AY986492 - Revision history

Lishirong at 13:12, 10 June 2014

2014-06-10T13:12:27Z

Lishirong at 07:55, 28 May 2014

2014-05-28T07:55:26Z

Lishirong at 07:28, 28 May 2014

2014-05-28T07:28:09Z

Lishirong at 06:09, 28 May 2014

2014-05-28T06:09:14Z

Lishirong at 05:28, 28 May 2014

2014-05-28T05:28:57Z

Jiafuxiong: /* Labs working on this gene */

2014-05-24T07:22:27Z

‎Labs working on this gene

Jiafuxiong: /* Evolution */

2014-05-24T07:20:40Z

‎Evolution

Jiafuxiong: /* Expression */

2014-05-24T07:18:51Z

‎Expression

Jiafuxiong: /* Function */

2014-05-24T07:15:33Z

‎Function

Jiafuxiong at 07:13, 24 May 2014

2014-05-24T07:13:18Z

← Older revision		Revision as of 13:12, 10 June 2014
Line 52:		Line 52:
	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L.		High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L.
	Theoretical and Applied Genetics, 2004, 108(5): 800-807		Theoretical and Applied Genetics, 2004, 108(5): 800-807
		+	4.Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa
		+	Theoretical and Applied Genetics, 1992, 84(3-4): 345-354

@@ Line 27: / Line 27: @@
 AP = Chromosome 6:1558..1899|
 CDS = 1558..1899|
 AA = <aaseq>MADWAMHHYLLLANQQRHRALADVAVRRRQLLLDSGRVFMLLGA
                       VILMHMLTTTGGGASSGCTRGAEPCVALLLWLLGAALAMLSLVAGRFPVLAAAIAEEL
                       GDHLLGGLWSL</aaseq>|
-DNA = <dnaseqindica>1 ctgcagctga accaaacagt tttagctcca tcgaagaaag gagttatact gattggaatg
+DNA = <dnaseqindica>1..61#121..181#241..301#361..421# 481..541#601..661#721..781#841..901#961..1021#1081..1141#1201..1261#1321..1381#1441..1501#1561..1621#1681..1741#1801..1861#1921..1981#2041..2101#2161..2221#2281..2341# ctgcagctga accaaacagt tttagctcca tcgaagaaag gagttatact gattggaatgctctcacagt aaaaaaaaca aggaagtaga gctggatttt agacagttct acaagaagtt agaactctac caaaattgga attttggatg atggtctttt aaaaactcga ttgcaggaat aaaattttac ggcttgaaac ttacaaaatg attagaaaag ataacatgcc tcagcgattt gtaaaaaagt gaacaaataa aaatctacaa taccactaaa ctattgcttt attttgggga cattgcttac cattgaaaaa acaactaacc gtaaatacga acacccatat caaatatact atcactgata aaataatcaa ttgtaaattc aagcacacat attagtatag tactttaact cgattggata gaagaaacct aactaattta agctatgcct cacaacaaaa aggtataaat tttttaaggc ttcttttttt ttcttgcgtt tgctagttta tgcttttaag atgtttatac cttttactcc cctcattcac tgtttaaata caatgggaat tagtgaaatc aatgagagtt caaacttcga aacactgaat acatgttatt ttggattgaa atcaaatcga atcagtcaaa ttcaaatagg aggaggaaca taggcattct tcctttcttc agcgggcacc attgaattca gatactgctt cgcctagtct ctgtccaaga ctccacattt tctgatggtg atggggaact ctgaaactat aggaggaaga ataaaatgaa gaatgcagaa atgaatagta atttgtgttt tttaattctt cttcaattcc accttaggat ccaacttcag tccaaatcca aagtaatgca actgccacta gatcaggcta gagcttcaaa ttcaactcca aaaacctccg taaagtggca cacacagagg aaaaatcctg gattcgtcac tgcccatcaa catctgcttt cgcctcccaa ttcctgcttt ctgaaatctg ctttcgccga attcatgcct tcttgaatta tgctttctta gaccctcttt agatgggact aaaactttta ctctctatca catcggatgt ttggacacta attataaata ttaaacgtag actattaata aaacccatct ataatcttgt attaattcgc gagacgaatc tattgagcct aattaatcca tgattagcct atgtgatgct ataataaaca ttctctaatt ataaattaat tgggcttaaa aaatttgtct cgcgtattag ctttcattta tataattagt tttataaata gtctatattt aatactctaa attagtgtct aaatacaggg actaaagtta agtcactgga tccaaacacc acctaaggtt ttcttgtgta cttgtgaatt gtggttgact acgactacta gtgctataaa tagaagaaga gacccataga gagcatcaga gcaaagtact cctaaaagac agccacacac actgagacac ccaagaagct gcctccaatg gcggattggg cgatgcacca ctacctccta ctagccaacc agcaacgcca ccgagccctc gccgacgtcg ccgtccgccg ccgccagctg ctcctcgact ccggccgcgt cttcatgctc ctcggcgccg tcatcctcat gcacatgctc accactaccg gcggcggagc atcgtccggc tgcacccgcg gcgccgaacc ttgcgtcgcc ctcctcctgt ggctgctcgg cgcggcgctc gccatgctgt cgctcgtcgc cggccgattc cccgttctcg ctgccgccat tgctgaggag ctcggtgatc acctgcttgg tggtctctgg tctctctagt tctcctccgt gtccggtggt catcttcttc tccgtgcttt tgctctggag ttgagtacgg atctgtgtgt actgcattct tgcttaatta gtgccctaca cgttatgctt tcgaaacatc atcttttttc agtatagttc aataaatttc agctcaaatt tgtcctccaa gacgagttct ccatccaaac gaaacttatg
-ctctcacagt aaaaaaaaca aggaagtaga gctggatttt agacagttct acaagaagtt
+gtgttccgtt gtttgggccg attttatatg ttggaaatgt acagacttca tagtactgtg tttctttttt ggaataagtt caccagaggt tccttaactt aacggcgata tttttttagg tcctttaacc acaaaaccag aaatgtgcac ccctaaactt tcacaatccg tgcacaagag gtcctatggc agtatacgtg ggtggtttcg ctgacgtgac atcctagtca gcaaaaataa ataaataagt aagtggggcc c</dnaseqindica>|
-agaactctac caaaattgga attttggatg atggtctttt aaaaactcga ttgcaggaat
+Link = [http://www.ncbi.nlm.nih.gov/nuccore/66735943]|
-aaaattttac ggcttgaaac ttacaaaatg attagaaaag ataacatgcc tcagcgattt
+}}
 ==Labs working on this gene==
 . Temasek Life Sciences Laboratory, National University of Singapore, Singapore, 117604, Singapore

@@ Line 27: / Line 27: @@
 AP = Chromosome 6:1558..1899|
 CDS = 1558..1899|
 source=RiceChromosome06
 preset=GeneLocation

@@ Line 10: / Line 10: @@
 ==Structured Information==
-FEATURES             Location/Qualifiers
+{{IndicaGene|
-     source          1..2361
+GeneName = AY986492|
-                     /organism="Oryza sativa Indica Group"
+Description = 2361 bp    DNA     linear   PLN 24-JUN-2005.|
-                     /mol_type="genomic DNA"
+Version = AY986492.1  GI:66735943|
-                     /db_xref="taxon:39946"
+Length = 2361  bp|
-                     /chromosome="6"
+Definition = Oryza sativa (indica cultivar-group) Xa27 (Xa27) gene, Xa27-IRBB27
-                     /note="PstI-ApaI fragment"
+            allele, complete cds.|
-     gene            1558..1899
+Source = Oryza sativa Indica Group
-                     /gene="Xa27"
-                     /allele="IRBB27"
+ORGANISM   Oryza sativa Indica Group
-     CDS             1558..1899
+            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
-                     /gene="Xa27"
+            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
-                     /allele="IRBB27"
+            clade; Ehrhartoideae; Oryzeae; Oryza.
-                     /codon_start=1
-                     /product="Xa27"
+Chromosome = [[:category:Indica Chromosome 6|Chromosome 6]]|
-                     /protein_id="AAY54164.1"
+AP = Chromosome 6:1558..1899|
-                     /db_xref="GI:66735944"
+CDS = 1558..1899|
-                     /translation="MADWAMHHYLLLANQQRHRALADVAVRRRQLLLDSGRVFMLLGA
+GCID = <gbrowseImage1>
                       VILMHMLTTTGGGASSGCTRGAEPCVALLLWLLGAALAMLSLVAGRFPVLAAAIAEEL
-                      GDHLLGGLWSL"
+                      GDHLLGGLWSL</aaseq>|
-ORIGIN
+DNA = <dnaseqindica>1 ctgcagctga accaaacagt tttagctcca tcgaagaaag gagttatact gattggaatg
 ctctcacagt aaaaaaaaca aggaagtaga gctggatttt agacagttct acaagaagtt
 agaactctac caaaattgga attttggatg atggtctttt aaaaactcga ttgcaggaat
@@ Line 70: / Line 79: @@
 tcctttaacc acaaaaccag aaatgtgcac ccctaaactt tcacaatccg tgcacaagag
 gtcctatggc agtatacgtg ggtggtttcg ctgacgtgac atcctagtca gcaaaaataa
-ataaataagt aagtggggcc c
+ataaataagt aagtggggcc c</dnaseqindica>|}}
-//
 ==Labs working on this gene==

@@ Line 8: / Line 8: @@
 ===Evolution===
 Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.
 ==Labs working on this gene==

← Older revision		Revision as of 07:22, 24 May 2014
Line 15:		Line 15:

	2. Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, Anhui, China		2. Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, Anhui, China
		+
		+
		+	==References==
		+	1. Yanchang Luo;Jatinder S. Sangha;Shouhai Wang;Zefu Li;Jianbo Yang;Zhongchao Yin
		+	Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight
		+	Molecular Breeding, 2012, 30(4): 1601-1610
		+	2. Keyu Gu;Bing Yang;Dongsheng Tian;Lifang Wu;Dongjiang Wang;Chellamma Sreekala;Fan Yang;Zhaoqing Chu;Guo-Liang Wang;Frank F. White;Zhongchao Yin
		+	R gene expression induced by a type-III effector triggers disease resistance in rice
		+	Nature, 2005, 435: 1122-1125
		+	3. K.Gu;D.Tian;F.Yang;L.Wu;C.Sreekala;D.Wang;G.-L.Wang;Z.Yin
		+	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L.
		+	Theoretical and Applied Genetics, 2004, 108(5): 800-807

← Older revision		Revision as of 07:20, 24 May 2014
Line 8:		Line 8:
	===Evolution===		===Evolution===
	Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.		Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.
		+
		+	==Labs working on this gene==
		+	1. Temasek Life Sciences Laboratory, National University of Singapore, Singapore, 117604, Singapore
		+
		+	2. Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, Anhui, China
		+
		+	2. Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, Anhui, China

← Older revision		Revision as of 07:18, 24 May 2014
Line 5:		Line 5:
	===Expression===		===Expression===
	The Xa27(t) locus conferred a high level of resistance to 27 strains and moderate resistance to three strains. Resistance of the Xa27(t) gene was developmentally regulated in IRBB27 and showed semidominant or a dosage effect in the cv. CO39 genetic background. As a prelude to cloning Xa27(t), a molecular mapping strategy was employed with a large mapping population consisting of 3,875 gametes		The Xa27(t) locus conferred a high level of resistance to 27 strains and moderate resistance to three strains. Resistance of the Xa27(t) gene was developmentally regulated in IRBB27 and showed semidominant or a dosage effect in the cv. CO39 genetic background. As a prelude to cloning Xa27(t), a molecular mapping strategy was employed with a large mapping population consisting of 3,875 gametes
		+
		+	===Evolution===
		+	Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.

← Older revision		Revision as of 07:15, 24 May 2014
Line 1:		Line 1:
	===Function===		===Function===
	Resistant and susceptible alleles of Xa27 encode identical proteins. However, expression of only the resistant allele occurs when a rice plant is challenged by bacteria harbouring avrXa27, whose product is a nuclear localized type-III effector. Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.		Resistant and susceptible alleles of Xa27 encode identical proteins. However, expression of only the resistant allele occurs when a rice plant is challenged by bacteria harbouring avrXa27, whose product is a nuclear localized type-III effector. Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.
		+
		+
		+	===Expression===
		+	The Xa27(t) locus conferred a high level of resistance to 27 strains and moderate resistance to three strains. Resistance of the Xa27(t) gene was developmentally regulated in IRBB27 and showed semidominant or a dosage effect in the cv. CO39 genetic background. As a prelude to cloning Xa27(t), a molecular mapping strategy was employed with a large mapping population consisting of 3,875 gametes

← Older revision		Revision as of 07:13, 24 May 2014
Line 1:		Line 1:
−	~~function~~	+	===Function===
		+	Resistant and susceptible alleles of Xa27 encode identical proteins. However, expression of only the resistant allele occurs when a rice plant is challenged by bacteria harbouring avrXa27, whose product is a nuclear localized type-III effector. Induction of Xa27 occurs only in the immediate vicinity of infected tissue, whereas ectopic expression of Xa27 resulted in resistance to otherwise compatible strains of the pathogen. Thus Xa27 specificity towards incompatible pathogens involves the differential expression of the R gene in the presence of the AvrXa27 effector.