Yanyangtian: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
[[File:identification.png|right|thumb|150px|"Figure 1. Identification of the rice SG1 gene by activation tagging. A to C, Phenotypes of the Sg1-Dricemutant. A,Heading stage: In
comparison with the wild-type plants (WT), the Sg1-D homozygote showed a semidwarf phenotype. B, The short-grain phenotype
cosegregatedwith the T-DNA insertion in a dose-dependent manner. Seeds ofWT (+/+), Sg1-D heterozygotes (Sg1-D/+), and Sg1-D
homozygotes (Sg1-D homo) are shown. Means and SD from at least 30 measurements of lengths (L, mm), widths (W, mm), and the
ratio of length towidth (L/W) are shown below the seeds. C, Leaf blades of the Sg1-D homozygote were dark green and were shorter
and wider than those of wild type. Means and SD from at least nine measurements of lengths (L, cm) and widths (W, cm) of second
uppermost leaves are shown. D, Schematic representation of the T-DNA flanking region of the Sg1-D mutant. A candidate for the
ORF responsible for the phenotype (Os09g0459200, which encodes a novel protein with unknown function, colored blue), referred
to as SG1, is located 1.4-kb downstream of the T-DNA insertion. The cauliflower mosaic virus 35S minimal promoter (P35S) and a
tetramer of the 35S enhancer (43EN) are shown by the black triangles and the green box, respectively. LB and RB are left and right
borders of the T-DNA. Pnos, Nopaline synthase promoter sequence; PAT, ORF-containing region of the phosphinothricin
acetyltransferase gene. E, The levels of SG1 mRNA in the WT, Sg1-D heterozygote, and Sg1-D homozygote plants. For each
genotype, RNA from two independent plants was used for qPCR, and values were normalized using RUBQ2 as a standard. F, The
Sg1-D mutant shows reduced panicle internode elongation in a dose-dependent manner. Bases of the terminal spikelets and nodes
of the primary rachis branches are connectedwith dotted lines. Asterisks show that significantly different fromWT. **, P,0.01; ***,
P , 0.001 (Student’s t test)(from reference<ref name="ref1"/>）." ]]
SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent
of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses
to BRs and elongation of organs such as seeds and the internodes of rachis branches through
decreased cellular proliferation<ref name="ref1"/>

===Expression===

During vegetative growth,SG1 was preferentially expressed in the roots. During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured. In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.
SG1 encodes a novel protein that is conserved among angiosperms.SG1 does not share significant identity with any proteins of known function.
However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0459200|
Description = Conserved hypothetical protein|
Version = NM_001069915.1 GI:115479572 GeneID:4347276|
Length = 1474 bp|
Definition = Oryza sativa Japonica Group Os09g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18004651..18006124|
CDS = 18004776..18005216,18005552..18005584|
GCID = <gbrowseImage1>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggatcttggaggtcaagggagcacgagagactga</cdnaseq>|
AA = <aaseq>MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAV RAPGDADFEFSVGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTD SRHGRVPRAPNIRWKEFLGLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD</aaseq>|
DNA = <dnaseqindica>126..566#902..934#attctccatagcttggccaccgtagtaaagccggcgagctaattctagttctagccagctacacgagatcatcgctgtgacgggcggggcattgagagggcgcgtgtgccggccggggtcgatgcatggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggtaataacaagctcactgtttcttgcgccatgaatgcactctgctacagctctgcattgtcccattttgcttgtcgcattgcaacatttttcgaatcttcaaaaacaccctgcttgctgcaagaccctcctgcgcagtagagtacaagcactttctgcttcaaagatttctcaaagtttggagcctgagatagatgtgcattgcatgcatgtactactcatgcattgctaaccaccagaaccagattgcacagaaattttagcggcacaactactcatgcattgttaaccattttcctgctgaagtgacaacaaaatgtatgcaaaaccctgtaggatcttggaggtcaagggagcacgagagactgaagcaacaaacgcaatgaagtgtattactgatcaatgagtactacgtagtagtgaaactgaagtagccatggttggccagatcggatgcatggtggcgatgcgcctttcagcttgctgtctgccatcactcatattcactcttgctgatgatcttagcagctcattctaatggagaactctgcagggcaaatggccatttccttttacctctttgctgcatcttttttgggtgtaaaagggaattttgatctctagtttttgggtaatggtcgtcgtcgggtagatgggtggttccagtgtagtcaaattaactccgctgcgcctctgatgttttgtattggaagggccagtaaaaatgtatttttccccacatggtgtggtcctagcttagcttttgtacgtgttgtttagctgttcccatgcttgtctgcttccgccacctccgctctctcccccactttccctatgtacaaaaatgcttgtaatctagtagtagctagcaattcaagctttcagttcaatgaagcccatttcaacgtt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069915.1 RefSeq:Os09g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

Os09g0459200

2014-06-10T07:53:59Z

Yanyangtian: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches.
Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent
of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.SG1 decreases organ elongation by decreasing cell proliferation and also decreases responses
to BRs and elongation of organs such as seeds and the internodes of rachis branches through
decreased cellular proliferation<ref name="ref1"/>

===Expression===

During vegetative growth,SG1 was preferentially expressed in the roots. During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured. In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.
SG1 encodes a novel protein that is conserved among angiosperms.SG1 does not share significant identity with any proteins of known function.
However, SG1 and related proteins comprise a family that is conserved among monocots and dicots. The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.<ref name="ref1" />

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
*National Institute of Agrobiological Sciences
*Graduate School of Science and Technology
*Tokyo University of Science
*RIKEN Advanced Science Institute

==References==
<references>
<ref name="ref1">Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al. short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os09g0459200|
Description = Conserved hypothetical protein|
Version = NM_001069915.1 GI:115479572 GeneID:4347276|
Length = 1474 bp|
Definition = Oryza sativa Japonica Group Os09g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18004651..18006124|
CDS = 18004776..18005216,18005552..18005584|
GCID = <gbrowseImage1>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggatcttggaggtcaagggagcacgagagactga</cdnaseq>|
AA = <aaseq>MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAV RAPGDADFEFSVGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTD SRHGRVPRAPNIRWKEFLGLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD</aaseq>|
DNA = <dnaseqindica>126..566#902..934#attctccatagcttggccaccgtagtaaagccggcgagctaattctagttctagccagctacacgagatcatcgctgtgacgggcggggcattgagagggcgcgtgtgccggccggggtcgatgcatggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggtaataacaagctcactgtttcttgcgccatgaatgcactctgctacagctctgcattgtcccattttgcttgtcgcattgcaacatttttcgaatcttcaaaaacaccctgcttgctgcaagaccctcctgcgcagtagagtacaagcactttctgcttcaaagatttctcaaagtttggagcctgagatagatgtgcattgcatgcatgtactactcatgcattgctaaccaccagaaccagattgcacagaaattttagcggcacaactactcatgcattgttaaccattttcctgctgaagtgacaacaaaatgtatgcaaaaccctgtaggatcttggaggtcaagggagcacgagagactgaagcaacaaacgcaatgaagtgtattactgatcaatgagtactacgtagtagtgaaactgaagtagccatggttggccagatcggatgcatggtggcgatgcgcctttcagcttgctgtctgccatcactcatattcactcttgctgatgatcttagcagctcattctaatggagaactctgcagggcaaatggccatttccttttacctctttgctgcatcttttttgggtgtaaaagggaattttgatctctagtttttgggtaatggtcgtcgtcgggtagatgggtggttccagtgtagtcaaattaactccgctgcgcctctgatgttttgtattggaagggccagtaaaaatgtatttttccccacatggtgtggtcctagcttagcttttgtacgtgttgtttagctgttcccatgcttgtctgcttccgccacctccgctctctcccccactttccctatgtacaaaaatgcttgtaatctagtagtagctagcaattcaagctttcagttcaatgaagcccatttcaacgtt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069915.1 RefSeq:Os09g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]

2014-06-10T06:41:16Z

Yanyangtian:

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
SHORT GRAIN1 (SG1) controls the elongation of both grains and internodes in rachis branches. Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves.SG1 decreases organ elongation by decreasing cell proliferation. SG1 decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation.
===Expression===
Please input expression information here.
During vegetative growth,SG1 was preferentially expressed in the roots. During reproductive growth, SG1 was strongly expressed in the young panicles (0.3–1 cm in length), and expression then gradually decreased as the panicles matured. In the developing panicles, SG1 was expressed most strongly in the spikelets and the basal parts of rachis and rachis branches.
SG1 encodes a novel protein that is conserved among angiosperms.SG1 does not share significant identity with any proteins of known function.
However, SG1 and related proteins comprise a family that is conserved among monocots and dicots The rice genome encodes two SG1-related proteins (Os02g0762600 and Os08g0474100) that have 49% to 53% sequence identity with SG1.
===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.
National Institute of Agrobiological Sciences
Graduate School of Science and Technology
Tokyo University of Science
RIKEN Advanced Science Institute
==References==
Please input cited references here.
<ref name="ref1"> Hitoshi Nakagawa, Atsunori Tanaka, Takanari Tanabata, Miki Ohtake, Shozo Fujioka, et al.(2012) plant physiology：short GRAIN1 decreases organ elongation and brassinosteroid response in rice.Plant Physiol 2012 158:1208-19.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os09g0459200|
Description = Conserved hypothetical protein|
Version = NM_001069915.1 GI:115479572 GeneID:4347276|
Length = 1474 bp|
Definition = Oryza sativa Japonica Group Os09g0459200, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
AP = Chromosome 9:18004651..18006124|
CDS = 18004776..18005216,18005552..18005584|
GCID = <gbrowseImage1>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008402:18004651..18006124
source=RiceChromosome09
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggatcttggaggtcaagggagcacgagagactga</cdnaseq>|
AA = <aaseq>MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAV RAPGDADFEFSVGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTD SRHGRVPRAPNIRWKEFLGLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD</aaseq>|
DNA = <dnaseqindica>126..566#902..934#attctccatagcttggccaccgtagtaaagccggcgagctaattctagttctagccagctacacgagatcatcgctgtgacgggcggggcattgagagggcgcgtgtgccggccggggtcgatgcatggcatgtgttaacatgtacaacccggagcatcaccaccaccagtcgtcgtcgttcatggcgccgaggatatccttttccagcgacttcgcgctcgagccgccgccgccggcgcagcagcagccggcggtgcgggcgcctggggacgccgacttcgagttctccgtcggcagccacccgatgatggccgccgaccagctgatctccaagggccgcctcctgccgctccgggaggccccgcacggccacggcggcgccgacgccggcggccggccactcacgctccgcgacgagctgcgcacggacagccgccatggccgcgtcccccgcgcgcccaacattcggtggaaggagttcctcggcctcaagaaggcgcccaagaaggcccccaccgccgacgctgccgccggcgccacatcgtcgtcggccgacacccagatggtaataacaagctcactgtttcttgcgccatgaatgcactctgctacagctctgcattgtcccattttgcttgtcgcattgcaacatttttcgaatcttcaaaaacaccctgcttgctgcaagaccctcctgcgcagtagagtacaagcactttctgcttcaaagatttctcaaagtttggagcctgagatagatgtgcattgcatgcatgtactactcatgcattgctaaccaccagaaccagattgcacagaaattttagcggcacaactactcatgcattgttaaccattttcctgctgaagtgacaacaaaatgtatgcaaaaccctgtaggatcttggaggtcaagggagcacgagagactgaagcaacaaacgcaatgaagtgtattactgatcaatgagtactacgtagtagtgaaactgaagtagccatggttggccagatcggatgcatggtggcgatgcgcctttcagcttgctgtctgccatcactcatattcactcttgctgatgatcttagcagctcattctaatggagaactctgcagggcaaatggccatttccttttacctctttgctgcatcttttttgggtgtaaaagggaattttgatctctagtttttgggtaatggtcgtcgtcgggtagatgggtggttccagtgtagtcaaattaactccgctgcgcctctgatgttttgtattggaagggccagtaaaaatgtatttttccccacatggtgtggtcctagcttagcttttgtacgtgttgtttagctgttcccatgcttgtctgcttccgccacctccgctctctcccccactttccctatgtacaaaaatgcttgtaatctagtagtagctagcaattcaagctttcagttcaatgaagcccatttcaacgtt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069915.1 RefSeq:Os09g0459200]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 9]]
[[Category:Chromosome 9]]