsDST'''''

===Function===
* The zinc finger transcription factor DROUGHT AND SALT TOLERANCE ('''''DST''''') directly regulates OsCKX2 expression in the reproductive meristem.
* '''''DST'''''-directed expression of '''''OsCKX2''''' regulates CK accumulation in the SAM and, therefore, controls the number of the reproductive organs.
* A semidominant allele of the '''''DST''''' gene, perturbs '''''DST'''''-directed regulation of '''''OsCKX2''''' expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number.
* '''''DST''''' is a unique regulator of reproductive meristem activity.
* '''''DST''''' may be explored to facilitate the genetic enhancement of grain production in rice and other small grain cereals<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> <ref name="ref4" /> <ref name="ref5" /> .

===Phenotypic analysis===
* '''''DST''''' reg1 Enhances Grain Production in both indica and jopanic Rice.
* All transgenic plants overexpressing a wild-type DST allele (DSTREG1) showed reduced plant stature with less panicle branches and decreased grain number.
* In contrast, the DST RNA interference (RNAi) transgenic plants showed increased panicle branches and enhanced grain number.
* Similarly, transgenic plants overexpressing the reg1 mutant allele of DST (DST reg1 ) had increased panicle branches and produced more grains.

===Expression===
* DST is located in the nucleus with transcriptional activation and it will express momentarily down under the condition of salt stress and osmotic stress, then recovered to pre-treatment levels.

==Labs working on this gene==
* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China;
* State Key Laboratory of Hybrid Rice, China National Hybrid Rice Research and Development Center, Changsha 410125, China;
* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China; * Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072, China

==References==
<references>
<ref name="ref1">Shuyu Li;Bingran Zhao;Dingyang Yuan; Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression; Proceedings of the National Academy of Sciences, 2013, 110(8): 3167-3172</ref>
<ref name="ref2"> Xin-Yuan Huang;Dai-Yin Chao; A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control; GENES & DEVELOPMENT, 2009, 23(15): 1805-1817</ref>
<ref name="ref3"> Wolfe SA, Nekludova L, Pabo CO(2000) DNA recognition by Cys(2)His(2) zinc finger proteins. Annu Rev Biophys Biomol Struct 29:183–212.</ref>
<ref name="ref4"> Sakamoto H, Maruyama K, Sakuma Y, Meshi T, Iwabuchi M, Shinozaki K, Yamaguchi-Shinozaki K(2004) Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol 136:2734–2746.</ref>
<ref name="ref5"> Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H(2007) Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318:1302–1305.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os05g0580500

2017-05-07T16:12:09Z

Xysj2027: /* References */

The rice Os05g0580500 was reported as '''''Rad21/Rec8''''' <ref name="ref1"/> in 2006, by researchers from China

==Annotated Information==
===Gene Symbol===
*'''''Os05g0580500''''' '''<=>''' '''''OsRAD21-4, OsREC8, OsRad21-4, REC8'''''

===Function===
* '''''Rad21/Rec8''''' is an important component and key regulator of cohesins. '''''OsRAD21-4''''', a '''''RAD21'''''-like gene from rice Zhonghua 10 (Oryza sativa L. ssp.japonica), is a single-copy gene in the rice genome and essential for eﬃcient meiosis.

* '''''OsRad21-4''''' is composed of 20 exons and 19 introns.<ref name="ref1" /> It encodes a relatively hydrophilic protein and contains the entire Pfam04825 and Pfam04824 domains (spanning amino acids 1–115 and 554–608, respectively) (Figure 2A), of which Pfam04825 is highly conserved in all known members and Pfam04824 present in most of the '''''Rad21/Rec8''''' family.<ref name="ref1" /><ref name="ref2" /> The two domain regions are spaced by a long linker sequence (amino acids 116-553).<ref name="ref1" />
* This linker sequence contains a potential nuclear targeting motif at positions 272–279 (KRKKRRKD), 2 separase recognition sites at 411–421 (ADDIEKLRGNT) and 420–430 (NTSGEYGRDYD) and a PEST motif at 511– 534 (RLSDVGPTPDLLEEIEPTQTPYEK) (Figure 2A)<ref name="ref1" />. These motifs are proposed to be implicated in function regulation in cohesion establishment and disassociation.<ref name="ref1" /><ref name="ref3" />
* The deﬁciency of '''''OsRad21-4''''' at the mRNA and protein is correlated with pollen cell sterility phenotype.(Figure6)<ref name="ref1" /> '''''OsRad21-4''''' was essential to meiosis. (Figure7, Figure8)<ref name="ref1" /> In addtion, '''''OsRad21-4''''' is responsible for the pairing of some homologous chromosomes.(Figure9, Figure10)<ref name="ref1" />

===Expression===
[[File:F23.png|274px|thumb|right|Figure2(B)]]
* '''''OsRad21-4''''' is present in the rice genome as a single-copy gene.<ref name="ref1" /> The mRNA and protein of '''''OsRad21-4''''' were expressed preferentially in young ﬂowers where the pollen mother cells (PMCs) were in pre-meiotic stages.<ref name="ref1" /> As shown in Figure 3A, '''''OsRad21-4''''' was expressed preferentially in ﬂowers, weakly in leaves and barely in buds and roots.<ref name="ref1" />
* Furthermore, '''''OsRad21-4''''' was expressed dominantly just before the premeiotic stage of PMCs.(Figure 3C)<ref name="ref1" /> This gene should function in premeiotic and meiotic PMCs, which is consistent with this notion that meiotic cohesion is established at the pre-meiotic S phase. (Figur 4)<ref name="ref4" />

===Evolution===
* '''''OsRad21-4''''' is a rice orthologue of yeast Rec8.(Figure2(C))<ref name="ref1" /> In rice, '''''OsRad21-4''''' is required for homologous pairing and segregation.<ref name="ref1" /> It might be responsible mainly for sister chromatid-arm cohesion and to a lesser extent or not at all for centromere cohesion.<ref name="ref1" />
* In addition, '''''OsRad21-4''''' is required for chromosome condensation.<ref name="ref1" /> Besides, Zhang et al suggest possible link between Rec8 proteins and chromosome fragmentation in higher eukaryotes.<ref name="ref1" /> Furthermore, appearance of micronuclei and/or undetached dinuclei-containing spores and unequal cell division at anaphase I and II in the deﬁcient plants were similar to those reported in mutants of genes related to other early events of meiosis prophase I<ref name="ref5" />, suggesting possible interaction of early events of prophase I.

==Labs working on this gene==
1.Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Research Center of Molecular & Developmental Biology, Institute of Botany, Chinese academy of Sciences, Beijing 100093,China

2.Graduate School of the Chinese Academy of Sciences, Beijing 100049, China

3.Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113-0033, Japan

4.PRESTO, Japan Science and Technology Corporation, Kawaguchi, Saitama 332-0012, Japan

5.Imperial Cancer Research Fund, 44 Lincoln's Inn Field, London WC2A 3PX, UK

6.Division of Natural Science, Osaka Kyoiku University, 4-698-1 Asahigaoka, Kashiwara, Osaka 582-8582, Japan

7.Faculty of Health Sciences for Welfare, Kansai University of Welfare Sciences, 3-11-1 Asahigaoka, Osaka 582-0026, Japan

==References==
<references>
* <ref name="ref1">
Zhang L, Tao J, Wang S, et al. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis[J]. Plant molecular biology, 2006, 60(4): 533-554.</ref>
* <ref name="ref2">
Zhang L R, Tao J Y, Wang T. Molecular characterization of OsRAD21‐1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion*[J]. Journal of experimental botany, 2004, 55(399): 1149-1152.</ref>
*<ref name="ref3">Nasmyth K. Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis[J]. Annual review of genetics, 2001, 35(1): 673-745.</ref>
*<ref name="ref4">Watanabe Y, Yokobayashi S, Yamamoto M, et al. Pre-meiotic S phase is linked to reductional chromosome segregation and recombination[J]. Nature, 2001, 409(6818): 359-363.</ref>
*<ref name="ref5">Ma H. Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants[J]. Annu. Rev. Plant Biol., 2005, 56: 393-434.</ref>
</references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0580500

2017-05-07T16:11:51Z

Xysj2027: /* Expression */

The rice Os05g0580500 was reported as '''''Rad21/Rec8''''' <ref name="ref1"/> in 2006, by researchers from China

==Annotated Information==
===Gene Symbol===
*'''''Os05g0580500''''' '''<=>''' '''''OsRAD21-4, OsREC8, OsRad21-4, REC8'''''

===Function===
* '''''Rad21/Rec8''''' is an important component and key regulator of cohesins. '''''OsRAD21-4''''', a '''''RAD21'''''-like gene from rice Zhonghua 10 (Oryza sativa L. ssp.japonica), is a single-copy gene in the rice genome and essential for eﬃcient meiosis.

* '''''OsRad21-4''''' is composed of 20 exons and 19 introns.<ref name="ref1" /> It encodes a relatively hydrophilic protein and contains the entire Pfam04825 and Pfam04824 domains (spanning amino acids 1–115 and 554–608, respectively) (Figure 2A), of which Pfam04825 is highly conserved in all known members and Pfam04824 present in most of the '''''Rad21/Rec8''''' family.<ref name="ref1" /><ref name="ref2" /> The two domain regions are spaced by a long linker sequence (amino acids 116-553).<ref name="ref1" />
* This linker sequence contains a potential nuclear targeting motif at positions 272–279 (KRKKRRKD), 2 separase recognition sites at 411–421 (ADDIEKLRGNT) and 420–430 (NTSGEYGRDYD) and a PEST motif at 511– 534 (RLSDVGPTPDLLEEIEPTQTPYEK) (Figure 2A)<ref name="ref1" />. These motifs are proposed to be implicated in function regulation in cohesion establishment and disassociation.<ref name="ref1" /><ref name="ref3" />
* The deﬁciency of '''''OsRad21-4''''' at the mRNA and protein is correlated with pollen cell sterility phenotype.(Figure6)<ref name="ref1" /> '''''OsRad21-4''''' was essential to meiosis. (Figure7, Figure8)<ref name="ref1" /> In addtion, '''''OsRad21-4''''' is responsible for the pairing of some homologous chromosomes.(Figure9, Figure10)<ref name="ref1" />

===Expression===
[[File:F23.png|274px|thumb|right|Figure2(B)]]
* '''''OsRad21-4''''' is present in the rice genome as a single-copy gene.<ref name="ref1" /> The mRNA and protein of '''''OsRad21-4''''' were expressed preferentially in young ﬂowers where the pollen mother cells (PMCs) were in pre-meiotic stages.<ref name="ref1" /> As shown in Figure 3A, '''''OsRad21-4''''' was expressed preferentially in ﬂowers, weakly in leaves and barely in buds and roots.<ref name="ref1" />
* Furthermore, '''''OsRad21-4''''' was expressed dominantly just before the premeiotic stage of PMCs.(Figure 3C)<ref name="ref1" /> This gene should function in premeiotic and meiotic PMCs, which is consistent with this notion that meiotic cohesion is established at the pre-meiotic S phase. (Figur 4)<ref name="ref4" />

===Evolution===
* '''''OsRad21-4''''' is a rice orthologue of yeast Rec8.(Figure2(C))<ref name="ref1" /> In rice, '''''OsRad21-4''''' is required for homologous pairing and segregation.<ref name="ref1" /> It might be responsible mainly for sister chromatid-arm cohesion and to a lesser extent or not at all for centromere cohesion.<ref name="ref1" />
* In addition, '''''OsRad21-4''''' is required for chromosome condensation.<ref name="ref1" /> Besides, Zhang et al suggest possible link between Rec8 proteins and chromosome fragmentation in higher eukaryotes.<ref name="ref1" /> Furthermore, appearance of micronuclei and/or undetached dinuclei-containing spores and unequal cell division at anaphase I and II in the deﬁcient plants were similar to those reported in mutants of genes related to other early events of meiosis prophase I<ref name="ref5" />, suggesting possible interaction of early events of prophase I.

==Labs working on this gene==
1.Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Research Center of Molecular & Developmental Biology, Institute of Botany, Chinese academy of Sciences, Beijing 100093,China

2.Graduate School of the Chinese Academy of Sciences, Beijing 100049, China

3.Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113-0033, Japan

4.PRESTO, Japan Science and Technology Corporation, Kawaguchi, Saitama 332-0012, Japan

5.Imperial Cancer Research Fund, 44 Lincoln's Inn Field, London WC2A 3PX, UK

6.Division of Natural Science, Osaka Kyoiku University, 4-698-1 Asahigaoka, Kashiwara, Osaka 582-8582, Japan

7.Faculty of Health Sciences for Welfare, Kansai University of Welfare Sciences, 3-11-1 Asahigaoka, Osaka 582-0026, Japan

==References==
<references>
* <ref name="ref1">
Zhang L, Tao J, Wang S, et al. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis[J]. Plant molecular biology, 2006, 60(4): 533-554.</ref>
* <ref name="ref2">
Zhang L R, Tao J Y, Wang T. Molecular characterization of OsRAD21‐1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion*[J]. Journal of experimental botany, 2004, 55(399): 1149-1152.</ref>
*<ref name="ref3">Nasmyth K. Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis[J]. Annual review of genetics, 2001, 35(1): 673-745.</ref>
*<ref name="ref4">Watanabe Y, Yokobayashi S, Yamamoto M, et al. Pre-meiotic S phase is linked to reductional chromosome segregation and recombination[J]. Nature, 2001, 409(6818): 359-363.</ref>
*<ref name="ref5">Ma H. Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants[J]. Annu. Rev. Plant Biol., 2005, 56: 393-434.</ref>
<references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0580500

2017-05-07T16:11:09Z

Xysj2027:

The rice Os05g0580500 was reported as '''''Rad21/Rec8''''' <ref name="ref1"/> in 2006, by researchers from China

==Annotated Information==
===Gene Symbol===
*'''''Os05g0580500''''' '''<=>''' '''''OsRAD21-4, OsREC8, OsRad21-4, REC8'''''

===Function===
* '''''Rad21/Rec8''''' is an important component and key regulator of cohesins. '''''OsRAD21-4''''', a '''''RAD21'''''-like gene from rice Zhonghua 10 (Oryza sativa L. ssp.japonica), is a single-copy gene in the rice genome and essential for eﬃcient meiosis.

* '''''OsRad21-4''''' is composed of 20 exons and 19 introns.<ref name="ref1" /> It encodes a relatively hydrophilic protein and contains the entire Pfam04825 and Pfam04824 domains (spanning amino acids 1–115 and 554–608, respectively) (Figure 2A), of which Pfam04825 is highly conserved in all known members and Pfam04824 present in most of the '''''Rad21/Rec8''''' family.<ref name="ref1" /><ref name="ref2" /> The two domain regions are spaced by a long linker sequence (amino acids 116-553).<ref name="ref1" />
* This linker sequence contains a potential nuclear targeting motif at positions 272–279 (KRKKRRKD), 2 separase recognition sites at 411–421 (ADDIEKLRGNT) and 420–430 (NTSGEYGRDYD) and a PEST motif at 511– 534 (RLSDVGPTPDLLEEIEPTQTPYEK) (Figure 2A)<ref name="ref1" />. These motifs are proposed to be implicated in function regulation in cohesion establishment and disassociation.<ref name="ref1" /><ref name="ref3" />
* The deﬁciency of '''''OsRad21-4''''' at the mRNA and protein is correlated with pollen cell sterility phenotype.(Figure6)<ref name="ref1" /> '''''OsRad21-4''''' was essential to meiosis. (Figure7, Figure8)<ref name="ref1" /> In addtion, '''''OsRad21-4''''' is responsible for the pairing of some homologous chromosomes.(Figure9, Figure10)<ref name="ref1" />

===Expression===
[[File:F23.png|274px|thumb|right|Figure2(B)]]
* '''''OsRad21-4''''' is present in the rice genome as a single-copy gene.<ref name="ref1" /> The mRNA and protein of '''''OsRad21-4''''' were expressed preferentially in young ﬂowers where the pollen mother cells (PMCs) were in pre-meiotic stages.<ref name="ref1" />
/>As shown in Figure 3A, '''''OsRad21-4''''' was expressed preferentially in ﬂowers, weakly in leaves and barely in buds and roots.<ref name="ref1" />
* Furthermore, '''''OsRad21-4''''' was expressed dominantly just before the premeiotic stage of PMCs.(Figure 3C)<ref name="ref1" /> This gene should function in premeiotic and meiotic PMCs, which is consistent with this notion that meiotic cohesion is established at the pre-meiotic S phase. (Figur 4)<ref name="ref4" />

===Evolution===
* '''''OsRad21-4''''' is a rice orthologue of yeast Rec8.(Figure2(C))<ref name="ref1" /> In rice, '''''OsRad21-4''''' is required for homologous pairing and segregation.<ref name="ref1" /> It might be responsible mainly for sister chromatid-arm cohesion and to a lesser extent or not at all for centromere cohesion.<ref name="ref1" />
* In addition, '''''OsRad21-4''''' is required for chromosome condensation.<ref name="ref1" /> Besides, Zhang et al suggest possible link between Rec8 proteins and chromosome fragmentation in higher eukaryotes.<ref name="ref1" /> Furthermore, appearance of micronuclei and/or undetached dinuclei-containing spores and unequal cell division at anaphase I and II in the deﬁcient plants were similar to those reported in mutants of genes related to other early events of meiosis prophase I<ref name="ref5" />, suggesting possible interaction of early events of prophase I.

==Labs working on this gene==
1.Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Research Center of Molecular & Developmental Biology, Institute of Botany, Chinese academy of Sciences, Beijing 100093,China

2.Graduate School of the Chinese Academy of Sciences, Beijing 100049, China

3.Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113-0033, Japan

4.PRESTO, Japan Science and Technology Corporation, Kawaguchi, Saitama 332-0012, Japan

5.Imperial Cancer Research Fund, 44 Lincoln's Inn Field, London WC2A 3PX, UK

6.Division of Natural Science, Osaka Kyoiku University, 4-698-1 Asahigaoka, Kashiwara, Osaka 582-8582, Japan

7.Faculty of Health Sciences for Welfare, Kansai University of Welfare Sciences, 3-11-1 Asahigaoka, Osaka 582-0026, Japan

==References==
<references>
* <ref name="ref1">
Zhang L, Tao J, Wang S, et al. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis[J]. Plant molecular biology, 2006, 60(4): 533-554.</ref>
* <ref name="ref2">
Zhang L R, Tao J Y, Wang T. Molecular characterization of OsRAD21‐1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion*[J]. Journal of experimental botany, 2004, 55(399): 1149-1152.</ref>
*<ref name="ref3">Nasmyth K. Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis[J]. Annual review of genetics, 2001, 35(1): 673-745.</ref>
*<ref name="ref4">Watanabe Y, Yokobayashi S, Yamamoto M, et al. Pre-meiotic S phase is linked to reductional chromosome segregation and recombination[J]. Nature, 2001, 409(6818): 359-363.</ref>
*<ref name="ref5">Ma H. Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants[J]. Annu. Rev. Plant Biol., 2005, 56: 393-434.</ref>
<references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0580500

2017-05-07T11:14:36Z

Xysj2027:

Please input one-sentence summary here.

==Annotated Information==
'''''Rad21/Rec8''''' is an important component and key regulator of cohesins. '''''OsRAD21-4''''', a '''''RAD21'''''-like gene from rice Zhonghua 10 (Oryza sativa L. ssp.japonica), is a single-copy gene in the rice genome and essential for eﬃcient meiosis.

===Function===
'''''OsRad21-4''''' is composed of 20 exons and 19 introns.<ref name="ref1" /> It encodes a relatively hydrophilic protein and contains the entire Pfam04825 and Pfam04824 domains (spanning amino acids 1–115 and 554–608, respectively) (Figure 2A), of which Pfam04825 is highly conserved in all known members and Pfam04824 present in most of the '''''Rad21/Rec8''''' family.<ref name="ref1" /><ref name="ref2" /> The two domain regions are spaced by a long linker sequence (amino acids 116-553).<ref name="ref1" /> This linker sequence contains a potential nuclear targeting motif at positions 272–279 (KRKKRRKD), 2 separase recognition sites at 411–421 (ADDIEKLRGNT) and 420–430 (NTSGEYGRDYD) and a PEST motif at 511– 534 (RLSDVGPTPDLLEEIEPTQTPYEK) (Figure 2A)<ref name="ref1" />. These motifs are proposed to be implicated in function regulation in cohesion establishment and disassociation.<ref name="ref1" /><ref name="ref3" /> The deﬁciency of '''''OsRad21-4''''' at the mRNA and protein is correlated with pollen cell sterility phenotype.(Figure6)<ref name="ref1" /> '''''OsRad21-4''''' was essential to meiosis. (Figure7, Figure8)<ref name="ref1" /> In addtion, '''''OsRad21-4''''' is responsible for the pairing of some homologous chromosomes.(Figure9, Figure10)<ref name="ref1" />

===Expression===
'''''OsRad21-4''''' is present in the rice genome as a single-copy gene.<ref name="ref1" /> The mRNA and protein of '''''OsRad21-4''''' were expressed preferentially in young ﬂowers where the pollen mother cells (PMCs) were in pre-meiotic stages.<ref name="ref1" /> '''''OsRAD21-4''''' cDNA cloned here is 2133 bp long and has a 5' UTR of 54 bp, a 3' UTR of 255 bp and an ORF of 1824 bp encoding a deduced polypeptide of 608 amino acids (OsRad21-4).<ref name="ref1" /> OsRad21-4 has a calculated molecular mass of 68.5 kDa and an isoelectric point (pI) of 5.45.<ref name="ref1" /> The protein is a nucleus-localizing protein.(Figure 2B)<ref name="ref1" />[[File:F23.png|200px|thumb|left|Figure2(B)]] As shown in Figure 3A, '''''OsRad21-4''''' was expressed preferentially in ﬂowers, weakly in leaves and barely in buds and roots.<ref name="ref1" /> Furthermore, '''''OsRad21-4''''' was expressed dominantly just before the premeiotic stage of PMCs.(Figure 3C)<ref name="ref1" /> This gene should function in premeiotic and meiotic PMCs, which is consistent with this notion that meiotic cohesion is established at the pre-meiotic S phase. (Figur 4)<ref name="ref4" />

===Evolution===
'''''OsRad21-4''''' is a rice orthologue of yeast Rec8.(Figure2(C))<ref name="ref1" /> In rice, '''''OsRad21-4''''' is required for homologous pairing and segregation.<ref name="ref1" /> It might be responsible mainly for sister chromatid-arm cohesion and to a lesser extent or not at all for centromere cohesion.<ref name="ref1" /> In addition, '''''OsRad21-4''''' is required for chromosome condensation.<ref name="ref1" /> Besides, Zhang et al suggest possible link between Rec8 proteins and chromosome fragmentation in higher eukaryotes.<ref name="ref1" /> Furthermore, appearance of micronuclei and/or undetached dinuclei-containing spores and unequal cell division at anaphase I and II in the deﬁcient plants were similar to those reported in mutants of genes related to other early events of meiosis prophase I<ref name="ref5" />, suggesting possible interaction of early events of prophase I.

==Labs working on this gene==
1.Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Research Center of Molecular & Developmental Biology, Institute of Botany, Chinese academy of Sciences, Beijing 100093,China

2.Graduate School of the Chinese Academy of Sciences, Beijing 100049, China

3.Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113-0033, Japan

4.PRESTO, Japan Science and Technology Corporation, Kawaguchi, Saitama 332-0012, Japan

5.Imperial Cancer Research Fund, 44 Lincoln's Inn Field, London WC2A 3PX, UK

6.Division of Natural Science, Osaka Kyoiku University, 4-698-1 Asahigaoka, Kashiwara, Osaka 582-8582, Japan

7.Faculty of Health Sciences for Welfare, Kansai University of Welfare Sciences, 3-11-1 Asahigaoka, Osaka 582-0026, Japan

==References==
<references>
* <ref name="ref1">
Zhang L, Tao J, Wang S, et al. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis[J]. Plant molecular biology, 2006, 60(4): 533-554.</ref>
* <ref name="ref2">
Zhang L R, Tao J Y, Wang T. Molecular characterization of OsRAD21‐1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion*[J]. Journal of experimental botany, 2004, 55(399): 1149-1152.</ref>
*<ref name="ref3">Nasmyth K. Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis[J]. Annual review of genetics, 2001, 35(1): 673-745.</ref>
*<ref name="ref4">Watanabe Y, Yokobayashi S, Yamamoto M, et al. Pre-meiotic S phase is linked to reductional chromosome segregation and recombination[J]. Nature, 2001, 409(6818): 359-363.</ref>
*<ref name="ref5">Ma H. Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants[J]. Annu. Rev. Plant Biol., 2005, 56: 393-434.</ref>
<references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os08g0163400

2017-05-07T11:13:21Z

Xysj2027:

The rice '''''Os08g0163400''''' was reported as '''''OsSIG1''''' in 2007 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os08g0163400''''' '''''<=>''''' '''''OsSIG1,SIG1'''''
===Function===
* Sigma factors encoded by the nucleus of plants confer promoter specificity on the bacterial-type RNA polymerase in chloroplasts.
* '''''OsSIG1''''' plays an important role in the maintenance of photosynthetic activity in mature chloroplasts of rice by regulating expression of chloroplast genes for components of photosystem I. <ref name="ref1" />

===Phenotypic analysis===
* The OsSIG1 )/) plants were found to be fertile but they manifested an approximately one-third reduction in the chlorophyll content of mature leaves.
* Quantitative RT-PCR and northern blot analyses of chloroplast gene expression revealed that the abundance of transcripts derived from the psaA operon was markedly reduced in OsSIG1 )/) plants compared with that in wild-type homozygotes.
* This effect was accompanied by a reduction in the abundance of the core protein complex (PsaA–PsaB) of photosystem I. Analysis of chlorophyll fluorescence also revealed a substantial reduction in the rate of electron transfer from photosystem II to photosystem I in the OsSIG1 mutants.

===Expression===
* The transcripts of OsSIG1 accumulate relatively late during leaf development.<ref name="ref2" />

You can also add sub-section(s) at will.

==Labs working on this gene==
* Cell-Free Science and Technology Research Center, Ehime University, Matsuyama 790-8577, Japan,
* Experimental Farm, Kyoto University, Takatsuki, Osaka 569-0096, Japan,
* The Venture Business Laboratory, Ehime University, Matsuyama 790-8577, Japan,
* Department of Integrated Biosciences, University of Tokyo, Kashiwa, Chiba 277-8562, Japan,
* Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan,
* National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan

==References==
<references>
<ref name="ref1"> Tozawa, Y, Masayoshi Teraishi., et al. (2007). "The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts." The Plant Journal 52(1): 124-132.</ref>
<ref name="ref2">Kasai K , Kawagishi-Kobayashi M ., et al. (2004). "Differential expression of three plastidial sigma factors, OsSIG1, OsSIG2A, and OsSIG2B, during leaf development in rice.." Biosci Biotechnol Biochem 2004 Apr;68 (4):973-7.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os08g0163400

2017-05-07T11:08:32Z

Xysj2027: /* References */

RAP-DB：Os08g0163400 have an another name :OsSIG1..<ref name="ref2" />

==Annotated Information==
===Function===
Sigma factors encoded by the nucleus of plants confer promoter specificity on the bacterial-type RNA polymerase in chloroplasts. We previously showed that transcripts of OsSIG1, which encodes one such sigma factor in rice, accumulate relatively late during leaf development. We have now isolated and characterized two allelic mutants of OsSIG1, in which OsSIG1 is disrupted by insertion of the retrotransposon Tos17, in order to characterize the functions of OsSIG1. The OsSIG1)/) plants were found to be fertile but they manifested an approximately one-third reduction in the chlorophyll content of mature leaves. Quantitative RT-PCR and northern blot analyses of chloroplast gene expression revealed that the abundance of transcripts derived from the psaA operon was markedly reduced in OsSIG1)/) plants compared with that in wild-type homozygotes. This effect was accompanied by a reduction in the abundance of the core protein complex (PsaA–PsaB) of photosystem I. Analysis of chlorophyll fluorescence also revealed a substantial reduction in the rate of electron transfer from photosystem II to photosystem I in the OsSIG1 mutants. Our results thus indicate that OsSIG1 plays an important role in the maintenance of photosynthetic activity in mature chloroplasts of rice by regulating expression of chloroplast genes for components of photosystem I..<ref name="ref1" />

===Expression===
We isolated and characterized two rice nuclear genes, OsSIG2A and OsSIG2B, encoding the putative sigma-factor of the plastid RNA polymerase. Deduced protein sequences predicted a plastid-localizing signal in the N-terminus and subsequent polypeptides similar to known SIG2 proteins. Gene expression analysis revealed that the OsSIG2A transcript is more abundant than the OsSIG2B transcript in all tissues tested and that both rice SIG2s are expressed from earlier stages of leaf development than that in the case of OsSIG1. These results indicate differential expression of SIG genes in leaf morphogenesis, suggesting the existence of tissue- and stage-specific functions of SIG proteins for transcriptional regulation of chloroplast genes in plant development.<ref name="ref3" />

We previously showed that the maximal level of OsSIG1 expression occurs at a later stage of leaf development than does that of OsSIG2A or OsSIG2B expression (Kasai et al., 2004). To characterize further the expression of OsSIG1, we performed northern analysis with total RNA isolated from three portions of the expanded leaves of 20-day-old Nipponbare (WT) plants. The amount of OsSIG1 mRNA was highest in the middle region of the leaf blades (Figure 2)<ref name="ref1" />

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
1 Cell-Free Science and Technology Research Center, Ehime University, Matsuyama 790-8577, Japan,

2 Experimental Farm, Kyoto University, Takatsuki, Osaka 569-0096, Japan,

3 The Venture Business Laboratory, Ehime University, Matsuyama 790-8577, Japan,

4 Department of Integrated Biosciences, University of Tokyo, Kashiwa, Chiba 277-8562, Japan,

5 Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan,

6 National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan

==References==
<references>
<ref name="ref1"> Tozawa, Y, Masayoshi Teraishi., et al. (2007). "The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts." The Plant Journal 52(1): 124-132.</ref>
<ref name="ref2">Kasai K , Kawagishi-Kobayashi M ., et al. (2004). "Differential expression of three plastidial sigma factors, OsSIG1, OsSIG2A, and OsSIG2B, during leaf development in rice.." Biosci Biotechnol Biochem 2004 Apr;68 (4):973-7.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 8]]
[[Category:Chromosome 8]]

Os04g0463400

2017-05-07T11:04:32Z

Xysj2027:

The rice '''''Os04g0463400''''' was reported as '''''OsVIT1''''' in 2012 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os04g0463400''''' '''''<=>''''' '''''OsVIT1,VIT1'''''

===Function===
[[File:OsVIT2.jpg|right|thumb|327px|'''Figure 1.'''Subcellular localization of OsVIT1 and OsVIT2<ref name="ref1" />.]]

* OsVIT1 and OsVIT2 may function primarily in flag leaves to mediate vacuolar sequestration of Fe and Zn, due to highly expression levels of ''OsVIT1'' and ''OsVIT2'' in flag leaves rather than embryos.
* And they might also mediate allocation of Fe/Zn between flag leaves and the grains<ref name="ref1" />.

===Phenotypic analysis===
* Knockdown of the vacuolar Fe transporter gene OsVIT1 or OsVIT2 may be useful to further increase the Fe concentration of seeds <ref name="ref2" />.

===Expression===
* This gene expresses in flag leaf sheaths with a significantly high level, but it can also be detected in various tissues/organs including embryos at low levels.
* Different from ''OsVIT2'', ''OsVIT1'' expresses mainly in flag leaf blades, but also occurs ubiquitously in various tissues/organs including embryos with relatively low levels<ref name="ref1" />.
* OsVIT2 was quickly induced in rice seedling roots and shoots after the treatment of 4.5 mM FeSO4, but OsVIT1 was not highly induced.
* Fe starvation caused downregulated ''OsVIT2'' expression in roots and shoots, and no OsVIT1 response until 7 days after treatment in roots.
* These data suggest that OsVIT1 may represent a housekeeping mechanism for Fe accumulation in vacuoles, while OsVIT2 functions more in response to external Fe levels <ref name="ref1" />.

===Subcellular localization===
* OsVIT1 and OsVIT2 were localized to vacuolar membrane<ref name="ref1" /> when they combined with enhanced green fluorescent protein and expressed(Figure 1).

===Evolution===
* ''OsVIT2'' locates in chromosome 9, and encodes putative protein as the vacuolar iron transporter with 247 amino acids which shares 79.8% amino acid similarity with the VIT in ''Arabidopsis''.
* There are five conserved transmembrane domains in OsVIT2 by further analyses.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
*Zhejiang Province Key Laboratory of Technology for Improving Agricultural Product Quality, School of Agricultural and Food Science, Zhejiang Agriculture and Forest University, China

==References==
<references>
<ref name="ref1">Yu Zhang, Yong-Han Xu, Hong-Yin Yi, and Ji-Ming Gong. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. The Plant Journal (2012)72, 400–410.</ref>
<ref name="ref2">Hiroshi Masuda, May Sann Aung, and Naoko K Nishizawa. Iron biofortification of rice using different transgenic approaches. Rice 2013,6:40.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

Os09g0396900

2017-05-07T11:02:19Z

Xysj2027: /* Function */

The rice '''''Os09g0396900''''' was reported as '''''OsVIT2''''' in 2012 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os09g0396900''''' '''''<=>''''' '''''OsVIT2,VIT2'''''

===Function===
[[File:OsVIT2.jpg|right|thumb|327px|'''Figure 1.'''Subcellular localization of OsVIT1 and OsVIT2<ref name="ref1" />.]]

* OsVIT1 and OsVIT2 may function primarily in flag leaves to mediate vacuolar sequestration of Fe and Zn, due to highly expression levels of ''OsVIT1'' and ''OsVIT2'' in flag leaves rather than embryos.
* And they might also mediate allocation of Fe/Zn between flag leaves and the grains<ref name="ref1" />.

===Phenotypic analysis===
* Knockdown of the vacuolar Fe transporter gene OsVIT1 or OsVIT2 may be useful to further increase the Fe concentration of seeds <ref name="ref2" />.

===Expression===
* This gene expresses in flag leaf sheaths with a significantly high level, but it can also be detected in various tissues/organs including embryos at low levels.
* Different from ''OsVIT2'', ''OsVIT1'' expresses mainly in flag leaf blades, but also occurs ubiquitously in various tissues/organs including embryos with relatively low levels<ref name="ref1" />.
* OsVIT2 was quickly induced in rice seedling roots and shoots after the treatment of 4.5 mM FeSO4, but OsVIT1 was not highly induced.
* Fe starvation caused downregulated ''OsVIT2'' expression in roots and shoots, and no OsVIT1 response until 7 days after treatment in roots.
* These data suggest that OsVIT1 may represent a housekeeping mechanism for Fe accumulation in vacuoles, while OsVIT2 functions more in response to external Fe levels <ref name="ref1" />.

===Subcellular localization===
* OsVIT1 and OsVIT2 were localized to vacuolar membrane<ref name="ref1" /> when they combined with enhanced green fluorescent protein and expressed(Figure 1).

===Evolution===
* ''OsVIT2'' locates in chromosome 9, and encodes putative protein as the vacuolar iron transporter with 247 amino acids which shares 79.8% amino acid similarity with the VIT in ''Arabidopsis''.
* There are five conserved transmembrane domains in OsVIT2 by further analyses.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
*Zhejiang Province Key Laboratory of Technology for Improving Agricultural Product Quality, School of Agricultural and Food Science, Zhejiang Agriculture and Forest University, China

==References==
<references>
<ref name="ref1">Yu Zhang, Yong-Han Xu, Hong-Yin Yi, and Ji-Ming Gong. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. The Plant Journal (2012)72, 400–410.</ref>
<ref name="ref2">Hiroshi Masuda, May Sann Aung, and Naoko K Nishizawa. Iron biofortification of rice using different transgenic approaches. Rice 2013,6:40.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0396900

2017-05-07T11:02:05Z

Xysj2027: /* Function */

The rice '''''Os09g0396900''''' was reported as '''''OsVIT2''''' in 2012 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os09g0396900''''' '''''<=>''''' '''''OsVIT2,VIT2'''''

===Function===
[[File:OsVIT2.jpg|right|thumb|250px|'''Figure 1.'''Subcellular localization of OsVIT1 and OsVIT2<ref name="ref1" />.]]

* OsVIT1 and OsVIT2 may function primarily in flag leaves to mediate vacuolar sequestration of Fe and Zn, due to highly expression levels of ''OsVIT1'' and ''OsVIT2'' in flag leaves rather than embryos.
* And they might also mediate allocation of Fe/Zn between flag leaves and the grains<ref name="ref1" />.

===Phenotypic analysis===
* Knockdown of the vacuolar Fe transporter gene OsVIT1 or OsVIT2 may be useful to further increase the Fe concentration of seeds <ref name="ref2" />.

===Expression===
* This gene expresses in flag leaf sheaths with a significantly high level, but it can also be detected in various tissues/organs including embryos at low levels.
* Different from ''OsVIT2'', ''OsVIT1'' expresses mainly in flag leaf blades, but also occurs ubiquitously in various tissues/organs including embryos with relatively low levels<ref name="ref1" />.
* OsVIT2 was quickly induced in rice seedling roots and shoots after the treatment of 4.5 mM FeSO4, but OsVIT1 was not highly induced.
* Fe starvation caused downregulated ''OsVIT2'' expression in roots and shoots, and no OsVIT1 response until 7 days after treatment in roots.
* These data suggest that OsVIT1 may represent a housekeeping mechanism for Fe accumulation in vacuoles, while OsVIT2 functions more in response to external Fe levels <ref name="ref1" />.

===Subcellular localization===
* OsVIT1 and OsVIT2 were localized to vacuolar membrane<ref name="ref1" /> when they combined with enhanced green fluorescent protein and expressed(Figure 1).

===Evolution===
* ''OsVIT2'' locates in chromosome 9, and encodes putative protein as the vacuolar iron transporter with 247 amino acids which shares 79.8% amino acid similarity with the VIT in ''Arabidopsis''.
* There are five conserved transmembrane domains in OsVIT2 by further analyses.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
*Zhejiang Province Key Laboratory of Technology for Improving Agricultural Product Quality, School of Agricultural and Food Science, Zhejiang Agriculture and Forest University, China

==References==
<references>
<ref name="ref1">Yu Zhang, Yong-Han Xu, Hong-Yin Yi, and Ji-Ming Gong. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. The Plant Journal (2012)72, 400–410.</ref>
<ref name="ref2">Hiroshi Masuda, May Sann Aung, and Naoko K Nishizawa. Iron biofortification of rice using different transgenic approaches. Rice 2013,6:40.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0396900

2017-05-07T11:01:50Z

Xysj2027:

The rice '''''Os09g0396900''''' was reported as '''''OsVIT2''''' in 2012 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os09g0396900''''' '''''<=>''''' '''''OsVIT2,VIT2'''''

===Function===
[[File:OsVIT2.jpg|right|thumb|250px|'''Figure 1.'''Subcellular localization of OsVIT1 and OsVIT2<ref name="ref1" />.(a–c) Bright-field images of ''Arabidopsis'' protoplasts expressing enhanced green fluorescent protein (EGFP) (a), OsVIT1: EGFP (b) and OsVIT2: EGFP(c).(d–f) Fluorescence images of Arabidopsis protoplasts expressing EGFP (d), OsVIT1: EGFP (e) and OsVIT2: EGFP(f).(g–i) Merged fluorescence images of EGFP (g), OsVIT1: EGFP (h) and OsVIT2: EGFP (i). Bars = 10μm.]]

* OsVIT1 and OsVIT2 may function primarily in flag leaves to mediate vacuolar sequestration of Fe and Zn, due to highly expression levels of ''OsVIT1'' and ''OsVIT2'' in flag leaves rather than embryos.
* And they might also mediate allocation of Fe/Zn between flag leaves and the grains<ref name="ref1" />.

===Phenotypic analysis===
* Knockdown of the vacuolar Fe transporter gene OsVIT1 or OsVIT2 may be useful to further increase the Fe concentration of seeds <ref name="ref2" />.

===Expression===
* This gene expresses in flag leaf sheaths with a significantly high level, but it can also be detected in various tissues/organs including embryos at low levels.
* Different from ''OsVIT2'', ''OsVIT1'' expresses mainly in flag leaf blades, but also occurs ubiquitously in various tissues/organs including embryos with relatively low levels<ref name="ref1" />.
* OsVIT2 was quickly induced in rice seedling roots and shoots after the treatment of 4.5 mM FeSO4, but OsVIT1 was not highly induced.
* Fe starvation caused downregulated ''OsVIT2'' expression in roots and shoots, and no OsVIT1 response until 7 days after treatment in roots.
* These data suggest that OsVIT1 may represent a housekeeping mechanism for Fe accumulation in vacuoles, while OsVIT2 functions more in response to external Fe levels <ref name="ref1" />.

===Subcellular localization===
* OsVIT1 and OsVIT2 were localized to vacuolar membrane<ref name="ref1" /> when they combined with enhanced green fluorescent protein and expressed(Figure 1).

===Evolution===
* ''OsVIT2'' locates in chromosome 9, and encodes putative protein as the vacuolar iron transporter with 247 amino acids which shares 79.8% amino acid similarity with the VIT in ''Arabidopsis''.
* There are five conserved transmembrane domains in OsVIT2 by further analyses.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
*Zhejiang Province Key Laboratory of Technology for Improving Agricultural Product Quality, School of Agricultural and Food Science, Zhejiang Agriculture and Forest University, China

==References==
<references>
<ref name="ref1">Yu Zhang, Yong-Han Xu, Hong-Yin Yi, and Ji-Ming Gong. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. The Plant Journal (2012)72, 400–410.</ref>
<ref name="ref2">Hiroshi Masuda, May Sann Aung, and Naoko K Nishizawa. Iron biofortification of rice using different transgenic approaches. Rice 2013,6:40.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os03g0786400

2017-05-07T10:56:49Z

Xysj2027:

The rice '''''Os03g0786400''''' was reported as '''''DST''''' in 2013 by researchers from China <ref name="ref1" /> .

==Annotated Information==
[[File:16-Os03g0786400.png|right|thumb|527px|'''Figure S1.''' ''Phenotypic characterization of NIL DST REG1/reg1 plants<ref name="ref1" />.'']]

===Gene Symbol===
*'''''Os03g0786400''''' '''''<=>''''' '''''DST, OsDST'''''

===Function===
* The zinc finger transcription factor DROUGHT AND SALT TOLERANCE ('''''DST''''') directly regulates OsCKX2 expression in the reproductive meristem.
* '''''DST'''''-directed expression of '''''OsCKX2''''' regulates CK accumulation in the SAM and, therefore, controls the number of the reproductive organs.
* A semidominant allele of the '''''DST''''' gene, perturbs '''''DST'''''-directed regulation of '''''OsCKX2''''' expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number.
* '''''DST''''' is a unique regulator of reproductive meristem activity.
* '''''DST''''' may be explored to facilitate the genetic enhancement of grain production in rice and other small grain cereals<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> <ref name="ref4" /> <ref name="ref5" /> .

===Phenotypic analysis===
* '''''DST''''' reg1 Enhances Grain Production in both indica and jopanic Rice.
* All transgenic plants overexpressing a wild-type DST allele (DSTREG1) showed reduced plant stature with less panicle branches and decreased grain number.
* In contrast, the DST RNA interference (RNAi) transgenic plants showed increased panicle branches and enhanced grain number.
* Similarly, transgenic plants overexpressing the reg1 mutant allele of DST (DST reg1 ) had increased panicle branches and produced more grains.

===Expression===
* DST is located in the nucleus with transcriptional activation and it will express momentarily down under the condition of salt stress and osmotic stress, then recovered to pre-treatment levels.

==Labs working on this gene==
* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of
Sciences, Beijing 100101, China;
* State Key Laboratory of Hybrid Rice, China National Hybrid Rice Research and Development Center, Changsha 410125, China;
* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China; and d Key
Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072, China

==References==
<references>
<ref name="ref1">Shuyu Li;Bingran Zhao;Dingyang Yuan; Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression; Proceedings of the National Academy of Sciences, 2013, 110(8): 3167-3172</ref>
<ref name="ref2"> Xin-Yuan Huang;Dai-Yin Chao; A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control; GENES & DEVELOPMENT, 2009, 23(15): 1805-1817</ref>
<ref name="ref3"> Wolfe SA, Nekludova L, Pabo CO(2000) DNA recognition by Cys(2)His(2) zinc finger proteins. Annu Rev Biophys Biomol Struct 29:183–212.</ref>
<ref name="ref4"> Sakamoto H, Maruyama K, Sakuma Y, Meshi T, Iwabuchi M, Shinozaki K, Yamaguchi-Shinozaki K(2004) Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol 136:2734–2746.</ref>
<ref name="ref5"> Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H(2007) Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318:1302–1305.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os01g0274800

2017-05-07T10:56:23Z

Xysj2027:

The rice '''''Os01g0274800''''' was reported as '''''csa''''' in 2010 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''CSA,csa,OsCSA'''''
[[File:7-Os01g0274800.png|right|thumb|527px|'''Figure 1.''' ''Comparison of the Wild Type and the csa Mutant.<ref name="ref1" />.'']]

===Function===
* CSA is a key transcriptional regulator for sugar partitioning in rice during male reproductive development.
* This genen was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues.
* CSA Directly Regulates MST8 in Rice and MSTs have the ability to transport a variable range of monosaccharides across membrane barriers and have been shown to play an important role in assimilate supply for sink tissue development.
* CSA Regulates Carbon Accumulation in the Anthersand is Required for Anther Development and Pollen Maturation.The control of sugar partitioning by CSA greatly affects male reproductive tissue development in rice<ref name="ref1" />.

===Phenotypic analysis===
*Carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs. In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile. The csa mutant had reduced accumulation of 14 C-labeled sugars in anther sink tissue.
===Expression===
* The expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers.
* The CSA gene is preferentially expressed in the vascular tissue and the tapetum of the anther, as well as in other sinks<ref name="ref2" />.
* The CSA transcripts were undetectable in stem and leaf, but detectable in root. In the sterile empty glume, which surrounds the rice flower, no CSA expression signal was observed.
* Strong expression of CSA was detected in the lemma and palea and weaker expression in the pistil and seed.CSA is likely expressed in the anther wall layers at
the early stages.<ref name="ref1" />

===Evolution===
* we know CSA was located between two InDel markers Z134 and Z138, which define a region of 23 kb.

==Labs working on this gene==
# School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
# Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education, Shanghai Jiao Tong University, Shanghai 200240, China
# Department of Horticulture, Michigan State University, East Lansing, Michigan 48824
# State Key Laboratory of Genetic Engineering, Institute of Plant Biology, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai 200433, China
# Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16082
==References==
<references>
<ref name="ref1">The Plant Cell, Vol. 22: 672–689, March 2010, www.plantcell.org ã 2010 American Society of Plant Biologists.Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.</ref>
<ref name="ref2">Ohdan, T., Francisco, P.B., Jr., Sawada, T., Hirose, T., Terao, T., Satoh, H., and Nakamura, Y. (2005). Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J. Exp. Bot. 56: 3229–3244.</ref>
</references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

Os01g0274800

2017-05-07T10:55:29Z

Xysj2027:

The rice '''''Os01g0274800''''' was reported as '''''csa''''' in 2010 by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''CSA,csa,OsCSA'''''
[[File:7-Os01g0274800.png|right|thumb|527px|'''Figure S1.''' ''Phenotypic characterization of NIL DST REG1/reg1 plants<ref name="ref1" />.'']]

===Function===
* CSA is a key transcriptional regulator for sugar partitioning in rice during male reproductive development.
* This genen was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues.
* CSA Directly Regulates MST8 in Rice and MSTs have the ability to transport a variable range of monosaccharides across membrane barriers and have been shown to play an important role in assimilate supply for sink tissue development.
* CSA Regulates Carbon Accumulation in the Anthersand is Required for Anther Development and Pollen Maturation.The control of sugar partitioning by CSA greatly affects male reproductive tissue development in rice<ref name="ref1" />.

===Phenotypic analysis===
*Carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs. In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile. The csa mutant had reduced accumulation of 14 C-labeled sugars in anther sink tissue.
===Expression===
* The expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers.
* The CSA gene is preferentially expressed in the vascular tissue and the tapetum of the anther, as well as in other sinks<ref name="ref2" />.
* The CSA transcripts were undetectable in stem and leaf, but detectable in root. In the sterile empty glume, which surrounds the rice flower, no CSA expression signal was observed.
* Strong expression of CSA was detected in the lemma and palea and weaker expression in the pistil and seed.CSA is likely expressed in the anther wall layers at the early stages.<ref name="ref1" />

===Evolution===
* we know CSA was located between two InDel markers Z134 and Z138, which define a region of 23 kb.

==Labs working on this gene==
# School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
# Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education, Shanghai Jiao Tong University, Shanghai 200240, China
# Department of Horticulture, Michigan State University, East Lansing, Michigan 48824
# State Key Laboratory of Genetic Engineering, Institute of Plant Biology, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai 200433, China
# Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16082
==References==
<references>
<ref name="ref1">The Plant Cell, Vol. 22: 672–689, March 2010, www.plantcell.org ã 2010 American Society of Plant Biologists.Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.</ref>
<ref name="ref2">Ohdan, T., Francisco, P.B., Jr., Sawada, T., Hirose, T., Terao, T., Satoh, H., and Nakamura, Y. (2005). Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J. Exp. Bot. 56: 3229–3244.</ref>
</references>
==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

File:16-Os03g0786400.png

2017-05-07T10:54:42Z

Xysj2027:

Os11g0582500

2017-05-07T10:20:39Z

Xysj2027: /* Annotated Information */

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[[File:Os11g0582500.png|277px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
<references>
<ref name="ref1">
Zhang D, Liang W, Yin C, Zong J, Gu F, Zhang D. OsC6, encoding a lipid
transfer protein, is required for postmeiotic anther development in rice. Plant
Physiol. 2010 Sep;154(1):149-62. doi: 10.1104/pp.110.158865. Epub 2010 Jul 7.
PubMed PMID: 20610705; PubMed Central PMCID: PMC2938136.
</ref>

</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

== Structured Information ==

Os11g0582500

2017-05-07T10:20:28Z

Xysj2027: /* Annotated Information */

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[[File:Os11g0582500.png|227px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
<references>
<ref name="ref1">
Zhang D, Liang W, Yin C, Zong J, Gu F, Zhang D. OsC6, encoding a lipid
transfer protein, is required for postmeiotic anther development in rice. Plant
Physiol. 2010 Sep;154(1):149-62. doi: 10.1104/pp.110.158865. Epub 2010 Jul 7.
PubMed PMID: 20610705; PubMed Central PMCID: PMC2938136.
</ref>

</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

== Structured Information ==

Os11g0582500

2017-05-07T10:20:11Z

Xysj2027: /* References */

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[[File:Os11g0582500.png|327px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
<references>
<ref name="ref1">
Zhang D, Liang W, Yin C, Zong J, Gu F, Zhang D. OsC6, encoding a lipid
transfer protein, is required for postmeiotic anther development in rice. Plant
Physiol. 2010 Sep;154(1):149-62. doi: 10.1104/pp.110.158865. Epub 2010 Jul 7.
PubMed PMID: 20610705; PubMed Central PMCID: PMC2938136.
</ref>

</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

== Structured Information ==

Os11g0582500

2017-05-07T10:19:56Z

Xysj2027:

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[[File:Os11g0582500.png|327px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
<ref name="ref1">
Zhang D, Liang W, Yin C, Zong J, Gu F, Zhang D. OsC6, encoding a lipid
transfer protein, is required for postmeiotic anther development in rice. Plant
Physiol. 2010 Sep;154(1):149-62. doi: 10.1104/pp.110.158865. Epub 2010 Jul 7.
PubMed PMID: 20610705; PubMed Central PMCID: PMC2938136.
</ref>

</references>

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
== Structured Information ==

Os11g0582500

2017-05-07T10:18:46Z

Xysj2027:

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[[File:Os11g0582500.png|327px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
Dasheng Zhang;Wanqi Liang;Changsong Yin;Jie Zong;Fangwei Gu;Dabing Zhang
OsC6, Encoding a Lipid Transfer Protein, Is Required for Postmeiotic Anther Development In Rice
Plant Physiology, 2010, 154(1): 149-162

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
== Structured Information ==

Os11g0582500

2017-05-07T10:18:36Z

Xysj2027:

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
[File:Os11g0582500.png|327px|thumb|right]]
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
Dasheng Zhang;Wanqi Liang;Changsong Yin;Jie Zong;Fangwei Gu;Dabing Zhang
OsC6, Encoding a Lipid Transfer Protein, Is Required for Postmeiotic Anther Development In Rice
Plant Physiology, 2010, 154(1): 149-162

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
== Structured Information ==

File:Os11g0582500.png

2017-05-07T10:18:30Z

Xysj2027:

Os11g0582500

2017-05-07T10:16:46Z

Xysj2027:

The rice gene Os11g0582500 was reported as '''''OsC6''''' in 2010<ref name="ref1"/> by researchers from China.

==Annotated Information==
===Gene Symbol===
*'''''Os11g0582500''''' '''''<=>''''' '''''C6, OsC6, OsG6B, OsLTPG25'''''

===Function===
* '''''OsC6''''' Encoding a Lipid Transfer Protein.
* '''''OsC6''''' is Required for Postmeiotic Anther Development, it functions in regulating postmeiotic anther development in rice.
* ''''OsC6''''' plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice.

===Phenotypic analysis===
* Plants in which OsC6 was silenced had defective development of orbicules (i.e. Ubisch bodies) and pollen exine and had reduced pollen fertility.

===Expression===
* '''''OsC6''''' expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development.
* Immunological assays indicated that '''''OsC6''''' is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle.
* Biochemical assays indicated that recombinant '''''OsC6''''' has lipid binding activity.

===Evolution===
* '''''OsC6''''' belongs to a distinct clade from previously identified LTP1 and LTP2 family members found in both dicots and monocots.

==Labs working on this gene==
* School of Life Science and Biotechnology (Das.Z., W.L., C.Y., J.Z., F.G., Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China
* Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education (Dab.Z.), Shanghai Jiao Tong University, Shanghai 200240, China

==References==
Dasheng Zhang;Wanqi Liang;Changsong Yin;Jie Zong;Fangwei Gu;Dabing Zhang
OsC6, Encoding a Lipid Transfer Protein, Is Required for Postmeiotic Anther Development In Rice
Plant Physiology, 2010, 154(1): 149-162

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
== Structured Information ==

Os05g0489900

2017-05-07T10:07:42Z

Xysj2027: /* Annotated Information */

The rice '''''Os05g0489900''''' was reported as '''''OsCCaMK''''' in 2014 <ref name="ref1" /> by researchers from Japan.

==Annotated Information==
[[File:30-Os05g0489900.png|right|thumb|327px|'''Figure 2.''' ''CH 4 flux and CH 4 concentration in soil water in WT and NE1115 plants under LN and SN paddy fields.<ref name="ref1" />.'']]
===Gene Symbol===
*'''''Os05g0489900''''' '''<=>''' '''''OsCCaMK,CCaMK,OsCCaMK1, OsDMI3'''''

===Function===
* '''''OsCCaMK''''' is required for fungal 29 accommodation in rice roots
* CH4 oxidation and N2 fixation were simultaneously activated in the root zone of WT rice in the LN field, and both processes are likely controlled by '''''OsCCaMK'''''.

===Phenotypic analysis===
* The researhcers report the effect of a Tos17-induced '''''OsCCaMK''''' mutant (NE1115) on CH 4 flux in low-nitrogen (LN) and standard-nitrogen (SN) paddy fields as compared with wild-type (WT) Nipponbare. Growth of NE1115 was significantly decreased compared with that of WT, especially in the LN field. The CH 4 flux of NE1115 in the LN field was significantly higher (156–407% in 2011 and 170–816% in 2012) than that of WT, although no difference was observed in the SN field.
* The copy number of pmoA (encoding methane monooxygenase in methanotrophs) was significantly higher in the roots and rhizosphere soil of WT than those of NE1115.
* However, mcrA (encoding methyl coenzyme M reductase in methanogens) copy number did not differ between WT and NE1115.

You can also add sub-section(s) at will.

==Labs working on this gene==
* Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
* National Institute for Agro-Environmental Sciences, Tsukuba 305-8604, Japan
* Graduate School of Agricultural Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan
* Memuro Research Station, National Agricultural Research Center for Hokkaido Region, Shinsei, Memuro-cho, Kasaigun, Hokkaido 082-0081, Japan
* Department of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan

==References==
<references>
* <ref name="ref1">
Bao Z, Watanabe A, Sasaki K, Okubo T, Tokida T, Liu D, Ikeda S,
Imaizumi-Anraku H, Asakawa S, Sato T, Mitsui H, Minamisawa K. A rice gene for
microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with
low nitrogen input. Appl Environ Microbiol. 2014 Mar;80(6):1995-2003. doi:
10.1128/AEM.03646-13. Epub 2014 Jan 17. PubMed PMID: 24441161;
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

RiceWiki:Curated Genes

2017-05-07T10:07:14Z

Xysj2027:

{|class="wikitable sortable" style="width:90%;text-align:center"
|-
!'''Gene Symbol'''
!'''RAP-DB-ID'''
!'''Total Contribution Score'''
!'''Summed Edit Quantity'''
!'''Averaged Edit Quality'''
!'''Contributor Count'''
!'''Edit Count*'''
!'''Last Edit Time'''
|-
|[[Os09g0114500|'''''BC12''''']]
|[[Os09g0114500]]
| 14.854
| 23746
| 0.626
| 3
| 3
| 2015/6/12 17:37
|-
|[[Os10g0405500|'''''PAIR3''''']]
|[[Os10g0405500]]
| 10.742
| 10877
| 0.988
| 3
| 3
| 2014/6/8 23:39
|-
|[[Os09g0286400|'''''OsNHX5''''']]
|[[Os09g0286400]]
| 12.133
| 24113
| 0.503
| 2
| 2
| 2015/6/12 17:39
|-
|[[Os09g0306400|'''''OsbZIP71''''']]
|[[Os09g0306400]]
| 7.71
| 12551
| 0.614
| 2
| 2
| 2015/6/12 17:39
|-
|[[Os09g0417600|'''''OsWRKY76''''']]
|[[Os09g0417600]]
| 5.713
| 10209
| 0.56
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os09g0434200|'''''OsDSG1''''']]
|[[Os09g0434200]]
| 5.792
| 11879
| 0.488
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os10g0553300|'''''OsTPP2''''']]
|[[Os10g0553300]]
| 8.403
| 35721
| 0.235
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os10g0563600|'''''OsMSRA4.1''''']]
|[[Os10g0563600]]
| 7.778
| 13380
| 0.581
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os11g0127600|'''''ONAC045''''']]
|[[Os11g0127600]]
| 7.065
| 12576
| 0.562
| 3
| 3
| 2015/6/13 17:01
|-
|[[Os11g0648000|'''''OsNHX3''''']]
|[[Os11g0648000]]
| 7.638
| 15767
| 0.484
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os12g0569700|'''''OsHsp23.7''''']]
|[[Os12g0569700]]
| 6.412
| 13859
| 0.463
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os12g0583700|'''''ZFP252''''']]
|[[Os12g0583700]]
| 8.489
| 12862
| 0.66
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os08g0139000|'''''OsDEG10''''']]
|[[Os08g0139000]]
| 4.811
| 9008
| 0.534
| 2
| 2
| 2015/6/12 17:25
|-
|[[Os08g0323700|'''''OsCCC1''''']]
|[[Os08g0323700]]
| 6.709
| 11315
| 0.593
| 2
| 2
| 2015/6/12 17:29
|-
|[[Os08g0441100|'''''OsCIPK06''''']]
|[[Os08g0441100]]
| 3.819
| 7418
| 0.515
| 2
| 2
| 2015/6/12 17:31
|-
|[[Os08g0504700|'''''OsSAP11''''']]
|[[Os08g0504700]]
| 7.149
| 10763
| 0.664
| 2
| 2
| 2015/6/12 17:32
|-
|[[Os08g0540400|'''''OsCPK21''''']]
|[[Os08g0540400]]
| 10.561
| 19732
| 0.535
| 2
| 2
| 2015/6/12 17:34
|-
|[[Os08g0546800|'''''OsHsfB2b''''']]
|[[Os08g0546800]]
| 12.399
| 23039
| 0.538
| 2
| 2
| 2015/6/12 17:34
|-
|[[Os07g0186000|'''''OsTRXh1''''']]
|[[Os07g0186000]]
| 7.817
| 12275
| 0.637
| 2
| 2
| 2015/6/12 16:34
|-
|[[Os07g0556800|'''''OSRIP18''''']]
|[[Os07g0556800]]
| 8.473
| 12924
| 0.656
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os07g0666900|'''''OsNHX1''''']]
|[[Os07g0666900]]
| 11.455
| 21522
| 0.532
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0678600|'''''OsCIPK2''''']]
|[[Os07g0678600]]
| 5.575
| 11240
| 0.496
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0693800|'''''OsFAD8''''']]
|[[Os07g0693800]]
| 5.613
| 11290
| 0.497
| 2
| 2
| 2015/6/12 16:50
|-
|[[Os06g0130100|'''''OsSIK1''''']]
|[[Os06g0130100]]
| 11.48
| 22964
| 0.5
| 2
| 2
| 2015/6/12 16:04
|-
|[[Os06g0472000|'''''OsMSRB1.1''''']]
|[[Os06g0472000]]
| 6.592
| 12098
| 0.545
| 2
| 2
| 2015/6/12 16:14
|-
|[[Os06g0561000|'''''OsMIOX''''']]
|[[Os06g0561000]]
| 6.249
| 12468
| 0.501
| 2
| 2
| 2015/6/12 16:15
|-
|[[Os06g0603600|'''''OsSPX1''''']]
|[[Os06g0603600]]
| 7.774
| 15383
| 0.505
| 2
| 2
| 2015/6/12 16:18
|-
|[[Os06g0612800|'''''OsiSAP8''''']]
|[[Os06g0612800]]
| 8.934
| 14002
| 0.638
| 2
| 2
| 2015/6/12 16:19
|-
|[[Os06g0644200|'''''OVP1''''']]
|[[Os06g0644200]]
| 10.007
| 15443
| 0.648
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os06g0651100|'''''YK1''''']]
|[[Os06g0651100]]
| 8.803
| 18547
| 0.475
| 2
| 2
| 2015/6/12 16:21
|-
|[[Os06g0662200|'''''OsbZIP52''''']]
|[[Os06g0662200]]
| 6.942
| 12388
| 0.56
| 2
| 2
| 2015/6/12 16:22
|-
|[[Os06g0727200|'''''OsCATB''''']]
|[[Os06g0727200]]
| 6.864
| 13184
| 0.521
| 2
| 2
| 2015/6/12 16:27
|-
|[[Os03g0117900|'''''HYR''''']]
|[[Os03g0117900]]
| 5.381
| 8815
| 0.61
| 2
| 2
| 2015/6/12 12:59
|-
|[[Os09g0457900|'''''OsEATB''''']]
|[[Os09g0457900]]
| 42.219
| 42219
| 1
| 1
| 1
| 2014/6/6 14:12
|-
|[[Os06g0208800|'''''LYP6''''']]
|[[Os06g0208800]]
| 35.205
| 40853
| 0.862
| 2
| 2
| 2015/6/12 16:09
|-
|'''''[[GW5]]'''''
|
| 31.812
| 31817
| 1
| 2
| 2
| 2014/6/8 22:47
|-
|[[Os03g0122600|'''''OsMADS50''''']]
|[[Os03g0122600]]
| 31.778
| 36672
| 0.867
| 2
| 2
| 2015/6/12 13:00
|-
|'''''[[Du1]]'''''
|
| 26.789
| 26797
| 1
| 2
| 2
| 2014/6/5 11:51
|-
|[[Os01g0771200|'''''XB24''''']]
|[[Os01g0771200]]
| 25.112
| 106499
| 0.236
| 3
| 14
| 2015/5/13 15:32
|-
|'''''[[IPA1]]'''''
|
| 22.636
| 22636
| 1
| 1
| 1
| 2014/6/1 14:57
|-
|'''''[[AB013448]]'''''
|
| 21.65
| 21650
| 1
| 1
| 1
| 2014/6/8 17:24
|-
|[[Os10g0542100|'''''MT''''']]
|[[Os10g0542100]]
| 21.515
| 25382
| 0.848
| 3
| 3
| 2015/6/13 16:56
|-
|'''''[[MADS]]'''''
|
| 21.305
| 21310
| 1
| 3
| 3
| 2014/6/7 19:11
|-
|'''''[[MYB]]'''''
|
| 21.082
| 21418
| 0.984
| 2
| 2
| 2013/7/16 10:48
|-
|[[Os09g0272900|'''''PB''''']]
|[[Os09g0272900]]
| 21.033
| 24405
| 0.862
| 2
| 2
| 2015/6/12 17:38
|-
|[[Os01g0848400|'''''qSH1''''']]
|[[Os01g0848400]]
| 20.688
| 31733
| 0.652
| 2
| 2
| 2015/5/13 15:40
|-
|[[Os09g0441900|'''''OsDEP1''''']]
|[[Os09g0441900]]
| 18.815
| 18855
| 0.998
| 5
| 5
| 2014/6/11 0:23
|-
|[[Os09g0240200|'''''CONSTANS''''']]
|[[Os09g0240200]]
| 18.077
| 26433
| 0.684
| 2
| 2
| 2015/6/12 17:37
|-
|[[Os04g0271200|'''''SRT701''''']]
|[[Os04g0271200]]
| 18.041
| 18413
| 0.98
| 5
| 9
| 2014/6/10 16:01
|-
|[[Os01g0678500|'''''OsTPC1''''']]
|[[Os01g0678500]]
| 17.989
| 29118
| 0.618
| 6
| 7
| 2015/5/13 15:24
|-
|[[Os03g0332400|'''''OsGLYII-2''''']]
|[[Os03g0332400]]
| 17.603
| 17603
| 1
| 1
| 1
| 2014/12/27 21:46
|-
|[[Os06g0196700|'''''OsARF16'''''']]
|[[Os06g0196700]]
| 17.411
| 28849
| 0.604
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os07g0261200|'''''Ghd7''''']]
|[[Os07g0261200]]
| 17.077
| 17414
| 0.981
| 2
| 2
| 2014/6/1 17:56
|-
|'''''[[Xa7]]'''''
|
| 16.58
| 16580
| 1
| 1
| 1
| 2014/5/30 14:34
|-
|[[Os03g0227700|'''''OsDWARF4''''']]
|[[Os03g0227700]]
| 16.238
| 28577
| 0.568
| 4
| 6
| 2015/6/12 13:36
|-
|'''''[[Pb1]]'''''
|
| 15.987
| 15987
| 1
| 1
| 1
| 2014/6/3 15:06
|-
|[[Os12g0597000|'''''CBL''''']]
|[[Os12g0597000]]
| 15.897
| 25737
| 0.618
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os01g0841500|'''''OsMYB3R2''''']]
|[[Os01g0841500]]
| 15.635
| 27885
| 0.561
| 3
| 4
| 2015/5/13 15:39
|-
|[[Os01g0182600|'''''GI''''']]
|[[Os01g0182600]]
| 14.75
| 22705
| 0.65
| 2
| 2
| 2015/5/13 14:58
|-
|[[Os08g0162100|'''''ASP1''''']]
|[[Os08g0162100]]
| 14.743
| 14743
| 1
| 1
| 1
| 2015/6/12 17:26
|-
|[[Os02g0738900|'''''OsDRP2B''''']]
|[[Os02g0738900]]
| 14.365
| 21439
| 0.67
| 2
| 2
| 2015/5/14 13:58
|-
|[[Os01g57340|'''''Npi37''''']]
|[[Os01g57340]]
| 14.08
| 14080
| 1
| 1
| 1
| 2014/5/27 20:22
|-
|[[Os01g0718300|'''''OsBRI1''''']]
|[[Os01g0718300]]
| 14.008
| 25923
| 0.54
| 3
| 3
| 2015/5/13 15:26
|-
|'''''[[Du2]]'''''
|
| 13.964
| 13964
| 1
| 2
| 2
| 2014/6/5 11:53
|-
|'''''[[OsMYB103L]]'''''
|
| 13.96
| 13960
| 1
| 1
| 1
| 2014/6/11 16:14
|-
|[[Os01g0782100|''''' Pi-sh''''']]
|[[Os01g0782100]]
| 13.897
| 27151
| 0.512
| 3
| 3
| 2015/5/13 15:34

|-
|[[Os06g0706400|'''''OsPTR9''''']]
|[[Os06g0706400]]
| 13.739
| 20020
| 0.686
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os08g0398400|'''''OsHIR1''''']]
|[[Os08g0398400]]
| 13.721
| 13748
| 0.998
| 3
| 6
| 2014/6/3 16:40
|-
|[[Os02g0141300|'''''CAP1''''']]
|[[Os02g0141300]]
| 13.71
| 28137
| 0.487
| 5
| 10
| 2015/5/14 13:21
|-
|[[Os07g0214100|'''''RAG1''''']]
|[[Os07g0214100]]
| 13.62
| 31302
| 0.435
| 2
| 2
| 2015/6/12 16:36
|-
|'''''[[DWT1]]'''''
|
| 13.275
| 13275
| 1
| 1
| 1
| 2014/5/31 12:55
|-
|[[Os01g0797600|'''''OsERF3''''']]
|[[Os01g0797600]]
| 13.247
| 13247
| 1
| 1
| 1
| 2014/5/25 15:17
|-
|[[Os01g0883800|'''''semidwarf-1''''']]
|[[Os01g0883800]]
| 13.17
| 24896
| 0.529
| 16
| 41
| 2016/6/17 17:22
|-
|[[Os08g0524100|'''''OsSRT1''''']]
|[[Os08g0524100]]
| 13.001
| 18711
| 0.695
| 2
| 2
| 2015/6/12 17:33
|-
|[[Os08g0559300|'''''SPINDLY''''']]
|[[Os08g0559300]]
| 12.718
| 21018
| 0.605
| 3
| 6
| 2015/6/12 17:35
|-
|[[Os11g0225300|'''''PAMP''''']]
|[[Os11g0225300]]
| 12.691
| 23520
| 0.54
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os07g0155600|'''''OsEIN2''''']]
|[[Os07g0155600]]
| 12.605
| 18316
| 0.688
| 2
| 2
| 2015/6/12 16:33
|-
|[[Os01g0607200|'''''OsBAT1''''']]
|[[Os01g0607200]]
| 12.553
| 19986
| 0.628
| 2
| 2
| 2015/5/13 15:17
|-
|[[Os07g0616800|'''''SUS''''']]
|[[Os07g0616800]]
| 12.42
| 26693
| 0.465
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os12g0102400|'''''OsRINGC2-2''''']]
|[[Os12g0102400]]
| 12.278
| 17739
| 0.692
| 3
| 3
| 2015/6/13 17:13
|-
|'''''[[WRKY]]'''''
|
| 12.226
| 12233
| 0.999
| 2
| 2
| 2014/5/31 12:44
|-
|[[Os10g0536100|'''''OsMADS50''''']]
|[[Os10g0536100]]
| 11.96
| 19080
| 0.627
| 3
| 3
| 2015/6/13 16:52
|-
|[[Os02g0725900|'''''HAP3''''']]
|[[Os02g0725900]]
| 11.931
| 16469
| 0.724
| 2
| 2
| 2015/5/14 13:55
|-
|[[Os01g0626400|'''''OsWRKY11''''']]
|[[Os01g0626400]]
| 11.902
| 18881
| 0.63
| 2
| 2
| 2015/5/13 15:20
|-
|[[Os01g0726400|'''''CFO1''''']]
|[[Os01g0726400]]
| 11.891
| 17625
| 0.675
| 2
| 2
| 2015/5/13 15:27
|-
|[[Os09g0422500|'''''OsCESA9''''']]
|[[Os09g0422500]]
| 11.747
| 23511
| 0.5
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os09g0250700|'''''OsABC1-12''''']]
|[[Os09g0250700]]
| 11.742
| 15681
| 0.749
| 2
| 2
| 2015/6/12 17:38
|-
|[[Os06g0701300|'''''OsABC1-8''''']]
|[[Os06g0701300]]
| 11.604
| 15691
| 0.74
| 2
| 2
| 2015/6/12 16:24
|-
|[[Os02g0126400|'''''OsCPK4''''']]
|[[Os02g0126400]]
| 11.6
| 22962
| 0.505
| 2
| 2
| 2015/5/14 13:20
|-
|[[Os06g0570100|'''''d35 Tan-Ginbozu''''']]
|[[Os06g0570100]]
| 11.586
| 15710
| 0.737
| 3
| 3
| 2015/6/12 16:16
|-
|[[Os03g0793500|'''''Hd16''''']]
|[[Os03g0793500]]
| 11.531
| 15843
| 0.728
| 2
| 2
| 2015/5/15 13:43
|-
|[[Os01g0536000|'''''OsCIPK08''''']]
|[[Os01g0536000]]
| 11.52
| 15150
| 0.76
| 2
| 2
| 2015/5/13 15:15
|-
|[[Os03g0848700|'''''Bph14''''']]
|[[Os03g0848700]]
| 11.486
| 21573
| 0.532
| 4
| 4
| 2015/5/15 13:41
|-
|[[Os01g0907900|'''''PLA2''''']]
|[[Os01g0907900]]
| 11.483
| 11485
| 1
| 2
| 2
| 2014/6/2 17:56
|-
|[[Os07g0459200|'''''OsABC1-10''''']]
|[[Os07g0459200]]
| 11.449
| 15381
| 0.744
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os07g0102300|'''''SRL1''''']]
|[[Os07g0102300]]
| 11.423
| 22326
| 0.512
| 3
| 3
| 2015/6/12 16:30
|-
|[[Os07g0186200|'''''OsSIK2''''']]
|[[Os07g0186200]]
| 11.413
| 20165
| 0.566
| 3
| 3
| 2015/6/12 16:34
|-
|[[Os03g0226800|'''''CMT3''''']]
|[[Os03g0226800]]
| 11.245
| 21415
| 0.525
| 3
| 3
| 2015/6/12 13:36
|-
|[[Os08g0114200|'''''OsGLU3''''']]
|[[Os08g0114200]]
| 11.137
| 17754
| 0.627
| 2
| 2
| 2015/6/12 17:23
|-
|[[Os07g0596300|'''''FH5''''']]
|[[Os07g0596300]]
| 11.085
| 15490
| 0.716
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os02g0178800|'''''OsGL1-2''''']]
|[[Os02g0178800]]
| 11.079
| 14720
| 0.753
| 2
| 2
| 2015/5/14 13:23
|-
|[[Os03g0811100|''''' Chl1''''']]
|[[Os03g0811100]]
| 11.068
| 14957
| 0.74
| 2
| 2
| 2015/5/15 13:42
|-
|[[Os09g0395300|'''''SLL1''''']]
|[[Os09g0395300]]
| 11.063
| 16461
| 0.672
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os03g03150|'''''TAD1''''']]
|[[Os03g03150]]
| 10.972
| 10972
| 1
| 1
| 1
| 2014/6/9 12:35
|-
|[[Os12g0189500|'''''OsYUC11''''']]
|[[Os12g0189500]]
| 10.931
| 20645
| 0.529
| 7
| 7
| 2015/6/13 17:16
|-
|[[Os06g0211200|'''''OsAREB1''''']]
|[[Os06g0211200]]
| 10.925
| 19995
| 0.546
| 5
| 6
| 2015/6/12 16:09
|-
|[[Os02g0100200|'''''HSP''''']]
|[[Os02g0100200]]
| 10.917
| 21797
| 0.501
| 2
| 2
| 2015/5/14 13:17
|-
|'''''[[BHLH]]'''''
|
| 10.829
| 10829
| 1
| 1
| 1
| 2013/7/21 20:47
|-
|[[Os11g0703900|'''''Hsp70''''']]
|[[Os11g0703900]]
| 10.813
| 10898
| 0.992
| 4
| 5
| 2014/6/9 23:54
|-
|[[Os01g44260|'''''OsDfr''''']]
|[[Os01g44260]]
| 10.787
| 10787
| 1
| 1
| 1
| 2014/6/9 21:48
|-
|[[Os03g0815100|'''''SNAC1''''']]
|[[Os03g0815100]]
| 10.722
| 15783
| 0.679
| 2
| 2
| 2015/5/15 13:42
|-
|[[Os10g0561400|'''''OsMYBS3''''']]
|[[Os10g0561400]]
| 10.656
| 22236
| 0.479
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os11g0523800|'''''OsARF1''''']]
|[[Os11g0523800]]
| 10.633
| 21943
| 0.485
| 6
| 6
| 2015/6/13 17:08
|-
|[[Os07g0257200|'''''OsNRAMP5''''']]
|[[Os07g0257200]]
| 10.556
| 10556
| 1
| 1
| 1
| 2015/6/12 16:38
|-
|[[Os02g0661100|'''''OsTPP1''''']]
|[[Os02g0661100]]
| 10.544
| 18837
| 0.56
| 2
| 2
| 2015/5/14 13:51
|-
|[[Os07g0164000|'''''WAF1''''']]
|[[Os07g0164000]]
| 10.534
| 11864
| 0.888
| 2
| 2
| 2015/6/12 16:33
|-
|[[Os12g0476200|'''''Xa25''''']]
|[[Os12g0476200]]
| 10.44
| 17073
| 0.611
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os10g0497300|'''''Rf1a''''']]
|[[Os10g0497300]]
| 10.431
| 18232
| 0.572
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os07g0108900|'''''OsMADS15''''']]
|[[Os07g0108900]]
| 10.425
| 20545
| 0.507
| 4
| 5
| 2015/6/12 16:31
|-
|[[Os03g0215400|'''''MADS1''''']]
|[[Os03g0215400]]
| 10.412
| 14715
| 0.708
| 2
| 2
| 2015/6/12 13:34
|-
|[[Os08g0174700|'''''OsSERK1''''']]
|[[Os08g0174700]]
| 10.335
| 21519
| 0.48
| 2
| 2
| 2015/6/12 17:28
|-
|[[Os01g0121700|'''''OsWBC1''''']]
|[[Os01g0121700]]
| 10.278
| 14300
| 0.719
| 2
| 2
| 2015/5/13 14:49
|-
|[[Os01g0201700|'''''OsMADS3''''']]
|[[Os01g0201700]]
| 10.276
| 20440
| 0.503
| 2
| 2
| 2015/5/13 15:03
|-
|[[Os10g0577600|'''''JMJ706''''']]
|[[Os10g0577600]]
| 10.16
| 18081
| 0.562
| 3
| 3
| 2015/6/13 16:59
|-
|[[Os01g0839100|'''''ZFP179''''']]
|[[Os01g0839100]]
| 10.128
| 13298
| 0.762
| 2
| 2
| 2015/5/13 15:38
|-
|[[Os03g0237250|'''''LPA1''''']]
|[[Os03g0237250]]
| 10.125
| 14184
| 0.714
| 2
| 2
| 2015/6/12 13:38
|-
|[[Os06g0133000|'''''Waxy''''']]
|[[Os06g0133000]]
| 10.084
| 22204
| 0.454
| 3
| 3
| 2015/6/12 16:04
|-
|[[Os03g0805100|'''''SQS''']]
|[[Os03g0805100]]
| 10.051
| 13542
| 0.742
| 2
| 2
| 2015/5/15 13:42
|-
|'''''[[AB013449]]'''''
|
| 10.03
| 10030
| 1
| 1
| 1
| 2014/6/10 22:14
|-
|[[Os07g0605200|'''''OsMADS18''''']]
|[[Os07g0605200]]
| 10.027
| 19041
| 0.527
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os06g0194900|'''''Sus''''']]
|[[Os06g0194900]]
| 10.026
| 20580
| 0.487
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os01g0764800|'''''GH3''''']]
|[[Os01g0764800]]
| 10.024
| 18674
| 0.537
| 2
| 2
| 2015/5/13 15:32
|-
|[[Os03g0111300|'''''NsLTPs''''']]
|[[Os03g0111300]]
| 10.013
| 12909
| 0.776
| 4
| 4
| 2015/6/12 12:57
|-
|[[Os10g0127900|'''''OsFbx352''''']]
|[[Os10g0127900]]
| 10.013
| 20618
| 0.486
| 4
| 8
| 2015/6/13 16:43
|-
|[[Os06g0662000|'''''OsVHA-A''''']]
|[[Os06g0662000]]
| 9.949
| 19796
| 0.503
| 2
| 2
| 2015/6/12 16:21
|-
|[[Os06g0254600|'''''CALEOSIN''''']]
|[[Os06g0254600]]
| 9.94
| 12129
| 0.82
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os06g0603000|'''''SE5''''']]
|[[Os06g0603000]]
| 9.889
| 9889
| 1
| 1
| 1
| 2014/6/9 17:03
|-
|[[Os08g0535200|'''''xa13''''']]
|[[Os08g0535200]]
| 9.858
| 18774
| 0.525
| 3
| 3
| 2015/6/12 17:34
|-
|[[Os12g0281300|'''''Pi-ta''''']]
|[[Os12g0281300]]
| 9.857
| 21855
| 0.451
| 4
| 4
| 2015/6/13 17:16
|-
|[[Os01g0919400|'''''SPS''''']]
|[[Os01g0919400]]
| 9.837
| 9837
| 1
| 1
| 1
| 2016/6/6 17:48
|-
|[[Os10g0573900|'''''OsNMD3''''']]
|[[Os10g0573900]]
| 9.818
| 16399
| 0.599
| 3
| 3
| 2015/6/13 16:59
|-
|[[Os01g0197100|'''''dwarf2''''']]
|[[Os01g0197100]]
| 9.81
| 19279
| 0.509
| 5
| 6
| 2015/5/13 14:59
|-
|[[Os11g0216300|'''''OsABC1-13''''']]
|[[Os11g0216300]]
| 9.795
| 13761
| 0.712
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os01g0102900|'''''Os-LIR1''''']]
|[[Os01g0102900]]
| 9.726
| 9726
| 1
| 1
| 1
| 2016/6/12 14:04
|-
|[[Os11g0249000|'''''NLS1''''']]
|[[Os11g0249000]]
| 9.718
| 17393
| 0.559
| 3
| 3
| 2015/6/13 17:05
|-
|[[Os10g0467800|'''''OsCesA7''''']]
|[[Os10g0467800]]
| 9.68
| 22133
| 0.437
| 5
| 6
| 2015/6/13 16:48
|-
|[[Os02g0682200|'''''MADS6''''']]
|[[Os02g0682200]]
| 9.577
| 17192
| 0.557
| 3
| 13
| 2015/5/14 13:53
|-
|[[Os06g0569500|'''''GAs''''']]
|[[Os06g0569500]]
| 9.526
| 18834
| 0.506
| 2
| 2
| 2015/6/12 16:15
|-
|[[Os09g0456800|'''''OsHsfs''''']]
|[[Os09g0456800]]
| 9.468
| 13735
| 0.689
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os02g0274900|'''''OsGMST1''''']]
|[[Os02g0274900]]
| 9.449
| 18241
| 0.518
| 2
| 2
| 2015/5/14 13:38
|-
|[[Os06g0724900|'''''ILA1''''']]
|[[Os06g0724900]]
| 9.361
| 19950
| 0.469
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os01g0611100|'''''OsRAN1''''']]
|[[Os01g0611100]]
| 9.349
| 15330
| 0.61
| 2
| 2
| 2015/5/13 15:18
|-
|[[Os08g0509600|'''''OsSPL14''''']]
|[[Os08g0509600]]
| 9.346
| 17625
| 0.53
| 3
| 4
| 2015/6/12 17:32
|-
|[[Os07g0558000|'''''OsABC1-11''''']]
|[[Os07g0558000]]
| 9.337
| 13289
| 0.703
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os09g0449000|'''''PTC1''''']]
|[[Os09g0449000]]
| 9.33
| 16966
| 0.55
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os04g0415000|'''''BY240''''']]
|[[Os04g0415000]]
| 9.31
| 9310
| 1
| 1
| 1
| 2014/6/6 19:55
|-
|[[Os07g0471000|'''''OsIRE1''''']]
|[[Os07g0471000]]
| 9.278
| 18586
| 0.499
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os03g0170900|'''''OsSUT1''''']]
|[[Os03g0170900]]
| 9.272
| 19337
| 0.479
| 2
| 2
| 2015/6/12 13:04
|-
|[[Os06g0610300|'''''MOC1''''']]
|[[Os06g0610300]]
| 9.171
| 11979
| 0.766
| 2
| 2
| 2015/6/12 16:19
|-
|[[Os06g0583400|'''''OsHDAC702''''']]
|[[Os06g0583400]]
| 9.15
| 11481
| 0.797
| 2
| 2
| 2015/6/12 16:16
|-
|[[Os02g0622100|'''''LTG1''''']]
|[[Os02g0622100]]
| 9.147
| 12303
| 0.743
| 2
| 2
| 2015/5/14 13:47
|-
|[[Os03g0203200|'''''HTD2''''']]
|[[Os03g0203200]]
| 9.128
| 17233
| 0.53
| 4
| 4
| 2015/6/12 13:06
|-
|[[Os06g0660200|'''''OsPIN2''''']]
|[[Os06g0660200]]
| 9.119
| 20530
| 0.444
| 5
| 6
| 2015/6/12 16:21
|-
|[[Os10g0403000|'''''PLA1 ''''']]
|[[Os10g0403000]]
| 9.104
| 15463
| 0.589
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os03g0112700|'''''Ehd4''''']]
|[[Os03g0112700]]
| 9.094
| 17122
| 0.531
| 3
| 3
| 2015/6/12 12:58
|-
|[[Os02g0799100|'''''Ossgo1''''']]
|[[Os02g0799100]]
| 9.068
| 16095
| 0.563
| 3
| 6
| 2015/5/14 14:02
|-
|[[Os09g0307800|'''''SDG724''''']]
|[[Os09g0307800]]
| 9.029
| 11279
| 0.801
| 4
| 15
| 2014/6/6 8:56
|-
|[[Os08g0424500|'''''Badh2''''']]
|[[Os08g0424500]]
| 9.021
| 17768
| 0.508
| 3
| 3
| 2015/6/12 17:30
|-
|[[Os11g0184900|'''''OsNAC5''''']]
|[[Os11g0184900]]
| 9.016
| 15182
| 0.594
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os02g0203700|'''''SRZ1''''']]
|[[Os02g0203700]]
| 9.003
| 12324
| 0.731
| 2
| 2
| 2015/5/14 13:26
|-
|[[Os06g0125000|'''''RPM1''''']]
|[[Os06g0125000]]
| 8.97
| 12695
| 0.707
| 2
| 2
| 2015/6/12 16:02
|-
|[[Os03g0128700|'''''OsCDPK13''''']]
|[[Os03g0128700]]
| 8.928
| 17882
| 0.499
| 2
| 2
| 2015/6/12 13:01
|-
|[[Os03g0215200|'''''DL''''']]
|[[Os03g0215200]]
| 8.927
| 14196
| 0.629
| 3
| 3
| 2015/6/12 13:07
|-
|[[Os01g0952800|'''''OsIRO2''''']]
|[[Os01g0952800]]
| 8.922
| 8922
| 1
| 1
| 1
| 2014/6/10 21:52
|-
|[[Os06g0494100|'''''Pi-d2''''']]
|[[Os06g0494100]]
| 8.906
| 12742
| 0.699
| 3
| 3
| 2015/6/12 16:14
|-
|[[Os03g0149100|'''''OsCrl1''''']]
|[[Os03g0149100]]
| 8.897
| 13456
| 0.661
| 3
| 4
| 2015/6/12 11:15
|-
|'''''[[BZIP]]'''''
|
| 8.894
| 8924
| 0.997
| 2
| 2
| 2013/7/21 21:01
|-
|[[Os06g0625900|'''''OsHAK10''''']]
|[[Os06g0625900]]
| 8.872
| 13033
| 0.681
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os06g0229800|'''''ALK''''']]
|[[Os06g0229800]]
| 8.835
| 16807
| 0.526
| 2
| 2
| 2015/6/12 16:11
|-
|[[Os07g0232900|'''''OsHMA3''''']]
|[[Os07g0232900]]
| 8.79
| 18004
| 0.488
| 3
| 8
| 2015/6/12 16:37
|-
|[[Os07g0129700|'''''OSH15''''']]
|[[Os07g0129700]]
| 8.789
| 18504
| 0.475
| 3
| 3
| 2015/6/12 16:32
|-
|[[Os12g0641400|'''''OsSUT2''''']]
|[[Os12g0641400]]
| 8.735
| 8735
| 1
| 1
| 1
| 2016/6/12 13:56
|-
|[[Os08g0137100|'''''OsFIE2''''']]
|[[Os08g0137100]]
| 8.717
| 8717
| 1
| 1
| 1
| 2015/6/12 17:25
|-
|'''''[[Htd1]]'''''
|
| 8.705
| 8705
| 1
| 1
| 1
| 2014/6/10 14:14
|-
|[[Os03g0707600|'''''GAI''''']]
|[[Os03g0707600]]
| 8.666
| 16659
| 0.52
| 2
| 5
| 2014/5/28 0:43
|-
|'''''[[Xa23]]'''''
|
| 8.641
| 8641
| 1
| 1
| 1
| 2014/5/31 21:49
|-
|[[Os11g0235200|'''''SP1''''']]
|[[Os11g0235200]]
| 8.563
| 17156
| 0.499
| 3
| 3
| 2015/6/13 17:05
|-
|[[Os07g0100600|'''''OsPTR1''''']]
|[[Os07g0100600]]
| 8.559
| 15027
| 0.57
| 2
| 2
| 2015/6/12 16:30
|-
|[[Os06g0597000|'''''OsIAA23''''']]
|[[Os06g0597000]]
| 8.509
| 16209
| 0.525
| 4
| 11
| 2014/5/19 22:42
|-
|[[Os02g0232100|'''''HEI10''''']]
|[[Os02g0232100]]
| 8.485
| 15567
| 0.545
| 2
| 2
| 2015/5/14 13:36
|-
|[[Os04g0452500|'''''ZEP1''''']]
|[[Os04g0452500]]
| 8.484
| 8484
| 1
| 1
| 1
| 2014/5/31 16:56
|-
|[[Os09g0363900|'''''ONI3''''']]
|[[Os09g0363900]]
| 8.473
| 12412
| 0.683
| 3
| 3
| 2015/6/12 17:40
|-
|[[Os09g0426800|'''''WSL2''''']]
|[[Os09g0426800]]
| 8.447
| 9634
| 0.877
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os01g0253300|'''''alpha-1a''''']]
|[[Os01g0253300]]
| 8.439
| 17745
| 0.476
| 5
| 5
| 2015/5/13 15:07
|-
|[[Os06g0683400|'''''OsCCD1''''']]
|[[Os06g0683400]]
| 8.438
| 8438
| 1
| 1
| 1
| 2016/6/12 14:00
|-
|[[Os09g0522000|'''''OsDREB''''']]
|[[Os09g0522000]]
| 8.335
| 8335
| 1
| 1
| 1
| 2014/5/24 21:12
|-
|[[Os02g0580300|'''''GID2''''']]
|[[Os02g0580300]]
| 8.329
| 15752
| 0.529
| 2
| 2
| 2015/5/14 13:44
|-
|[[Os08g0499300|'''''OsWRKY30''''']]
|[[Os08g0499300]]
| 8.324
| 17032
| 0.489
| 2
| 2
| 2015/6/12 17:32
|-
|[[Os08g0445700|'''''TPS''''']]
|[[Os08g0445700]]
| 8.317
| 10922
| 0.761
| 2
| 2
| 2015/6/12 17:31
|-
|[[Os10g0505700|'''''LTPs''''']]
|[[Os10g0505700]]
| 8.312
| 16220
| 0.512
| 5
| 6
| 2015/6/13 16:46
|-
|[[Os11g0559200|'''''OsXa21''''']]
|[[Os11g0559200]]
| 8.294
| 15586
| 0.532
| 6
| 9
| 2015/6/13 17:08
|-
|[[Os03g0179400|'''''GUDK''''']]
|[[Os03g0179400]]
| 8.292
| 14840
| 0.559
| 2
| 2
| 2015/6/12 13:04
|-
|[[Os02g0553200|'''''OsAPx8''''']]
|[[Os02g0553200]]
| 8.204
| 8204
| 1
| 1
| 1
| 2014/6/8 16:03
|-
|[[Os01g0571300|'''''OsHsfA7''''']]
|[[Os01g0571300]]
| 8.184
| 14946
| 0.548
| 2
| 2
| 2015/5/13 15:16
|-
|[[Os09g0401100|'''''STR1''''']]
|[[Os09g0401100]]
| 8.183
| 17216
| 0.475
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os02g0181300|'''''WRKY''''']]
|[[Os02g0181300]]
| 8.174
| 13252
| 0.617
| 2
| 2
| 2015/5/14 13:24
|-
|[[Os05g0346200|'''''OsDREB2B2''''']]
|[[Os05g0346200]]
| 8.14
| 8233
| 0.989
| 2
| 3
| 2014/6/5 17:14
|-
|[[Os09g0502100|'''''LGD1''''']]
|[[Os09g0502100]]
| 8.139
| 15501
| 0.525
| 2
| 2
| 2015/6/12 22:35
|-
|[[Os03g0820300|'''''ZFP182''''']]
|[[Os03g0820300]]
| 8.137
| 11604
| 0.701
| 2
| 2
| 2015/5/15 13:41
|-
|[[Os03g0230300|'''''OsSRO1c''''']]
|[[Os03g0230300]]
| 8.029
| 15193
| 0.528
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os07g0438800|'''''OsPHR2''''']]
|[[Os07g0438800]]
| 8.026
| 15610
| 0.514
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os02g0534400|'''''OsCIN1''''']]
|[[Os02g0534400]]
| 7.997
| 16635
| 0.481
| 2
| 2
| 2015/5/14 13:41
|-
|[[Os06g0165600|'''''OsDREB1D''''']]
|[[Os06g0165600]]
| 7.982
| 11937
| 0.669
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os11g0490600|'''''LAZY1''''']]
|[[Os11g0490600]]
| 7.98
| 16603
| 0.481
| 4
| 5
| 2015/6/13 17:07
|-
|[[Os07g0585700|'''''Sdr4''''']]
|[[Os07g0585700]]
| 7.966
| 7966
| 1
| 1
| 1
| 2014/6/9 23:14
|-
|[[Os01g0194300|'''''OsNPR1''''']]
|[[Os01g0194300]]
| 7.966
| 11111
| 0.717
| 2
| 2
| 2015/5/13 14:59
|-
|[[Os01g0869900|'''''SNF1''''']]
|[[Os01g0869900]]
| 7.964
| 16289
| 0.489
| 2
| 2
| 2015/5/13 15:42
|-
|[[Os06g0160700|'''''SSSl''''']]
|[[Os06g0160700]]
| 7.962
| 15027
| 0.53
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os09g0451500|'''''PDI''''']]
|[[Os09g0451500]]
| 7.903
| 10040
| 0.787
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os01g0759400|'''''OsCIPK12''''']]
|[[Os01g0759400]]
| 7.902
| 15742
| 0.502
| 2
| 2
| 2015/5/13 15:30
|-
|[[Os06g0205100|'''''OsC1-Myb''''']]
|[[Os06g0205100]]
| 7.891
| 12914
| 0.611
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os09g0244900|'''''Ypt1p''''']]
|[[Os09g0244900]]
| 7.89
| 11371
| 0.694
| 2
| 2
| 2015/6/12 17:38
|-
|'''''[[HTD2]]'''''
|
| 7.887
| 7887
| 1
| 1
| 1
| 2014/6/4 22:20
|-
|[[Os09g0482400|'''''HSP82''''']]
|[[Os09g0482400]]
| 7.873
| 11843
| 0.665
| 2
| 2
| 2015/6/12 17:47
|-
|[[Os10g0478000|'''''TAW1''''']]
|[[Os10g0478000]]
| 7.871
| 12275
| 0.641
| 4
| 5
| 2015/6/13 16:47
|-
|[[Os07g0258400|'''''OsNRAMP1''''']]
|[[Os07g0258400]]
| 7.866
| 13708
| 0.574
| 2
| 2
| 2015/6/12 16:38
|-
|[[Os10g0445400|'''''OsHCI1''''']]
|[[Os10g0445400]]
| 7.848
| 15652
| 0.501
| 6
| 15
| 2015/6/13 16:48
|-
|[[Os01g0273800|'''''OsYUC9''''']]
|[[Os01g0273800]]
| 7.843
| 9988
| 0.785
| 2
| 2
| 2015/5/13 15:10
|-
|[[Os01g0643300|'''''OsPIN10a''''']]
|[[Os01g0643300]]
| 7.839
| 16276
| 0.482
| 3
| 3
| 2015/5/13 15:22
|-
|[[Os06g0286700|'''''Pi9''''']]
|[[Os06g0286700]]
| 7.816
| 16653
| 0.469
| 6
| 9
| 2015/6/12 16:13
|-
|[[Os11g0104300|'''''DWARF53''''']]
|[[Os11g0104300]]
| 7.791
| 11682
| 0.667
| 4
| 4
| 2015/6/13 17:00
|-
|[[Os07g0150700|'''''Os-AKT1''''']]
|[[Os07g0150700]]
| 7.79
| 15994
| 0.487
| 2
| 2
| 2015/6/12 16:32
|-
|[[Os09g0494200|'''''BC15''''']]
|[[Os09g0494200]]
| 7.776
| 7776
| 1
| 1
| 1
| 2014/6/3 23:51
|-
|[[Os03g0181500|'''''ONI1''''']]
|[[Os03g0181500]]
| 7.751
| 12230
| 0.634
| 3
| 4
| 2015/6/12 13:05
|-
|[[Os02g0814200|'''''OsGL1-6''''']]
|[[Os02g0814200]]
| 7.743
| 13379
| 0.579
| 2
| 2
| 2015/5/14 14:03
|-
|[[Os02g0103800|'''''OsLFNR1''''']]
|[[Os02g0103800]]
| 7.686
| 7686
| 1
| 1
| 1
| 2016/6/12 14:12
|-
|[[Os11g0225100|'''''Pia''''']]
|[[Os11g0225100]]
| 7.669
| 12296
| 0.624
| 3
| 3
| 2015/6/13 17:04
|-
|'''''[[Pi1]]'''''
|
| 7.644
| 7644
| 1
| 1
| 1
| 2014/6/5 17:02
|-
|[[Os01g0307500|'''''SKC1''''']]
|[[Os01g0307500]]
| 7.639
| 7639
| 1
| 1
| 1
| 2014/6/7 21:57
|-
|'''''[[Chalk5]]'''''
|
| 7.635
| 7635
| 1
| 1
| 1
| 2014/5/29 11:10
|-
|[[Os08g0140300|'''''TDC''''']]
|[[Os08g0140300]]
| 7.633
| 13769
| 0.554
| 2
| 2
| 2015/6/12 17:26
|-
|[[Os07g0622900|'''''DTM1''''']]
|[[Os07g0622900]]
| 7.632
| 14288
| 0.534
| 2
| 2
| 2015/6/12 16:48
|-
|[[Os01g0292200|'''''OsCIPK1''''']]
|[[Os01g0292200]]
| 7.626
| 12859
| 0.593
| 2
| 2
| 2015/5/13 15:11
|-
|[[Os03g0230500|'''''DSM3''''']]
|[[Os03g0230500]]
| 7.618
| 14126
| 0.539
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os12g0472500|'''''OsTDL1A''''']]
|[[Os12g0472500]]
| 7.581
| 13819
| 0.549
| 4
| 4
| 2015/6/13 17:17
|-
|[[Os03g0262900|'''''glup6''''']]
|[[Os03g0262900]]
| 7.571
| 15719
| 0.482
| 2
| 2
| 2015/6/12 13:38
|-
|[[Os06g0107700|'''''OsLFNR2''''']]
|[[Os06g0107700]]
| 7.533
| 7533
| 1
| 1
| 1
| 2016/6/6 9:33
|-
|[[Os02g57310|'''''Pib''''']]
|[[Os02g57310]]
| 7.531
| 7531
| 1
| 1
| 1
| 2014/6/6 14:27
|-
|[[Os09g0104200|'''''OsRAD51D''''']]
|[[Os09g0104200]]
| 7.502
| 15399
| 0.487
| 3
| 3
| 2015/6/12 17:37
|-
|[[Os06g0142600|'''''Hd17''''']]
|[[Os06g0142600]]
| 7.492
| 11545
| 0.649
| 3
| 3
| 2015/6/12 16:06
|-
|[[Os03g0788500|'''''OsCPK10''''']]
|[[Os03g0788500]]
| 7.454
| 10159
| 0.734
| 2
| 2
| 2015/5/15 13:44
|-
|[[Os06g0139000|'''''F-box''''']]
|[[Os06g0139000]]
| 7.443
| 15282
| 0.487
| 3
| 4
| 2015/6/12 16:05
|-
|[[Os03g0168600|'''''CYP704B2''''']]
|[[Os03g0168600]]
| 7.43
| 12348
| 0.602
| 2
| 2
| 2015/6/12 13:03
|-
|[[Os11g0117400|'''''OsWRKY89''''']]
|[[Os11g0117400]]
| 7.353
| 11607
| 0.633
| 3
| 3
| 2015/6/13 17:01
|-
|[[Os03g0223400|'''''OsGLN1_2''''']]
|[[Os03g0223400]]
| 7.313
| 14417
| 0.507
| 3
| 3
| 2015/6/12 13:35
|-
|[[Os02g0731200|'''''MADS57''''']]
|[[Os02g0731200]]
| 7.311
| 14927
| 0.49
| 2
| 2
| 2015/5/14 13:56
|-
|[[Os09g02650|'''''BC12''''']]
|[[Os09g02650]]
| 7.302
| 7302
| 1
| 1
| 1
| 2014/6/1 19:01
|-
|[[Os01g0859300|'''''OsABI5''''']]
|[[Os01g0859300]]
| 7.265
| 12246
| 0.593
| 2
| 2
| 2015/5/13 15:41
|-
|[[Os08g0105000|'''''Ghd7''''']]
|[[Os08g0105000]]
| 7.237
| 15311
| 0.473
| 4
| 4
| 2015/6/12 17:23
|-
|[[Os03g0110800|'''''OsDRM2''''']]
|[[Os03g0110800]]
| 7.203
| 14838
| 0.485
| 2
| 2
| 2015/6/12 12:57
|-
|[[Os01g0367100|'''''PHD1''''']]
|[[Os01g0367100]]
| 7.2
| 12561
| 0.573
| 3
| 3
| 2015/6/9 9:53
|-
|[[Os02g0191600|'''''OsbZIP16''''']]
|[[Os02g0191600]]
| 7.2
| 13785
| 0.522
| 2
| 2
| 2015/5/14 13:25
|-
|[[Os08g0137250|'''''FIE1''''']]
|[[Os08g0137250]]
| 7.185
| 14660
| 0.49
| 2
| 2
| 2015/6/12 17:25
|-
|[[Os02g0220400|'''''Cga1''''']]
|[[Os02g0220400]]
| 7.158
| 17791
| 0.402
| 6
| 8
| 2015/5/14 13:36
|-
|[[Os10g0404500|'''''SUTs''''']]
|[[Os10g0404500]]
| 7.151
| 7164
| 0.998
| 2
| 2
| 2014/6/7 23:34
|-
|[[Os10g0177200|'''''OsDSR-1''''']]
|[[Os10g0177200]]
| 7.15
| 9017
| 0.793
| 3
| 3
| 2015/6/13 16:45
|-
|[[Os10g0496900|'''''OsPORB''''']]
|[[Os10g0496900]]
| 7.143
| 14022
| 0.509
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os02g0313400|'''''API5''''']]
|[[Os02g0313400]]
| 7.12
| 14554
| 0.489
| 2
| 2
| 2015/5/14 13:39
|-
|[[Os08g0117000|'''''PSS1''''']]
|[[Os08g0117000]]
| 7.092
| 8202
| 0.865
| 2
| 2
| 2015/6/12 17:24
|-
|[[Os08g0531700|'''''MADS-box''''']]
|[[Os08g0531700]]
| 7.054
| 13276
| 0.531
| 2
| 2
| 2015/6/12 17:33
|-
|[[Os06g0499500|'''''GH3''''']]
|[[Os06g0499500]]
| 7.051
| 12958
| 0.544
| 3
| 4
| 2015/6/12 16:15
|-
|[[Os03g0188400|'''''OsSRT1''''']]
|[[Os03g0188400]]
| 7.05
| 12067
| 0.584
| 2
| 2
| 2015/6/12 13:06
|-
|[[Os02g0649900|'''''OsYSL2''''']]
|[[Os02g0649900]]
| 7.031
| 12503
| 0.562
| 2
| 2
| 2015/5/14 13:48
|-
|[[Os09g0442700|'''''OsDDM1''''']]
|[[Os09g0442700]]
| 7.028
| 10589
| 0.664
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os12g0438600|'''''AtCLC-a''''']]
|[[Os12g0438600]]
| 7.022
| 14835
| 0.473
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os07g0124700|'''''CRL5''''']]
|[[Os07g0124700]]
| 6.998
| 14469
| 0.484
| 2
| 2
| 2015/6/12 16:31
|-
|[[Os11g0639100|'''''Pi54''''']]
|[[Os11g0639100]]
| 6.934
| 11269
| 0.615
| 4
| 4
| 2015/6/13 17:09
|-
|[[Os01g0615050|'''''OCPI1''''']]
|[[Os01g0615050]]
| 6.92
| 9869
| 0.701
| 2
| 2
| 2015/5/13 15:18
|-
|[[Os12g0610200|'''''OsPIL11''''']]
|[[Os12g0610200]]
| 6.911
| 12604
| 0.548
| 4
| 4
| 2015/6/13 17:18
|-
|[[Os03g0123300|'''''TAD1''''']]
|[[Os03g0123300]]
| 6.87
| 15272
| 0.45
| 4
| 8
| 2015/6/12 13:00
|-
|[[Os07g0682800|'''''rth1''''']]
|[[Os07g0682800]]
| 6.853
| 13550
| 0.506
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os11g0446000|'''''RSS3''''']]
|[[Os11g0446000]]
| 6.838
| 13942
| 0.49
| 5
| 5
| 2015/6/13 17:07
|-
|[[Os07g0182900|'''''OsMET1a''''']]
|[[Os07g0182900]]
| 6.821
| 13295
| 0.513
| 5
| 11
| 2015/6/12 16:33
|-
|[[Os01g0205700|'''''OsGSK1''''']]
|[[Os01g0205700]]
| 6.813
| 12490
| 0.545
| 2
| 2
| 2015/5/13 15:04
|-
|[[Os05g0333200|'''''GPA1''''']]
|[[Os05g0333200]]
| 6.778
| 8703
| 0.779
| 2
| 2
| 2014/6/9 9:17
|-
|[[Os10g0167600|'''''OsCPDP''''']]
|[[Os10g0167600]]
| 6.756
| 14570
| 0.464
| 4
| 4
| 2015/6/13 16:45
|-
|[[Os07g0227800|'''''OsABC1-9''''']]
|[[Os07g0227800]]
| 6.744
| 10826
| 0.623
| 2
| 2
| 2015/6/12 16:37
|-
|[[Os10g0567400|'''''OsCAO1''''']]
|[[Os10g0567400]]
| 6.732
| 13437
| 0.501
| 3
| 3
| 2015/6/13 16:58
|-
|'''''[[DEP2]]'''''
|
| 6.724
| 6763
| 0.994
| 3
| 7
| 2014/6/10 22:30
|-
|[[Os07g0592600|'''''OsMGH3''''']]
|[[Os07g0592600]]
| 6.72
| 15320
| 0.439
| 5
| 11
| 2015/6/12 16:46
|-
|[[Os11g0126900|'''''OsNAC10''''']]
|[[Os11g0126900]]
| 6.705
| 6705
| 1
| 1
| 1
| 2014/5/24 12:41
|-
|[[Os09g0561600|'''''OsDEES1''''']]
|[[Os09g0561600]]
| 6.699
| 11352
| 0.59
| 2
| 2
| 2015/6/13 16:42
|-
|'''''[[Sub1A]]'''''
|
| 6.679
| 6679
| 1
| 1
| 1
| 2014/6/4 16:03
|-
|[[Os08g0126300|'''''OsGAPDH''''']]
|[[Os08g0126300]]
| 6.658
| 13730
| 0.485
| 2
| 2
| 2015/6/12 17:24
|-
|[[Os10g0533600|'''''OsMPK6''''']]
|[[Os10g0533600]]
| 6.522
| 8207
| 0.795
| 3
| 3
| 2015/6/13 16:46
|-
|[[Os10g0397400|'''''dwarf2''''']]
|[[Os10g0397400]]
| 6.52
| 11105
| 0.587
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os06g0712700|'''''OsMADS16''''']]
|[[Os06g0712700]]
| 6.51
| 7624
| 0.854
| 2
| 2
| 2014/6/9 16:43
|-
|[[Os08g0237000|'''''OsXTH8''''']]
|[[Os08g0237000]]
| 6.46
| 6460
| 1
| 1
| 1
| 2014/6/9 18:44
|-
|[[Os02g0811000|'''''TH1''''']]
|[[Os02g0811000]]
| 6.453
| 11487
| 0.562
| 2
| 2
| 2015/5/14 14:02
|-
|[[Os07g0505200|'''''OsSPL13''''']]
|[[Os07g0505200]]
| 6.444
| 6444
| 1
| 1
| 1
| 2016/6/13 9:49
|-
|[[Os11g0247300|'''''Srs5''''']]
|[[Os11g0247300]]
| 6.442
| 13081
| 0.492
| 4
| 4
| 2015/6/13 17:05
|-
|[[AY986492|'''''Xa27''''']]
|[[AY986492]]
| 6.408
| 6408
| 1
| 2
| 2
| 2014/6/10 21:12
|-
|[[Os06g0700700|'''''OsHMA2''''']]
|[[Os06g0700700]]
| 6.404
| 6404
| 1
| 1
| 1
| 2014/6/3 20:16
|-
|[[Os02g0771400|'''''OsPFA-DSP2''''']]
|[[Os02g0771400]]
| 6.399
| 6702
| 0.955
| 2
| 3
| 2014/5/12 16:03
|-
|[[Os06g0127800|'''''DLT''''']]
|[[Os06g0127800]]
| 6.393
| 10797
| 0.592
| 2
| 2
| 2015/6/12 16:03
|-
|[[Os02g0120500|'''''OsTDR''''']]
|[[Os02g0120500]]
| 6.372
| 6372
| 1
| 1
| 1
| 2015/5/14 13:19
|-
|[[Os03g0854500|'''''OsHsfs''''']]
|[[Os03g0854500]]
| 6.367
| 10086
| 0.631
| 2
| 2
| 2015/5/15 13:40
|-
|[[Os06g0275000|'''''Hd1''''']]
|[[Os06g0275000]]
| 6.307
| 11994
| 0.526
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os02g0759800|'''''OsSKIPa''''']]
|[[Os02g0759800]]
| 6.249
| 12883
| 0.485
| 2
| 2
| 2015/5/14 14:00
|-
|[[Os08g0101000|'''''IDEF1''''']]
|[[Os08g0101000]]
| 6.239
| 10862
| 0.574
| 2
| 2
| 2015/6/12 17:22
|-
|[[Os09g0456200|'''''OsbZIP72''''']]
|[[Os09g0456200]]
| 6.23
| 10901
| 0.572
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os12g0101600|'''''leaf2''''']]
|[[Os12g0101600]]
| 6.221
| 35095
| 0.177
| 2
| 3
| 2014/5/31 21:22
|-
|[[Os06g0695800|'''''STAR1''''']]
|[[Os06g0695800]]
| 6.213
| 8582
| 0.724
| 2
| 2
| 2015/6/12 16:24
|-
|[[Os02g0606700|'''''RSS1''''']]
|[[Os02g0606700]]
| 6.198
| 12432
| 0.499
| 2
| 2
| 2015/5/14 13:44
|-
|[[Os11g0210300|'''''Adh1''''']]
|[[Os11g0210300]]
| 6.196
| 12384
| 0.5
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os02g0736400|'''''OsDHODH''''']]
|[[Os02g0736400]]
| 6.183
| 11839
| 0.522
| 2
| 2
| 2015/5/14 13:57
|-
|[[Os08g0549100|'''''OsAPx4''''']]
|[[Os08g0549100]]
| 6.175
| 10093
| 0.612
| 2
| 2
| 2015/6/12 17:35
|-
|[[Os09g0452200|'''''LYP4''''']]
|[[Os09g0452200]]
| 6.171
| 11987
| 0.515
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os02g0170300|'''''OsMADS29''''']]
|[[Os02g0170300]]
| 6.166
| 12582
| 0.49
| 3
| 4
| 2015/5/14 13:23
|-
|[[Os03g0224700|'''''Hsfs''''']]
|[[Os03g0224700]]
| 6.166
| 11925
| 0.517
| 4
| 4
| 2015/6/12 13:35
|-
|[[Os07g0558500|'''''THF1''''']]
|[[Os07g0558500]]
| 6.078
| 12744
| 0.477
| 5
| 9
| 2015/6/12 16:45
|-
|[[Os09g0511000|'''''OsCERK1''''']]
|[[Os09g0511000]]
| 6.076
| 12097
| 0.502
| 2
| 2
| 2015/6/12 22:35
|-
|'''''[[OsWRKY13]]'''''
|
| 6.069
| 6101
| 0.995
| 2
| 3
| 2014/6/4 20:18
|-
|[[Os06g0308100|'''''OsIBR5''''']]
|[[Os06g0308100]]
| 6.062
| 12455
| 0.487
| 2
| 2
| 2015/6/12 16:13
|-
|[[Os11g0113700|'''''OsCIPK15''''']]
|[[Os11g0113700]]
| 5.961
| 12261
| 0.486
| 3
| 3
| 2015/6/13 17:00
|-
|[[Os02g0656600|'''''GPA3''''']]
|[[Os02g0656600]]
| 5.915
| 10022
| 0.59
| 2
| 2
| 2015/5/14 13:50
|-
|[[Os01g0733200|'''''OsHsfC1b''''']]
|[[Os01g0733200]]
| 5.889
| 5889
| 1
| 1
| 1
| 2014/5/31 11:56
|-
|[[Os01g0785400|'''''GH3''''']]
|[[Os01g0785400]]
| 5.864
| 10600
| 0.553
| 2
| 2
| 2015/5/13 15:34
|-
|[[Os04g0541700|'''''Oshox22''''']]
|[[Os04g0541700]]
| 5.857
| 6037
| 0.97
| 2
| 3
| 2014/6/8 16:10
|-
|[[Os08g0140500|'''''TDC-3''''']]
|[[Os08g0140500]]
| 5.829
| 11343
| 0.514
| 2
| 2
| 2015/6/12 17:26
|-
|'''''[[IPK1]]'''''
|
| 5.803
| 5803
| 1
| 1
| 1
| 2014/6/8 16:55
|-
|[[Os09g0522100|'''''CBF''''']]
|[[Os09g0522100]]
| 5.713
| 9270
| 0.616
| 2
| 2
| 2015/6/12 22:36
|-
|[[Os01g0177900|'''''OsABCG31''''']]
|[[Os01g0177900]]
| 5.693
| 11327
| 0.503
| 2
| 2
| 2015/5/13 14:58
|-
|[[Os02g0149800|'''''OsPP18''''']]
|[[Os02g0149800]]
| 5.681
| 11452
| 0.496
| 2
| 2
| 2015/5/14 13:22
|-
|[[Os01g0831000|'''''LAX''''']]
|[[Os01g0831000]]
| 5.68
| 9517
| 0.597
| 2
| 2
| 2015/5/13 15:37
|-
|[[Os05g0580500|'''''OsRAD21-4''''']]
|[[Os05g0580500]]
| 5.66
| 5660
| 1
| 1
| 1
| 2014/5/23 11:03
|-
|'''''[[OsCERK1]]'''''
|
| 5.61
| 5610
| 1
| 1
| 1
| 2014/6/1 18:31
|-
|[[Os11g0116200|'''''LTPs''''']]
|[[Os11g0116200]]
| 5.602
| 7206
| 0.777
| 3
| 3
| 2015/6/13 17:00
|-
|[[Os09g0567800|'''''Lipase''''']]
|[[Os09g0567800]]
| 5.558
| 5558
| 1
| 1
| 1
| 2014/6/6 16:24
|-
|[[Os06g0610350|'''''OsMOC1''''']]
|[[Os06g0610350]]
| 5.547
| 5547
| 1
| 1
| 1
| 2016/6/12 13:57
|-
|[[Os02g0657000|'''''ARAG1''''']]
|[[Os02g0657000]]
| 5.536
| 9210
| 0.601
| 2
| 2
| 2015/5/14 13:51
|-
|'''''[[Wbph8]]'''''
|
| 5.531
| 5531
| 1
| 1
| 1
| 2014/6/10 18:50
|-
|[[Os07g0563300|'''''GD1''''']]
|[[Os07g0563300]]
| 5.487
| 11105
| 0.494
| 2
| 2
| 2015/6/12 16:45
|-
|[[Os06g0701700|'''''OsHKT2;1''''']]
|[[Os06g0701700]]
| 5.432
| 8295
| 0.655
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os10g0419200|'''''RID1''''']]
|[[Os10g0419200]]
| 5.432
| 9118
| 0.596
| 3
| 3
| 2015/6/13 16:44
|-
|'''''[[OsCEBiP]]'''''
|
| 5.419
| 5419
| 1
| 1
| 1
| 2014/6/8 12:32
|-
|'''''[[Xa10]]'''''
|
| 5.416
| 5416
| 1
| 1
| 1
| 2014/6/1 16:52
|-
|[[Os03g0272300|'''''OsSDIR1''''']]
|[[Os03g0272300]]
| 5.41
| 9862
| 0.549
| 2
| 2
| 2015/6/12 13:39
|-
|[[Os10g0528300|'''''GSTs''''']]
|[[Os10g0528300]]
| 5.364
| 9566
| 0.561
| 3
| 3
| 2015/6/13 16:46
|-
|'''''[[Badh2]]'''''
|
| 5.363
| 5363
| 1
| 1
| 1
| 2014/6/8 19:38
|-
|[[Os03g0233900|'''''Hbs''''']]
|[[Os03g0233900]]
| 5.348
| 9011
| 0.593
| 2
| 2
| 2015/6/12 13:38
|-
|'''''[[Xa21]]'''''
|
| 5.345
| 5345
| 1
| 1
| 1
| 2014/6/1 13:37
|-
|'''''[[Bls1]]'''''
|
| 5.308
| 5308
| 1
| 1
| 1
| 2014/5/24 15:17
|-
|[[Os06g0157700|'''''Hd3''''']]
|[[Os06g0157700]]
| 5.304
| 10277
| 0.516
| 2
| 2
| 2015/6/12 16:06
|-
|[[Os02g0260200|'''''LP''''']]
|[[Os02g0260200]]
| 5.302
| 7745
| 0.685
| 2
| 2
| 2015/5/14 13:37
|-
|[[Os03g0232600|'''''TUD1''''']]
|[[Os03g0232600]]
| 5.249
| 10595
| 0.495
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os03g0125100|'''''OsHYD3''''']]
|[[Os03g0125100]]
| 5.183
| 10331
| 0.502
| 2
| 2
| 2015/6/12 13:01
|-
|[[Os06g0212900|'''''ORF3''''']]
|[[Os06g0212900]]
| 5.175
| 6651
| 0.778
| 3
| 3
| 2015/6/12 16:09
|-
|[[Os02g0491300|'''''MTR1''''']]
|[[Os02g0491300]]
| 5.166
| 10047
| 0.514
| 2
| 2
| 2015/5/14 13:40
|-
|[[Os09g0470500|'''''Oshox4''''']]
|[[Os09g0470500]]
| 5.144
| 9661
| 0.532
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os09g0439800|'''''DRO1''''']]
|[[Os09g0439800]]
| 5.122
| 8022
| 0.638
| 3
| 4
| 2015/6/12 17:43
|-
|[[Os12g0555500|'''''PBZ1''''']]
|[[Os12g0555500]]
| 5.108
| 8929
| 0.572
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os11g0508600|'''''Os-11N3''''']]
|[[Os11g0508600]]
| 5.066
| 7754
| 0.653
| 3
| 3
| 2015/6/13 17:07
|-
|[[Os08g0174500|'''''OsDTH8''''']]
|[[Os08g0174500]]
| 5.017
| 9397
| 0.534
| 3
| 3
| 2015/6/12 17:28
|-
|[[Os03g0267200|'''''sHSP17.7''''']]
|[[Os03g0267200]]
| 5.008
| 7991
| 0.627
| 2
| 2
| 2015/6/12 13:39
|-
|[[Os06g0622700|'''''OsbZIP50 ''''']]
|[[Os06g0622700]]
| 5
| 9868
| 0.507
| 2
| 2
| 2015/6/12 16:19
|-
|'''''[[SBP]]'''''
|
| 4.997
| 4997
| 1
| 1
| 1
| 2013/7/21 18:43
|-
|[[Os05g0465800|'''''PI3K''''']]
|[[Os05g0465800]]
| 4.939
| 4939
| 1
| 1
| 1
| 2014/6/6 16:19
|-
|[[Os10g0491000|'''''BSP''''']]
|[[Os10g0491000]]
| 4.912
| 8991
| 0.546
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os01g0206700|'''''OsCIPK05''''']]
|[[Os01g0206700]]
| 4.909
| 9664
| 0.508
| 2
| 2
| 2015/5/13 15:05
|-
|[[Os06g0643300|'''''RISBZ1''''']]
|[[Os06g0643300]]
| 4.869
| 7953
| 0.612
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os03g0180800|'''''OsTIFY11a''''']]
|[[Os03g0180800]]
| 4.859
| 8158
| 0.596
| 2
| 2
| 2015/6/12 13:04
|-
|'''''[[BPH_gene]]'''''
|
| 4.857
| 4857
| 1
| 2
| 2
| 2014/6/11 11:14
|-
|[[Os01g0805600|'''''CycB1''''']]
|[[Os01g0805600]]
| 4.842
| 4842
| 1
| 1
| 1
| 2014/6/5 18:11
|-
|[[Os06g0701600|'''''HKT''''']]
|[[Os06g0701600]]
| 4.831
| 7482
| 0.646
| 2
| 2
| 2015/6/12 16:25
|-
|[[Os08g0531600|'''''OsSPL16''''']]
|[[Os08g0531600]]
| 4.818
| 4825
| 0.999
| 2
| 2
| 2014/5/27 23:11
|-
|[[Os06g0254700|'''''OsCLO-6''''']]
|[[Os06g0254700]]
| 4.802
| 7514
| 0.639
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os01g0615100|'''''OCPI2''''']]
|[[Os01g0615100]]
| 4.794
| 7379
| 0.65
| 2
| 2
| 2015/5/13 15:19
|-
|'''''[[HSF]]'''''
|
| 4.772
| 4781
| 0.998
| 2
| 2
| 2013/7/21 20:57
|-
|[[Os06g0125800|'''''OsBBI1''''']]
|[[Os06g0125800]]
| 4.629
| 9410
| 0.492
| 2
| 2
| 2015/6/12 16:02
|-
|[[Os07g0628500|'''''OsbHLH1''''']]
|[[Os07g0628500]]
| 4.606
| 8573
| 0.537
| 2
| 2
| 2015/6/12 16:48
|-
|[[Os07g0694700|'''''APX''''']]
|[[Os07g0694700]]
| 4.569
| 8480
| 0.539
| 2
| 2
| 2015/6/12 16:50
|-
|[[Os01g0293100|'''''TIP2''''']]
|[[Os01g0293100]]
| 4.568
| 8480
| 0.539
| 2
| 2
| 2015/5/13 15:12
|-
|'''''[[Rl14]]'''''
|
| 4.564
| 4764
| 0.958
| 2
| 2
| 2014/6/10 11:19
|-
|'''''[[OsRPA2]]'''''
|
| 4.552
| 4552
| 1
| 1
| 1
| 2014/6/6 9:13
|-
|[[Os06g0604000|'''''OsWR2''''']]
|[[Os06g0604000]]
| 4.53
| 8229
| 0.55
| 2
| 2
| 2015/6/12 16:18
|-
|[[Os01g0192000|'''''OsDOS''''']]
|[[Os01g0192000]]
| 4.527
| 4527
| 1
| 1
| 1
| 2015/7/30 23:13
|-
|[[Os01g0922800|'''''OsMADS51''''']]
|[[Os01g0922800]]
| 4.506
| 4506
| 1
| 1
| 1
| 2014/5/24 18:45
|-
|[[Os02g0787300|'''''OsRac1''''']]
|[[Os02g0787300]]
| 4.483
| 6886
| 0.651
| 2
| 2
| 2015/5/14 14:01
|-
|[[Os09g0439200|'''''OsJAZ8''''']]
|[[Os09g0439200]]
| 4.477
| 8745
| 0.512
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os01g0822900|'''''Dwarf1''''']]
|[[Os01g0822900]]
| 4.447
| 7550
| 0.589
| 3
| 4
| 2015/5/13 15:36
|-
|[[Os08g0167500|'''''CRR6''''']]
|[[Os08g0167500]]
| 4.432
| 8906
| 0.498
| 2
| 2
| 2015/6/12 17:27
|-
|'''''[[Sucrose_synthase]]'''''
|
| 4.428
| 4436
| 0.998
| 2
| 2
| 2013/7/18 11:20
|-
|'''''[[CL971152]]'''''
|
| 4.417
| 4472
| 0.988
| 2
| 2
| 2014/6/10 21:51
|-
|[[Os12g0603700|'''''OsCIPK04''''']]
|[[Os12g0603700]]
| 4.375
| 9322
| 0.469
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os02g0618400|'''''OsMPS''''']]
|[[Os02g0618400]]
| 4.347
| 8707
| 0.499
| 2
| 2
| 2015/5/14 13:45
|-
|[[Os03g0182800|'''''OsDERF1''''']]
|[[Os03g0182800]]
| 4.322
| 6519
| 0.663
| 2
| 2
| 2015/6/12 13:05
|-
|'''''[[ARF]]'''''
|
| 4.308
| 4308
| 1
| 1
| 1
| 2013/7/21 20:46
|-
|[[Os03g0183000|'''''OsRAF''''']]
|[[Os03g0183000]]
| 4.286
| 4286
| 1
| 1
| 1
| 2014/6/9 20:10
|-
|[[Os02g0654700|'''''AP59''''']]
|[[Os02g0654700]]
| 4.285
| 8306
| 0.516
| 2
| 2
| 2015/5/14 13:49
|-
|[[Os09g0466400|'''''OsZHD1''''']]
|[[Os09g0466400]]
| 4.265
| 8095
| 0.527
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os03g0103300|'''''qLTG3''''']]
|[[Os03g0103300]]
| 4.188
| 7457
| 0.562
| 2
| 2
| 2015/6/12 12:56
|-
|[[Os01g0834400|'''''OsHAP3A''''']]
|[[Os01g0834400]]
| 4.109
| 4109
| 1
| 1
| 1
| 2014/5/31 19:19
|-
|[[Os07g0512200|'''''OsAtg8''''']]
|[[Os07g0512200]]
| 4.095
| 7690
| 0.533
| 4
| 4
| 2015/6/12 16:43
|-
|'''''[[Bph9]]'''''
|
| 4.084
| 4084
| 1
| 1
| 1
| 2014/6/9 12:23
|-
|[[Os06g0181700|'''''OsWR1''''']]
|[[Os06g0181700]]
| 4.083
| 7433
| 0.549
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os06g0157500|'''''RFT1''''']]
|[[Os06g0157500]]
| 4.013
| 7888
| 0.509
| 3
| 3
| 2015/6/12 16:06
|-
|[[Os09g0537700|'''''OsRNS4''''']]
|[[Os09g0537700]]
| 3.992
| 6731
| 0.593
| 2
| 2
| 2015/6/12 22:36
|-
|[[Os02g0610500|'''''OsCOL4''''']]
|[[Os02g0610500]]
| 3.946
| 3946
| 1
| 1
| 1
| 2014/5/20 11:57
|-
|[[Os07g0529600|'''''OsDR8''''']]
|[[Os07g0529600]]
| 3.915
| 6908
| 0.567
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os09g0106700|'''''AKT1''''']]
|[[Os09g0106700]]
| 3.845
| 6498
| 0.592
| 2
| 2
| 2015/6/12 17:37
|-
|[[Os07g0568700|'''''OsFOR1''''']]
|[[Os07g0568700]]
| 3.845
| 6600
| 0.583
| 2
| 2
| 2015/6/12 16:46
|-
|'''''[[Pik-p]]'''''
|
| 3.816
| 3816
| 1
| 1
| 1
| 2014/6/6 10:16
|-
|[[Os06g0493100|'''''Bphi008a''''']]
|[[Os06g0493100]]
| 3.804
| 7241
| 0.525
| 2
| 2
| 2015/6/12 16:14
|-
|[[Os02g0552700|'''''OsZFP6''''']]
|[[Os02g0552700]]
| 3.779
| 6604
| 0.572
| 2
| 2
| 2015/5/14 13:43
|-
|[[Os12g0100500|'''''COG2267''''']]
|[[Os12g0100500]]
| 3.729
| 5669
| 0.658
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os07g0129200|'''''OsPR1''''']]
|[[Os07g0129200]]
| 3.716
| 6629
| 0.561
| 2
| 2
| 2015/6/12 16:32
|-
|[[Os10g0558900|'''''RL14''''']]
|[[Os10g0558900]]
| 3.699
| 7398
| 0.5
| 5
| 9
| 2015/6/13 16:57
|-
|[[Os01g0177400|'''''ACO1''''']]
|[[Os01g0177400]]
| 3.693
| 6293
| 0.587
| 3
| 3
| 2015/5/13 14:57
|-
|[[Os09g0380200|'''''YLC1''''']]
|[[Os09g0380200]]
| 3.69
| 6890
| 0.536
| 3
| 3
| 2015/6/12 17:40
|-
|[[Os08g0163400|'''''OsSIG1''''']]
|[[Os08g0163400]]
| 3.662
| 3662
| 1
| 1
| 1
| 2014/6/9 20:52
|-
|[[Os09g0396900|'''''OsVIT2''''']]
|[[Os09g0396900]]
| 3.437
| 6527
| 0.527
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os03g0786400|'''''OsCKX2''''']]
|[[Os03g0786400]]
| 3.372
| 3372
| 1
| 1
| 1
| 2014/5/20 0:08
|-
|'''''[[Bhp-3]]'''''
|
| 3.33
| 3330
| 1
| 1
| 1
| 2014/5/31 23:33
|-
|[[Os05g0489900|'''''OsCCaMK''''']]
|[[Os05g0489900]]
| 3.212
| 6389
| 0.503
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0549600|'''''UDT1''''']]
|[[Os07g0549600]]
| 3.204
| 5875
| 0.545
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os11g0582500|'''''OsC6''''']]
|[[Os11g0582500]]
| 3.13
| 5666
| 0.552
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os03g0135700|'''''RAI1''''']]
|[[Os03g0135700]]
| 3.126
| 3126
| 1
| 1
| 1
| 2014/6/7 0:43
|-
|[[Os09g0459200|'''''SG1''''']]
|[[Os09g0459200]]
| 3.094
| 5090
| 0.608
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os11g0523700|'''''OsICE1''''']]
|[[Os11g0523700]]
| 3.071
| 3079
| 0.997
| 2
| 2
| 2014/6/3 13:41
|-
|[[Os01g0928000|'''''OsICE2''''']]
|[[Os01g0928000]]
| 3.071
| 3079
| 0.997
| 2
| 2
| 2014/6/3 13:41
|-
|[[Os09g0522200|'''''OsDREB1A''''']]
|[[Os09g0522200]]
| 3.031
| 5920
| 0.512
| 3
| 3
| 2015/6/12 22:36
|-
|[[Os06g0127100|'''''OsDREB1C''''']]
|[[Os06g0127100]]
| 3.015
| 5846
| 0.516
| 3
| 3
| 2015/6/12 16:02
|-
|[[Os10g0573400|'''''OsPYL10''''']]
|[[Os10g0573400]]
| 3.009
| 6148
| 0.489
| 4
| 4
| 2015/6/13 16:58
|-
|[[Os01g0274800|'''''CSA''''']]
|[[Os01g0274800]]
| 2.805
| 2805
| 1
| 1
| 1
| 2014/5/28 21:34
|-
|[[BGIOSGA033504|'''''csld4''''']]
|[[BGIOSGA033504]]
| 2.803
| 2818
| 0.995
| 2
| 2
| 2014/6/3 16:43
|-
|[[Os11g0454000|'''''rab16c''''']]
|[[Os11g0454000]]
| 2.786
| 5342
| 0.522
| 3
| 3
| 2015/6/13 17:07
|-
|[[Os10g0148000|'''''OsDIL''''']]
|[[Os10g0148000]]
| 2.697
| 5106
| 0.528
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os08g0566600|'''''PGR5''''']]
|[[Os08g0566600]]
| 2.632
| 4314
| 0.61
| 2
| 2
| 2015/6/12 17:35
|-
|[[Os03g0150200|'''''OsAP23''''']]
|[[Os03g0150200]]
| 2.621
| 5115
| 0.512
| 2
| 2
| 2015/6/12 13:03
|-
|[[Os05g0341600|'''''RAB21''''']]
|[[Os05g0341600]]
| 2.592
| 2640
| 0.982
| 2
| 3
| 2014/6/1 17:02
|-
|[[Os07g0191600|'''''STR2''''']]
|[[Os07g0191600]]
| 2.541
| 2541
| 1
| 1
| 1
| 2014/6/11 19:08
|-
|[[Os05g0107700|'''''xa5''''']]
|[[Os05g0107700]]
| 2.152
| 2152
| 1
| 1
| 1
| 2014/6/8 17:23
|-
|[[Os07g0492000|'''''OsNDPK1''''']]
|[[Os07g0492000]]
| 1.777
| 1777
| 1
| 1
| 1
| 2014/6/9 23:45
|-
|[[Os03g0741100|'''''OsbHLH148''''']]
|[[Os03g0741100]]
| 1.578
| 1578
| 1
| 1
| 1
| 2014/5/19 3:18
|}

Os03g0135700

2017-05-07T03:35:59Z

Xysj2027: /* Annotated Information */

The rice '''''Os03g0135700''''' was reported as '''''RAI1''''' in 2012 by researchers from Japan.

==Annotated Information==
[[File:13-Os03g0135700.png|right|thumb|427px|]]
===Gene Symbol===
*'''''Os03g0135700''''' '''''<=>''''' ''''' OsbHLH003, RAI1'''''
===Function===
* The Rac/Rop GTPase OsRac1 plays an essential role in rice immunity.
* RAI1 encodes a putative basic helix–loop–helix transcription factor.
* RAI1 is involved in defense responses in rice. RAI1 interacted with OsMAPK3 and OsMAPK6 proteins in vivo and in vitro.
* RAI1 was phosphorylated by OsMAPK3/6 and OsMKK4-dd in vitro.
* RAI1 is the first transcription factor acting downstream of OsRac1.<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />

===Phenotypic analysis===
* Overexpression of OsMAPK6 and/or OsMAPK3 together with OsMKK4-dd increased PAL1 and OsWRKY19 expression in rice protoplasts.
* Therefore, the regulation of PAL1 and OsWRKY19 expression by RAI1 could be controlled via an OsMKK4–OsMAPK3/6 cascade.
===Expression===
* RAI1 is up-regulated by the sphingolipid and chitin elicitors, resulting in the expression of elicitor-responsive genes.

=== Subcellular localization ===
* RAI1 protein was localized in protoplasts.

===Evolution===
* The RAI1 protein has a bHLH domain that is conserved in homologous rice proteins.
* The basic domain at the N-terminus of bHLH is known to be important for binding to DNA elements such as the cis-elements in the promoters of target genes.
* The HLH domain includes two amphipathic a-helices with a linking loop.
* These a-helices may function in the formation of homodimers or heterodimers with other bHLH proteins .

==Labs working on this gene==
* Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan
* Graduate School of Agriculture and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-0032 Japan
* Agricultural and Veterinary Laboratories, Meiji Seika Kaisha, Kohoku-ku, Yokohama, 222-8567 Japan
* Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan

==References==
<references>
<ref name="ref1"> Kim SH, Oikawa T, Kyozuka J, Wong HL, Umemura K, Kishi-Kaboshi M, Takahashi A, Kawano Y, Kawasaki T, Shimamoto K. The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity. Plant Cell Physiol. 2012 Apr;53(4):740-54. doi: 10.1093/pcp/pcs033. Epub 2012 Mar 21. PubMed PMID: 22437844. </ref>
<ref name="ref2">Atchley, W.R., Terhalle, W. and Dress, A. (1999) Positional dependence,cliques, and predictive motifs in the bHLH protein domain. J. Mol.
Evol. 48: 501–516.</ref>
<ref name="ref3">Berken, A. (2006) ROPs in the spotlight of plant signal transduction.Cell. Mol. Life Sci. 63: 2446–2459</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0135700

2017-05-07T03:35:42Z

Xysj2027:

The rice '''''Os03g0135700''''' was reported as '''''RAI1''''' in 2012 by researchers from Japan.

==Annotated Information==
[[File:13-Os03g0135700.png|right|thumb|327px|]]
===Gene Symbol===
*'''''Os03g0135700''''' '''''<=>''''' ''''' OsbHLH003, RAI1'''''
===Function===
* The Rac/Rop GTPase OsRac1 plays an essential role in rice immunity.
* RAI1 encodes a putative basic helix–loop–helix transcription factor.
* RAI1 is involved in defense responses in rice. RAI1 interacted with OsMAPK3 and OsMAPK6 proteins in vivo and in vitro.
* RAI1 was phosphorylated by OsMAPK3/6 and OsMKK4-dd in vitro.
* RAI1 is the first transcription factor acting downstream of OsRac1.<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />

===Phenotypic analysis===
* Overexpression of OsMAPK6 and/or OsMAPK3 together with OsMKK4-dd increased PAL1 and OsWRKY19 expression in rice protoplasts.
* Therefore, the regulation of PAL1 and OsWRKY19 expression by RAI1 could be controlled via an OsMKK4–OsMAPK3/6 cascade.
===Expression===
* RAI1 is up-regulated by the sphingolipid and chitin elicitors, resulting in the expression of elicitor-responsive genes.

=== Subcellular localization ===
* RAI1 protein was localized in protoplasts.

===Evolution===
* The RAI1 protein has a bHLH domain that is conserved in homologous rice proteins.
* The basic domain at the N-terminus of bHLH is known to be important for binding to DNA elements such as the cis-elements in the promoters of target genes.
* The HLH domain includes two amphipathic a-helices with a linking loop.
* These a-helices may function in the formation of homodimers or heterodimers with other bHLH proteins .

==Labs working on this gene==
* Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan
* Graduate School of Agriculture and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-0032 Japan
* Agricultural and Veterinary Laboratories, Meiji Seika Kaisha, Kohoku-ku, Yokohama, 222-8567 Japan
* Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan

==References==
<references>
<ref name="ref1"> Kim SH, Oikawa T, Kyozuka J, Wong HL, Umemura K, Kishi-Kaboshi M, Takahashi A, Kawano Y, Kawasaki T, Shimamoto K. The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity. Plant Cell Physiol. 2012 Apr;53(4):740-54. doi: 10.1093/pcp/pcs033. Epub 2012 Mar 21. PubMed PMID: 22437844. </ref>
<ref name="ref2">Atchley, W.R., Terhalle, W. and Dress, A. (1999) Positional dependence,cliques, and predictive motifs in the bHLH protein domain. J. Mol.
Evol. 48: 501–516.</ref>
<ref name="ref3">Berken, A. (2006) ROPs in the spotlight of plant signal transduction.Cell. Mol. Life Sci. 63: 2446–2459</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

File:13-Os03g0135700.png

2017-05-07T03:33:02Z

Xysj2027:

Os03g0135700

2017-05-07T03:31:13Z

Xysj2027:

The rice '''''Os03g0135700''''' was reported as '''''RAI1''''' in 2012 by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os03g0135700''''' '''''<=>''''' ''''' OsbHLH003, RAI1'''''
===Function===
* The Rac/Rop GTPase OsRac1 plays an essential role in rice immunity.
* RAI1 encodes a putative basic helix–loop–helix transcription factor.
* RAI1 is involved in defense responses in rice. RAI1 interacted with OsMAPK3 and OsMAPK6 proteins in vivo and in vitro. Also, RAI1 was phosphorylated by OsMAPK3/6 and OsMKK4-dd in vitro.
* RAI1 is the first transcription factor acting downstream of OsRac1.<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />

===Phenotypic analysis===
* Overexpression of OsMAPK6 and/or OsMAPK3 together with OsMKK4-dd increased PAL1 and OsWRKY19 expression in rice protoplasts.
* Therefore, the regulation of PAL1 and OsWRKY19 expression by RAI1 could be controlled via an OsMKK4–OsMAPK3/6 cascade.

===Evolution===
* The RAI1 protein has a bHLH domain that is conserved in homologous rice proteins.
* The basic domain at the N-terminus of bHLH is known to be important for binding to DNA elements such as the cis-elements in the promoters of target genes.
* The HLH domain includes two amphipathic a-helices with a linking loop.
* These a-helices may function in the formation of homodimers or heterodimers with other bHLH proteins .

==Labs working on this gene==
* Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192 Japan
* Graduate School of Agriculture and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-0032 Japan
* Agricultural and Veterinary Laboratories, Meiji Seika Kaisha, Kohoku-ku, Yokohama, 222-8567 Japan
* Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan

==References==
<references>
<ref name="ref1"> Kim SH, Oikawa T, Kyozuka J, Wong HL, Umemura K, Kishi-Kaboshi M, Takahashi A, Kawano Y, Kawasaki T, Shimamoto K. The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity. Plant Cell Physiol. 2012 Apr;53(4):740-54. doi: 10.1093/pcp/pcs033. Epub 2012 Mar 21. PubMed PMID: 22437844. </ref>
<ref name="ref2">Atchley, W.R., Terhalle, W. and Dress, A. (1999) Positional dependence,cliques, and predictive motifs in the bHLH protein domain. J. Mol.
Evol. 48: 501–516.</ref>
<ref name="ref3">Berken, A. (2006) ROPs in the spotlight of plant signal transduction.Cell. Mol. Life Sci. 63: 2446–2459</ref>
</references>

==Structured Information==
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os09g0459200

2017-05-07T03:19:45Z

Xysj2027: /* Annotated Information */

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
[[File:12-Os09g0459200.png|right|thumb|227px|"Figure 1.(from reference<ref name="ref1"/>）."]]
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===

* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

File:12-Os09g0459200.png

2017-05-07T03:19:29Z

Xysj2027:

Os09g0459200

2017-05-07T03:19:15Z

Xysj2027:

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
[[File:12-Os09g0459200.png|right|thumb|327px|"Figure 1.(from reference<ref name="ref1"/>）."]]
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===

* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0459200

2017-05-07T03:17:59Z

Xysj2027: /* Annotated Information */

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
[[File:Expression5.png|right|thumb|327px|"Figure 2. Expression analysis of SG1 using qPCR and SG1::GUS transgenic plants. (from reference<ref name="ref1"/>）."]]
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===

* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0459200

2017-05-07T03:17:48Z

Xysj2027:

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
[[File:Expression5.png|right|thumb|427px|"Figure 2. Expression analysis of SG1 using qPCR and SG1::GUS transgenic plants. (from reference<ref name="ref1"/>）."]]
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===

* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0459200

2017-05-07T03:17:31Z

Xysj2027: /* Function */

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===
[[File:Expression5.png|right|thumb|150px|"Figure 2. Expression analysis of SG1 using qPCR and SG1::GUS transgenic plants. (from reference<ref name="ref1"/>）."]]
* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0459200

2017-05-07T03:17:16Z

Xysj2027:

The rice '''''Os09g0459200''''' was reported as '''''SG1''''' in 2011 by researchers from Japan.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0274800''''' '''''<=>''''' '''''OsSG1, Sg1'''''

===Function===
* SG1, encodes a novel protein that is conserved among angiosperms.
* SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
* SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation<ref name="ref1"/>
[[File:identification.png|right|thumb|327px|"Figure 1. Identification of the rice SG1 gene by activation tagging. (from reference<ref name="ref1"/>）." ]]

===Phenotypic analysis===
* Overexpression of '''''SG1''''' in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.
* However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.

===Expression===
[[File:Expression5.png|right|thumb|150px|"Figure 2. Expression analysis of SG1 using qPCR and SG1::GUS transgenic plants. (from reference<ref name="ref1"/>）."]]
* During vegetative growth,SG1 was preferentially expressed in the roots.
* During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured.
* In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.

===Evolution===
* SG1 does not share significant identity with any proteins of known function.
* However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==

[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

RiceWiki:Curated Genes

2017-05-07T03:09:28Z

Xysj2027:

{|class="wikitable sortable" style="width:90%;text-align:center"
|-
!'''Gene Symbol'''
!'''RAP-DB-ID'''
!'''Total Contribution Score'''
!'''Summed Edit Quantity'''
!'''Averaged Edit Quality'''
!'''Contributor Count'''
!'''Edit Count*'''
!'''Last Edit Time'''
|-
|[[Os09g0114500|'''''BC12''''']]
|[[Os09g0114500]]
| 14.854
| 23746
| 0.626
| 3
| 3
| 2015/6/12 17:37
|-
|[[Os10g0405500|'''''PAIR3''''']]
|[[Os10g0405500]]
| 10.742
| 10877
| 0.988
| 3
| 3
| 2014/6/8 23:39
|-
|[[Os09g0286400|'''''OsNHX5''''']]
|[[Os09g0286400]]
| 12.133
| 24113
| 0.503
| 2
| 2
| 2015/6/12 17:39
|-
|[[Os09g0306400|'''''OsbZIP71''''']]
|[[Os09g0306400]]
| 7.71
| 12551
| 0.614
| 2
| 2
| 2015/6/12 17:39
|-
|[[Os09g0417600|'''''OsWRKY76''''']]
|[[Os09g0417600]]
| 5.713
| 10209
| 0.56
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os09g0434200|'''''OsDSG1''''']]
|[[Os09g0434200]]
| 5.792
| 11879
| 0.488
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os10g0553300|'''''OsTPP2''''']]
|[[Os10g0553300]]
| 8.403
| 35721
| 0.235
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os10g0563600|'''''OsMSRA4.1''''']]
|[[Os10g0563600]]
| 7.778
| 13380
| 0.581
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os11g0127600|'''''ONAC045''''']]
|[[Os11g0127600]]
| 7.065
| 12576
| 0.562
| 3
| 3
| 2015/6/13 17:01
|-
|[[Os11g0648000|'''''OsNHX3''''']]
|[[Os11g0648000]]
| 7.638
| 15767
| 0.484
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os12g0569700|'''''OsHsp23.7''''']]
|[[Os12g0569700]]
| 6.412
| 13859
| 0.463
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os12g0583700|'''''ZFP252''''']]
|[[Os12g0583700]]
| 8.489
| 12862
| 0.66
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os08g0139000|'''''OsDEG10''''']]
|[[Os08g0139000]]
| 4.811
| 9008
| 0.534
| 2
| 2
| 2015/6/12 17:25
|-
|[[Os08g0323700|'''''OsCCC1''''']]
|[[Os08g0323700]]
| 6.709
| 11315
| 0.593
| 2
| 2
| 2015/6/12 17:29
|-
|[[Os08g0441100|'''''OsCIPK06''''']]
|[[Os08g0441100]]
| 3.819
| 7418
| 0.515
| 2
| 2
| 2015/6/12 17:31
|-
|[[Os08g0504700|'''''OsSAP11''''']]
|[[Os08g0504700]]
| 7.149
| 10763
| 0.664
| 2
| 2
| 2015/6/12 17:32
|-
|[[Os08g0540400|'''''OsCPK21''''']]
|[[Os08g0540400]]
| 10.561
| 19732
| 0.535
| 2
| 2
| 2015/6/12 17:34
|-
|[[Os08g0546800|'''''OsHsfB2b''''']]
|[[Os08g0546800]]
| 12.399
| 23039
| 0.538
| 2
| 2
| 2015/6/12 17:34
|-
|[[Os07g0186000|'''''OsTRXh1''''']]
|[[Os07g0186000]]
| 7.817
| 12275
| 0.637
| 2
| 2
| 2015/6/12 16:34
|-
|[[Os07g0556800|'''''OSRIP18''''']]
|[[Os07g0556800]]
| 8.473
| 12924
| 0.656
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os07g0666900|'''''OsNHX1''''']]
|[[Os07g0666900]]
| 11.455
| 21522
| 0.532
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0678600|'''''OsCIPK2''''']]
|[[Os07g0678600]]
| 5.575
| 11240
| 0.496
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0693800|'''''OsFAD8''''']]
|[[Os07g0693800]]
| 5.613
| 11290
| 0.497
| 2
| 2
| 2015/6/12 16:50
|-
|[[Os06g0130100|'''''OsSIK1''''']]
|[[Os06g0130100]]
| 11.48
| 22964
| 0.5
| 2
| 2
| 2015/6/12 16:04
|-
|[[Os06g0472000|'''''OsMSRB1.1''''']]
|[[Os06g0472000]]
| 6.592
| 12098
| 0.545
| 2
| 2
| 2015/6/12 16:14
|-
|[[Os06g0561000|'''''OsMIOX''''']]
|[[Os06g0561000]]
| 6.249
| 12468
| 0.501
| 2
| 2
| 2015/6/12 16:15
|-
|[[Os06g0603600|'''''OsSPX1''''']]
|[[Os06g0603600]]
| 7.774
| 15383
| 0.505
| 2
| 2
| 2015/6/12 16:18
|-
|[[Os06g0612800|'''''OsiSAP8''''']]
|[[Os06g0612800]]
| 8.934
| 14002
| 0.638
| 2
| 2
| 2015/6/12 16:19
|-
|[[Os06g0644200|'''''OVP1''''']]
|[[Os06g0644200]]
| 10.007
| 15443
| 0.648
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os06g0651100|'''''YK1''''']]
|[[Os06g0651100]]
| 8.803
| 18547
| 0.475
| 2
| 2
| 2015/6/12 16:21
|-
|[[Os06g0662200|'''''OsbZIP52''''']]
|[[Os06g0662200]]
| 6.942
| 12388
| 0.56
| 2
| 2
| 2015/6/12 16:22
|-
|[[Os06g0727200|'''''OsCATB''''']]
|[[Os06g0727200]]
| 6.864
| 13184
| 0.521
| 2
| 2
| 2015/6/12 16:27
|-
|[[Os03g0117900|'''''HYR''''']]
|[[Os03g0117900]]
| 5.381
| 8815
| 0.61
| 2
| 2
| 2015/6/12 12:59
|-
|[[Os09g0457900|'''''OsEATB''''']]
|[[Os09g0457900]]
| 42.219
| 42219
| 1
| 1
| 1
| 2014/6/6 14:12
|-
|[[Os06g0208800|'''''LYP6''''']]
|[[Os06g0208800]]
| 35.205
| 40853
| 0.862
| 2
| 2
| 2015/6/12 16:09
|-
|'''''[[GW5]]'''''
|
| 31.812
| 31817
| 1
| 2
| 2
| 2014/6/8 22:47
|-
|[[Os03g0122600|'''''OsMADS50''''']]
|[[Os03g0122600]]
| 31.778
| 36672
| 0.867
| 2
| 2
| 2015/6/12 13:00
|-
|'''''[[Du1]]'''''
|
| 26.789
| 26797
| 1
| 2
| 2
| 2014/6/5 11:51
|-
|[[Os01g0771200|'''''XB24''''']]
|[[Os01g0771200]]
| 25.112
| 106499
| 0.236
| 3
| 14
| 2015/5/13 15:32
|-
|'''''[[IPA1]]'''''
|
| 22.636
| 22636
| 1
| 1
| 1
| 2014/6/1 14:57
|-
|'''''[[AB013448]]'''''
|
| 21.65
| 21650
| 1
| 1
| 1
| 2014/6/8 17:24
|-
|[[Os10g0542100|'''''MT''''']]
|[[Os10g0542100]]
| 21.515
| 25382
| 0.848
| 3
| 3
| 2015/6/13 16:56
|-
|'''''[[MADS]]'''''
|
| 21.305
| 21310
| 1
| 3
| 3
| 2014/6/7 19:11
|-
|'''''[[MYB]]'''''
|
| 21.082
| 21418
| 0.984
| 2
| 2
| 2013/7/16 10:48
|-
|[[Os09g0272900|'''''PB''''']]
|[[Os09g0272900]]
| 21.033
| 24405
| 0.862
| 2
| 2
| 2015/6/12 17:38
|-
|[[Os01g0848400|'''''qSH1''''']]
|[[Os01g0848400]]
| 20.688
| 31733
| 0.652
| 2
| 2
| 2015/5/13 15:40
|-
|[[Os09g0441900|'''''OsDEP1''''']]
|[[Os09g0441900]]
| 18.815
| 18855
| 0.998
| 5
| 5
| 2014/6/11 0:23
|-
|[[Os09g0240200|'''''CONSTANS''''']]
|[[Os09g0240200]]
| 18.077
| 26433
| 0.684
| 2
| 2
| 2015/6/12 17:37
|-
|[[Os04g0271200|'''''SRT701''''']]
|[[Os04g0271200]]
| 18.041
| 18413
| 0.98
| 5
| 9
| 2014/6/10 16:01
|-
|[[Os01g0678500|'''''OsTPC1''''']]
|[[Os01g0678500]]
| 17.989
| 29118
| 0.618
| 6
| 7
| 2015/5/13 15:24
|-
|[[Os03g0332400|'''''OsGLYII-2''''']]
|[[Os03g0332400]]
| 17.603
| 17603
| 1
| 1
| 1
| 2014/12/27 21:46
|-
|[[Os06g0196700|'''''OsARF16'''''']]
|[[Os06g0196700]]
| 17.411
| 28849
| 0.604
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os07g0261200|'''''Ghd7''''']]
|[[Os07g0261200]]
| 17.077
| 17414
| 0.981
| 2
| 2
| 2014/6/1 17:56
|-
|'''''[[Xa7]]'''''
|
| 16.58
| 16580
| 1
| 1
| 1
| 2014/5/30 14:34
|-
|[[Os03g0227700|'''''OsDWARF4''''']]
|[[Os03g0227700]]
| 16.238
| 28577
| 0.568
| 4
| 6
| 2015/6/12 13:36
|-
|'''''[[Pb1]]'''''
|
| 15.987
| 15987
| 1
| 1
| 1
| 2014/6/3 15:06
|-
|[[Os12g0597000|'''''CBL''''']]
|[[Os12g0597000]]
| 15.897
| 25737
| 0.618
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os01g0841500|'''''OsMYB3R2''''']]
|[[Os01g0841500]]
| 15.635
| 27885
| 0.561
| 3
| 4
| 2015/5/13 15:39
|-
|[[Os01g0182600|'''''GI''''']]
|[[Os01g0182600]]
| 14.75
| 22705
| 0.65
| 2
| 2
| 2015/5/13 14:58
|-
|[[Os08g0162100|'''''ASP1''''']]
|[[Os08g0162100]]
| 14.743
| 14743
| 1
| 1
| 1
| 2015/6/12 17:26
|-
|[[Os02g0738900|'''''OsDRP2B''''']]
|[[Os02g0738900]]
| 14.365
| 21439
| 0.67
| 2
| 2
| 2015/5/14 13:58
|-
|[[Os01g57340|'''''Npi37''''']]
|[[Os01g57340]]
| 14.08
| 14080
| 1
| 1
| 1
| 2014/5/27 20:22
|-
|[[Os01g0718300|'''''OsBRI1''''']]
|[[Os01g0718300]]
| 14.008
| 25923
| 0.54
| 3
| 3
| 2015/5/13 15:26
|-
|'''''[[Du2]]'''''
|
| 13.964
| 13964
| 1
| 2
| 2
| 2014/6/5 11:53
|-
|'''''[[OsMYB103L]]'''''
|
| 13.96
| 13960
| 1
| 1
| 1
| 2014/6/11 16:14
|-
|[[Os01g0782100|''''' Pi-sh''''']]
|[[Os01g0782100]]
| 13.897
| 27151
| 0.512
| 3
| 3
| 2015/5/13 15:34

|-
|[[Os06g0706400|'''''OsPTR9''''']]
|[[Os06g0706400]]
| 13.739
| 20020
| 0.686
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os08g0398400|'''''OsHIR1''''']]
|[[Os08g0398400]]
| 13.721
| 13748
| 0.998
| 3
| 6
| 2014/6/3 16:40
|-
|[[Os02g0141300|'''''CAP1''''']]
|[[Os02g0141300]]
| 13.71
| 28137
| 0.487
| 5
| 10
| 2015/5/14 13:21
|-
|[[Os07g0214100|'''''RAG1''''']]
|[[Os07g0214100]]
| 13.62
| 31302
| 0.435
| 2
| 2
| 2015/6/12 16:36
|-
|'''''[[DWT1]]'''''
|
| 13.275
| 13275
| 1
| 1
| 1
| 2014/5/31 12:55
|-
|[[Os01g0797600|'''''OsERF3''''']]
|[[Os01g0797600]]
| 13.247
| 13247
| 1
| 1
| 1
| 2014/5/25 15:17
|-
|[[Os01g0883800|'''''semidwarf-1''''']]
|[[Os01g0883800]]
| 13.17
| 24896
| 0.529
| 16
| 41
| 2016/6/17 17:22
|-
|[[Os08g0524100|'''''OsSRT1''''']]
|[[Os08g0524100]]
| 13.001
| 18711
| 0.695
| 2
| 2
| 2015/6/12 17:33
|-
|[[Os08g0559300|'''''SPINDLY''''']]
|[[Os08g0559300]]
| 12.718
| 21018
| 0.605
| 3
| 6
| 2015/6/12 17:35
|-
|[[Os11g0225300|'''''PAMP''''']]
|[[Os11g0225300]]
| 12.691
| 23520
| 0.54
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os07g0155600|'''''OsEIN2''''']]
|[[Os07g0155600]]
| 12.605
| 18316
| 0.688
| 2
| 2
| 2015/6/12 16:33
|-
|[[Os01g0607200|'''''OsBAT1''''']]
|[[Os01g0607200]]
| 12.553
| 19986
| 0.628
| 2
| 2
| 2015/5/13 15:17
|-
|[[Os07g0616800|'''''SUS''''']]
|[[Os07g0616800]]
| 12.42
| 26693
| 0.465
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os12g0102400|'''''OsRINGC2-2''''']]
|[[Os12g0102400]]
| 12.278
| 17739
| 0.692
| 3
| 3
| 2015/6/13 17:13
|-
|'''''[[WRKY]]'''''
|
| 12.226
| 12233
| 0.999
| 2
| 2
| 2014/5/31 12:44
|-
|[[Os10g0536100|'''''OsMADS50''''']]
|[[Os10g0536100]]
| 11.96
| 19080
| 0.627
| 3
| 3
| 2015/6/13 16:52
|-
|[[Os02g0725900|'''''HAP3''''']]
|[[Os02g0725900]]
| 11.931
| 16469
| 0.724
| 2
| 2
| 2015/5/14 13:55
|-
|[[Os01g0626400|'''''OsWRKY11''''']]
|[[Os01g0626400]]
| 11.902
| 18881
| 0.63
| 2
| 2
| 2015/5/13 15:20
|-
|[[Os01g0726400|'''''CFO1''''']]
|[[Os01g0726400]]
| 11.891
| 17625
| 0.675
| 2
| 2
| 2015/5/13 15:27
|-
|[[Os09g0422500|'''''OsCESA9''''']]
|[[Os09g0422500]]
| 11.747
| 23511
| 0.5
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os09g0250700|'''''OsABC1-12''''']]
|[[Os09g0250700]]
| 11.742
| 15681
| 0.749
| 2
| 2
| 2015/6/12 17:38
|-
|[[Os06g0701300|'''''OsABC1-8''''']]
|[[Os06g0701300]]
| 11.604
| 15691
| 0.74
| 2
| 2
| 2015/6/12 16:24
|-
|[[Os02g0126400|'''''OsCPK4''''']]
|[[Os02g0126400]]
| 11.6
| 22962
| 0.505
| 2
| 2
| 2015/5/14 13:20
|-
|[[Os06g0570100|'''''d35 Tan-Ginbozu''''']]
|[[Os06g0570100]]
| 11.586
| 15710
| 0.737
| 3
| 3
| 2015/6/12 16:16
|-
|[[Os03g0793500|'''''Hd16''''']]
|[[Os03g0793500]]
| 11.531
| 15843
| 0.728
| 2
| 2
| 2015/5/15 13:43
|-
|[[Os01g0536000|'''''OsCIPK08''''']]
|[[Os01g0536000]]
| 11.52
| 15150
| 0.76
| 2
| 2
| 2015/5/13 15:15
|-
|[[Os03g0848700|'''''Bph14''''']]
|[[Os03g0848700]]
| 11.486
| 21573
| 0.532
| 4
| 4
| 2015/5/15 13:41
|-
|[[Os01g0907900|'''''PLA2''''']]
|[[Os01g0907900]]
| 11.483
| 11485
| 1
| 2
| 2
| 2014/6/2 17:56
|-
|[[Os07g0459200|'''''OsABC1-10''''']]
|[[Os07g0459200]]
| 11.449
| 15381
| 0.744
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os07g0102300|'''''SRL1''''']]
|[[Os07g0102300]]
| 11.423
| 22326
| 0.512
| 3
| 3
| 2015/6/12 16:30
|-
|[[Os07g0186200|'''''OsSIK2''''']]
|[[Os07g0186200]]
| 11.413
| 20165
| 0.566
| 3
| 3
| 2015/6/12 16:34
|-
|[[Os03g0226800|'''''CMT3''''']]
|[[Os03g0226800]]
| 11.245
| 21415
| 0.525
| 3
| 3
| 2015/6/12 13:36
|-
|[[Os08g0114200|'''''OsGLU3''''']]
|[[Os08g0114200]]
| 11.137
| 17754
| 0.627
| 2
| 2
| 2015/6/12 17:23
|-
|[[Os07g0596300|'''''FH5''''']]
|[[Os07g0596300]]
| 11.085
| 15490
| 0.716
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os02g0178800|'''''OsGL1-2''''']]
|[[Os02g0178800]]
| 11.079
| 14720
| 0.753
| 2
| 2
| 2015/5/14 13:23
|-
|[[Os03g0811100|''''' Chl1''''']]
|[[Os03g0811100]]
| 11.068
| 14957
| 0.74
| 2
| 2
| 2015/5/15 13:42
|-
|[[Os09g0395300|'''''SLL1''''']]
|[[Os09g0395300]]
| 11.063
| 16461
| 0.672
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os03g03150|'''''TAD1''''']]
|[[Os03g03150]]
| 10.972
| 10972
| 1
| 1
| 1
| 2014/6/9 12:35
|-
|[[Os12g0189500|'''''OsYUC11''''']]
|[[Os12g0189500]]
| 10.931
| 20645
| 0.529
| 7
| 7
| 2015/6/13 17:16
|-
|[[Os06g0211200|'''''OsAREB1''''']]
|[[Os06g0211200]]
| 10.925
| 19995
| 0.546
| 5
| 6
| 2015/6/12 16:09
|-
|[[Os02g0100200|'''''HSP''''']]
|[[Os02g0100200]]
| 10.917
| 21797
| 0.501
| 2
| 2
| 2015/5/14 13:17
|-
|'''''[[BHLH]]'''''
|
| 10.829
| 10829
| 1
| 1
| 1
| 2013/7/21 20:47
|-
|[[Os11g0703900|'''''Hsp70''''']]
|[[Os11g0703900]]
| 10.813
| 10898
| 0.992
| 4
| 5
| 2014/6/9 23:54
|-
|[[Os01g44260|'''''OsDfr''''']]
|[[Os01g44260]]
| 10.787
| 10787
| 1
| 1
| 1
| 2014/6/9 21:48
|-
|[[Os03g0815100|'''''SNAC1''''']]
|[[Os03g0815100]]
| 10.722
| 15783
| 0.679
| 2
| 2
| 2015/5/15 13:42
|-
|[[Os10g0561400|'''''OsMYBS3''''']]
|[[Os10g0561400]]
| 10.656
| 22236
| 0.479
| 3
| 3
| 2015/6/13 16:57
|-
|[[Os11g0523800|'''''OsARF1''''']]
|[[Os11g0523800]]
| 10.633
| 21943
| 0.485
| 6
| 6
| 2015/6/13 17:08
|-
|[[Os07g0257200|'''''OsNRAMP5''''']]
|[[Os07g0257200]]
| 10.556
| 10556
| 1
| 1
| 1
| 2015/6/12 16:38
|-
|[[Os02g0661100|'''''OsTPP1''''']]
|[[Os02g0661100]]
| 10.544
| 18837
| 0.56
| 2
| 2
| 2015/5/14 13:51
|-
|[[Os07g0164000|'''''WAF1''''']]
|[[Os07g0164000]]
| 10.534
| 11864
| 0.888
| 2
| 2
| 2015/6/12 16:33
|-
|[[Os12g0476200|'''''Xa25''''']]
|[[Os12g0476200]]
| 10.44
| 17073
| 0.611
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os10g0497300|'''''Rf1a''''']]
|[[Os10g0497300]]
| 10.431
| 18232
| 0.572
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os07g0108900|'''''OsMADS15''''']]
|[[Os07g0108900]]
| 10.425
| 20545
| 0.507
| 4
| 5
| 2015/6/12 16:31
|-
|[[Os03g0215400|'''''MADS1''''']]
|[[Os03g0215400]]
| 10.412
| 14715
| 0.708
| 2
| 2
| 2015/6/12 13:34
|-
|[[Os08g0174700|'''''OsSERK1''''']]
|[[Os08g0174700]]
| 10.335
| 21519
| 0.48
| 2
| 2
| 2015/6/12 17:28
|-
|[[Os01g0121700|'''''OsWBC1''''']]
|[[Os01g0121700]]
| 10.278
| 14300
| 0.719
| 2
| 2
| 2015/5/13 14:49
|-
|[[Os01g0201700|'''''OsMADS3''''']]
|[[Os01g0201700]]
| 10.276
| 20440
| 0.503
| 2
| 2
| 2015/5/13 15:03
|-
|[[Os10g0577600|'''''JMJ706''''']]
|[[Os10g0577600]]
| 10.16
| 18081
| 0.562
| 3
| 3
| 2015/6/13 16:59
|-
|[[Os01g0839100|'''''ZFP179''''']]
|[[Os01g0839100]]
| 10.128
| 13298
| 0.762
| 2
| 2
| 2015/5/13 15:38
|-
|[[Os03g0237250|'''''LPA1''''']]
|[[Os03g0237250]]
| 10.125
| 14184
| 0.714
| 2
| 2
| 2015/6/12 13:38
|-
|[[Os06g0133000|'''''Waxy''''']]
|[[Os06g0133000]]
| 10.084
| 22204
| 0.454
| 3
| 3
| 2015/6/12 16:04
|-
|[[Os03g0805100|'''''SQS''']]
|[[Os03g0805100]]
| 10.051
| 13542
| 0.742
| 2
| 2
| 2015/5/15 13:42
|-
|'''''[[AB013449]]'''''
|
| 10.03
| 10030
| 1
| 1
| 1
| 2014/6/10 22:14
|-
|[[Os07g0605200|'''''OsMADS18''''']]
|[[Os07g0605200]]
| 10.027
| 19041
| 0.527
| 2
| 2
| 2015/6/12 16:47
|-
|[[Os06g0194900|'''''Sus''''']]
|[[Os06g0194900]]
| 10.026
| 20580
| 0.487
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os01g0764800|'''''GH3''''']]
|[[Os01g0764800]]
| 10.024
| 18674
| 0.537
| 2
| 2
| 2015/5/13 15:32
|-
|[[Os03g0111300|'''''NsLTPs''''']]
|[[Os03g0111300]]
| 10.013
| 12909
| 0.776
| 4
| 4
| 2015/6/12 12:57
|-
|[[Os10g0127900|'''''OsFbx352''''']]
|[[Os10g0127900]]
| 10.013
| 20618
| 0.486
| 4
| 8
| 2015/6/13 16:43
|-
|[[Os06g0662000|'''''OsVHA-A''''']]
|[[Os06g0662000]]
| 9.949
| 19796
| 0.503
| 2
| 2
| 2015/6/12 16:21
|-
|[[Os06g0254600|'''''CALEOSIN''''']]
|[[Os06g0254600]]
| 9.94
| 12129
| 0.82
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os06g0603000|'''''SE5''''']]
|[[Os06g0603000]]
| 9.889
| 9889
| 1
| 1
| 1
| 2014/6/9 17:03
|-
|[[Os08g0535200|'''''xa13''''']]
|[[Os08g0535200]]
| 9.858
| 18774
| 0.525
| 3
| 3
| 2015/6/12 17:34
|-
|[[Os12g0281300|'''''Pi-ta''''']]
|[[Os12g0281300]]
| 9.857
| 21855
| 0.451
| 4
| 4
| 2015/6/13 17:16
|-
|[[Os01g0919400|'''''SPS''''']]
|[[Os01g0919400]]
| 9.837
| 9837
| 1
| 1
| 1
| 2016/6/6 17:48
|-
|[[Os10g0573900|'''''OsNMD3''''']]
|[[Os10g0573900]]
| 9.818
| 16399
| 0.599
| 3
| 3
| 2015/6/13 16:59
|-
|[[Os01g0197100|'''''dwarf2''''']]
|[[Os01g0197100]]
| 9.81
| 19279
| 0.509
| 5
| 6
| 2015/5/13 14:59
|-
|[[Os11g0216300|'''''OsABC1-13''''']]
|[[Os11g0216300]]
| 9.795
| 13761
| 0.712
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os01g0102900|'''''Os-LIR1''''']]
|[[Os01g0102900]]
| 9.726
| 9726
| 1
| 1
| 1
| 2016/6/12 14:04
|-
|[[Os11g0249000|'''''NLS1''''']]
|[[Os11g0249000]]
| 9.718
| 17393
| 0.559
| 3
| 3
| 2015/6/13 17:05
|-
|[[Os10g0467800|'''''OsCesA7''''']]
|[[Os10g0467800]]
| 9.68
| 22133
| 0.437
| 5
| 6
| 2015/6/13 16:48
|-
|[[Os02g0682200|'''''MADS6''''']]
|[[Os02g0682200]]
| 9.577
| 17192
| 0.557
| 3
| 13
| 2015/5/14 13:53
|-
|[[Os06g0569500|'''''GAs''''']]
|[[Os06g0569500]]
| 9.526
| 18834
| 0.506
| 2
| 2
| 2015/6/12 16:15
|-
|[[Os09g0456800|'''''OsHsfs''''']]
|[[Os09g0456800]]
| 9.468
| 13735
| 0.689
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os02g0274900|'''''OsGMST1''''']]
|[[Os02g0274900]]
| 9.449
| 18241
| 0.518
| 2
| 2
| 2015/5/14 13:38
|-
|[[Os06g0724900|'''''ILA1''''']]
|[[Os06g0724900]]
| 9.361
| 19950
| 0.469
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os01g0611100|'''''OsRAN1''''']]
|[[Os01g0611100]]
| 9.349
| 15330
| 0.61
| 2
| 2
| 2015/5/13 15:18
|-
|[[Os08g0509600|'''''OsSPL14''''']]
|[[Os08g0509600]]
| 9.346
| 17625
| 0.53
| 3
| 4
| 2015/6/12 17:32
|-
|[[Os07g0558000|'''''OsABC1-11''''']]
|[[Os07g0558000]]
| 9.337
| 13289
| 0.703
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os09g0449000|'''''PTC1''''']]
|[[Os09g0449000]]
| 9.33
| 16966
| 0.55
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os04g0415000|'''''BY240''''']]
|[[Os04g0415000]]
| 9.31
| 9310
| 1
| 1
| 1
| 2014/6/6 19:55
|-
|[[Os07g0471000|'''''OsIRE1''''']]
|[[Os07g0471000]]
| 9.278
| 18586
| 0.499
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os03g0170900|'''''OsSUT1''''']]
|[[Os03g0170900]]
| 9.272
| 19337
| 0.479
| 2
| 2
| 2015/6/12 13:04
|-
|[[Os06g0610300|'''''MOC1''''']]
|[[Os06g0610300]]
| 9.171
| 11979
| 0.766
| 2
| 2
| 2015/6/12 16:19
|-
|[[Os06g0583400|'''''OsHDAC702''''']]
|[[Os06g0583400]]
| 9.15
| 11481
| 0.797
| 2
| 2
| 2015/6/12 16:16
|-
|[[Os02g0622100|'''''LTG1''''']]
|[[Os02g0622100]]
| 9.147
| 12303
| 0.743
| 2
| 2
| 2015/5/14 13:47
|-
|[[Os03g0203200|'''''HTD2''''']]
|[[Os03g0203200]]
| 9.128
| 17233
| 0.53
| 4
| 4
| 2015/6/12 13:06
|-
|[[Os06g0660200|'''''OsPIN2''''']]
|[[Os06g0660200]]
| 9.119
| 20530
| 0.444
| 5
| 6
| 2015/6/12 16:21
|-
|[[Os10g0403000|'''''PLA1 ''''']]
|[[Os10g0403000]]
| 9.104
| 15463
| 0.589
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os03g0112700|'''''Ehd4''''']]
|[[Os03g0112700]]
| 9.094
| 17122
| 0.531
| 3
| 3
| 2015/6/12 12:58
|-
|[[Os02g0799100|'''''Ossgo1''''']]
|[[Os02g0799100]]
| 9.068
| 16095
| 0.563
| 3
| 6
| 2015/5/14 14:02
|-
|[[Os09g0307800|'''''SDG724''''']]
|[[Os09g0307800]]
| 9.029
| 11279
| 0.801
| 4
| 15
| 2014/6/6 8:56
|-
|[[Os08g0424500|'''''Badh2''''']]
|[[Os08g0424500]]
| 9.021
| 17768
| 0.508
| 3
| 3
| 2015/6/12 17:30
|-
|[[Os11g0184900|'''''OsNAC5''''']]
|[[Os11g0184900]]
| 9.016
| 15182
| 0.594
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os02g0203700|'''''SRZ1''''']]
|[[Os02g0203700]]
| 9.003
| 12324
| 0.731
| 2
| 2
| 2015/5/14 13:26
|-
|[[Os06g0125000|'''''RPM1''''']]
|[[Os06g0125000]]
| 8.97
| 12695
| 0.707
| 2
| 2
| 2015/6/12 16:02
|-
|[[Os03g0128700|'''''OsCDPK13''''']]
|[[Os03g0128700]]
| 8.928
| 17882
| 0.499
| 2
| 2
| 2015/6/12 13:01
|-
|[[Os03g0215200|'''''DL''''']]
|[[Os03g0215200]]
| 8.927
| 14196
| 0.629
| 3
| 3
| 2015/6/12 13:07
|-
|[[Os01g0952800|'''''OsIRO2''''']]
|[[Os01g0952800]]
| 8.922
| 8922
| 1
| 1
| 1
| 2014/6/10 21:52
|-
|[[Os06g0494100|'''''Pi-d2''''']]
|[[Os06g0494100]]
| 8.906
| 12742
| 0.699
| 3
| 3
| 2015/6/12 16:14
|-
|[[Os03g0149100|'''''OsCrl1''''']]
|[[Os03g0149100]]
| 8.897
| 13456
| 0.661
| 3
| 4
| 2015/6/12 11:15
|-
|'''''[[BZIP]]'''''
|
| 8.894
| 8924
| 0.997
| 2
| 2
| 2013/7/21 21:01
|-
|[[Os06g0625900|'''''OsHAK10''''']]
|[[Os06g0625900]]
| 8.872
| 13033
| 0.681
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os06g0229800|'''''ALK''''']]
|[[Os06g0229800]]
| 8.835
| 16807
| 0.526
| 2
| 2
| 2015/6/12 16:11
|-
|[[Os07g0232900|'''''OsHMA3''''']]
|[[Os07g0232900]]
| 8.79
| 18004
| 0.488
| 3
| 8
| 2015/6/12 16:37
|-
|[[Os07g0129700|'''''OSH15''''']]
|[[Os07g0129700]]
| 8.789
| 18504
| 0.475
| 3
| 3
| 2015/6/12 16:32
|-
|[[Os12g0641400|'''''OsSUT2''''']]
|[[Os12g0641400]]
| 8.735
| 8735
| 1
| 1
| 1
| 2016/6/12 13:56
|-
|[[Os08g0137100|'''''OsFIE2''''']]
|[[Os08g0137100]]
| 8.717
| 8717
| 1
| 1
| 1
| 2015/6/12 17:25
|-
|'''''[[Htd1]]'''''
|
| 8.705
| 8705
| 1
| 1
| 1
| 2014/6/10 14:14
|-
|[[Os03g0707600|'''''GAI''''']]
|[[Os03g0707600]]
| 8.666
| 16659
| 0.52
| 2
| 5
| 2014/5/28 0:43
|-
|'''''[[Xa23]]'''''
|
| 8.641
| 8641
| 1
| 1
| 1
| 2014/5/31 21:49
|-
|[[Os11g0235200|'''''SP1''''']]
|[[Os11g0235200]]
| 8.563
| 17156
| 0.499
| 3
| 3
| 2015/6/13 17:05
|-
|[[Os07g0100600|'''''OsPTR1''''']]
|[[Os07g0100600]]
| 8.559
| 15027
| 0.57
| 2
| 2
| 2015/6/12 16:30
|-
|[[Os06g0597000|'''''OsIAA23''''']]
|[[Os06g0597000]]
| 8.509
| 16209
| 0.525
| 4
| 11
| 2014/5/19 22:42
|-
|[[Os02g0232100|'''''HEI10''''']]
|[[Os02g0232100]]
| 8.485
| 15567
| 0.545
| 2
| 2
| 2015/5/14 13:36
|-
|[[Os04g0452500|'''''ZEP1''''']]
|[[Os04g0452500]]
| 8.484
| 8484
| 1
| 1
| 1
| 2014/5/31 16:56
|-
|[[Os09g0363900|'''''ONI3''''']]
|[[Os09g0363900]]
| 8.473
| 12412
| 0.683
| 3
| 3
| 2015/6/12 17:40
|-
|[[Os09g0426800|'''''WSL2''''']]
|[[Os09g0426800]]
| 8.447
| 9634
| 0.877
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os01g0253300|'''''alpha-1a''''']]
|[[Os01g0253300]]
| 8.439
| 17745
| 0.476
| 5
| 5
| 2015/5/13 15:07
|-
|[[Os06g0683400|'''''OsCCD1''''']]
|[[Os06g0683400]]
| 8.438
| 8438
| 1
| 1
| 1
| 2016/6/12 14:00
|-
|[[Os09g0522000|'''''OsDREB''''']]
|[[Os09g0522000]]
| 8.335
| 8335
| 1
| 1
| 1
| 2014/5/24 21:12
|-
|[[Os02g0580300|'''''GID2''''']]
|[[Os02g0580300]]
| 8.329
| 15752
| 0.529
| 2
| 2
| 2015/5/14 13:44
|-
|[[Os08g0499300|'''''OsWRKY30''''']]
|[[Os08g0499300]]
| 8.324
| 17032
| 0.489
| 2
| 2
| 2015/6/12 17:32
|-
|[[Os08g0445700|'''''TPS''''']]
|[[Os08g0445700]]
| 8.317
| 10922
| 0.761
| 2
| 2
| 2015/6/12 17:31
|-
|[[Os10g0505700|'''''LTPs''''']]
|[[Os10g0505700]]
| 8.312
| 16220
| 0.512
| 5
| 6
| 2015/6/13 16:46
|-
|[[Os11g0559200|'''''OsXa21''''']]
|[[Os11g0559200]]
| 8.294
| 15586
| 0.532
| 6
| 9
| 2015/6/13 17:08
|-
|[[Os03g0179400|'''''GUDK''''']]
|[[Os03g0179400]]
| 8.292
| 14840
| 0.559
| 2
| 2
| 2015/6/12 13:04
|-
|[[Os02g0553200|'''''OsAPx8''''']]
|[[Os02g0553200]]
| 8.204
| 8204
| 1
| 1
| 1
| 2014/6/8 16:03
|-
|[[Os01g0571300|'''''OsHsfA7''''']]
|[[Os01g0571300]]
| 8.184
| 14946
| 0.548
| 2
| 2
| 2015/5/13 15:16
|-
|[[Os09g0401100|'''''STR1''''']]
|[[Os09g0401100]]
| 8.183
| 17216
| 0.475
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os02g0181300|'''''WRKY''''']]
|[[Os02g0181300]]
| 8.174
| 13252
| 0.617
| 2
| 2
| 2015/5/14 13:24
|-
|[[Os05g0346200|'''''OsDREB2B2''''']]
|[[Os05g0346200]]
| 8.14
| 8233
| 0.989
| 2
| 3
| 2014/6/5 17:14
|-
|[[Os09g0502100|'''''LGD1''''']]
|[[Os09g0502100]]
| 8.139
| 15501
| 0.525
| 2
| 2
| 2015/6/12 22:35
|-
|[[Os03g0820300|'''''ZFP182''''']]
|[[Os03g0820300]]
| 8.137
| 11604
| 0.701
| 2
| 2
| 2015/5/15 13:41
|-
|[[Os03g0230300|'''''OsSRO1c''''']]
|[[Os03g0230300]]
| 8.029
| 15193
| 0.528
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os07g0438800|'''''OsPHR2''''']]
|[[Os07g0438800]]
| 8.026
| 15610
| 0.514
| 2
| 2
| 2015/6/12 16:39
|-
|[[Os02g0534400|'''''OsCIN1''''']]
|[[Os02g0534400]]
| 7.997
| 16635
| 0.481
| 2
| 2
| 2015/5/14 13:41
|-
|[[Os06g0165600|'''''OsDREB1D''''']]
|[[Os06g0165600]]
| 7.982
| 11937
| 0.669
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os11g0490600|'''''LAZY1''''']]
|[[Os11g0490600]]
| 7.98
| 16603
| 0.481
| 4
| 5
| 2015/6/13 17:07
|-
|[[Os07g0585700|'''''Sdr4''''']]
|[[Os07g0585700]]
| 7.966
| 7966
| 1
| 1
| 1
| 2014/6/9 23:14
|-
|[[Os01g0194300|'''''OsNPR1''''']]
|[[Os01g0194300]]
| 7.966
| 11111
| 0.717
| 2
| 2
| 2015/5/13 14:59
|-
|[[Os01g0869900|'''''SNF1''''']]
|[[Os01g0869900]]
| 7.964
| 16289
| 0.489
| 2
| 2
| 2015/5/13 15:42
|-
|[[Os06g0160700|'''''SSSl''''']]
|[[Os06g0160700]]
| 7.962
| 15027
| 0.53
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os09g0451500|'''''PDI''''']]
|[[Os09g0451500]]
| 7.903
| 10040
| 0.787
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os01g0759400|'''''OsCIPK12''''']]
|[[Os01g0759400]]
| 7.902
| 15742
| 0.502
| 2
| 2
| 2015/5/13 15:30
|-
|[[Os06g0205100|'''''OsC1-Myb''''']]
|[[Os06g0205100]]
| 7.891
| 12914
| 0.611
| 2
| 2
| 2015/6/12 16:08
|-
|[[Os09g0244900|'''''Ypt1p''''']]
|[[Os09g0244900]]
| 7.89
| 11371
| 0.694
| 2
| 2
| 2015/6/12 17:38
|-
|'''''[[HTD2]]'''''
|
| 7.887
| 7887
| 1
| 1
| 1
| 2014/6/4 22:20
|-
|[[Os09g0482400|'''''HSP82''''']]
|[[Os09g0482400]]
| 7.873
| 11843
| 0.665
| 2
| 2
| 2015/6/12 17:47
|-
|[[Os10g0478000|'''''TAW1''''']]
|[[Os10g0478000]]
| 7.871
| 12275
| 0.641
| 4
| 5
| 2015/6/13 16:47
|-
|[[Os07g0258400|'''''OsNRAMP1''''']]
|[[Os07g0258400]]
| 7.866
| 13708
| 0.574
| 2
| 2
| 2015/6/12 16:38
|-
|[[Os10g0445400|'''''OsHCI1''''']]
|[[Os10g0445400]]
| 7.848
| 15652
| 0.501
| 6
| 15
| 2015/6/13 16:48
|-
|[[Os01g0273800|'''''OsYUC9''''']]
|[[Os01g0273800]]
| 7.843
| 9988
| 0.785
| 2
| 2
| 2015/5/13 15:10
|-
|[[Os01g0643300|'''''OsPIN10a''''']]
|[[Os01g0643300]]
| 7.839
| 16276
| 0.482
| 3
| 3
| 2015/5/13 15:22
|-
|[[Os06g0286700|'''''Pi9''''']]
|[[Os06g0286700]]
| 7.816
| 16653
| 0.469
| 6
| 9
| 2015/6/12 16:13
|-
|[[Os11g0104300|'''''DWARF53''''']]
|[[Os11g0104300]]
| 7.791
| 11682
| 0.667
| 4
| 4
| 2015/6/13 17:00
|-
|[[Os07g0150700|'''''Os-AKT1''''']]
|[[Os07g0150700]]
| 7.79
| 15994
| 0.487
| 2
| 2
| 2015/6/12 16:32
|-
|[[Os09g0494200|'''''BC15''''']]
|[[Os09g0494200]]
| 7.776
| 7776
| 1
| 1
| 1
| 2014/6/3 23:51
|-
|[[Os03g0181500|'''''ONI1''''']]
|[[Os03g0181500]]
| 7.751
| 12230
| 0.634
| 3
| 4
| 2015/6/12 13:05
|-
|[[Os02g0814200|'''''OsGL1-6''''']]
|[[Os02g0814200]]
| 7.743
| 13379
| 0.579
| 2
| 2
| 2015/5/14 14:03
|-
|[[Os02g0103800|'''''OsLFNR1''''']]
|[[Os02g0103800]]
| 7.686
| 7686
| 1
| 1
| 1
| 2016/6/12 14:12
|-
|[[Os11g0225100|'''''Pia''''']]
|[[Os11g0225100]]
| 7.669
| 12296
| 0.624
| 3
| 3
| 2015/6/13 17:04
|-
|'''''[[Pi1]]'''''
|
| 7.644
| 7644
| 1
| 1
| 1
| 2014/6/5 17:02
|-
|[[Os01g0307500|'''''SKC1''''']]
|[[Os01g0307500]]
| 7.639
| 7639
| 1
| 1
| 1
| 2014/6/7 21:57
|-
|'''''[[Chalk5]]'''''
|
| 7.635
| 7635
| 1
| 1
| 1
| 2014/5/29 11:10
|-
|[[Os08g0140300|'''''TDC''''']]
|[[Os08g0140300]]
| 7.633
| 13769
| 0.554
| 2
| 2
| 2015/6/12 17:26
|-
|[[Os07g0622900|'''''DTM1''''']]
|[[Os07g0622900]]
| 7.632
| 14288
| 0.534
| 2
| 2
| 2015/6/12 16:48
|-
|[[Os01g0292200|'''''OsCIPK1''''']]
|[[Os01g0292200]]
| 7.626
| 12859
| 0.593
| 2
| 2
| 2015/5/13 15:11
|-
|[[Os03g0230500|'''''DSM3''''']]
|[[Os03g0230500]]
| 7.618
| 14126
| 0.539
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os12g0472500|'''''OsTDL1A''''']]
|[[Os12g0472500]]
| 7.581
| 13819
| 0.549
| 4
| 4
| 2015/6/13 17:17
|-
|[[Os03g0262900|'''''glup6''''']]
|[[Os03g0262900]]
| 7.571
| 15719
| 0.482
| 2
| 2
| 2015/6/12 13:38
|-
|[[Os06g0107700|'''''OsLFNR2''''']]
|[[Os06g0107700]]
| 7.533
| 7533
| 1
| 1
| 1
| 2016/6/6 9:33
|-
|[[Os02g57310|'''''Pib''''']]
|[[Os02g57310]]
| 7.531
| 7531
| 1
| 1
| 1
| 2014/6/6 14:27
|-
|[[Os09g0104200|'''''OsRAD51D''''']]
|[[Os09g0104200]]
| 7.502
| 15399
| 0.487
| 3
| 3
| 2015/6/12 17:37
|-
|[[Os06g0142600|'''''Hd17''''']]
|[[Os06g0142600]]
| 7.492
| 11545
| 0.649
| 3
| 3
| 2015/6/12 16:06
|-
|[[Os03g0788500|'''''OsCPK10''''']]
|[[Os03g0788500]]
| 7.454
| 10159
| 0.734
| 2
| 2
| 2015/5/15 13:44
|-
|[[Os06g0139000|'''''F-box''''']]
|[[Os06g0139000]]
| 7.443
| 15282
| 0.487
| 3
| 4
| 2015/6/12 16:05
|-
|[[Os03g0168600|'''''CYP704B2''''']]
|[[Os03g0168600]]
| 7.43
| 12348
| 0.602
| 2
| 2
| 2015/6/12 13:03
|-
|[[Os11g0117400|'''''OsWRKY89''''']]
|[[Os11g0117400]]
| 7.353
| 11607
| 0.633
| 3
| 3
| 2015/6/13 17:01
|-
|[[Os03g0223400|'''''OsGLN1_2''''']]
|[[Os03g0223400]]
| 7.313
| 14417
| 0.507
| 3
| 3
| 2015/6/12 13:35
|-
|[[Os02g0731200|'''''MADS57''''']]
|[[Os02g0731200]]
| 7.311
| 14927
| 0.49
| 2
| 2
| 2015/5/14 13:56
|-
|[[Os09g02650|'''''BC12''''']]
|[[Os09g02650]]
| 7.302
| 7302
| 1
| 1
| 1
| 2014/6/1 19:01
|-
|[[Os01g0859300|'''''OsABI5''''']]
|[[Os01g0859300]]
| 7.265
| 12246
| 0.593
| 2
| 2
| 2015/5/13 15:41
|-
|[[Os08g0105000|'''''Ghd7''''']]
|[[Os08g0105000]]
| 7.237
| 15311
| 0.473
| 4
| 4
| 2015/6/12 17:23
|-
|[[Os03g0110800|'''''OsDRM2''''']]
|[[Os03g0110800]]
| 7.203
| 14838
| 0.485
| 2
| 2
| 2015/6/12 12:57
|-
|[[Os01g0367100|'''''PHD1''''']]
|[[Os01g0367100]]
| 7.2
| 12561
| 0.573
| 3
| 3
| 2015/6/9 9:53
|-
|[[Os02g0191600|'''''OsbZIP16''''']]
|[[Os02g0191600]]
| 7.2
| 13785
| 0.522
| 2
| 2
| 2015/5/14 13:25
|-
|[[Os08g0137250|'''''FIE1''''']]
|[[Os08g0137250]]
| 7.185
| 14660
| 0.49
| 2
| 2
| 2015/6/12 17:25
|-
|[[Os02g0220400|'''''Cga1''''']]
|[[Os02g0220400]]
| 7.158
| 17791
| 0.402
| 6
| 8
| 2015/5/14 13:36
|-
|[[Os10g0404500|'''''SUTs''''']]
|[[Os10g0404500]]
| 7.151
| 7164
| 0.998
| 2
| 2
| 2014/6/7 23:34
|-
|[[Os10g0177200|'''''OsDSR-1''''']]
|[[Os10g0177200]]
| 7.15
| 9017
| 0.793
| 3
| 3
| 2015/6/13 16:45
|-
|[[Os10g0496900|'''''OsPORB''''']]
|[[Os10g0496900]]
| 7.143
| 14022
| 0.509
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os02g0313400|'''''API5''''']]
|[[Os02g0313400]]
| 7.12
| 14554
| 0.489
| 2
| 2
| 2015/5/14 13:39
|-
|[[Os08g0117000|'''''PSS1''''']]
|[[Os08g0117000]]
| 7.092
| 8202
| 0.865
| 2
| 2
| 2015/6/12 17:24
|-
|[[Os08g0531700|'''''MADS-box''''']]
|[[Os08g0531700]]
| 7.054
| 13276
| 0.531
| 2
| 2
| 2015/6/12 17:33
|-
|[[Os06g0499500|'''''GH3''''']]
|[[Os06g0499500]]
| 7.051
| 12958
| 0.544
| 3
| 4
| 2015/6/12 16:15
|-
|[[Os03g0188400|'''''OsSRT1''''']]
|[[Os03g0188400]]
| 7.05
| 12067
| 0.584
| 2
| 2
| 2015/6/12 13:06
|-
|[[Os02g0649900|'''''OsYSL2''''']]
|[[Os02g0649900]]
| 7.031
| 12503
| 0.562
| 2
| 2
| 2015/5/14 13:48
|-
|[[Os09g0442700|'''''OsDDM1''''']]
|[[Os09g0442700]]
| 7.028
| 10589
| 0.664
| 2
| 2
| 2015/6/12 17:44
|-
|[[Os12g0438600|'''''AtCLC-a''''']]
|[[Os12g0438600]]
| 7.022
| 14835
| 0.473
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os07g0124700|'''''CRL5''''']]
|[[Os07g0124700]]
| 6.998
| 14469
| 0.484
| 2
| 2
| 2015/6/12 16:31
|-
|[[Os11g0639100|'''''Pi54''''']]
|[[Os11g0639100]]
| 6.934
| 11269
| 0.615
| 4
| 4
| 2015/6/13 17:09
|-
|[[Os01g0615050|'''''OCPI1''''']]
|[[Os01g0615050]]
| 6.92
| 9869
| 0.701
| 2
| 2
| 2015/5/13 15:18
|-
|[[Os12g0610200|'''''OsPIL11''''']]
|[[Os12g0610200]]
| 6.911
| 12604
| 0.548
| 4
| 4
| 2015/6/13 17:18
|-
|[[Os03g0123300|'''''TAD1''''']]
|[[Os03g0123300]]
| 6.87
| 15272
| 0.45
| 4
| 8
| 2015/6/12 13:00
|-
|[[Os07g0682800|'''''rth1''''']]
|[[Os07g0682800]]
| 6.853
| 13550
| 0.506
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os11g0446000|'''''RSS3''''']]
|[[Os11g0446000]]
| 6.838
| 13942
| 0.49
| 5
| 5
| 2015/6/13 17:07
|-
|[[Os07g0182900|'''''OsMET1a''''']]
|[[Os07g0182900]]
| 6.821
| 13295
| 0.513
| 5
| 11
| 2015/6/12 16:33
|-
|[[Os01g0205700|'''''OsGSK1''''']]
|[[Os01g0205700]]
| 6.813
| 12490
| 0.545
| 2
| 2
| 2015/5/13 15:04
|-
|[[Os05g0333200|'''''GPA1''''']]
|[[Os05g0333200]]
| 6.778
| 8703
| 0.779
| 2
| 2
| 2014/6/9 9:17
|-
|[[Os10g0167600|'''''OsCPDP''''']]
|[[Os10g0167600]]
| 6.756
| 14570
| 0.464
| 4
| 4
| 2015/6/13 16:45
|-
|[[Os07g0227800|'''''OsABC1-9''''']]
|[[Os07g0227800]]
| 6.744
| 10826
| 0.623
| 2
| 2
| 2015/6/12 16:37
|-
|[[Os10g0567400|'''''OsCAO1''''']]
|[[Os10g0567400]]
| 6.732
| 13437
| 0.501
| 3
| 3
| 2015/6/13 16:58
|-
|'''''[[DEP2]]'''''
|
| 6.724
| 6763
| 0.994
| 3
| 7
| 2014/6/10 22:30
|-
|[[Os07g0592600|'''''OsMGH3''''']]
|[[Os07g0592600]]
| 6.72
| 15320
| 0.439
| 5
| 11
| 2015/6/12 16:46
|-
|[[Os11g0126900|'''''OsNAC10''''']]
|[[Os11g0126900]]
| 6.705
| 6705
| 1
| 1
| 1
| 2014/5/24 12:41
|-
|[[Os09g0561600|'''''OsDEES1''''']]
|[[Os09g0561600]]
| 6.699
| 11352
| 0.59
| 2
| 2
| 2015/6/13 16:42
|-
|'''''[[Sub1A]]'''''
|
| 6.679
| 6679
| 1
| 1
| 1
| 2014/6/4 16:03
|-
|[[Os08g0126300|'''''OsGAPDH''''']]
|[[Os08g0126300]]
| 6.658
| 13730
| 0.485
| 2
| 2
| 2015/6/12 17:24
|-
|[[Os10g0533600|'''''OsMPK6''''']]
|[[Os10g0533600]]
| 6.522
| 8207
| 0.795
| 3
| 3
| 2015/6/13 16:46
|-
|[[Os10g0397400|'''''dwarf2''''']]
|[[Os10g0397400]]
| 6.52
| 11105
| 0.587
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os06g0712700|'''''OsMADS16''''']]
|[[Os06g0712700]]
| 6.51
| 7624
| 0.854
| 2
| 2
| 2014/6/9 16:43
|-
|[[Os08g0237000|'''''OsXTH8''''']]
|[[Os08g0237000]]
| 6.46
| 6460
| 1
| 1
| 1
| 2014/6/9 18:44
|-
|[[Os02g0811000|'''''TH1''''']]
|[[Os02g0811000]]
| 6.453
| 11487
| 0.562
| 2
| 2
| 2015/5/14 14:02
|-
|[[Os07g0505200|'''''OsSPL13''''']]
|[[Os07g0505200]]
| 6.444
| 6444
| 1
| 1
| 1
| 2016/6/13 9:49
|-
|[[Os11g0247300|'''''Srs5''''']]
|[[Os11g0247300]]
| 6.442
| 13081
| 0.492
| 4
| 4
| 2015/6/13 17:05
|-
|[[AY986492|'''''Xa27''''']]
|[[AY986492]]
| 6.408
| 6408
| 1
| 2
| 2
| 2014/6/10 21:12
|-
|[[Os06g0700700|'''''OsHMA2''''']]
|[[Os06g0700700]]
| 6.404
| 6404
| 1
| 1
| 1
| 2014/6/3 20:16
|-
|[[Os02g0771400|'''''OsPFA-DSP2''''']]
|[[Os02g0771400]]
| 6.399
| 6702
| 0.955
| 2
| 3
| 2014/5/12 16:03
|-
|[[Os06g0127800|'''''DLT''''']]
|[[Os06g0127800]]
| 6.393
| 10797
| 0.592
| 2
| 2
| 2015/6/12 16:03
|-
|[[Os02g0120500|'''''OsTDR''''']]
|[[Os02g0120500]]
| 6.372
| 6372
| 1
| 1
| 1
| 2015/5/14 13:19
|-
|[[Os03g0854500|'''''OsHsfs''''']]
|[[Os03g0854500]]
| 6.367
| 10086
| 0.631
| 2
| 2
| 2015/5/15 13:40
|-
|[[Os06g0275000|'''''Hd1''''']]
|[[Os06g0275000]]
| 6.307
| 11994
| 0.526
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os02g0759800|'''''OsSKIPa''''']]
|[[Os02g0759800]]
| 6.249
| 12883
| 0.485
| 2
| 2
| 2015/5/14 14:00
|-
|[[Os08g0101000|'''''IDEF1''''']]
|[[Os08g0101000]]
| 6.239
| 10862
| 0.574
| 2
| 2
| 2015/6/12 17:22
|-
|[[Os09g0456200|'''''OsbZIP72''''']]
|[[Os09g0456200]]
| 6.23
| 10901
| 0.572
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os12g0101600|'''''leaf2''''']]
|[[Os12g0101600]]
| 6.221
| 35095
| 0.177
| 2
| 3
| 2014/5/31 21:22
|-
|[[Os06g0695800|'''''STAR1''''']]
|[[Os06g0695800]]
| 6.213
| 8582
| 0.724
| 2
| 2
| 2015/6/12 16:24
|-
|[[Os02g0606700|'''''RSS1''''']]
|[[Os02g0606700]]
| 6.198
| 12432
| 0.499
| 2
| 2
| 2015/5/14 13:44
|-
|[[Os11g0210300|'''''Adh1''''']]
|[[Os11g0210300]]
| 6.196
| 12384
| 0.5
| 3
| 3
| 2015/6/13 17:04
|-
|[[Os02g0736400|'''''OsDHODH''''']]
|[[Os02g0736400]]
| 6.183
| 11839
| 0.522
| 2
| 2
| 2015/5/14 13:57
|-
|[[Os08g0549100|'''''OsAPx4''''']]
|[[Os08g0549100]]
| 6.175
| 10093
| 0.612
| 2
| 2
| 2015/6/12 17:35
|-
|[[Os09g0452200|'''''LYP4''''']]
|[[Os09g0452200]]
| 6.171
| 11987
| 0.515
| 2
| 2
| 2015/6/12 17:45
|-
|[[Os02g0170300|'''''OsMADS29''''']]
|[[Os02g0170300]]
| 6.166
| 12582
| 0.49
| 3
| 4
| 2015/5/14 13:23
|-
|[[Os03g0224700|'''''Hsfs''''']]
|[[Os03g0224700]]
| 6.166
| 11925
| 0.517
| 4
| 4
| 2015/6/12 13:35
|-
|[[Os07g0558500|'''''THF1''''']]
|[[Os07g0558500]]
| 6.078
| 12744
| 0.477
| 5
| 9
| 2015/6/12 16:45
|-
|[[Os09g0511000|'''''OsCERK1''''']]
|[[Os09g0511000]]
| 6.076
| 12097
| 0.502
| 2
| 2
| 2015/6/12 22:35
|-
|'''''[[OsWRKY13]]'''''
|
| 6.069
| 6101
| 0.995
| 2
| 3
| 2014/6/4 20:18
|-
|[[Os06g0308100|'''''OsIBR5''''']]
|[[Os06g0308100]]
| 6.062
| 12455
| 0.487
| 2
| 2
| 2015/6/12 16:13
|-
|[[Os11g0113700|'''''OsCIPK15''''']]
|[[Os11g0113700]]
| 5.961
| 12261
| 0.486
| 3
| 3
| 2015/6/13 17:00
|-
|[[Os02g0656600|'''''GPA3''''']]
|[[Os02g0656600]]
| 5.915
| 10022
| 0.59
| 2
| 2
| 2015/5/14 13:50
|-
|[[Os01g0733200|'''''OsHsfC1b''''']]
|[[Os01g0733200]]
| 5.889
| 5889
| 1
| 1
| 1
| 2014/5/31 11:56
|-
|[[Os01g0785400|'''''GH3''''']]
|[[Os01g0785400]]
| 5.864
| 10600
| 0.553
| 2
| 2
| 2015/5/13 15:34
|-
|[[Os04g0541700|'''''Oshox22''''']]
|[[Os04g0541700]]
| 5.857
| 6037
| 0.97
| 2
| 3
| 2014/6/8 16:10
|-
|[[Os08g0140500|'''''TDC-3''''']]
|[[Os08g0140500]]
| 5.829
| 11343
| 0.514
| 2
| 2
| 2015/6/12 17:26
|-
|'''''[[IPK1]]'''''
|
| 5.803
| 5803
| 1
| 1
| 1
| 2014/6/8 16:55
|-
|[[Os09g0522100|'''''CBF''''']]
|[[Os09g0522100]]
| 5.713
| 9270
| 0.616
| 2
| 2
| 2015/6/12 22:36
|-
|[[Os01g0177900|'''''OsABCG31''''']]
|[[Os01g0177900]]
| 5.693
| 11327
| 0.503
| 2
| 2
| 2015/5/13 14:58
|-
|[[Os02g0149800|'''''OsPP18''''']]
|[[Os02g0149800]]
| 5.681
| 11452
| 0.496
| 2
| 2
| 2015/5/14 13:22
|-
|[[Os01g0831000|'''''LAX''''']]
|[[Os01g0831000]]
| 5.68
| 9517
| 0.597
| 2
| 2
| 2015/5/13 15:37
|-
|[[Os05g0580500|'''''OsRAD21-4''''']]
|[[Os05g0580500]]
| 5.66
| 5660
| 1
| 1
| 1
| 2014/5/23 11:03
|-
|'''''[[OsCERK1]]'''''
|
| 5.61
| 5610
| 1
| 1
| 1
| 2014/6/1 18:31
|-
|[[Os11g0116200|'''''LTPs''''']]
|[[Os11g0116200]]
| 5.602
| 7206
| 0.777
| 3
| 3
| 2015/6/13 17:00
|-
|[[Os09g0567800|'''''Lipase''''']]
|[[Os09g0567800]]
| 5.558
| 5558
| 1
| 1
| 1
| 2014/6/6 16:24
|-
|[[Os06g0610350|'''''OsMOC1''''']]
|[[Os06g0610350]]
| 5.547
| 5547
| 1
| 1
| 1
| 2016/6/12 13:57
|-
|[[Os02g0657000|'''''ARAG1''''']]
|[[Os02g0657000]]
| 5.536
| 9210
| 0.601
| 2
| 2
| 2015/5/14 13:51
|-
|'''''[[Wbph8]]'''''
|
| 5.531
| 5531
| 1
| 1
| 1
| 2014/6/10 18:50
|-
|[[Os07g0563300|'''''GD1''''']]
|[[Os07g0563300]]
| 5.487
| 11105
| 0.494
| 2
| 2
| 2015/6/12 16:45
|-
|[[Os06g0701700|'''''OsHKT2;1''''']]
|[[Os06g0701700]]
| 5.432
| 8295
| 0.655
| 2
| 2
| 2015/6/12 16:26
|-
|[[Os10g0419200|'''''RID1''''']]
|[[Os10g0419200]]
| 5.432
| 9118
| 0.596
| 3
| 3
| 2015/6/13 16:44
|-
|'''''[[OsCEBiP]]'''''
|
| 5.419
| 5419
| 1
| 1
| 1
| 2014/6/8 12:32
|-
|'''''[[Xa10]]'''''
|
| 5.416
| 5416
| 1
| 1
| 1
| 2014/6/1 16:52
|-
|[[Os03g0272300|'''''OsSDIR1''''']]
|[[Os03g0272300]]
| 5.41
| 9862
| 0.549
| 2
| 2
| 2015/6/12 13:39
|-
|[[Os10g0528300|'''''GSTs''''']]
|[[Os10g0528300]]
| 5.364
| 9566
| 0.561
| 3
| 3
| 2015/6/13 16:46
|-
|'''''[[Badh2]]'''''
|
| 5.363
| 5363
| 1
| 1
| 1
| 2014/6/8 19:38
|-
|[[Os03g0233900|'''''Hbs''''']]
|[[Os03g0233900]]
| 5.348
| 9011
| 0.593
| 2
| 2
| 2015/6/12 13:38
|-
|'''''[[Xa21]]'''''
|
| 5.345
| 5345
| 1
| 1
| 1
| 2014/6/1 13:37
|-
|'''''[[Bls1]]'''''
|
| 5.308
| 5308
| 1
| 1
| 1
| 2014/5/24 15:17
|-
|[[Os06g0157700|'''''Hd3''''']]
|[[Os06g0157700]]
| 5.304
| 10277
| 0.516
| 2
| 2
| 2015/6/12 16:06
|-
|[[Os02g0260200|'''''LP''''']]
|[[Os02g0260200]]
| 5.302
| 7745
| 0.685
| 2
| 2
| 2015/5/14 13:37
|-
|[[Os03g0232600|'''''TUD1''''']]
|[[Os03g0232600]]
| 5.249
| 10595
| 0.495
| 2
| 2
| 2015/6/12 13:37
|-
|[[Os03g0125100|'''''OsHYD3''''']]
|[[Os03g0125100]]
| 5.183
| 10331
| 0.502
| 2
| 2
| 2015/6/12 13:01
|-
|[[Os06g0212900|'''''ORF3''''']]
|[[Os06g0212900]]
| 5.175
| 6651
| 0.778
| 3
| 3
| 2015/6/12 16:09
|-
|[[Os02g0491300|'''''MTR1''''']]
|[[Os02g0491300]]
| 5.166
| 10047
| 0.514
| 2
| 2
| 2015/5/14 13:40
|-
|[[Os09g0470500|'''''Oshox4''''']]
|[[Os09g0470500]]
| 5.144
| 9661
| 0.532
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os09g0439800|'''''DRO1''''']]
|[[Os09g0439800]]
| 5.122
| 8022
| 0.638
| 3
| 4
| 2015/6/12 17:43
|-
|[[Os12g0555500|'''''PBZ1''''']]
|[[Os12g0555500]]
| 5.108
| 8929
| 0.572
| 3
| 3
| 2015/6/13 17:17
|-
|[[Os11g0508600|'''''Os-11N3''''']]
|[[Os11g0508600]]
| 5.066
| 7754
| 0.653
| 3
| 3
| 2015/6/13 17:07
|-
|[[Os08g0174500|'''''OsDTH8''''']]
|[[Os08g0174500]]
| 5.017
| 9397
| 0.534
| 3
| 3
| 2015/6/12 17:28
|-
|[[Os03g0267200|'''''sHSP17.7''''']]
|[[Os03g0267200]]
| 5.008
| 7991
| 0.627
| 2
| 2
| 2015/6/12 13:39
|-
|[[Os06g0622700|'''''OsbZIP50 ''''']]
|[[Os06g0622700]]
| 5
| 9868
| 0.507
| 2
| 2
| 2015/6/12 16:19
|-
|'''''[[SBP]]'''''
|
| 4.997
| 4997
| 1
| 1
| 1
| 2013/7/21 18:43
|-
|[[Os05g0465800|'''''PI3K''''']]
|[[Os05g0465800]]
| 4.939
| 4939
| 1
| 1
| 1
| 2014/6/6 16:19
|-
|[[Os10g0491000|'''''BSP''''']]
|[[Os10g0491000]]
| 4.912
| 8991
| 0.546
| 3
| 3
| 2015/6/13 16:47
|-
|[[Os01g0206700|'''''OsCIPK05''''']]
|[[Os01g0206700]]
| 4.909
| 9664
| 0.508
| 2
| 2
| 2015/5/13 15:05
|-
|[[Os06g0643300|'''''RISBZ1''''']]
|[[Os06g0643300]]
| 4.869
| 7953
| 0.612
| 2
| 2
| 2015/6/12 16:20
|-
|[[Os03g0180800|'''''OsTIFY11a''''']]
|[[Os03g0180800]]
| 4.859
| 8158
| 0.596
| 2
| 2
| 2015/6/12 13:04
|-
|'''''[[BPH_gene]]'''''
|
| 4.857
| 4857
| 1
| 2
| 2
| 2014/6/11 11:14
|-
|[[Os01g0805600|'''''CycB1''''']]
|[[Os01g0805600]]
| 4.842
| 4842
| 1
| 1
| 1
| 2014/6/5 18:11
|-
|[[Os06g0701600|'''''HKT''''']]
|[[Os06g0701600]]
| 4.831
| 7482
| 0.646
| 2
| 2
| 2015/6/12 16:25
|-
|[[Os08g0531600|'''''OsSPL16''''']]
|[[Os08g0531600]]
| 4.818
| 4825
| 0.999
| 2
| 2
| 2014/5/27 23:11
|-
|[[Os06g0254700|'''''OsCLO-6''''']]
|[[Os06g0254700]]
| 4.802
| 7514
| 0.639
| 2
| 2
| 2015/6/12 16:12
|-
|[[Os01g0615100|'''''OCPI2''''']]
|[[Os01g0615100]]
| 4.794
| 7379
| 0.65
| 2
| 2
| 2015/5/13 15:19
|-
|'''''[[HSF]]'''''
|
| 4.772
| 4781
| 0.998
| 2
| 2
| 2013/7/21 20:57
|-
|[[Os06g0125800|'''''OsBBI1''''']]
|[[Os06g0125800]]
| 4.629
| 9410
| 0.492
| 2
| 2
| 2015/6/12 16:02
|-
|[[Os07g0628500|'''''OsbHLH1''''']]
|[[Os07g0628500]]
| 4.606
| 8573
| 0.537
| 2
| 2
| 2015/6/12 16:48
|-
|[[Os07g0694700|'''''APX''''']]
|[[Os07g0694700]]
| 4.569
| 8480
| 0.539
| 2
| 2
| 2015/6/12 16:50
|-
|[[Os01g0293100|'''''TIP2''''']]
|[[Os01g0293100]]
| 4.568
| 8480
| 0.539
| 2
| 2
| 2015/5/13 15:12
|-
|'''''[[Rl14]]'''''
|
| 4.564
| 4764
| 0.958
| 2
| 2
| 2014/6/10 11:19
|-
|'''''[[OsRPA2]]'''''
|
| 4.552
| 4552
| 1
| 1
| 1
| 2014/6/6 9:13
|-
|[[Os06g0604000|'''''OsWR2''''']]
|[[Os06g0604000]]
| 4.53
| 8229
| 0.55
| 2
| 2
| 2015/6/12 16:18
|-
|[[Os01g0192000|'''''OsDOS''''']]
|[[Os01g0192000]]
| 4.527
| 4527
| 1
| 1
| 1
| 2015/7/30 23:13
|-
|[[Os01g0922800|'''''OsMADS51''''']]
|[[Os01g0922800]]
| 4.506
| 4506
| 1
| 1
| 1
| 2014/5/24 18:45
|-
|[[Os02g0787300|'''''OsRac1''''']]
|[[Os02g0787300]]
| 4.483
| 6886
| 0.651
| 2
| 2
| 2015/5/14 14:01
|-
|[[Os09g0439200|'''''OsJAZ8''''']]
|[[Os09g0439200]]
| 4.477
| 8745
| 0.512
| 2
| 2
| 2015/6/12 17:42
|-
|[[Os01g0822900|'''''Dwarf1''''']]
|[[Os01g0822900]]
| 4.447
| 7550
| 0.589
| 3
| 4
| 2015/5/13 15:36
|-
|[[Os08g0167500|'''''CRR6''''']]
|[[Os08g0167500]]
| 4.432
| 8906
| 0.498
| 2
| 2
| 2015/6/12 17:27
|-
|'''''[[Sucrose_synthase]]'''''
|
| 4.428
| 4436
| 0.998
| 2
| 2
| 2013/7/18 11:20
|-
|'''''[[CL971152]]'''''
|
| 4.417
| 4472
| 0.988
| 2
| 2
| 2014/6/10 21:51
|-
|[[Os12g0603700|'''''OsCIPK04''''']]
|[[Os12g0603700]]
| 4.375
| 9322
| 0.469
| 3
| 3
| 2015/6/13 17:18
|-
|[[Os02g0618400|'''''OsMPS''''']]
|[[Os02g0618400]]
| 4.347
| 8707
| 0.499
| 2
| 2
| 2015/5/14 13:45
|-
|[[Os03g0182800|'''''OsDERF1''''']]
|[[Os03g0182800]]
| 4.322
| 6519
| 0.663
| 2
| 2
| 2015/6/12 13:05
|-
|'''''[[ARF]]'''''
|
| 4.308
| 4308
| 1
| 1
| 1
| 2013/7/21 20:46
|-
|[[Os03g0183000|'''''OsRAF''''']]
|[[Os03g0183000]]
| 4.286
| 4286
| 1
| 1
| 1
| 2014/6/9 20:10
|-
|[[Os02g0654700|'''''AP59''''']]
|[[Os02g0654700]]
| 4.285
| 8306
| 0.516
| 2
| 2
| 2015/5/14 13:49
|-
|[[Os09g0466400|'''''OsZHD1''''']]
|[[Os09g0466400]]
| 4.265
| 8095
| 0.527
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os03g0103300|'''''qLTG3''''']]
|[[Os03g0103300]]
| 4.188
| 7457
| 0.562
| 2
| 2
| 2015/6/12 12:56
|-
|[[Os01g0834400|'''''OsHAP3A''''']]
|[[Os01g0834400]]
| 4.109
| 4109
| 1
| 1
| 1
| 2014/5/31 19:19
|-
|[[Os07g0512200|'''''OsAtg8''''']]
|[[Os07g0512200]]
| 4.095
| 7690
| 0.533
| 4
| 4
| 2015/6/12 16:43
|-
|'''''[[Bph9]]'''''
|
| 4.084
| 4084
| 1
| 1
| 1
| 2014/6/9 12:23
|-
|[[Os06g0181700|'''''OsWR1''''']]
|[[Os06g0181700]]
| 4.083
| 7433
| 0.549
| 2
| 2
| 2015/6/12 16:07
|-
|[[Os06g0157500|'''''RFT1''''']]
|[[Os06g0157500]]
| 4.013
| 7888
| 0.509
| 3
| 3
| 2015/6/12 16:06
|-
|[[Os09g0537700|'''''OsRNS4''''']]
|[[Os09g0537700]]
| 3.992
| 6731
| 0.593
| 2
| 2
| 2015/6/12 22:36
|-
|[[Os02g0610500|'''''OsCOL4''''']]
|[[Os02g0610500]]
| 3.946
| 3946
| 1
| 1
| 1
| 2014/5/20 11:57
|-
|[[Os07g0529600|'''''OsDR8''''']]
|[[Os07g0529600]]
| 3.915
| 6908
| 0.567
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os09g0106700|'''''AKT1''''']]
|[[Os09g0106700]]
| 3.845
| 6498
| 0.592
| 2
| 2
| 2015/6/12 17:37
|-
|[[Os07g0568700|'''''OsFOR1''''']]
|[[Os07g0568700]]
| 3.845
| 6600
| 0.583
| 2
| 2
| 2015/6/12 16:46
|-
|'''''[[Pik-p]]'''''
|
| 3.816
| 3816
| 1
| 1
| 1
| 2014/6/6 10:16
|-
|[[Os06g0493100|'''''Bphi008a''''']]
|[[Os06g0493100]]
| 3.804
| 7241
| 0.525
| 2
| 2
| 2015/6/12 16:14
|-
|[[Os02g0552700|'''''OsZFP6''''']]
|[[Os02g0552700]]
| 3.779
| 6604
| 0.572
| 2
| 2
| 2015/5/14 13:43
|-
|[[Os12g0100500|'''''COG2267''''']]
|[[Os12g0100500]]
| 3.729
| 5669
| 0.658
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os07g0129200|'''''OsPR1''''']]
|[[Os07g0129200]]
| 3.716
| 6629
| 0.561
| 2
| 2
| 2015/6/12 16:32
|-
|[[Os10g0558900|'''''RL14''''']]
|[[Os10g0558900]]
| 3.699
| 7398
| 0.5
| 5
| 9
| 2015/6/13 16:57
|-
|[[Os01g0177400|'''''ACO1''''']]
|[[Os01g0177400]]
| 3.693
| 6293
| 0.587
| 3
| 3
| 2015/5/13 14:57
|-
|[[Os09g0380200|'''''YLC1''''']]
|[[Os09g0380200]]
| 3.69
| 6890
| 0.536
| 3
| 3
| 2015/6/12 17:40
|-
|[[Os08g0163400|'''''OsSIG1''''']]
|[[Os08g0163400]]
| 3.662
| 3662
| 1
| 1
| 1
| 2014/6/9 20:52
|-
|[[Os09g0396900|'''''OsVIT2''''']]
|[[Os09g0396900]]
| 3.437
| 6527
| 0.527
| 2
| 2
| 2015/6/12 17:41
|-
|[[Os03g0786400|'''''OsCKX2''''']]
|[[Os03g0786400]]
| 3.372
| 3372
| 1
| 1
| 1
| 2014/5/20 0:08
|-
|'''''[[Bhp-3]]'''''
|
| 3.33
| 3330
| 1
| 1
| 1
| 2014/5/31 23:33
|-
|[[Os07g0641200|'''''OsCCaMK''''']]
|[[Os07g0641200]]
| 3.212
| 6389
| 0.503
| 2
| 2
| 2015/6/12 16:49
|-
|[[Os07g0549600|'''''UDT1''''']]
|[[Os07g0549600]]
| 3.204
| 5875
| 0.545
| 2
| 2
| 2015/6/12 16:44
|-
|[[Os11g0582500|'''''OsC6''''']]
|[[Os11g0582500]]
| 3.13
| 5666
| 0.552
| 3
| 3
| 2015/6/13 17:09
|-
|[[Os03g0135700|'''''RAI1''''']]
|[[Os03g0135700]]
| 3.126
| 3126
| 1
| 1
| 1
| 2014/6/7 0:43
|-
|[[Os09g0459200|'''''SG1''''']]
|[[Os09g0459200]]
| 3.094
| 5090
| 0.608
| 2
| 2
| 2015/6/12 17:46
|-
|[[Os11g0523700|'''''OsICE1''''']]
|[[Os11g0523700]]
| 3.071
| 3079
| 0.997
| 2
| 2
| 2014/6/3 13:41
|-
|[[Os01g0928000|'''''OsICE2''''']]
|[[Os01g0928000]]
| 3.071
| 3079
| 0.997
| 2
| 2
| 2014/6/3 13:41
|-
|[[Os09g0522200|'''''OsDREB1A''''']]
|[[Os09g0522200]]
| 3.031
| 5920
| 0.512
| 3
| 3
| 2015/6/12 22:36
|-
|[[Os06g0127100|'''''OsDREB1C''''']]
|[[Os06g0127100]]
| 3.015
| 5846
| 0.516
| 3
| 3
| 2015/6/12 16:02
|-
|[[Os10g0573400|'''''OsPYL10''''']]
|[[Os10g0573400]]
| 3.009
| 6148
| 0.489
| 4
| 4
| 2015/6/13 16:58
|-
|[[Os01g0274800|'''''CSA''''']]
|[[Os01g0274800]]
| 2.805
| 2805
| 1
| 1
| 1
| 2014/5/28 21:34
|-
|[[BGIOSGA033504|'''''csld4''''']]
|[[BGIOSGA033504]]
| 2.803
| 2818
| 0.995
| 2
| 2
| 2014/6/3 16:43
|-
|[[Os11g0454000|'''''rab16c''''']]
|[[Os11g0454000]]
| 2.786
| 5342
| 0.522
| 3
| 3
| 2015/6/13 17:07
|-
|[[Os10g0148000|'''''OsDIL''''']]
|[[Os10g0148000]]
| 2.697
| 5106
| 0.528
| 3
| 3
| 2015/6/13 16:44
|-
|[[Os08g0566600|'''''PGR5''''']]
|[[Os08g0566600]]
| 2.632
| 4314
| 0.61
| 2
| 2
| 2015/6/12 17:35
|-
|[[Os03g0150200|'''''OsAP23''''']]
|[[Os03g0150200]]
| 2.621
| 5115
| 0.512
| 2
| 2
| 2015/6/12 13:03
|-
|[[Os05g0341600|'''''RAB21''''']]
|[[Os05g0341600]]
| 2.592
| 2640
| 0.982
| 2
| 3
| 2014/6/1 17:02
|-
|[[Os07g0191600|'''''STR2''''']]
|[[Os07g0191600]]
| 2.541
| 2541
| 1
| 1
| 1
| 2014/6/11 19:08
|-
|[[Os05g0107700|'''''xa5''''']]
|[[Os05g0107700]]
| 2.152
| 2152
| 1
| 1
| 1
| 2014/6/8 17:23
|-
|[[Os07g0492000|'''''OsNDPK1''''']]
|[[Os07g0492000]]
| 1.777
| 1777
| 1
| 1
| 1
| 2014/6/9 23:45
|-
|[[Os03g0741100|'''''OsbHLH148''''']]
|[[Os03g0741100]]
| 1.578
| 1578
| 1
| 1
| 1
| 2014/5/19 3:18
|}

Os01g0928000

2017-05-07T03:08:31Z

Xysj2027:

The rice gene Os01g0928000 was reported as '''''OsICE2''''' in 2011<ref name="ref1"/>, '''''OsbHLH001/OsICE2''''' in 2013<ref name="ref2"/>, respectively.

==Annotated Information==
===Gene Symbol===
*'''''Os01g0928000''''' '''''<=>''''' '''''ICE2, OsICE2, OsbHLH001'''''

===Function===
''OsICE'' '''homologs''' ''OsbHLH001/OsICE2'' and ''OsbHLH002/OsICE1'' function in '''regulating ''OsDREB1B'' and ''OsHsfA3''''' involved in '''cold acclimation''' and '''trehalose synthesis'''<ref name="ref1"/><ref name="ref2"/>.

'''GO assignment(s):''' GO:0005634, [http://amigo.geneontology.org/amigo/term/GO:0030528 GO:0030528], GO:0045449

===Expression===
*Chilling stress on rice seedlings induced '''two ICE-related proteins''' with molecular masses of approximately 55 and 40 kDa. These sizes are consistent with those predicted for ''OsICE1'' and ''OsICE2'', respectively. In contrast to the proteins, cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''<ref name="ref1"/>.

*'''Salt stress upregulated''' levels of ''OsICE2'' '''protein''' but had '''no effect''' on OsICE2 '''mRNA''' levels. RT-PCR revealed that '''cold stress increased''' the levels of ''OsICE1'' and ''OsICE2'' proteins but did not enhance the expression of their genes. ''OsICE1'' and ''OsICE2'' are regulated mainly '''by post-translational mechanisms''', in a manner similar to that of ''Arabidopsis'' ICE1<ref name="ref1"/>.

===Evolution===
[[File: OsICE2 phylogenic1.jpg|right|thumb|250px|'''Figure 1.''' ''Phylogenic tree of ICE (Inducer of CBF Expression) homologs.(from reference <ref name="ref1"/>).'']]
*A '''phylogenetic tree''' of '''ICE homologs''' in '''dicots''' and '''monocots''', using ''Arabidopsis'' PIF3 and human c-myc as outgroups, showed that ICE-related genes can be classified into '''monocot and dicot subfamilies''' (Figure 1).

*''OsICE1'' and ''OsICE2'' share '''very similar sets of motifs''', notably '''an acidic domain''', '''a Ser-rich domain''', '''a bHLH domain''', and '''a possible zipper region''', with ''Arabidopsis'' ''ICE1'', although ''OsICE2'' has a shorter junction region between the acidic region and the Ser-rich region in the amino terminus than ''OsICE1'' and ''Arabidopsis ICE1''<ref name="ref1"/>.

*Although ''OsICE1'' and ''OsICE2'' have '''different predicted molecular masses''', they share '''48% similarity''' at the '''amino acid level'''. They also have '''similarities''' of '''39%''' and '''45%''', respectively, to ''Arabidopsis''<ref name="ref1"/>.

==Labs working on this gene==
*Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan
*Department of Bioresource Sciences, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
*School of Agriculture, Kyushu University, Fukuoka 812-8581, Japan

==References==
<references>
* <ref name="ref1">
Nakamura J, Yuasa T, Huong T T, et al. Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation[J]. Plant biotechnology, 2011, 28(3): 303-309.
</ref>
* <ref name="ref2">
Chen Y, Li F, Ma Y, et al. Overexpression of OrbHLH001, a putative helix–loop–helix transcription factor, causes increased expression of AKT1 and maintains ionic balance under salt stress in rice[J]. Journal of plant physiology, 2013, 170(1): 93-100.
</ref>
</references>

==Structured Information==
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]