RiceWiki - User contributions [en]

Os11g0126900

2014-05-24T04:41:19Z

Yingyingbei: /* Function */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
[[Image:finger.jpg|320px|thumb|right||'''Figure 1.'''''Difference in root growth of RCc3:OsNAC10 and GOS2:OsNAC10 plants. <ref name="ref1"/>).'']]
'''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.(finger 1)<ref name="ref1" />

===Expression===
* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 2 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 2.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 2 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 3)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 3.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 4.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 4a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 4b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T04:32:48Z

Yingyingbei: /* Annotated Information */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
[[Image:finger.jpg|320px|thumb|right||'''Figure 1.'''''Difference in root growth of RCc3:OsNAC10 and GOS2:OsNAC10 plants. <ref name="ref1"/>).'']]
'''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.(finger 2)<ref name="ref1" />

===Expression===
* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 2 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 2.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 2 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 3)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 3.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 4.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 4a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 4b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

File:Finger.jpg

2014-05-24T04:30:33Z

Yingyingbei: Difference in root growth of RCc3:OsNAC10 and GOS2:OsNAC10 plants.

Difference in root growth of RCc3:OsNAC10 and GOS2:OsNAC10 plants.

File:Finger 0.gif

2014-05-24T03:20:26Z

Yingyingbei:

Os11g0126900

2014-05-24T03:19:43Z

Yingyingbei: /* Function */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
'''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,'''''RCc3:OsNAC10''', '''GOS2:OsNAC10'''''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NT control plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the ''GOS2:OsNAC10'' plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition. Root volume, length, dry weight, and diameter of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'', and NT plants were measured after growth to the stage of reproduction. Root diameter of the RCc3:OsNAC10 plants was thicker than that of the GOS2:OsNAC10 and NT plants. The increase in root diameter of the ''RCc3:OsNAC10'' plants appears to be caused by an increase in cell number rather than cell size, as evidenced by the similar size of epidermal and exodermal cells between NT and ''RCc3:OsNAC10'' roots.<ref name="ref1" />

===Expression===
* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 3b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:45:58Z

Yingyingbei: /* References */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
'''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 3b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:41:58Z

Yingyingbei: /* Annotated Information */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
'''''OsNAC10''''' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* '''''OsNAC10''''' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of '''''OsNAC10''''' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when '''''OsNAC10''''' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, '''OsNAC10''' is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 3b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA1, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK1, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q1, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H1, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:39:56Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />The TRR, generally lying at the highly diverged C-terminal [Figure 3a (i)], can either activate or repress transcription.<ref name="ref4" />

*Regulation of NAC TFs. Expression of stress-responsive NACs may be tightly regulated by several stress-responsive cis-acting elements contained in the promoter region ( Figure 3b).<ref name="ref4" />These include the ABREs (ABA-responsive elements), DREs, LTREs (Low-temperature responsive elements), MYB (Myeloblastosis) and MYC (Myelocytomatosis) binding sites, W-Box, jasmonic acid responsive element and salicylic acid responsive element

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA1, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK1, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q1, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H1, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:31:05Z

Yingyingbei: /* References */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
<ref name="ref5">
Ernst HA1, Olsen AN, Larsen S,et al.(2004)."Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors."EMBO Rep.5(3):297–303</ref>
<ref name="ref6">
Jensen MK1, Kjaersgaard T, Nielsen MM, et al.(2010)."The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling." Biochem J.426(2):183-96</ref>
<ref name="ref7">
Chen Q1, Wang Q, Xiong L, et al.(2011)"A structural view of the conserved domain of rice stress-responsive NAC1." Protein Cell,2(1):55–63</ref>
<ref name="ref8">
Ooka H1, Satoh K, Doi K,et al.(2003)."Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."DNA Res., 10（6):239–247</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:25:31Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.(finger 3a)<ref name="ref4" />The DB ability of NAC TFs is confined to the NAC domain which can be divided into five subdomains.(A–E;Figure 3a (i))The highly conserved positively charged subdomains C and D bind to DNA, whereas subdomain A may be involved in the formation of a functional dimer, and the divergent subdomains B and E may be responsible for the functional diversity of NAC genes.<ref name="ref5" /><ref name="ref6" /><ref name="ref7" /><ref name="ref8" />

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:07:55Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|320px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region.<ref name="ref4" />

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:07:01Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|500px|'''Figure 3.'''''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:04:43Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger 3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:03:05Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:1-s2.0-S1360138512000428-gr1.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]

*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:01:59Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:01:23Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref2" />).'']]
*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T02:00:43Z

Yingyingbei: /* References */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857</ref>
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.</ref>
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:59:57Z

Yingyingbei: /* References */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
<ref name="ref4">
Puranik, S.,Sahu, PP. Srivastava,PS.,et al. (2012). "NAC proteins: regulation and role in stress tolerance." Trends Plant Sci 17(6): 369-381.
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:57:12Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
[[File:finger3.jpg|right|thumb|500px|''NAC's structure and regulation pathway (from reference <ref name="ref4" />).'']]
*Name of NAC. It derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

*Structure of NAC. NAC proteins share a well conserved N-terminal NAC domain (∼150 amino acids; aa) and a diversified C-terminal transcription regulatory (TR) region

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

File:Finger 3.jpg

2014-05-24T01:55:38Z

Yingyingbei: NAC's structure and regulation pathway

NAC's structure and regulation pathway

Os11g0126900

2014-05-24T01:42:37Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
The name of NAC derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:31:48Z

Yingyingbei: /* Evolution */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ(finger 2)<ref name="ref1" />.[[File:os.jpg|right|thumb|320px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
The name derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:30:47Z

Yingyingbei: /* Expression */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|320px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ<ref name="ref1" />.[[File:os.jpg|right|thumb|500px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
The name derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:26:03Z

Yingyingbei: /* Knowledge Extension */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|520px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ<ref name="ref1" />.[[File:os.jpg|right|thumb|500px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
The name derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' <ref name="ref2" /> and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis <ref name="ref3" />.

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:24:48Z

Yingyingbei: /* References */

Please input one-sentence summary here.

The rice ''Os11g0126900'' was reported as ''NAC'' (an acronym for ''NAM'' [No Apical Meristem], ''ATAF1-2'', and ''CUC2'' [Cup-Shaped Cotyledon]) domain gene, ''OsNAC10'',in 2010 by Korean researchers.
==Annotated Information==
===Function===
''OsNAC10'' plays important role in enhancing stress tolerance when overexpressed in rice.
In Jeong, J. S's et al. research, they constructed two types of transgenic plants,''RCc3:OsNAC10, GOS2:OsNAC10''.A phenotype evaluation of ''RCc3:OsNAC10'', ''GOS2:OsNAC10'' and NTcontrol plants revealed no major differences at the vegetative growth stage of the entire plant.Under normal conditions, the grain yield of the ''GOS2:OsNAC10'' plants remains similar to that of the NT controls. Filling rate and 1000 grain weight of the GOS2:OsNAC10 plants were markedly reduced and the reduction appeared to be balanced by the increase in numbers of panicles and total spikelets. While under the same conditions, ''RCc3:OsNAC10'' plants’ total grain weight was increased by 5% to 14% compared with the NT controls, which was due to increased numbers of filled grains and total spikelets. Under drought conditions, ''RCc3:OsNAC10'' plants’ total grain weight increased 25% to 42% compared with NT controls. In contrast, ''GOS2:OsNAC10'' plants remain similar total grain weight with NT controls under drought condition.<ref name="ref1" />

===Expression===
* ''OsNAC10'' is expressed predominantly in roots and panicles<ref name="ref1" /> (finger 1 A).[[Image:os1.jpg|520px|thumb|right||'''Figure 1.'''''Expression analyses of OsNAC10(from reference <ref name="ref1"/>).'']]

* The expression of ''OsNAC10'' is induced by drought, high salinity, and ABA but not by low temperature<ref name="ref1" />.(finger 1 B)

* 34 root-specific and 40 leaf-specific target genes were up-regulated when ''OsNAC10'' was overexpressed in transgenic plants.Transcript levels of seven root-specific target genes [''P450'', ''Zn-finger'', ''HAK5'', ''2OG-Fe(Ⅱ)'',''NCED'', ''NAC'', and ''KUP3''] were increased in transgenic roots. Expression of two leaf-specific target genes, ''LRR'' and ''Peroxidase'', was found to be OsNAC10 dependent only in GOS2:OsNAC10 leaves but not in RCc3:OsNAC10 leaves. Expression of two common target genes, ''F-box'' and ''Muts4'', was found to be OsNAC10 dependent both in roots and leaves of the GOS2:OsNAC10 plants<ref name="ref1" />.

===Evolution===
According to the phylogenic analysis of the amino acid sequences of 18 OsNAC proteins, OsNAC10 is in the subgroup Ⅰ<ref name="ref1" />.[[File:os.jpg|right|thumb|500px|'''Figure 2.''' ''Identification of stress-inducible rice NAC domain genes(from reference <ref name="ref1"/>).'']]

===Knowledge Extension===
The name derives from the three genes first described as containing the domain, no apical meristem (''NAM'') gene of ''Petunia'' (Souer et al. 1996) and the ''ATAF1'', ''ATAF2'' and ''CUC'' (cup-shaped cotyledon) genes of Arabidopsis (Aida et al. 1997).

You can also add sub-section(s) at will.

==Labs working on this gene==
* School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Korea.

* National Academy of Agricultural Science, Suwon 441–707, Korea.

* School of Agricultural Biotechnology, Seoul National University, Seoul 151–921, Korea.

* CropDesign NV, B–9052 Ghent, Belgium

==References==
<references>
<ref name="ref1">
Jeong, J. S., Kim, Y. S.,Baek, K. H.,et al. (2010). "Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions." Plant Physiol 153(1): 185-197.</ref>
<ref name="ref2">
Souer E, van Houwelingen A, Kloos D,et al. (1996)."The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries."Cell 85(2):159–170</ref>
<ref name="ref3">
Aida M, Ishida T, Fukaki H,et al. (1997)."Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant." Plant Cell 9(6):841–857
==Structured Information==
{{JaponicaGene|
GeneName = Os11g0126900|
Description = Similar to NAC domain transcription factor|
Version = NM_001072159.1 GI:115483930 GeneID:4349648|
Length = 2046 bp|
Definition = Oryza sativa Japonica Group Os11g0126900, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
AP = Chromosome 11:1215803..1217848|
CDS = 1216006..1216177,1216305..1216612,1216879..1216914|
GCID = <gbrowseImage1>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008404:1215803..1217848
source=RiceChromosome11
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgaggaatccacaagaagagcaacgacttcaattcctctga</cdnaseq>|
AA = <aaseq>MPSSGGAMPALPPGFRFHPTDEELIVHYLMNQAASVKCPVPIIA EVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL STPTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRLTGTSANSTTTTKQRRASSMTMR NPQEEQRLQFL</aaseq>|
DNA = <dnaseqindica>204..375#503..810#1077..1112#atttcaatccttcctcttccttagcttattagcttccttccttcactagtgccagttttcctcctacctaatctaagctagccaggtcgtcatcttcttccttcagctcacgctgaccaaacaccatctgttattctgtttgtttgtttttttaaaaaaaagaaaaaaaatctagctaggcgagccgattgaaggagctgagcatgccgagcagcggcggcgccatgcctgcccttccaccaggcttccgcttccaccccaccgacgaggagctcatcgttcactacctcatgaaccaggccgcctccgtcaagtgccccgtgccaatcatcgccgaggtcaacatctacaagtgcaacccatgggaccttcctggtaactaactaactaatcaccatacatatatatactatccatgtatcaattaaactcgatcaaattaatgccttcaaactgaccaaatttaactttgggctttgaaaatggatatgggatgttgcaggtaaggctttgttcggcgagaacgaatggtacttcttcagcccgagggaccgcaagtaccccaacggcgctcgccccaaccgcgccgccggctcggggtactggaaggccaccggcaccgacaagtccatcctctccactccgaccagcgacaacatcggcgtcaagaaggccctcgtcttctacaagggcaagcctcccaagggcgtcaagaccgactggatcatgcacgagtaccgtctcaccggcacatcagctaacagcaccaccaccacaaagcagcgtagagcgtcatccatgaccatgagggtgagattaattacttaactaatttagttttctcttcgtcgtacgtcttgtttgaaagctacttgttgtttggcataaagaaggagcaacgtgcatgttgctcttagttaactcagtacaaagtcaaatgagttgatgttgattgagcttgttttattcttggtatatattttattttttagaaaagggttaaagtttgcacgcttctaattattgtttactgcatttgtgattgtccatcagctggacgactgggtgctgtgcagaatccacaagaagagcaacgacttcaattcctctgaccaacacgaccaagaacccgaggaatcaaccgtcgaacagcttgaagacatccatgacaacaactcctctgaacaacctccagctccagctgacatgaacaaccaacagtcagatttccagcccatgacggcgatgagcatgagcaagtcatgctccctcaccgatctcctcaacaccatcgactgcgccgcgctctcgcagtttctcctcgacggctcatccgacgccatcgctgagcctcctgctcctcccagccccctaatatacacaacacctcatccaaattaccaaacactaaactataacattaacagcaacagcagcatgccacacgccttcgagtcacgcctagatcatcacgatggttacgttaacaattataatgttaatggcctgaggaggaagagaatgatggcgtgtagtgcaacttcctttgatgatggcagcagcagcaatgactttgtgcatgccgttgtcaagaaaccgcagctgctgccaagtgattcgaggggtagtggttttggaggaggttactgcaaccagcagctttcagagactgcgactggctttcagtttcagaacggcaatctgctgagccatccatttcctctgaacaatcatctgcagatgcagtagtaggcgtctagatcccgtttaccgatcgatctgaagagaggtgaattaatttcaacgaatgaaactacagattcagagaggaagatactgattgttccatttgtgatttattttgaggagttgcatgggcagatagacaaacagacggaattcttgatgtaaccgatgcaaggaaagattcagatttcttcctatggcattaatttgtgagtttttttttgttttcattttcatgtacaagaatgtaaattataaatggtaatatcgtgcaagctagtactcaagccaatttatatg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072159.1 RefSeq:Os11g0126900]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]

Os11g0126900

2014-05-24T01:14:54Z

Yingyingbei: /* Knowledge Extension */

Os11g0126900

2014-05-24T01:11:04Z

Yingyingbei: /* Annotated Information */

Os11g0126900

2014-05-21T08:46:20Z

Yingyingbei: /* Function */

Os11g0126900

2014-05-21T08:45:47Z

Yingyingbei: /* Function */

Os11g0126900

2014-05-21T08:41:19Z

Yingyingbei: /* Function */

Os11g0126900

2014-05-21T08:38:26Z

Yingyingbei: /* Evolution */

Os11g0126900

2014-05-21T08:38:11Z

Yingyingbei: /* Evolution */

Os11g0126900

2014-05-21T08:36:59Z

Yingyingbei: /* Evolution */

Os11g0126900

2014-05-21T08:35:22Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:34:33Z

Yingyingbei: /* Evolution */

File:Os.jpg

2014-05-21T08:32:48Z

Yingyingbei: Alignments of NAC domain sequences from 18 stress-inducible rice genes. The deduced amino acid sequences of the NAC domains from 18 genes were aligned using the ClustalW program. Identical and conserved residues are highlighted (gray). Signature motifs a

Alignments of NAC domain sequences from 18 stress-inducible rice genes. The deduced amino acid sequences of the NAC domains from 18 genes were aligned using the ClustalW program. Identical and conserved residues are highlighted (gray). Signature motifs are indicated by the boxes: Ia to Ic and IIa to IIc for subgroups I and II, respectively.

Os11g0126900

2014-05-21T08:31:34Z

Yingyingbei: /* Evolution */

Os11g0126900

2014-05-21T08:28:09Z

Yingyingbei: /* References */

Os11g0126900

2014-05-21T08:26:22Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:24:52Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:24:15Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:23:14Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:22:52Z

Yingyingbei: /* Expression */

File:Os2.jpg

2014-05-21T08:22:18Z

Yingyingbei: Regulated genes in roots and leaves of RCc3:OsNAC10 and GOS2:OsNAC10 plants under normal and stress conditions. The transcript levels of OsNAC10 and six target genes were determined by quantitative RT-PCR (using the primers listed in Supplemental Table S5

Regulated genes in roots and leaves of RCc3:OsNAC10 and GOS2:OsNAC10 plants under normal and stress conditions. The transcript levels of OsNAC10 and six target genes were determined by quantitative RT-PCR (using the primers listed in Supplemental Table S5), and those in RCc3:OsNAC10 and GOS2:OsNAC10 transgenic rice plants are presented as relative to the levels in untreated NT control roots and leaves, respectively. Data were normalized using the rice ubiquitin gene (OsUbi) transcript levels. Values are means ± sd of three independent experiments.

Os11g0126900

2014-05-21T08:21:01Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:18:55Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:15:29Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:13:34Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:09:07Z

Yingyingbei: /* Expression */

Os11g0126900

2014-05-21T08:04:43Z

Yingyingbei: /* Expression */