ARF - Revision history

Xysj2012: /* Brief Introduction */

2013-07-21T12:46:43Z

‎Brief Introduction

Xysj2012: /* Japonica Group */

2013-07-21T12:18:29Z

‎Japonica Group

Xysj2012: /* Brief Introduction */

2013-07-21T12:18:08Z

‎Brief Introduction

Xysj2012: Created page with "==Brief Introduction== *The plant hormone auxin, typified by indole-3-acetic acid (IAA), regulates a variety of physiological processes, including tropic responses, apical dom..."

2013-05-06T04:05:09Z

Created page with "==Brief Introduction== *The plant hormone auxin, typified by indole-3-acetic acid (IAA), regulates a variety of physiological processes, including tropic responses, apical dom..."

New page

==Brief Introduction==
*The plant hormone auxin, typified by indole-3-acetic acid (IAA), regulates a variety of physiological processes, including tropic responses, apical dominance, lateral root initiation, vascular differentiation, embryo patterning, and shoot elongation.<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />
*Auxin enhances the transcription of several classes of early genes, such as the Aux/IAA, Gretchen Hagen3 (GH3), and SMALL AUXIN UP RNA (SAUR) gene family members (Abel and Theologis, 1996), it regulates plant physiology by modulating the interaction of transcription factors with auxin response elements.<ref name="ref1" /><ref name="ref2" />
<br>
[[File:F_ARF_1.jpg|center|thumb|1000px|'''Figure 1.''' ''Protein Structure'']]
*Auxin response factors (ARFs) are transcription factors that bind with specificity to TGTCTC-containing auxin response elements (AuxREs) found in promoters of primary/early auxin response genes and mediate responses to the plant hormone auxin<ref name="ref1" /><ref name="ref2" />.The ARF genes are represented by a large multigene family in plants<ref name="ref1" />. Through the Genome-wide analysis of the auxin response factors (ARF) gene family in '''''Japonica'''''(by ''Dekai Wang et al.'') and '''''Indica'''''(by ''RiceWiki Curation Team''),25 and 24 ARF genes were identified respectively<ref name="ref1" />.
*'''Pfam: [http://pfam.janelia.org/family/PF06507 PF06507]'''

==''Japonica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[Os01g0236300]]'''
||
'''[[Os01g0670800]]'''
||
'''[[Os01g0753500]]'''
||
'''[[Os01g0927600]]'''
||
'''[[Os02g0141100]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os02g0164900]]'''
||
'''[[Os06g0677800]]'''
||
'''[[Os12g0613700]]'''
||
'''[[Os02g0557200]]'''
||
'''[[Os04g0442000]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os02g0628600]]'''
||
'''[[Os06g0685700]]'''
||
'''[[Os12g0479400]]'''
||
'''[[Os11g0523800]]'''
||
'''[[Os08g0520500]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os05g0515400]]'''
||
'''[[Os04g0519700]]'''
||
'''[[Os04g0664400]]'''
||
'''[[Os04g0671900]]'''
||
'''[[Os06g0196700]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os04g0690600]]'''
||
'''[[Os07g0183100]]'''
||
'''[[Os10g0479900]]'''
||
'''[[Os05g0563400]]'''
||
'''[[Os06g0702600]]'''
|}

==''Indica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA008657]]'''
||
'''[[BGIOSGA014036]]'''
||
'''[[BGIOSGA007153]]'''
||
'''[[BGIOSGA024709]]'''
||
'''[[BGIOSGA003093]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA016467]]'''
||
'''[[BGIOSGA001046]]'''
||
'''[[BGIOSGA008429]]'''
||
'''[[BGIOSGA036199]]'''
||
'''[[BGIOSGA020357]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA014119]]'''
||
'''[[BGIOSGA023490]]'''
||
'''[[BGIOSGA000812]]'''
||
'''[[BGIOSGA005099]]'''
||
'''[[BGIOSGA033901]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA022468]]'''
||
'''[[BGIOSGA007604]]'''
||
'''[[BGIOSGA035840]]'''
||
'''[[BGIOSGA016767]]'''
||
'''[[BGIOSGA020682]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA023559]]'''
||
'''[[BGIOSGA014158]]'''
||
'''[[BGIOSGA026655]]'''
||
'''[[BGIOSGA033142]]'''
||

|}

==References==
<references>
* <ref name="ref1">
Wang D, Pei K, Fu Y, et al. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)[J]. Gene, 2007, 394(1): 13-24.
</ref>
* <ref name="ref2">
Okushima Y, Overvoorde P J, Arima K, et al. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19[J]. The Plant Cell Online, 2005, 17(2): 444-463.
</ref>
* <ref name="ref3">
Plant hormones: physiology, biochemistry and molecular biology[M]. Dordrecht, The Netherlands: Kluwer Academic, 1995.
</ref>
</references>

@@ Line 3: / Line 3: @@
 *Auxin enhances the transcription of several classes of early genes, such as the Aux/IAA, Gretchen Hagen3 (GH3), and SMALL AUXIN UP RNA (SAUR) gene family members (Abel and Theologis, 1996), it regulates plant physiology by modulating the interaction of transcription factors with auxin response elements.<ref name="ref1" /><ref name="ref2" />
 <br>
-[[File:F_ARF_1.jpg|center|thumb|1000px|'''Figure 1.''' ''Protein Structure'']]
+[[File:F_ARF_1.jpg|center|thumb|1000px|'''Figure 1.''' ''Gene Structure'']]
 *Auxin response factors (ARFs) are transcription factors that bind with specificity to TGTCTC-containing auxin response elements (AuxREs) found in promoters of primary/early auxin response genes and mediate responses to the plant hormone auxin<ref name="ref1" /><ref name="ref2" />.The ARF genes are represented by a large multigene family in plants<ref name="ref1" />. Through the Genome-wide analysis of the auxin response factors (ARF) gene family in '''''Japonica'''''(by ''Dekai Wang et al.'') and '''''Indica'''''(by ''RiceWiki Curation Team''),25 and 24 ARF genes were identified respectively<ref name="ref1" />.
 *'''Pfam: [http://pfam.janelia.org/family/PF06507 PF06507]''' <font color=green>'''||'''</font>      '''InterPro: [http://www.ebi.ac.uk/interpro/entry/IPR010525 IPR010525]''' <font color=green>'''||'''</font>

@@ Line 57: / Line 57: @@
 '''[[Os04g0690600]]'''
 ||
-'''[[Os07g0183100]]'''
+'''[[Os06g0702600]]'''
 ||
 '''[[Os10g0479900]]'''
@@ Line 63: / Line 63: @@
 '''[[Os05g0563400]]'''
 ||
-'''[[Os06g0702600]]'''
 |}