http://192.168.164.12:81/ricewiki/api.php?action=feedcontributions&feedformat=atom&user=Zhanglinheng 2026-10-12T05:16:34Z User contributions MediaWiki 1.30.0 https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178818 2014-06-06T04:54:09Z

<p>Zhanglinheng: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> The disease resistance protein which RPM1 translated is cytoplasmic localized receptor-like protein, it enable detection of numerous microbial effector proteins, which have been released within the host cell and have specific functions which collectively suppress defense and/or reconfigure host metabolism to nourish pathogen growth. The suite of pathogen effectors varies considerably among pathogens, with bacterial pathogens capable of delivering tens of effectors, whereas fungi and oomycetes are predicted to deliver hundreds of effectors.<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). Moreover, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> <br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> <br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Arabidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Independent deletions of a pathogen- resistance gene in Brassica and Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178817 2014-06-06T04:52:45Z

<p>Zhanglinheng: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> The disease resistance protein which RPM1 translated is cytoplasmic localized receptor-like protein, it enable detection of numerous microbial effector proteins, which have been released within the host cell and have specific functions which collectively suppress defense and/or reconfigure host metabolism to nourish pathogen growth. The suite of pathogen effectors varies considerably among pathogens, with bacterial pathogens capable of delivering tens of effectors, whereas fungi and oomycetes are predicted to deliver hundreds of effectors.<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). Moreover, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> <br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> <br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178815 2014-06-06T04:52:12Z

<p>Zhanglinheng: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> The disease resistance protein which RPM1 translated is cytoplasmic localized receptor-like protein, it enable detection of numerous microbial effector proteins, which have been released within the host cell and have specific functions which collectively suppress defense and/or reconfigure host metabolism to nourish pathogen growth. The suite of pathogen effectors varies considerably among pathogens, with bacterial pathogens capable of delivering tens of effectors, whereas fungi and oomycetes are predicted to deliver hundreds of effectors.<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> <br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> <br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178813 2014-06-06T04:50:39Z

<p>Zhanglinheng: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> The product of RPM1 is cyto- plasmic localized receptor-like protein, it enable detection of numerous microbial effector proteins, which have been released within the host cell and have specific functions which collectively suppress defense and/or reconfigure host metabolism to nourish pathogen growth. The suite of pathogen effectors varies considerably among pathogens, with bacterial pathogens capable of delivering tens of effectors, whereas fungi and oomycetes are predicted to deliver hundreds of effectors.<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> <br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> <br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178804 2014-06-06T04:45:34Z

<p>Zhanglinheng: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> <br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> <br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178802 2014-06-06T04:45:06Z

<p>Zhanglinheng: /* Labs working on this gene */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> nstitute of Population Genetics, Heinrich-Heine Universität, Düsseldorf, Germany<br /> MolecularandComputationalBiology,UniversityofSouthernCalifornia,LosAngeles,CA,USA <br /> School of Biosciences, University of Exeter, Exeter, UK<br /> SchoolofLifeSciences,UniversityofWarwick,Wellesbourne,UK<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178795 2014-06-06T04:39:04Z

<p>Zhanglinheng: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> <br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> <br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> <br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178794 2014-06-06T04:38:25Z

<p>Zhanglinheng: /* References */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> 1. Grant, M. R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., et al. (1995). Structure of the Ara- bidopsis Rpm1 gene enabling dual- specificity disease resistance. Science 269, 843–846.<br /> 2. Bisgrove, S. R., Simonich, M. T., Smith, N. M., Sattler, A., and Innes, R. W. (1994). A disease resistance gene in Arabidopsis with specificity for 2 different pathogen avirulence genes. Plant Cell 6, 927–933.<br /> 3. Mackey, D., Holt, B. F., Wiig, A., and Dangl, J. L. (2002). Rin4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743–754.<br /> 4. Grant, M. R., McDowell, J. M., Sharpe, A. G., Zabala, M. D. T., Lydiate, D. J., Dangl, J. L., et al. (1998). Inde- pendent deletions of a pathogen- resistance gene in Brassica and Ara- bidopsis. Proc. Natl. Acad. Sci. U.S.A. 95, 15843–15848.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178789 2014-06-06T04:30:40Z

<p>Zhanglinheng: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino terminal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178787 2014-06-06T04:28:40Z

<p>Zhanglinheng: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino termi- nal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178784 2014-06-06T04:27:55Z

<p>Zhanglinheng: /* Annotated Information */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino termi- nal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ===Evolution===<br /> Please input expression information here.<br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178783 2014-06-06T04:26:33Z

<p>Zhanglinheng: /* Expression */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> The bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1), encodes a classic cytoplasmic receptor-like protein that is characterized by an amino termi- nal coiled-coil domain, a central nucleotide binding (NB) site and a carboxyl terminal LRR domain. RPM1 was one of the first plant resistance genes to be molecularly described from studies of natural variation in Arabidopsis thaliana (Grant et al., 1995). More- over, RPM1 was the first example of a dual specificity R-protein, recognizing the sequence-unrelated AvrB and AvrRpm1 effector proteins derived from bacterial pathogens of soybean and Brassica species, respectively (Bisgrove et al., 1994). Actual dual specificity recognition is through effector-mediated modifications of RPM1- interacting protein 4 (RIN4) in the presence of the bacterial type III effector proteins AvrRpm1 or AvrB (Mackey et al., 2002).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178780 2014-06-06T04:24:16Z

<p>Zhanglinheng: /* Function */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> Os06g0125000 is a protein-coding gene. The protein Os06g0125000 translated share most of it's amino acid sequence(Query Cover: 99%) with one kind of plants' disease resistance protein which is coding by bacterial resistance gene Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1).<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178767 2014-06-06T04:09:31Z

<p>Zhanglinheng: </p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os06g0125000&diff=178766 2014-06-06T04:08:33Z

<p>Zhanglinheng: /* Evolution */</p> <hr /> <div>Please input one-sentence summary here.<br /> <br /> ==Annotated Information==<br /> ===Function===<br /> Please input function information here.<br /> <br /> ===Expression===<br /> Please input expression information here.<br /> <br /> The RPM1 gene was shown to have originated prior to split between the ancestors of the Brassica and Arabidopsis lineages because a single homologous copy was found at two of six homol- ogous loci in Brassica napus, a cultivated polyploid relative of A. thaliana (Grant et al., 1998). Susceptibility to bacteria expressing AvrRpm1 has previously only been observed as a complete deletion of the coding sequence, replaced by a much shorter fragment of unknown origin in susceptible A. thaliana plants, with similar but independent RPM1-deletions in two of the four rpm1-null loci of B. napus (Grant et al., 1998).<br /> <br /> ==Labs working on this gene==<br /> Please input related labs here.<br /> <br /> ==References==<br /> Please input cited references here.<br /> <br /> ==Structured Information==<br /> {{JaponicaGene|<br /> GeneName = Os06g0125000|<br /> Description = Similar to NBS-LRR disease resistance protein homologue|<br /> Version = NM_001063182.1 GI:115466095 GeneID:4339959|<br /> Length = 3904 bp|<br /> Definition = Oryza sativa Japonica Group Os06g0125000, complete gene.|<br /> Source = Oryza sativa Japonica Group<br /> <br /> ORGANISM Oryza sativa Japonica Group<br /> Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;<br /> Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP<br /> clade; Ehrhartoideae; Oryzeae; Oryza.<br /> |<br /> Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|<br /> AP = Chromosome 6:1346281..1350184|<br /> CDS = 1346281..1349188,1350069..1350184|<br /> GCID = &lt;gbrowseImage1&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage1&gt;|<br /> GSID = &lt;gbrowseImage2&gt;<br /> name=NC_008399:1346281..1350184<br /> source=RiceChromosome06<br /> preset=GeneLocation<br /> &lt;/gbrowseImage2&gt;|<br /> CDNA = &lt;cdnaseq&gt;atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/cdnaseq&gt;|<br /> AA = &lt;aaseq&gt;MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP&lt;/aaseq&gt;|<br /> DNA = &lt;dnaseqindica&gt;997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga&lt;/dnaseqindica&gt;|<br /> Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063182.1 RefSeq:Os06g0125000]|<br /> }}<br /> [[Category:Genes]]<br /> [[Category:Japonica mRNA]]<br /> [[Category:Oryza Sativa Japonica Group]]<br /> [[Category:Japonica Genes]]<br /> [[Category:Japonica Chromosome 6]]<br /> [[Category:Chromosome 6]]</div>

Zhanglinheng