RiceWiki - User contributions [en]

RiceWiki:Summary

2025-11-25T03:02:02Z

Zoud:

'''RiceWiki''', a project of [https://ngdc.cncb.ac.cn/ic4r/ '''IC4R''']''' (Information Commmons for Rice)''' as well as a component of [https://ngdc.cncb.ac.cn/sciencewikis/ '''ScienceWikis'''], is '''a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice''', viz., '''a community-curated resource of rice knowledge'''. Unlike conventional biological databases based on expert curation, RiceWiki '''harnesses collective intelligence''' to collect, edit and annotate information about rice, '''quantifies users' contributions''' in each annotated gene and '''provides explicit authorship''' for each contributor to encourage more participation from the whole scientific community. '''''[[RiceWiki:Joining|Welcome to join us !]]'''''

Main Page

2025-11-25T02:37:44Z

Zoud:

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{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
<div style="padding:0em; font-size:100%">[[:Category:Genes |86,216]] rice genes inside</div>
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>

|style="width:18%;|
*<span class=plainlinks>[[Special:CuratedGenes|'''Genes''']]</span>
*[[RiceWiki:Omics Knowledge Portal for Rice|'''Omics Knowledge''']]
|style="width:18%;|
*[[Special:BLAST|'''BLAST''']]
*[[RiceWiki:Templates|'''Templates''']]
|style="width:18%;|
*[# '''Genome Browser''']
*[http://ngdc.cncb.ac.cn/databasecommons/search?term=Oryza%20sativa '''Databases''']
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<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div>
<div style="padding:0.5em 0.5em;">{{:RiceWiki:Summary}}</div>
<div style="padding:0.2em 0.5em;text-align:center">''Nothing great is ever accomplished in isolation. – Yo-Yo Ma''</div>
----
<div style="padding:0.5em 0.5em;">
{|
|style="width:70%; white-space:nowrap; color:#000"|
*More than [[Special:CuratedGenes|'''1000 manually curated genes''']] are validated as high quality in RiceWiki.
*Gene Expression Profiles retrieved from the [https://ngdc.cncb.ac.cn/red '''''IC4R-RED'''''] are integrated in RiceWiki.
*[[Special:AuthorReward |'''Quantified contributions''']] of all curators are calculated by: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
*[# '''35,717 Scientific Articles'''] associated with rice are provided for curators.
*Here, is a [[RiceWiki:TBC|'''List of genes ''']]to be curated for the next season. If you are interested, just [[RiceWiki:Joining|'''contact us''']].
|
''' |*******Recently Curated Genes*******|'''<br>''' [[Os06g0683400]]''', '''[[Os03g0125100]]''', '''[[Os01g0192000]]''' <br>''' [[Os01g0848400]]''', '''[[Os06g0107700]]''', '''[[Os10g0563600]]''' <br>''' [[Os01g0919400]]''', '''[[Os03g0180800]]''', '''[[Os12g0583700]]'''<br>''' [[Os09g0306400]]''', '''[[Os10g0553300]]''', '''[[Os09g0286400]]'''
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
<div style="width:515px;padding:0.5em 0.5em;font-size:100%;">
* '''OKP4R''': a multidisciplinary portal to share omics knowledge for rice. [[RiceWiki:Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice'''|link=RiceWiki:Omics_Knowledge_Portal_for_Rice]]
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Rice Story</div>
<div style="padding:0.5em 0.5em;font-size:100%;">
*As an important food
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
*As a biological model
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured Research</div>

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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
<div style="padding:0.5em 0.5em;font-size:100%;">
* '''Sep 04th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf2017 The 2017 Big Data Forum for Life and Health Sciences] will be held in Beijing China from October 13th to 17th.
* '''Jun 07th, 2017''': The Upcoming Conference Note: [http://www.ibc2017.cn/ The XIX International Botanical Congress in 2017] will be held in Shenzhen China from July 10th to 13th.
* '''May 20th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/dpd The Workshop on DNA Methylation and Precision Medicine] will be held in Beijing China from June 08th to 10th.
* '''Nov 05th, 2016''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf The 2016 Big Data Forum for Life and Health Sciences] will be held in Beijing China from December 05th to 08th.
* '''Jun 22th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice]] was launched at RiceWiki.

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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
<div style="padding:0.5em 1em;font-size:100%">
'''Primary publication:'''<br>
*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
'''Related publications:'''
*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Visitor Statistics</div>
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Main Page

2025-11-25T02:36:16Z

Zoud:

__NOTITLE__
__NOTOC__
__NOEDITSECTION__

{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
<div style="padding:0em; font-size:100%">[[:Category:Genes |86,216]] rice genes inside</div>
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>

|style="width:18%;|
*<span class=plainlinks>[[Special:CuratedGenes|'''Genes''']]</span>
*[[RiceWiki:Omics Knowledge Portal for Rice|'''Omics Knowledge''']]
|style="width:18%;|
*[[Special:BLAST|'''BLAST''']]
*[[RiceWiki:Templates|'''Templates''']]
|style="width:18%;|
*[# '''Genome Browser''']
*[http://ngdc.cncb.ac.cn/databasecommons/search?term=Oryza%20sativa '''Databases''']
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"|
<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div>
<div style="padding:0.5em 0.5em;">{{:RiceWiki:Summary}}</div>
<div style="padding:0.2em 0.5em;text-align:center">''Nothing great is ever accomplished in isolation. – Yo-Yo Ma''</div>
----
<div style="padding:0.5em 0.5em;">
{|
|style="width:70%; white-space:nowrap; color:#000"|
*More than [[Special:CuratedGenes|'''1000 manually curated genes''']] are validated as high quality in RiceWiki.
*Gene Expression Profiles retrieved from the [https://ngdc.cncb.ac.cn/red '''''IC4R-RED'''''] are integrated in RiceWiki.
*[[Special:AuthorReward |'''Quantified contributions''']] of all curators are calculated by: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
*[# '''35,717 Scientific Articles'''] associated with rice are provided for curators.
*Here, is a [[RiceWiki:TBC|'''List of genes ''']]to be curated for the next season. If you are interested, just [[RiceWiki:Joining|'''contact us''']].
|
''' |*******Recently Curated Genes*******|'''<br>''' [[Os06g0683400]]''', '''[[Os03g0125100]]''', '''[[Os01g0192000]]''' <br>''' [[Os01g0848400]]''', '''[[Os06g0107700]]''', '''[[Os10g0563600]]''' <br>''' [[Os01g0919400]]''', '''[[Os03g0180800]]''', '''[[Os12g0583700]]'''<br>''' [[Os09g0306400]]''', '''[[Os10g0553300]]''', '''[[Os09g0286400]]'''
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|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:40%"|
<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
<div style="width:515px;padding:0.5em 0.5em;font-size:100%;">
* '''OKP4R''': a multidisciplinary portal to share omics knowledge for rice. [[RiceWiki:Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice'''|link=RiceWiki:Omics_Knowledge_Portal_for_Rice]]
</div>

|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #93ff93; background-color:transparent;"|
<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Rice Story</div>
<div style="padding:0.5em 0.5em;font-size:100%;">
*As an important food
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
*As a biological model
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|-

|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:40%"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured Research</div>

{|style="border:none; background-color:transparent; width:100%;"
|-style="background:transcript; color:black;" valign="top"
<center>
<html>
<div style="width: 527px; height: 300px; padding-bottom: 30px;text-align:center">
<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script>

<a href="http://tagul.com/">Created with Tagul.com</a>
</div>
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|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
<div style="padding:0.5em 0.5em;font-size:100%;">
* '''Sep 04th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf2017 The 2017 Big Data Forum for Life and Health Sciences] will be held in Beijing China from October 13th to 17th.
* '''Jun 07th, 2017''': The Upcoming Conference Note: [http://www.ibc2017.cn/ The XIX International Botanical Congress in 2017] will be held in Shenzhen China from July 10th to 13th.
* '''May 20th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/dpd The Workshop on DNA Methylation and Precision Medicine] will be held in Beijing China from June 08th to 10th.
* '''Nov 05th, 2016''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf The 2016 Big Data Forum for Life and Health Sciences] will be held in Beijing China from December 05th to 08th.
* '''Jun 22th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice]] was launched at RiceWiki.

</div>
|}

{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
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|valign="top" style="border:1px solid #66B3FF; background-color:transparent; width:65%"|
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
<div style="padding:0.5em 1em;font-size:100%">
'''Primary publication:'''<br>
*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
'''Related publications:'''
*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
</div>


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Os04g0475600

2014-05-28T01:33:08Z

Zoud:

This gene named dioxygenase for auxin oxidation gene or 2-oxoglutarate-dependent-Fe (II) dioxygenase.Its gene symbol is DAO.This gene code 2-oxoglutarate-dependent-Fe (II) dioxygenase which is essential for anther dehiscence, pollen fertility, and seed initiation in rice.In vitro recombination,the gene DAO make active IAA into no biological activity of 2 - indole 3 acetic oxide. Rice mutant lines lacking a functional DAO
display increased levels of free IAA in anthers and ovaries.

===Expression===
The identification of the rice dioxygenase for auxin oxidation (DAO) gene, which encodes a 2-oxoglutarate-dependent-Fe (II) (2OGFe (II))dioxygenase responsible for catalyzing the irreversible oxidation of IAA to OxIAA and essential for plant reproductive development.Sequence and phylogenetic analysis showed that DAO is a single copy gene in rice that is predicted to encode a 2OG-Fe(II) dioxygenase with a dioxygenase domain that is conserved in several classes of dioxygenase, including the GA-2 oxidase(GA2ox), GA-3 oxidase (GA3ox), and GA-20 oxidase (GA20ox).

===Function===

===Highlight===
•Rice dao mutants contain increased levels of free IAA in anthers and ovaries

•dao mutants are defective in anther dehiscence, pollen grains, and seed development

•DAO encodes a 2-oxoglutarate-dependent-Fe (II) dioxygenase

•DAO catalyzes the conversion of active IAA into biologically inactive OxIAA

===Evolution===
Indole-3-acetic acid (IAA), the natural auxin in plants, regulates many aspects of plant growth and development. Extensive analyses have elucidated the components of auxin biosynthesis, transport, and signaling, but the physiological roles and molecular mechanisms of auxin degradation remain elusive. Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice. Rice mutant lines lacking a functional DAO display increased levels of free IAA in anthers and ovaries. Furthermore, exogenous application of IAA or overexpression of the auxin biosynthesis gene OsYUCCA1 phenocopies the dao mutants. We show that recombinant DAO converts the active IAA into biologically inactive 2-oxoindole-3-acetic acid (OxIAA) in vitro. Collectively, these data support a key role of DAO in auxin catabolism and maintenance of auxin homeostasis central to plant reproductive development.

This gene is belong to oryza sativa and it is one of the world's oldest crop specise.In a heavy huge scale study,US researchers have thought oryza sativa orginated in China.As soon as 800 years ago appear in the Yangtze basin China.This gene is on the fourth chromsome in the rice.

==Labs working on this gene==

Shenyang Institute of Aeronautical Engineering, Feng-t’ien, Liaoning, China

Climate Stress Laboratory Janet P. Slovin

Horticultural Crops Quality Laboratory Jerry D. Cohen

United States Department of Agriculture, Beltsville, Maryland

==References==

[1]Spielmeyer, W., Ellis, M.H., and Chandler, P.M. (2002). Semidwarf (sd-1),‘‘green revolution’’ rice, contains a defective gibberellin 20-oxidase gene.Proc. Natl. Acad. Sci. USA 99, 9043–9048.

[2]Normanly, J., Slovin, J.P., and Cohen, J.D. (1995). Rethinking auxin biosynthesis and metabolism. Plant Physiol. 107, 323–329.

[3]Zhigang Zhao, Yunhui Zhang, Xi Liu.ect(2013). A Role for a Dioxygenase in Auxin Metabolism and Reproductive Development in Rice. Developmental Cell. 14 October 2013, 113–122.

==Structured Information==
{{JaponicaGene|
GeneName = Os04g0475600|
Description = 2OG-Fe(II) oxygenase domain containing protein|
Version = NM_001059610.1 GI:115458949 GeneID:4336150|
Length = 1939 bp|
Definition = Oryza sativa Japonica Group Os04g0475600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
AP = Chromosome 4:24194135..24196073|
CDS = 24194432..24194674,24194894..24195212,24195312..24195652|
GCID = <gbrowseImage1>
name=NC_008397:24194135..24196073
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008397:24194135..24196073
source=RiceChromosome04
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggaggagacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacggcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctccccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccggcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacgtcgacgccttctgcgcccgcctcgacgcgccgccccacgtcagggagaccgtgaaggcgtacgccgagaggatgcactcgctgatcgtggacgtcgccggcaaggtcgccgcgagcctggggctgcacggcgcctcgttccaggactggccgtgccagttccgcatgaacaggtacaactacacgcaggactccgtgggctcccccggcgtgcaggtccacacggactccggcttcctcaccgtgctccaggaggacgagtgcgttggcgggctcgaggtgctcgaccccgccgccggcgagttcgtccccgtcgaccccctccccggctcgttcgtcgtcaacgtcggcgacgtcggccaggcgtggagcaacgggaggctgcacaacgtgaagcacagggtgcagtgcgtggcggcggtgccgcgcgtgtcgatcgccatgttcctgctggcgcccaaggacgacacggtgagcgcgccgggggagctggtggacggcgagcacccgcgccggtacagggagttcaagtacgacgactaccggaggctccggctgtccaccggcgagcgcgccggcgaggcgctcgcgcgtctggcggcctga</cdnaseq>|
AA = <aaseq>MVEIPAIDLRLAGGGGGAEETARLRDACARLGCFRVSGHGVPPG LQAEMKAAVRALFDLPDDAKRRNADIIPGSGYVPPGTANPLYEAFGLCDAAAPADVDA FCARLDAPPHVRETVKAYAERMHSLIVDVAGKVAASLGLHGASFQDWPCQFRMNRYNY TQDSVGSPGVQVHTDSGFLTVLQEDECVGGLEVLDPAAGEFVPVDPLPGSFVVNVGDV GQAWSNGRLHNVKHRVQCVAAVPRVSIAMFLLAPKDDTVSAPGELVDGEHPRRYREFK YDDYRRLRLSTGERAGEALARLAA</aaseq>|
DNA = <dnaseqindica>1400..1642#862..1180#422..762#agaagcaaacactgcgatcatccgaagcaatctcaatctcacctgtccatatcgcgcacgaattcgtaaagtgcaagctagaaacatgtgtcacatgtcgtgctgatcgttcgatccaccacggtgcgagcggtgagtgtcgtgacgaagcaaaggcagaggcagcagcgggaaacggcgcccccccgtgtgtcgatcggctgtctcgccgaacagggcaaatacgccaacaaaaaacggcctcgttttcccttgctcgcacgcaccgtgtcgctcccaggcgacaagccgtggcgcgactcgccgcccccctgcgccccctcgcccccgcgcgtcgctttcacgtcgcacctctaaataccaccaccccggactcggcggcgagcccccgcgccaagaacgaaaggcgagagtgagagagatggtggagatcccggcgatcgacctgcggctggccggcggcggcggcggcgcggaggagacggcgaggctgcgcgacgcgtgcgcgcggctgggctgcttccgggtgtcggggcacggcgtgccgccggggctccaggccgagatgaaggccgcggtgcgcgcgctcttcgacctccccgacgacgccaagcgccgcaacgccgacatcatcccgggcagcggctacgtcccgcccggcacagccaacccgctctacgaggccttcggcctctgcgacgccgccgcccccgccgacgtcgacgccttctgcgcccgcctcgacgcgccgccccacgtcaggtgaccatttactgatcttgcaccgccccccaatcccaattggaattgcgattttggtctcaagaaacggatgaattaatccgggcccggatgaagcagggagaccgtgaaggcgtacgccgagaggatgcactcgctgatcgtggacgtcgccggcaaggtcgccgcgagcctggggctgcacggcgcctcgttccaggactggccgtgccagttccgcatgaacaggtacaactacacgcaggactccgtgggctcccccggcgtgcaggtccacacggactccggcttcctcaccgtgctccaggaggacgagtgcgttggcgggctcgaggtgctcgaccccgccgccggcgagttcgtccccgtcgaccccctccccggctcgttcgtcgtcaacgtcggcgacgtcggccaggttcacaaacatatcatcaaaatatattcaatttaattactaaaattaataagatatatccctccgtcggtgctgtaggtgttgttatttttctataaatttgattcaacctaaaaatattaagaaaatatcaaacgacttataattcgagacgaagggagtaactactattccatttttcgcgggaatttctcaccgaatctcggtgtgttgtctcaggcgtggagcaacgggaggctgcacaacgtgaagcacagggtgcagtgcgtggcggcggtgccgcgcgtgtcgatcgccatgttcctgctggcgcccaaggacgacacggtgagcgcgccgggggagctggtggacggcgagcacccgcgccggtacagggagttcaagtacgacgactaccggaggctccggctgtccaccggcgagcgcgccggcgaggcgctcgcgcgtctggcggcctgacacctggccacggtccattgtcgcgaccgtttattacgcggagtgctcactgctgactagaatgtccattaggcctccctgtatggccgtgtcgattctgaacaataaaatcttcgacgtacgacagtgaaaaaaatttgtaaaggatgctgaggggatgggaattttaggggttaataagtcttttgtttggctggaggagatgatgagttgtaggaataactggaaggtggagtttgtgagtaaattcccacctttttaatatagaggactataattgggaggaaagtccctttc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059610.1 RefSeq:Os04g0475600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 4]]
[[Category:Chromosome 4]]

Main Page

2014-05-27T18:18:38Z

Zoud:

__NOTITLE__
__NOTOC__
__NOEDITSECTION__

{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
<div style="padding:0em; font-size:100%">[[:Category:Genes |66,390]] rice genes inside</div>
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>

|style="width:18%;|
*<span class=plainlinks>[[:Category:Genes|Genes]]</span>
*[[RiceWiki:GeneFamilies|Gene Families]]
*[[RiceWiki:Chromosomes|Chromosomes]]
|style="width:18%;|
*[[RiceWiki:Databases|Databases]]
*[[Special:ListUsers|Registered Users]]
*<span class=plainlinks>[[Special:AuthorReward| Contributions]]</span>
|style="width:18%;|
*[[RiceWiki:Genome_Browser|Genome Browser]]
*[[RiceWiki:Templates|Templates]]
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"|
<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div>
<div style="padding:0.5em 0.5em;">{{:RiceWiki:Summary}}</div>
<div style="padding:0.2em 0.5em;text-align:center">''Nothing great is ever accomplished in isolation. – Yo-Yo Ma''</div>
----
<div style="padding:0.5em 0.5em;">
*Featured genes: [[Os01g0883800]], [[Os02g0170300]], [[Os03g0149100]], [[Os08g0162100]], [[Os09g0114500]], [[Os10g0405500]]
*Curated genes: [[Special:CuratedGenes |a list of genes curated by the community]]
*Genes to be curated: [[RiceWiki:TBC|a list of genes to be curated]]
*Quantified contributions: [[Special:AuthorReward |a summary of quantified contributions for all contributors]]
*[[Media:CommunityCuration-RiceWiki.pptx]] [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]
</div>
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent; width:60%;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">2014年度RiceWiki群体审编（Community Curation）奖励条例</div>
<div style="padding:0.5em 0.5em;">{{:RiceWiki:2014Award}}</div>
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|-

|valign="top" style="border:1px solid #ACD6FF; background-color:transparent; width:60%;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">致全体参与者</div>
<div style="padding:0.5em 0.5em;">
*群体审编（Community Curation）是生物大数据整合和相关文献信息集成的重要方法之一（相关信息：[http://www.biocurator.org/what.shtml 国际生物审编协会]；[http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18769432/ Big data: The future of biocuration]）。
*水稻是我国最重要的经济农作物之一，其数据知识库的建立可有利推动我国水稻的科学研究与应用转化，并影响国内其它相关领域的基础研究。
*我国长期缺乏一个在国际上有一定影响力的数据库/中心，美国有NCBI，欧洲有EBI......
*但是，你们现在所作的一点一滴正在改变这个现状，我们正在朝向建立面向我国重大需求且不同于现今国际生物数据中心的方向前进！
</div>


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* 请发送电子邮件至ricewiki(AT)big.ac.cn，并提供您的注册用户名（英文）、邮件地址(确保邮箱名正确)和真实姓名。
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* 如果您确实没收到来自ricewiki(AT)big.ac.cn的邮件，请再次发送邮件联系ricewiki(AT)big.ac.cn。
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{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|-

|valign="top" style="border:1px solid #93ff93; background-color:transparent; width:30%;"|
<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Genome Overview</div>
<div style="padding:1em 0em 0em 0em; text-align:center;">[[image:RiceG.jpg]]</div>
== ==
<div style="padding:0.2em 0.5em;">
====[[:Category:Japonica Genes | ''Oryza sativa Japonica'' Group]]====
'''Chromosome'''
[[:category:Japonica Chromosome 1|'''1''']].
[[:category:Japonica Chromosome 2|'''2''']].
[[:category:Japonica Chromosome 3|'''3''']].
[[:category:Japonica Chromosome 4|'''4''']].
[[:category:Japonica Chromosome 5|'''5''']].
[[:category:Japonica Chromosome 6|'''6''']].
[[:category:Japonica Chromosome 7|'''7''']].
[[:category:Japonica Chromosome 8|'''8''']].
[[:category:Japonica Chromosome 9|'''9''']].
[[:category:Japonica Chromosome 10|'''10''']].
[[:category:Japonica Chromosome 11|'''11''']].
[[:category:Japonica Chromosome 12|'''12''']].
[[:category:Japonica_Mitochondrion|'''Mt''']].
[[:category:Japonica_Plastid|'''Pd''']]

====[[:Category:Indica Genes | ''Oryza sativa Indica'' Group]]====
'''Chromosome'''
[[:category:Indica Chromosome 1|'''1''']].
[[:category:Indica Chromosome 2|'''2''']].
[[:category:Indica Chromosome 3|'''3''']].
[[:category:Indica Chromosome 4|'''4''']].
[[:category:Indica Chromosome 5|'''5''']].
[[:category:Indica Chromosome 6|'''6''']].
[[:category:Indica Chromosome 7|'''7''']].
[[:category:Indica Chromosome 8|'''8''']].
[[:category:Indica Chromosome 9|'''9''']].
[[:category:Indica Chromosome 10|'''10''']].
[[:category:Indica Chromosome 11|'''11''']].
[[:category:Indica Chromosome 12|'''12''']]
</div>


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|valign="top" style="border:1px solid #93ff93; background-color:transparent;"|
<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
<div style="padding:0.5em 0.5em;">
[[File:Damifan.jpg|right|120px|margin: 5px|]]
*As an important food
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
*As a biological model
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
----
{|style="border:none; background-color:transparent; width:100%"
|- style="background:transcript; color:black" align="left" valign="top"
|<div style="font-size:110%; font-weight:bold;">Recent Modified Genes</div> {{RecentActivity:type=edits|count = 10}}
|<div style="font-size:110%; font-weight:bold;">Highly Accessed Genes</div> {{RecentActivity:type=visits|count = 10}}
|<div style="font-size:110%; font-weight:bold;">Most Annotated Genes</div> {{RecentActivity:type=contributes|count = 10}}
|}
|}

{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"|
<div style="background:#f4f4f4; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
<div style="padding:0.5em 0.5em;">
* [http://www.ncbi.nlm.nih.gov/pubmed/24136999 RiceWiki: a wiki-based database for community curation of rice genes] (2014) ''Nucleic Acids Research'', 42(D1),D1222-D1228.
* [http://www.ncbi.nlm.nih.gov/pubmed/23732274 AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification] (2013) ''Bioinformatics'', 29(14):1837-1839.
</div>
|}


{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"

|valign="top" style="border:1px solid #66B3FF; background-color:transparent; width:42%"|
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Joining RiceWiki</div>
<div style="padding:0.5em 1em;">
* RiceWiki allows any user to view and search but only registered users can add and edit content.
* To become a registered user, please email the RiceWiki Team at [mailto:ricewiki@big.ac.cn ricewiki@big.ac.cn] to tell us your preferred login name, real name, research interests, etc., and we will set up an account for you.
* Please also spread this news to any one who might be of interest. [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]</div>


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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">About Us</div>
<div style="padding:0.5em 1em;">Our group works in the field of [http://cbb.big.ac.cn Computational Biology and Bioinformatics] (CBB), currently with a particular focus on building biological knowledge wikis in aid of community curation of massive biological knowledge.
</div>


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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Visitor Statistics</div>
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Os02g0771400

2014-05-12T07:51:34Z

Zoud: /* References */

Protein Tyrosine Phosphatase

==Annotated Information==
===Function===
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.

===Expression===
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.

===Evolution===

AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.

===Gene Ontology Classification ===
{| class='wikitable' style="text-align:center"
|-
! | GO accession
! | Type
! | Name
! | Code
! | With
|-
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]
| | biological_process
| | cellular process
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]
| | biological_process
| | metabolic process
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]
| | molecular_function
| | hydrolase activity
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]
| | cellular_component
| | cellular_component
| | IEA
| | TAIR:AT1G05000
|-
|}

===PFAM hits===
{| class='wikitable' style="text-align:center"

|-
! | Accession
! | Name
! | Match Start
! | Match End
! | E-value
|-
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]
| | Y_phosphatase2
| | 46
| | 198
| | 9.8e-63
|-
|}
===BlastP Searches (UniRef 100)===
{| class='wikitable' style="text-align:center"

|-
! | Accession
! | %Sim
! | Length
! | Description
! | P-value
|-
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]
| | 94.12
| | 204
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ
| | 4.2e-98
|-
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]
| | 89.44
| | 161
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ
| | 2.2e-69
|-
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]
| | 89.44
| | 161
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re
| | 2.2e-69
|-
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]
| | 89.44
| | 161
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni
| | 3.6e-69
|-
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]
| | 74.77
| | 214
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 7.5e-69
|-
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]
| | 75.23
| | 214
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep
| | 7.5e-69
|-
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]
| | 75.23
| | 214
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA
| | 4.1e-68
|-
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]
| | 74.65
| | 217
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 2.9e-67
|-
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]
| | 85.29
| | 170
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum
| | 6e-67
|-
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]
| | 72.22
| | 216
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9
| | 3.3e-66
|-
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]
| | 82.72
| | 162
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini
| | 3.2e-61
|-
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]
| | 77.14
| | 175
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 2.9e-60
|-
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]
| | 86.54
| | 156
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus
| | 2.9e-60
|-
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]
| | 85.99
| | 157
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab
| | 5.9e-60
|-
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]
| | 84.18
| | 158
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ
| | 9.7e-60
|-
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]
| | 85.35
| | 157
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P
| | 1.2e-59
|-
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]
| | 82.39
| | 159
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID
| | 1.6e-59
|-
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]
| | 84.81
| | 158
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P
| | 3.3e-59
|-
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]
| | 82.5
| | 160
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL
| | 8.7e-59
|-
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]
| | 84.81
| | 158
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P
| | 8.7e-59
|-
|}

==Labs working on this gene==
*Key Laboratory of Gene Engineering of Ministry of Education
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China

==References==
<references>
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0771400|
Description = Putative tyrosine phosphatase family protein|
Version = NM_001054792.2 GI:297599967 GeneID:4330871|
Length = 3886 bp|
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:33425073..33428958|
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|
GCID = <gbrowseImage1>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

Os02g0771400

2014-05-12T07:51:00Z

Zoud: /* References */

Protein Tyrosine Phosphatase

==Annotated Information==
===Function===
OsPFA-DSP2 act as negative regulators of the pathogen response in transgenic plants.Ectopic overexpression of OsPFA-DSP2 in rice increased sensitivity to Magnaporthe grisea (M. grisea Z1 strain), inhibited the accumulation of hydrogen peroxide (H2O2) and suppressed the expression of pathogenesis-related (PR) genes after fungal infection.

===Expression===
OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus.

===Evolution===

AtPFA-DSP4,which is homologous to OsPFA-DSP2,overexpressing in transgenic Arabidopsis plants,also exhibited sensitivity to
Pseudomonas syringae pv. tomato DC3000 (Pst DC3000), reduced accumulation of H2O2 and decreased photosynthesic capacity after infection compared with Col-0.OsPFA-DSP2 and AtPFA-DSP4 act as negative regulators of the pathogen response in transgenic plants.

===Gene Ontology Classification ===
{| class='wikitable' style="text-align:center"
|-
! | GO accession
! | Type
! | Name
! | Code
! | With
|-
| rowspan="1"|GO:0009987[[http://amigo.geneontology.org/amigo/term/GO:0009987]]
| | biological_process
| | cellular process
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0008152[[http://amigo.geneontology.org/amigo/term/GO:0008152]]
| | biological_process
| | metabolic process
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0016787 [[http://amigo.geneontology.org/amigo/term/GO:0016787]]
| | molecular_function
| | hydrolase activity
| | IEA
| | TAIR:AT1G05000
|-
| rowspan="1"|GO:0005575[[http://amigo.geneontology.org/amigo/term/GO:0005575]]
| | cellular_component
| | cellular_component
| | IEA
| | TAIR:AT1G05000
|-
|}

===PFAM hits===
{| class='wikitable' style="text-align:center"

|-
! | Accession
! | Name
! | Match Start
! | Match End
! | E-value
|-
| rowspan="1"|PF03162.6 [[http://pfam.xfam.org/family/PF03162]]
| | Y_phosphatase2
| | 46
| | 198
| | 9.8e-63
|-
|}
===BlastP Searches (UniRef 100)===
{| class='wikitable' style="text-align:center"

|-
! | Accession
! | %Sim
! | Length
! | Description
! | P-value
|-
| rowspan="1"|UniRef100_Q0DX67 [[http://www.uniprot.org/uniref/UniRef100_Q0DX67]]
| | 94.12
| | 204
| | Os02g0771400 protein n=2 Tax=Oryza sativa RepID=Q0DX67_ORYSJ
| | 4.2e-98
|-
| rowspan="1"|UniRef100_Q0DDQ5 [[http://www.uniprot.org/uniref/UniRef100_Q0DDQ5]]
| | 89.44
| | 161
| | Os06g0208700 protein n=2 Tax=Oryza sativa RepID=Q0DDQ5_ORYSJ
| | 2.2e-69
|-
| rowspan="1"|UniRef100_Q6DL00 [[http://www.uniprot.org/uniref/UniRef100_Q6DL00]]
| | 89.44
| | 161
| | Dual-specificity phosphatase protein n=1 Tax=Oryza sativa Re
| | 2.2e-69
|-
| rowspan="1"|UniRef100_A3B9I2[[http://www.uniprot.org/uniref/UniRef100_A3B9I2]]
| | 89.44
| | 161
| | Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni
| | 3.6e-69
|-
| rowspan="1"|UniRef100_B6U4B4[[http://www.uniprot.org/uniref/UniRef100_B6U4B4]]
| | 74.77
| | 214
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 7.5e-69
|-
| rowspan="1"|UniRef100_F2D6J8[[http://www.uniprot.org/uniref/UniRef100_F2D6J8]]
| | 75.23
| | 214
| | Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare Rep
| | 7.5e-69
|-
| rowspan="1"|UniRef100_C4JAD1[[http://www.uniprot.org/uniref/UniRef100_C4JAD1]]
| | 75.23
| | 214
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JA
| | 4.1e-68
|-
| rowspan="1"|UniRef100_B6TUQ6[[http://www.uniprot.org/uniref/UniRef100_B6TUQ6]]
| | 74.65
| | 217
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 2.9e-67
|-
| rowspan="1"|UniRef100_C5XTH0[[http://www.uniprot.org/uniref/UniRef100_C5XTH0]]
| | 85.29
| | 170
| | Putative uncharacterized protein Sb04g034500 n=1 Tax=Sorghum
| | 6e-67
|-
| rowspan="1"|UniRef100_B4F971[[http://www.uniprot.org/uniref/UniRef100_B4F971]]
| | 72.22
| | 216
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F9
| | 3.3e-66
|-
| rowspan="1"|UniRef100_UPI00015CAEE8[[http://www.uniprot.org/uniref/UniRef100_UPI00015CAEE8]]
| | 82.72
| | 162
| | PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vini
| | 3.2e-61
|-
| rowspan="1"|UniRef100_B6TNL4[[http://www.uniprot.org/uniref/UniRef100_B6TNL4]]
| | 77.14
| | 175
| | Tyrosine specific protein phosphatase family protein n=1 Tax
| | 2.9e-60
|-
| rowspan="1"|UniRef100_B9T828[[http://www.uniprot.org/uniref/UniRef100_B9T828]]
| | 86.54
| | 156
| | Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus
| | 2.9e-60
|-
| rowspan="1"|UniRef100_Q9ZVN4[[http://www.uniprot.org/uniref/UniRef100_Q9ZVN4]]
| | 85.99
| | 157
| | Probable tyrosine-protein phosphatase At1g05000 n=2 Tax=Arab
| | 5.9e-60
|-
| rowspan="1"|UniRef100_Q6K461[[http://www.uniprot.org/uniref/UniRef100_Q6K461]]
| | 84.18
| | 158
| | Os09g0135700 protein n=2 Tax=Oryza sativa RepID=Q6K461_ORYSJ
| | 9.7e-60
|-
| rowspan="1"|UniRef100_B9IAK7[[http://www.uniprot.org/uniref/UniRef100_B9IAK7]]
| | 85.35
| | 157
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAK7_P
| | 1.2e-59
|-
| rowspan="1"|UniRef100_UPI00015CD7AE[[http://www.uniprot.org/uniref/UniRef100_UPI00015CD7AE]]
| | 82.39
| | 159
| | PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID
| | 1.6e-59
|-
| rowspan="1"|UniRef100_B9HZH6[[http://www.uniprot.org/uniref/UniRef100_B9HZH6]]
| | 84.81
| | 158
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HZH6_P
| | 3.3e-59
|-
| rowspan="1"|UniRef100_B4FLL8[[http://www.uniprot.org/uniref/UniRef100_B4FLL8]]
| | 82.5
| | 160
| | Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FL
| | 8.7e-59
|-
| rowspan="1"|UniRef100_B9N8H3[[http://www.uniprot.org/uniref/UniRef100_B9N8H3]]
| | 84.81
| | 158
| | Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N8H3_P
| | 8.7e-59
|-
|}

==Labs working on this gene==
*Key Laboratory of Gene Engineering of Ministry of Education
*State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources
*School of Life Sciences,Sun Yat-sen University, Guangzhou, People’s Republic of China

==References==
<references>
<ref>Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref>
</references>

==Structured Information==
{{JaponicaGene|
GeneName = Os02g0771400|
Description = Putative tyrosine phosphatase family protein|
Version = NM_001054792.2 GI:297599967 GeneID:4330871|
Length = 3886 bp|
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:33425073..33428958|
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|
GCID = <gbrowseImage1>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]

Os02g0771400

2014-05-12T07:48:42Z

Zoud: Undo revision 168387 by Zoud (talk)

Os02g0771400

2014-05-12T07:47:01Z

Zoud: Reverted edits by Xialin (talk) to last revision by 124.16.129.48

Please input one-sentence summary here.

==Annotated Information==
===Function===
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===Expression===
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===Evolution===
Please input evolution information here.

You can also add sub-section(s) at will.

==Labs working on this gene==
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==References==
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==Structured Information==
{{JaponicaGene|
GeneName = Os02g0771400|
Description = Putative tyrosine phosphatase family protein|
Version = NM_001054792.2 GI:297599967 GeneID:4330871|
Length = 3886 bp|
Definition = Oryza sativa Japonica Group Os02g0771400, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
AP = Chromosome 2:33425073..33428958|
CDS = 33425223..33425396,33425500..33425543,33425630..33425687,33428497..33428590,33428703..33428947<br>|
GCID = <gbrowseImage1>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008395:33425073..33428958
source=RiceChromosome02
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaa</cdnaseq>|
AA = <aaseq>MQLEISPRQRSQQQKEEEGEHQQRAGEEAVGAVFSIEPWVDAAA VLVPPLNFAEVNDGIFRSGFPAADNFAFLLSLKLRSIVYLCPEPYPEENTRFLEQNGI KLHQFGIDGSKELLVNIPEEKIREALKVILDVRNQPVLIHCKRGKHRTGCVVGCLRKL QKWCLTSVFDEYQHFAAAKARSTDQRFMELFDTSSLMHLTASQC</aaseq>|
DNA = <dnaseqindica>3563..3736#3416..3459#3272..3329#369..462#12..256#aagaggaggatatgcagctggagatttcgccgagacagaggagccagcagcagaaggaggaggaaggcgagcaccagcagcgcgccggcgaggaggcggtgggcgccgtcttcagcattgagccgtgggtggacgccgcggcggtgctggtgccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgccgacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtgagtcctatacctaggatctctttctcggccacggcgaccgtggcggcgagctcgtcgattacgtgttctgacggcggcggcgacgccttggcgtggttgatcggtgcaggtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttcggtattgacggcagcaaggtaaatgaacaagtcaaaaatcatatgcgttgagtcctttgattttctgctttattttccacggatggcaaagtcgatcttcgcatcgaattgttttttggtttttcggtcgatttggtgcgttctgcttgtggagataaataatttgcacacataatttgcaccgagaaatagcaactggtatcgcattacagtggatgcgagggttactttaggtagaacgcgctgtttacctgtttgacatgagcacgcacttgcgttttctgcgcgttgcctcgtgtcgtatggccatgagctcgttcgactactttccgttaaaaaaacatgggaactgacaactgatattgctgcttgcttcggcaaaacacttgggggcaacgcaactagggcaaacaacaactcaactagaacaaacaaaagtccctttcttgctttatctttgcccctttcagttagggcatttgcttgagtctttcaggctgaaaatgtttatcgtttttgggttttgttaacctaaattgacaaggttacgtggtgcatggtgactataaaacaccctgtttgagcaaaatgcatctagtgcgctactatttttatgttcttatttcactaattcgttttcccttctcacaaaatagtgtagaaaatctcattatggtaggagttattttttttacaatgcaaaacaacagtgtcagttaagcgggttcttgcgtcagcccagcacccatagaagattagaagttgtttacaatgctgcaaaagcgtatcttgctactggcctactgccattagcaacagtaaagcttatctttgttatgattattctggtagcgttgtgctacttttctagaagctagttcaaactgattggtagactcatggctaaggaaaatattttctatttcagcatcacgcatttcagggttaggagatttttgtctgcattatgccagtctggttctgagttttactgaatactgcaagctttaagggtaaaaaaaaaaaaagaaaacaccttaagcttaagtgatcagtgatgcagtacagcacaagttctactccctctatcaaaaaaaaaactaatcctaaatttgaatctagaaagacggagggagtagctgagaaatgatgggcttgtggagtctcctctgtgaattgggtgcctaaacaaagatcaagttgacttatgcccattattttttttaagagaacttatgtgaaaaaaaaagaggatcaagttgacttatagtataatcgcacctgtcttttaactgtcgagtgacgtctgaccagcgtaattctttcataaatttgttggccatgactttaattccgttattaaccagccacccaagattaccatttctctgtgtgccatgccatatttattctcattttactagtccttcactgaaagccattagtacggttttgtcaagctgtccatattaaaagttcatttaggcatagacgcatagtagccttggagtatgtcggtatattactccatctcgcaactttagtactcgtgtcatcgcgtggtagcatccaccgcaagtctgcaacaatgagaacatattccactgtcagttctgggttcatgaaggcatgaactgccacggcaaatggtcaaagttggtcagcgtcggcgacttaaggctgaggtcgttgcttgggttaggtattcatccctagttcatgcaaaatgacataactcattaacgtatgattaattaagttttagtttttttaaaaaaataaaattaatatgaatataaaatttaaattaactttcatatagatttcatatagatttttgttaaaaaaaacaccgttcagtaattaaaaaaatgtgcatgtgaaaatcgagtgagttaagttgggaccttcaaacaaaaaaaaactttcatcgttcattggcgattgttgctgtcgatgataaacaacacagatgtgctgaccaactttagcattcccagcaaaaaagaaatatatcgctgagtgaaaagacactgatcaggtggctgaccttactacaagtgtgtgaatggaaattagtgctcactttgacattgtctggagatgatgcttctttttcgccggactcaagctaggtgtctgaaaccactgaattacgagggtcaccggtaataattgtgtcactgctagatggattctaggatggtcactgctagatggattgtacggtggtgtttggatcaaggactaaactttagctcctgtcatatcggatgaatttagagtattaaacatagactacttataaaactaattacataaatgagagctaattcgcgtgacaaaatttttaagcctaattaatccataattagcgcatgtttactgtagcatcacataggctaattatgaattaattaggtttaatagattcgtctcgcgaattagtccggggtcatataataggttttattaatagtctatgtttaatatttataattagtgtccaaacatacgatgtgatatggactaaaaagttttagtcccatctaaacagggtctaagcttgtttctttgttaactagaaccaataatgtagtacatacttgagtggcatgacgatatctttgcatctgaactttcgataaaggtgaaccttatcagttaccgcattagcctgaaactgtgaaacaaattaaaacatccttctattgctataccatatcatcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacaggagctgcttgtaaacatccctgaagaaaaaatccgagaagcactcaaagttattcttggtatctgcctctacaaagatatatccaatgtctcaaaatttcatcacactatctgtatctaactcttatcgttttgatcaattcagacgtaaggaatcaaccggtgctcatccactgcaagagaggcaaggtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcagcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaacttcagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagattcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaaccgaaccgaatgttttttcatatccggtcccgatctgtaaccatgctgtctacctagcaacatattgtaatgttgctattgaaacaattcatcagagaataatgttagaaccatcattatcctcataaaagtatccatcaaaatacaagg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054792.2 RefSeq:Os02g0771400]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 2]]
[[Category:Chromosome 2]]