http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=YunXX 2026-05-26T13:28:46Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177470 2014-06-04T12:24:58Z

<p>YunXX: </p> <hr /> <div>Os06g0695800 is the gene STAR1 which is responsible for Al tolerance in rice.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|150px|Map-Based Cloning and Complementation of STAR1.]]<br /> [[File:Y_3.jpg|right|thumb|150px|STAR1 sequence, conserved motifs and star1 mutation.]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex.&lt;ref name=&quot;ref1&quot; /&gt; However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:Y_2.jpg|left|thumb|150px|Expression Analysis of STAR1and STAR2.]]<br /> [[File:Y_4.jpg|left|thumb|150px|Expression of STAR1 in different root segments.]]<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration&lt;ref name=&quot;ref1&quot; /&gt;. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters&lt;ref name=&quot;ref1&quot; /&gt;.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0119000&diff=177464 2014-06-04T12:22:27Z

<p>YunXX: </p> <hr /> <div>Os05g0119000 is the gene STAR2 which is responsible for Al tolerance in rice, and it encodes a transmembrane domain, of a bacterial-type ATP binding cassette (ABC) transporter.<br /> ==Annotated Information==<br /> ===Function===<br /> [[File:X_1.jpg|left|thumb|150px|Phylogenetic Relationship and Knockdown Assay of STAR2.]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR2 is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to TMD, respectively, and then functions as an ABC transporter protein complex&lt;ref name=&quot;ref1&quot; /&gt;. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:X_2.jpg|right|thumb|150px|Expression Analysis ofSTAR1andSTAR2.]]<br /> [[File:X_4.jpg|right|thumb|150px|Expression of STAR2 in different root segments.]]<br /> STAR2 is mainly expressed in the roots, and mRNA accumulation of STAR2 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR2 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR2, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR2 does not respond to low pH and other metals, indicating that STAR2 is specifically induced by aluminum&lt;ref name=&quot;ref1&quot; /&gt;.<br /> Expression of STAR2 alone also resulted in current change, but it lost the specificity for the preloaded substrates (UDP-Glc, UDPGlcA, and water) probably due to increased membrane permeability for all substrates.<br /> <br /> ===Evolution===<br /> [[File:X_3.jpg|left|thumb|150px|Alignment of STAR2 and ALS3.]]<br /> STAR2 is a homolog of ALS3, which is involved in Al tolerance in Arabidopsis&lt;ref name=&quot;ref2&quot; /&gt;. However, STAR2 and ALS3 differ in expression pattern and cellular localization. STAR2 is only expressed in the roots, whereas ALS3 is expressed in all organs, including roots, leaves, stems, and flowers &lt;ref name=&quot;ref2&quot; /&gt;.The expression of both STAR2 and ALS3 is induced by Al&lt;ref name=&quot;ref2&quot; /&gt;. In the roots exposed to Al, ALS3 is localized in the phloem and root tips. By contrast, STAR2 is localized in all cells excepting epidermal cells in the mature root zone.<br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> &lt;references&gt;<br /> &lt;ref name=&quot;ref1&quot;&gt;Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Larsen, P.B., Geisler, M.J.B., Jones, C.A., Williams, K.M., and Cancel, J.D.(2005). ALS3encodes a phloem-localized ABC transporter-like protein that is required for aluminum tolerance inArabidopsis.Plant J.41:353–363.&lt;/ref&gt;<br /> &lt;/references&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0119000|<br /> Description = Conserved hypothetical protein 245 family protein|<br /> Version = NM_001061014.1 GI:115461758 GeneID:4337635|<br /> Length = 1139 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0119000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:967668..968806|<br /> CDS = 967774..968631|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:967668..968806<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:967668..968806<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgatggcgagcatggcggcgctgctgcagcgtctgctggtggtggtgaatcaggtggacccgggcgcgccggggttctggcgggagttcttggtgggcatgctgaagccggtggcggcgacggcggtggtggcgatggcggtggcgctgagcttcacgcagcggctggggctcgagggcgagatgctgtacgccatggcgcgggcgttcctccagctctccgtcatcggcttcgtcctccagttcatcttcacccagaagagcgccgcctggatcctcctcgcctacctcttcatggtcaccgtcgccggctacaccgcggggcagcgcgcccgccacgtcccgcgggggaagcacatcgccgccgtctccatcctcgccggcacctccgtcaccatggccctcctcgtggcgctccgggtgttcccgttcacgccgcggtacatcatcccggtggccgggatgatggtcgggaacgcgatgacggtgaccggggtgacgatgaagaagctgagggaggacgtggggatgcagcgaggggtggtggagacggcgctggcgctgggcgcgacgccgcggcaggcgacggcgcggcaggtgaggaggtcgctggtgatcgcgctgtcgccggtgatcgacaacgccaagacggtggggctgatcgcgctgccgggcgccatgaccggcctcatcatgggcggcgcgtcgccgctggaggccatccagctgcagatcgtggtgatgaacatgctcatgggcgcttccaccgtcagcagcatcctctccacctacctctgctggccggccttcttcaccggcgccttccagctcaacgacgccgtcttcgccgccgactaa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MMASMAALLQRLLVVVNQVDPGAPGFWREFLVGMLKPVAATAVV AMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKSAAWILLAYLFMVTV AGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRYIIPVAGMMVGNA MTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIALSPVIDNAKTV GLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQ LNDAVFAAD&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;107..964#gtcgcctccctcgctcgccgcctcccccgcttccgctcgctcaccaccaccaactcctcctcgtcttcatcaacgcgctcggtcgcctcgcctcgctctggaacgcatgatggcgagcatggcggcgctgctgcagcgtctgctggtggtggtgaatcaggtggacccgggcgcgccggggttctggcgggagttcttggtgggcatgctgaagccggtggcggcgacggcggtggtggcgatggcggtggcgctgagcttcacgcagcggctggggctcgagggcgagatgctgtacgccatggcgcgggcgttcctccagctctccgtcatcggcttcgtcctccagttcatcttcacccagaagagcgccgcctggatcctcctcgcctacctcttcatggtcaccgtcgccggctacaccgcggggcagcgcgcccgccacgtcccgcgggggaagcacatcgccgccgtctccatcctcgccggcacctccgtcaccatggccctcctcgtggcgctccgggtgttcccgttcacgccgcggtacatcatcccggtggccgggatgatggtcgggaacgcgatgacggtgaccggggtgacgatgaagaagctgagggaggacgtggggatgcagcgaggggtggtggagacggcgctggcgctgggcgcgacgccgcggcaggcgacggcgcggcaggtgaggaggtcgctggtgatcgcgctgtcgccggtgatcgacaacgccaagacggtggggctgatcgcgctgccgggcgccatgaccggcctcatcatgggcggcgcgtcgccgctggaggccatccagctgcagatcgtggtgatgaacatgctcatgggcgcttccaccgtcagcagcatcctctccacctacctctgctggccggccttcttcaccggcgccttccagctcaacgacgccgtcttcgccgccgactaatcttccctcttccacaacaccttgcattttgattcattatggattactgcttagtgattagtagtagtagtaattagttgttgagtacttacttagtaggacgagagagaaagtaagagtgtgtatgtcttgaggttaatttcttcttccataataaatcatgtgttgatgactt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061014.1 RefSeq:Os05g0119000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0119000&diff=177462 2014-06-04T12:20:30Z

<p>YunXX: </p> <hr /> <div>Os05g0119000 is the gene STAR2 which is responsible for Al tolerance in rice, and it encodes a transmembrane domain, of a bacterial-type ATP binding cassette (ABC) transporter.<br /> ==Annotated Information==<br /> ===Function===<br /> [[File:X_1.jpg|left|thumb|150px|Phylogenetic Relationship and Knockdown Assay of STAR2.]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR2 is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to TMD, respectively, and then functions as an ABC transporter protein complex&lt;ref name=&quot;ref1&quot; /&gt;. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:X_2.jpg|right|thumb|150px|Expression Analysis ofSTAR1andSTAR2.]]<br /> [[File:X_4.jpg|right|thumb|150px|Expression of STAR2 in different root segments.]]<br /> STAR2 is mainly expressed in the roots, and mRNA accumulation of STAR2 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR2 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR2, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR2 does not respond to low pH and other metals, indicating that STAR2 is specifically induced by aluminum&lt;ref name=&quot;ref1&quot; /&gt;.<br /> Expression of STAR2 alone also resulted in current change, but it lost the specificity for the preloaded substrates (UDP-Glc, UDPGlcA, and water) probably due to increased membrane permeability for all substrates.<br /> <br /> ===Evolution===<br /> [[File:X_3.jpg|right|thumb|150px|Alignment of STAR2 and ALS3.]]<br /> STAR2 is a homolog of ALS3, which is involved in Al tolerance in Arabidopsis&lt;ref name=&quot;ref2&quot; /&gt;. However, STAR2 and ALS3 differ in expression pattern and cellular localization. STAR2 is only expressed in the roots, whereas ALS3 is expressed in all organs, including roots, leaves, stems, and flowers &lt;ref name=&quot;ref2&quot; /&gt;.The expression of both STAR2 and ALS3 is induced by Al&lt;ref name=&quot;ref2&quot; /&gt;. In the roots exposed to Al, ALS3 is localized in the phloem and root tips. By contrast, STAR2 is localized in all cells excepting epidermal cells in the mature root zone.<br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> &lt;ref name=&quot;ref1&quot;&gt;Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.&lt;/ref&gt;<br /> &lt;ref name=&quot;ref2&quot;&gt;Larsen, P.B., Geisler, M.J.B., Jones, C.A., Williams, K.M., and Cancel, J.D.(2005). ALS3encodes a phloem-localized ABC transporter-like protein that is required for aluminum tolerance inArabidopsis.Plant J.41:353–363.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os05g0119000|<br /> Description = Conserved hypothetical protein 245 family protein|<br /> Version = NM_001061014.1 GI:115461758 GeneID:4337635|<br /> Length = 1139 bp|<br /> Definition = Oryza sativa Japonica Group Os05g0119000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|<br /> AP = Chromosome 5:967668..968806|<br /> CDS = 967774..968631|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008398:967668..968806<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008398:967668..968806<br /> source=RiceChromosome05<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgatggcgagcatggcggcgctgctgcagcgtctgctggtggtggtgaatcaggtggacccgggcgcgccggggttctggcgggagttcttggtgggcatgctgaagccggtggcggcgacggcggtggtggcgatggcggtggcgctgagcttcacgcagcggctggggctcgagggcgagatgctgtacgccatggcgcgggcgttcctccagctctccgtcatcggcttcgtcctccagttcatcttcacccagaagagcgccgcctggatcctcctcgcctacctcttcatggtcaccgtcgccggctacaccgcggggcagcgcgcccgccacgtcccgcgggggaagcacatcgccgccgtctccatcctcgccggcacctccgtcaccatggccctcctcgtggcgctccgggtgttcccgttcacgccgcggtacatcatcccggtggccgggatgatggtcgggaacgcgatgacggtgaccggggtgacgatgaagaagctgagggaggacgtggggatgcagcgaggggtggtggagacggcgctggcgctgggcgcgacgccgcggcaggcgacggcgcggcaggtgaggaggtcgctggtgatcgcgctgtcgccggtgatcgacaacgccaagacggtggggctgatcgcgctgccgggcgccatgaccggcctcatcatgggcggcgcgtcgccgctggaggccatccagctgcagatcgtggtgatgaacatgctcatgggcgcttccaccgtcagcagcatcctctccacctacctctgctggccggccttcttcaccggcgccttccagctcaacgacgccgtcttcgccgccgactaa&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MMASMAALLQRLLVVVNQVDPGAPGFWREFLVGMLKPVAATAVV AMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKSAAWILLAYLFMVTV AGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRYIIPVAGMMVGNA MTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIALSPVIDNAKTV GLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQ LNDAVFAAD&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;107..964#gtcgcctccctcgctcgccgcctcccccgcttccgctcgctcaccaccaccaactcctcctcgtcttcatcaacgcgctcggtcgcctcgcctcgctctggaacgcatgatggcgagcatggcggcgctgctgcagcgtctgctggtggtggtgaatcaggtggacccgggcgcgccggggttctggcgggagttcttggtgggcatgctgaagccggtggcggcgacggcggtggtggcgatggcggtggcgctgagcttcacgcagcggctggggctcgagggcgagatgctgtacgccatggcgcgggcgttcctccagctctccgtcatcggcttcgtcctccagttcatcttcacccagaagagcgccgcctggatcctcctcgcctacctcttcatggtcaccgtcgccggctacaccgcggggcagcgcgcccgccacgtcccgcgggggaagcacatcgccgccgtctccatcctcgccggcacctccgtcaccatggccctcctcgtggcgctccgggtgttcccgttcacgccgcggtacatcatcccggtggccgggatgatggtcgggaacgcgatgacggtgaccggggtgacgatgaagaagctgagggaggacgtggggatgcagcgaggggtggtggagacggcgctggcgctgggcgcgacgccgcggcaggcgacggcgcggcaggtgaggaggtcgctggtgatcgcgctgtcgccggtgatcgacaacgccaagacggtggggctgatcgcgctgccgggcgccatgaccggcctcatcatgggcggcgcgtcgccgctggaggccatccagctgcagatcgtggtgatgaacatgctcatgggcgcttccaccgtcagcagcatcctctccacctacctctgctggccggccttcttcaccggcgccttccagctcaacgacgccgtcttcgccgccgactaatcttccctcttccacaacaccttgcattttgattcattatggattactgcttagtgattagtagtagtagtaattagttgttgagtacttacttagtaggacgagagagaaagtaagagtgtgtatgtcttgaggttaatttcttcttccataataaatcatgtgttgatgactt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061014.1 RefSeq:Os05g0119000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 5]]<br /> [[Category:Chromosome 5]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:X_4.jpg&diff=177451 2014-06-04T12:15:22Z

<p>YunXX: Seedlings were exposed to a solution containing 50 µM Al for six hours. The root segments were excised at 0-10 mm and 10-20 mm for RNA extraction. The expression levels of STAR1, STAR2 and Actin as an internal control were determined by quantitative RT-P</p> <hr /> <div>Seedlings were exposed to a solution containing 50 µM Al for six hours. The root segments were excised at 0-10 mm and 10-20 mm for RNA extraction. The expression levels of STAR1, STAR2 and Actin as an internal control were determined by quantitative RT-PCR. STAR2 expression levels in 10-20 mm without Al were designated as onefold, respectively. Values are means±SD (n=3).</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:X_3.jpg&diff=177450 2014-06-04T12:14:34Z

<p>YunXX: The predicted transmembrane domains are underlined.</p> <hr /> <div>The predicted transmembrane domains are underlined.</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:X_2.jpg&diff=177444 2014-06-04T12:10:56Z

<p>YunXX: (A) RT-PCR ofSTAR1, STAR2, and actin (internal standard) transcripts in the roots and shoots of wild-type rice treated with or without aluminum. (B) and(C) Time-dependent(B) and aluminum concentration- and pH-dependent(C) expression ofSTAR1andSTAR2in rice</p> <hr /> <div>(A) RT-PCR ofSTAR1, STAR2, and actin (internal standard) transcripts in the roots and shoots of wild-type rice treated with or without aluminum.<br /> (B) and(C) Time-dependent(B) and aluminum concentration- and pH-dependent(C) expression ofSTAR1andSTAR2in rice roots. One-week-old seedlings of rice (cv Koshihikari) were treated with 50mM Al, pH 4.5, for different time periods(B)or treated with various concentrations of Al at pH 4.5 or with different pHs (4.5 and 5.6) in the absence of Al for 6 h(C). The root tips (0 to 10 mm from tip) were harvested.<br /> (D) Response to different metals. Five-day-old seedlings were exposed to a 0.5 mM CaCl2solution at pH 5.6 or to a 0.5 mM CaCl2solution, pH 4.5, containing 50mMAl,30mM Cd, or 10mM La for 6 h at 258C. Entire roots were harvested. Expression levels ofSTAR1,STAR2,andActinas an internal control were determined by quantitative RT-PCR. Relative value toSTAR1orSTAR2expression levels in plants without Al treatment was shown, and values are means6SDof biological replicates (n=3)in(B) to(D).</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:X_1.jpg&diff=177441 2014-06-04T12:08:05Z

<p>YunXX: (A) Gene structure ofSTAR2. STAR2contains one exon and no introns. (B) Phylogenetic relationship of the STAR2 protein with homologs in maize,Arabidopsis, V. vinefera, P. patens, T. ethanolicus, and E. coli.The sequences used to generate the phylogeny are </p> <hr /> <div>(A) Gene structure ofSTAR2. STAR2contains one exon and no introns.<br /> (B) Phylogenetic relationship of the STAR2 protein with homologs in maize,Arabidopsis, V. vinefera, P. patens, T. ethanolicus, and E. coli.The sequences used to generate the phylogeny are presented in Supplemental Data Set 2 online. Bootstrap values from 1000 trials are indicated. The 0.1 scale shows substitution distance.<br /> (C)Relative root transcript level ofSTAR2in two independent transgenic RNAi lines, 52-4 and 97-1. Actin1was used as an internal control, and values are relative to the level ofSTAR2in the vector control.<br /> (D) Effect ofSTAR2suppression by RNAi silencing on aluminum tolerance. The seedlings (four leaves stage) were exposed to a solution without aluminum for 1 d and then to a solution with 100mM aluminum for another day. The relative root elongation (root elongation with Al/root elongation without Alx100) is shown. Data are means6SDof biological replicates (n= 6).</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177426 2014-06-04T11:35:53Z

<p>YunXX: </p> <hr /> <div>Os06g0695800 is the gene STAR1 which is responsible for Al tolerance in rice.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|150px|Map-Based Cloning and Complementation of STAR1.]]<br /> [[File:Y_3.jpg|right|thumb|150px|STAR1 sequence, conserved motifs and star1 mutation.]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:Y_2.jpg|left|thumb|150px|Expression Analysis of STAR1and STAR2.]]<br /> [[File:Y_4.jpg|left|thumb|150px|Expression of STAR1 in different root segments.]]<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177425 2014-06-04T11:33:45Z

<p>YunXX: </p> <hr /> <div>Os06g0695800 is the gene STAR1 which is responsible for Al tolerance in rice.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|150px|Map-Based Cloning and Complementation of STAR1.]]<br /> [[File:Y_3.jpg|right|thumb|150px|STAR1 sequence, conserved motifs and star1 mutation.]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:Y_2.jpg|left|thumb|150px|Expression Analysis of STAR1and STAR2.]]<br /> [[File:Y_4.jpg|left|thumb|150px|Expression of STAR1 in different root segments.]]<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> &lt;ref name=&quot;ref1&quot;&gt;Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.&lt;/ref&gt;<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177423 2014-06-04T11:27:30Z

<p>YunXX: </p> <hr /> <div>Os06g0695800 is the gene STAR1 which is responsible for Al tolerance in rice.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|150px|&quot;Map-Based Cloning and Complementation of STAR1.&quot;]]<br /> [[File:Y_3.jpg|right|thumb|150px|&quot;STAR1 sequence, conserved motifs and star1 mutation.&quot;]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:Y_2.jpg|left|thumb|150px|&quot;Expression Analysis of STAR1and STAR2.&quot;]]<br /> [[File:Y_4.jpg|left|thumb|150px|&quot;Expression of STAR1 in different root segments.&quot;]]<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_1.jpg&diff=177420 2014-06-04T11:24:55Z

<p>YunXX: uploaded a new version of &amp;quot;File:Y 1.jpg&amp;quot;: (A)Molecular mapping ofSTAR1using 716 F2 Al-sensitive mutants from astar1/Kasalath population. Molecular markers and their genetic distances in a Rice Genome Research Program (RGP) genetic map are gi</p> <hr /> <div></div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177417 2014-06-04T11:21:25Z

<p>YunXX: </p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|300px|&quot;Map-Based Cloning and Complementation of STAR1.&quot;]]<br /> [[File:Y_3.jpg|right|thumb|300px|&quot;STAR1 sequence, conserved motifs and star1 mutation.&quot;]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> [[File:Y_2.jpg|right|thumb|300px|&quot;Expression Analysis of STAR1and STAR2.&quot;]]<br /> [[File:Y_4.jpg|right|thumb|300px|&quot;Expression of STAR1 in different root segments.&quot;]]<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_4.jpg&diff=177416 2014-06-04T11:20:43Z

<p>YunXX: Seedlings were exposed to a solution containing 50 µM Al for six hours. The root segments were excised at 0-10 mm and 10-20 mm for RNA extraction. The expression levels of STAR1, STAR2 and Actin as an internal control were determined by quantitative RT-P</p> <hr /> <div>Seedlings were exposed to a solution containing 50 µM Al for six hours. The root segments were excised at 0-10 mm and 10-20 mm for RNA extraction. The expression levels of STAR1, STAR2 and Actin as an internal control were determined by quantitative RT-PCR. STAR1 and STAR2 expression levels in 10-20 mm without Al were designated as onefold, respectively. Values are means±SD (n=3).</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_3.jpg&diff=177412 2014-06-04T11:13:16Z

<p>YunXX: Yellow letters show star1 mutation position and red ones the motif of ABC transporters.</p> <hr /> <div>Yellow letters show star1 mutation position and red ones the motif of ABC transporters.</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_2.jpg&diff=177409 2014-06-04T11:10:38Z

<p>YunXX: uploaded a new version of &amp;quot;File:Y 2.jpg&amp;quot;: (A) RT-PCR ofSTAR1, STAR2, and actin (internal standard) transcripts in the roots and shoots of wild-type rice treated with or without aluminum. (B) and(C) Time-dependent(B) and aluminum concentratio</p> <hr /> <div></div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_2.jpg&diff=177408 2014-06-04T11:09:54Z

<p>YunXX: </p> <hr /> <div></div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177407 2014-06-04T11:09:24Z

<p>YunXX: </p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> [[File:Y_1.jpg|right|thumb|150px|&quot;Map-Based Cloning and Complementation of STAR1.&quot;]]<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File_talk:Y_1.jpg&diff=177403 2014-06-04T11:02:08Z

<p>YunXX: Created page with &quot;&quot;Map-Based Cloning and Complementation of STAR1(from reference&lt;ref name=&quot;ref1&quot;/&gt;).&quot; (A)Molecular mapping ofSTAR1using 716 F2 Al-sensitive mutants ...&quot;</p> <hr /> <div>[[File:Y_1.jpg|right|150px|&quot;Map-Based Cloning and Complementation of STAR1(from reference&lt;ref name=&quot;ref1&quot;/&gt;).&quot;]]<br /> (A)Molecular mapping ofSTAR1using 716 F2 Al-sensitive mutants from astar1/Kasalath population. Molecular markers and their genetic distances in a Rice Genome Research Program (RGP) genetic map are given above the vertical lines, and the numbers below the vertical lines represent recombinants between each marker and the gene. The long horizontal line interrupted by two parallel lines represents the rice chromosome 6, and overlapped horizontal lines indicate the PAC clones.STAR1was finally mapped to an 88-kb candidate region on PAC clone AP003771.<br /> (B)Candidate genes ofSTAR1. Fourteen genes were predicted to occur in the 88-kb candidate region based on the pseudomolecules annotation of the rice genome. Black boxes represent retrotransposons, a white box indicates the mutated gene, and gray boxes represent other candidate genes that lack mutations.<br /> (C)Gene structure ofSTAR1. White boxes indicate exons, and black horizontal lines represent introns. STAR1contains four exons and three introns. The position of the deletion mutation instar1caused byg-ray irradiation is indicated with a filled black triangle.<br /> (D)Phylogenetic relationship of the STAR1 protein in maize,Arabidopsis,V. vinefera(grapevine), the mossP. patens,Thermoanaerobacter ethanolicus (a thermophile), andEscherichia coli. The sequences used to generate the phylogeny are presented in Supplemental Data Set 1 online. Bootstrap values from 1000 trials are indicated. The 0.1 scale shows substitution distance.(E) and(F) Complementation test.<br /> (E) Relative root elongation (root elongation with Al/root elongation without Alx100) of two independent transgenic lines transformed withSTAR1 genomic fragment, the vector control, the wild type, andstar1grown in hydroponic conditions. The seedlings were exposed to an aluminum solution for 24 h. Data are means6SDof biological replicates (n=10).<br /> (F) Root growth on acidic soil (Andosol; pH 4.8). The seedlings were grown for 10 d.</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=File:Y_1.jpg&diff=177399 2014-06-04T10:54:30Z

<p>YunXX: </p> <hr /> <div></div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177387 2014-06-04T10:41:18Z

<p>YunXX: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Chao Feng Huang, Naoki Yamaji, Namiki Mitani, et.al. (2009) A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice. The Plant Cell, Vol. 21: 655-667.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177384 2014-06-04T10:40:18Z

<p>YunXX: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> ·Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.<br /> ·QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> ·Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177382 2014-06-04T10:39:05Z

<p>YunXX: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177379 2014-06-04T10:38:09Z

<p>YunXX: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> There is no homolog of STAR1 in the rice genome. STAR1 also showed similarity to the NBD subunit of the bacterial phosphate transporter, pstB, and the similarity to this transporter is higher than any other plant ABC transporters .<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177376 2014-06-04T10:36:21Z

<p>YunXX: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> STAR1 is mainly expressed in the roots, and mRNA accumulation of STAR1 is significantly enhanced when seedlings were exposed to aluminum. A time-course experiment showed that the expression of STAR1 was similarly induced by aluminum as early as 2h after the exposure. Furthermore, an aluminum concentration as low as 5μM triggered the expression of STAR1, and the expression level increased with increasing external aluminum concentration. The mRNA accumulation of STAR1 does not respond to low pH and other metals, indicating that STAR1 is specifically induced by aluminum.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0695800&diff=177373 2014-06-04T10:33:12Z

<p>YunXX: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> ===Evolution===<br /> Please input evolution information here.<br /> <br /> You can also add sub-section(s) at will.<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0695800|<br /> Description = ABC transporter related domain containing protein|<br /> Version = NM_001064988.1 GI:115469707 GeneID:4341938|<br /> Length = 3671 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0695800, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:29949363..29953033|<br /> CDS = 29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:29949363..29953033<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064988.1 RefSeq:Os06g0695800]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

YunXX