AP2/ERF - Revision history

Xysj2012 at 06:42, 13 July 2013

2013-07-13T06:42:21Z

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2013-07-13T06:41:45Z

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‎Indica Group

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‎Japonica Group

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Xysj2012 at 06:40, 13 July 2013

2013-07-13T06:40:16Z

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Xysj2012: Created page with "==Brief Introduction== * The AP2/ERF superfamily,one of the largest groups of transcription factors in plants, is defined by the AP2/ERF domain, which consists of about 60 to ..."

2013-07-13T06:39:46Z

Created page with "==Brief Introduction== * The AP2/ERF superfamily,one of the largest groups of transcription factors in plants, is defined by the AP2/ERF domain, which consists of about 60 to ..."

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==Brief Introduction==
* The AP2/ERF superfamily,one of the largest groups of transcription factors in plants, is defined by the AP2/ERF domain, which consists of about 60 to 70 amino acid residues and is involved in DNA binding<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />.
 [[File:BGIOSGA010867.png|center|thumb|1000px|'''Figure 1.''' ''Gene structure of BGIOSGA010867'' (AP2)]]
* This superfamily can be classified into three gene families: AP2, ERF and RAV based on sequence similarities and the number of AP2/ERF domains. The AP2 family proteins contain two repeated AP2/ERF domains, the ERF family proteins contain a single AP2/ERF domain, and the RAV family proteins contain a B3 domain in addition to the single AP2/ERF domain<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />.
 [[File:BGIOSGA022531.png|center|thumb|1000px|'''Figure 2.''' ''Gene structure of BGIOSGA02253'' (ERF)]]
 [[File:Os01g0141000.png|center|thumb|1000px|'''Figure 3.''' ''Gene structure of Os01g0141000'' (RAV)]]
* Genes in the AP2 family have been reported to participate in a series of biological processes, including the regulation of flower development, spikelet meristem determinacy, leaf epidermal cell identity and embryo development<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />. Recently, the involvement of members of the RAV family in ethylene response and in brassinosteroid response was reported<ref name="ref1" /><ref name="ref3" />. ERF family were identified and implicated in many diverse functions in cellular processes, such as hormonal signal transduction, response to biotic and abiotic stresses and regulation of metabolism and in developmental processes in various plant species<ref name="ref1" /><ref name="ref2" />.

*'''Pfam: [http://pfam.janelia.org/family/PF00847 PF00847]''' '''||''' '''InterPro: [http://www.ebi.ac.uk/interpro/entry/IPR001471 IPR001471]''' '''||'''

← Older revision		Revision as of 06:42, 13 July 2013
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		+	==References==
		+	<references>
		+	* <ref name="ref1">
		+	Nakano T, Suzuki K, Fujimura T, et al. Genome-wide analysis of the ERF gene family in Arabidopsis and rice[J]. Plant physiology, 2006, 140(2): 411-432.
		+	</ref>
		+	* <ref name="ref2">
		+	Hu L, Liu S. Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers[J]. Genet Mol Biol, 2011, 34: 624-633.
		+	</ref>
		+	* <ref name="ref3">
		+	Rashid M, Guangyuan H, Guangxiao Y, et al. AP2/ERF transcription factor in rice: genome-wide canvas and syntenic relationships between monocots and eudicots[J]. Evolutionary bioinformatics online, 2012, 8: 321.
		+	</ref>
		+	</references>

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+'''[[BGIOSGA008254]]'''
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