RiceWiki - User contributions [en]

Os03g0854500

2014-06-10T01:13:04Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.
A total of 9 different cis-acting elements commonly existed in the promoters of OsHsfs. Seven of these cis-acting elements were related to stress responses. Two cis-acting elements with the highest frequency were G-box/Sp1 and abscisic acid (ABA) response element (ABRE). These two elements are involved in the light responsiveness and the ABA response, respectively . CCGTCC/CAT-box, LTR, and ARE/GC-motif are cis-acting elements related to meristem expression, low temperature response, and anaerobic induction. Compared with classes B and C OsHsf genes, class A genes contained more these two cis-elements, suggesting that class A genes may play different roles from classes B and C genes.In addition to these two elements, other cis-elements occurred at a similar frequency among the promoters of these three classes.

===Expression===
Please input expression information here.
Digital Northern analysis showed that OsHsfs were expressed constitutively. The expressions of these OsHsfs in response to heat stress and oxidative stress differed among the members of the gene family. Promoter analysis identified a number of stress-related cis-elements in the promoter regions of these OsHsfs. No significant correlation, however, was found between the heat-shock responses of genes and their cis-elements.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.
Most proteins fixed their positions in the different phylogenetic trees, a few Hsfs changed their positions.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Wang et al.Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T16:07:41Z

Zhangsha: /* Evolution */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.

===Expression===
Please input expression information here.
Digital Northern analysis showed that OsHsfs were expressed constitutively. The expressions of these OsHsfs in response to heat stress and oxidative stress differed among the members of the gene family. Promoter analysis identified a number of stress-related cis-elements in the promoter regions of these OsHsfs. No significant correlation, however, was found between the heat-shock responses of genes and their cis-elements.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.
Most proteins fixed their positions in the different phylogenetic trees, a few Hsfs changed their positions.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Wang et al.Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T15:59:02Z

Zhangsha: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.

===Expression===
Please input expression information here.
Digital Northern analysis showed that OsHsfs were expressed constitutively. The expressions of these OsHsfs in response to heat stress and oxidative stress differed among the members of the gene family. Promoter analysis identified a number of stress-related cis-elements in the promoter regions of these OsHsfs. No significant correlation, however, was found between the heat-shock responses of genes and their cis-elements.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Wang et al.Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T15:56:21Z

Zhangsha: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.

===Expression===
Please input expression information here.
Digital Northern analysis showed that OsHsfs were expressed constitutively. The expressions of these OsHsfs in response to heat stress and oxidative stress differed among the members of the gene family. Promoter analysis identified a number of stress-related cis-elements in the
promoter regions of these OsHsfs. No significant correlation, however, was found between the heat-shock responses of genes and their cis-elements.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Wang et al.Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T15:49:37Z

Zhangsha: /* References */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Wang et al.Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T11:06:31Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

Structure

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T11:05:54Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator,indica and japonica genome has at least 25 genes of Hsf. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:56:41Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Function

Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:56:26Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Function
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs conclude a conserved DNA N terminal binding domain located near the DBD and a hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:53:22Z

Zhangsha: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs a conserved DNA N terminal binding domain located near the DBD and hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry.
College of Life Science.
Zhejiang University.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:52:17Z

Zhangsha: /* Labs working on this gene */

Please input one-sentence summary here.

==Annotated Information==
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs a conserved DNA N terminal binding domain located near the DBD and hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
State Key Laboratory of Plant Physiology and Biochemistry,
College of Life Science
Zhejiang University

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:47:47Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

OsHsfs a conserved DNA N terminal binding domain located near the DBD and hydrophobic residues HR-A / B, near the HR-A / B structure has a nuclear localization signal NLS. In addition OsHsfA7 and B, C are two types of small molecules Hsf, in all other OsHsfA a C-terminal leucine-rich nuclear export signal NES. Only OsHsfA with the C-terminal activation domain CTAD, which indicates that only OsHsfA can self activate. By protein sequence alignment, the distance HR-A and HR-B domain of domains between the ABC divided into three OsHsfs. Including 13 OsHsfAs, 8 个 OsHsfBs and 4 OsHsfCs

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:45:55Z

Zhangsha: /* References */

Please input one-sentence summary here.

==Annotated Information==
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Identification and expression analysis of OsHsfs in rice,Journal of Zhejiang University SCIENCE B, 2009, 10(4): 291-300

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os03g0854500

2014-06-09T10:44:46Z

Zhangsha: /* Function */

Please input one-sentence summary here.

==Annotated Information==
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os03g0854500|
Description = Similar to Heat shock transcription factor 31 (Fragment)|
Version = NM_001058473.1 GI:115456674 GeneID:4334826|
Length = 3436 bp|
Definition = Oryza sativa Japonica Group Os03g0854500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
AP = Chromosome 3:36839862..36843297|
CDS = 36839986..36840273,36841660..36842892|
GCID = <gbrowseImage1>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008396:36839862..36843297
source=RiceChromosome03
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq>|
AA = <aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq>|
DNA = <dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058473.1 RefSeq:Os03g0854500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 3]]
[[Category:Chromosome 3]]

Os05g0442400

2014-06-08T11:17:40Z

Zhangsha: /* Annotated Information */

Please input one-sentence summary here.

==Annotated Information==

==Function==
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

===Expression===
Please input evolution information here.
Rice seedling endogenous Os05g0442400 gene expression may be mainly in the roots,with the continuation of the rice germ , the rice husk expression region of rice endogenous Os05g0442400 gene increases from top to bottom , and reach the maximum expression of the area after heading.

===Evolution===
Please input evolution information here.
You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.
宋亚娥,张红梅,李建粤.水稻Os05g0442400基因启动子分析以及由Os05g0442400基因启动子引导GUS报告基因在转基因水稻中的表达.Journal of Shanghai Normal University(Natural Sciences).2013,42(2):186-191.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0442400

2014-06-08T11:09:30Z

Zhangsha: /* Function */

Please input one-sentence summary here.

==Annotated Information==
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.
宋亚娥,张红梅,李建粤.水稻Os05g0442400基因启动子分析以及由Os05g0442400基因启动子引导GUS报告基因在转基因水稻中的表达.Journal of Shanghai Normal University(Natural Sciences).2013,42(2):186-191.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0442400

2014-06-08T11:08:22Z

Zhangsha: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

Rice seedling endogenous Os05g0442400 gene expression may be mainly in the roots,with the continuation of the rice germ , the rice husk expression region of rice endogenous Os05g0442400 gene increases from top to bottom , and reach the maximum expression of the area after heading .

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.
宋亚娥,张红梅,李建粤.水稻Os05g0442400基因启动子分析以及由Os05g0442400基因启动子引导GUS报告基因在转基因水稻中的表达.Journal of Shanghai Normal University(Natural Sciences).2013,42(2):186-191.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0442400

2014-06-08T10:52:21Z

Zhangsha: /* References */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

===Expression===
Please input expression information here.
Rice seedling endogenous Os05g0442400 gene expression may be mainly in the roots,with the continuation of the rice germ , the rice husk expression region of rice endogenous Os05g0442400 gene increases from top to bottom , and reach the maximum expression of the area after heading .

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.
宋亚娥,张红梅,李建粤.水稻Os05g0442400基因启动子分析以及由Os05g0442400基因启动子引导GUS报告基因在转基因水稻中的表达.Journal of Shanghai Normal University(Natural Sciences).2013,42(2):186-191.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0442400

2014-06-08T10:46:18Z

Zhangsha: /* Expression */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

===Expression===
Please input expression information here.
Rice seedling endogenous Os05g0442400 gene expression may be mainly in the roots,with the continuation of the rice germ , the rice husk expression region of rice endogenous Os05g0442400 gene increases from top to bottom , and reach the maximum expression of the area after heading .

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]

Os05g0442400

2014-06-08T10:45:56Z

Zhangsha: /* Function */

Please input one-sentence summary here.

==Annotated Information==
===Function===
Please input function information here.
In 1500bp upstream of the ATG start codon region，in addition to the basic core promoter acting element,there are some plants resist acting element processes related to abiotic stress , abscisic acid response elements , the light -inducible promoter acting elements , pathogens inducing factor acting elements , as well as root-specific binding sites.

===Expression===
Please input expression information here.

===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
Please input related labs here.

==References==
Please input cited references here.

==Structured Information==
{{JaponicaGene|
GeneName = Os05g0442400|
Description = Similar to MybSt1|
Version = NM_001062206.1 GI:115464142 GeneID:4338925|
Length = 1198 bp|
Definition = Oryza sativa Japonica Group Os05g0442400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
AP = Chromosome 5:21699994..21701191|
CDS = 21700263..21700449,21700718..21701079|
GCID = <gbrowseImage1>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008398:21699994..21701191
source=RiceChromosome05
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatga</cdnaseq>|
AA = <aaseq>MAFYLGSMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESALVAFP EHTHNRWALVASRLPGRSAHEVWEHYQVLVDDVDLIERGMVASPGCWDDDNNSAGHGR GSGGDERRRGVPWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKFFI RQANASSRGDSKRKSIHDITAP</aaseq>|
DNA = <dnaseqindica>743..929#113..474#agatccaaggctatctaagcaccggcatttgcatacagccgcctaagcaaagagcacagcaagtatacgcgaatctgagtgtgtgagagagactagtagcacagacgaaggtatggcgttctacctcggcagcatgggtggctcgccatcgtcatggggggtggcggaggtgccggtgccgagcagcaggccgtggagcaaggcggaggacaaggtgttcgagagcgcgctcgtggcgttcccggagcacacgcacaaccggtgggcgctcgtcgcgtcgcggctcccggggcgctcggcgcacgaggtttgggaacactaccaggtgctcgtggacgatgtcgacctcatcgagcgtggcatggttgcgtccccgggctgctgggacgacgacaacaacagcgccggccacggccgtggcagtggtggggatgagcgtcgtcgcggcgtgccctggactgaggaggagcacaggtatgtgtccaatacgtgccatcaaatcccggttctattccatgttatttttcattttttctgttattttcggtgcgctctttgagatcctaggtattattatattgttcttttcacatcggattacttccctggcccacatcacctgtctcaccaacacgcaggccctagatttccctatagcaacagtaccttgcactacacgtctactatatcgagttacggctaatttcctctttctctctttttctattattattatgaataggctatttcttgaagggctagagaaatatgggcgtggcgactggcgcaacatctcgcgctggtcggtgaagacgcggactccgacgcaagtggcgagccatgcgcagaagttcttcatccgacaggccaacgccagcagccgtggcgactccaagcgtaagagcatccacgacatcactgccccatgatgtgtggtccgatcgaggatatgcattatgatccggtccagtctaggtttagttgtatttccatcaattccaactagctttcaaccccatttcaaagaggagagaacgaagggagtttagtcgtcggccctccctgttagttcctctctctgtgttgtgtaaaatatagctaggcaatagctaaaactaagcttggctggaacctgagatcaattgttgtgatactagtttgtgtacttgtcaaataatatttgtatccgtttaatttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062206.1 RefSeq:Os05g0442400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 5]]
[[Category:Chromosome 5]]