BZIP - Revision history

Rice2012: /* Brief Introduction */

2013-07-21T13:01:46Z

‎Brief Introduction

Xysj2012 at 12:48, 21 July 2013

2013-07-21T12:48:08Z

Xysj2012: /* Indica Group */

2013-06-10T07:13:55Z

‎Indica Group

Xysj2012: /* Indica Group */

2013-06-10T07:13:13Z

‎Indica Group

Xysj2012: Created page with "==Brief Introduction== * bZIP transcription factors are named according to their bZIP domain, which is composed of a basic region and a Leu zipper
2013-06-10T07:11:10Z

Created page with "==Brief Introduction== * bZIP transcription factors are named according to their bZIP domain, which is composed of a basic region and a Leu zipper<ref name="ref1" /><ref name=..."

New page
==Brief Introduction==
* bZIP transcription factors are named according to their bZIP domain, which is composed of a basic region and a Leu zipper<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />. The basic region consists of about 16 to 18 amino acid residues characterized with an invariant N-x7-R/K motif whereas the Leu zipper is composed of heptad repeats of Leu or other bulky hydrophobic amino acids (Ile, Val, Phe, or Met) positioned exactly nine amino acids toward the C terminus<ref name="ref1" /><ref name="ref2" />.
[[File:F_bzip.png|center|thumb|1000px|'''Figure 1.''' ''Protein Structure of '''BGIOSGA013793''' '']]
* Plant bZIP transcription factors participate in the differentiation of many organs and tissues, embryogenesis, seed maturation, floral transition and initiation, and vascular development<ref name="ref1" /><ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. bZIP transcription factors are also involved in signalling and responses to abiotic/biotic stimuli, including ABA signalling, osmotic, hypoxia, drought, high salinity and cold stresses, and pathogen defence<ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. Some bZIPs also respond to light irradiation and are involved in photomorphism<ref name="ref3" />.
* The phylogenetic analysis of bZIP proteins in rice made by ''Aashima Nijhawan et al.'' showed that bZIP transcription factor genes have appeared before divergence between monocots and dicots. The structure and function of most of the bZIP genes has probably remained conserved during angiosperm evolution<ref name="ref1" />.
'''Pfam: [http://pfam.janelia.org/family/PF00170 PF00170] & [http://pfam.janelia.org/family/PF07716 PF07716]'''

==''Japonica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[Os07g0209800]]'''
||
'''[[Os12g0233800]]'''
||
'''[[Os05g0569300]]'''
||
'''[[Os03g0239400]]'''
||
'''[[Os02g0128200]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os01g0658900]]'''
||
'''[[Os06g0724000]]'''
||
'''[[Os09g0540800]]'''
||
'''[[Os06g0662200]]'''
||
'''[[Os02g0266800]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os02g0175100]]'''
||
'''[[Os02g0833600]]'''
||
'''[[Os08g0472000]]'''
||
'''[[Os08g0549600]]'''
||
'''[[Os01g0867300]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os06g0719500]]'''
||
'''[[Os07g0644100]]'''
||
'''[[Os02g0766700]]'''
||
'''[[Os01g0813100]]'''
||
'''[[Os07g0686100]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os05g0489700]]'''
||
'''[[Os05g0437700]]'''
||
'''[[Os06g0601600]]'''
||
'''[[Os02g0203000]]'''
||
'''[[Os09g0306400]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os07g0182000]]'''
||
'''[[Os03g0770000]]'''
||
'''[[Os06g0211200]]'''
||
'''[[Os05g0129300]]'''
||
'''[[Os09g0456200]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os03g0796900]]'''
||
'''[[Os01g0174000]]'''
||
'''[[Os01g0756200]]'''
||
'''[[Os01g0859300]]'''
||
'''[[Os02g0132500]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os06g0614100]]'''
||
'''[[Os09g0474000]]'''
||
'''[[Os02g0191600]]'''
||
'''[[Os02g0247100]]'''
||
'''[[Os08g0357300]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os04g0637000]]'''
||
'''[[Os08g0487100]]'''
||
'''[[Os11g0152700]]'''
||
'''[[Os09g0280500]]'''
||
'''[[Os01g0542700]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os09g0516200]]'''
||
'''[[Os06g0622700]]'''
||
'''[[Os11g0160500]]'''
||
'''[[Os01g0211800]]'''
||
'''[[Os02g0194900]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os09g0489500]]'''
||
'''[[Os05g0495200]]'''
||
'''[[Os12g0152900]]'''
||
'''[[Os03g0306700]]'''
||
'''[[Os05g0443900]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os01g0859500]]'''
||
'''[[Os11g0154800]]'''
||
'''[[Os06g0265400]]'''
||
'''[[Os03g0336200]]'''
||
'''[[Os12g0634500]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os03g0318600]]'''
||
'''[[Os12g0162500]]'''
||
'''[[Os08g0543900]]'''
||
'''[[Os07g0687700]]'''
||
'''[[Os01g0279900]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os03g0809200]]'''
||
'''[[Os07g0679500]]'''
||
'''[[Os03g0127500]]'''
||
'''[[Os10g0531900]]'''
||
'''[[Os06g0716800]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os12g0194600]]'''
||
'''[[Os06g0720900]]'''
||

||

||

|}
==''Indica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA025382]]'''
||
'''[[BGIOSGA013793]]'''
||
'''[[BGIOSGA036419]]'''
||
'''[[BGIOSGA011142]]'''
||
'''[[BGIOSGA007448]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA020389]]'''
||
'''[[BGIOSGA001085]]'''
||
'''[[BGIOSGA028522]]'''
||
'''[[BGIOSGA020738]]'''
||
'''[[BGIOSGA020743]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA031176]]'''
||
'''[[BGIOSGA006734]]'''
||
'''[[BGIOSGA007649]]'''
||
'''[[BGIOSGA037742]]'''
||
'''[[BGIOSGA005293]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA028831]]'''
||
'''[[BGIOSGA000430]]'''
||
'''[[BGIOSGA037592]]'''
||
'''[[BGIOSGA029127]]'''
||
'''[[BGIOSGA005551]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA026419]]'''
||
'''[[BGIOSGA020087]]'''
||
'''[[BGIOSGA026248]]'''
||
'''[[BGIOSGA023213]]'''
||
'''[[BGIOSGA006916]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA019930]]'''
||
'''[[BGIOSGA000613]]'''
||
'''[[BGIOSGA040512]]'''
||
'''[[BGIOSGA024713]]'''
||
'''[[BGIOSGA010835]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA040605]]'''
||
'''[[BGIOSGA019116]]'''
||
'''[[BGIOSGA022536]]'''
||
'''[[BGIOSGA030899]]'''
||
'''[[BGIOSGA009643]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA019118]]'''
||
'''[[BGIOSGA025074]]'''
||
'''[[BGIOSGA004481]]'''
||
'''[[BGIOSGA008968]]'''
||
'''[[BGIOSGA018059]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA002286]]'''
||
'''[[BGIOSGA020889]]'''
||
'''[[BGIOSGA006975]]'''
||
'''[[BGIOSGA007184]]'''
||
'''[[BGIOSGA004837]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA020887]]'''
||
'''[[BGIOSGA029595]]'''
||
'''[[BGIOSGA002288]]'''
||
'''[[BGIOSGA007886]]'''
||
'''[[BGIOSGA023314]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA026766]]'''
||
'''[[BGIOSGA019942]]'''
||
'''[[BGIOSGA017208]]'''
||
'''[[BGIOSGA034480]]'''
||
'''[[BGIOSGA030427]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA023284]]'''
||
'''[[BGIOSGA029440]]'''
||
'''[[BGIOSGA003709]]'''
||
'''[[BGIOSGA003710]]'''
||
'''[[BGIOSGA034853]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA029546]]'''
||
'''[[BGIOSGA017801]]'''
||
'''[[BGIOSGA007726]]'''
||
'''[[BGIOSGA012462]]'''
||
'''[[BGIOSGA027558]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA036617]]'''
||
'''[[BGIOSGA034827]]'''
||
'''[[BGIOSGA000451]]'''
||
'''[[BGIOSGA004628]]'''
||
'''[[BGIOSGA037021]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA012577]]'''
||
'''[[BGIOSGA021487]]'''
||
'''[[BGIOSGA000624]]'''
||
'''[[BGIOSGA029106]]'''
||
'''[[BGIOSGA010850]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA037037]]'''
||
'''[[BGIOSGA029105]]'''
||
'''[[BGIOSGA034759]]'''
||
'''[[BGIOSGA035772]]'''
||
'''[[BGIOSGA036957]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA003265]]'''
||
'''[[BGIOSGA023710]]'''
||
'''[[BGIOSGA026428]]'''
||
'''[[BGIOSGA002137]]'''
||
'''[[BGIOSGA011761]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA020519]]'''
||

||

||

||

|}
==References==
<references>
<ref name="ref1">
Wang D, Pei K, Fu Y, et al. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)[J]. Gene, 2007, 394(1): 13-24.
</ref>
* <ref name="ref2">
Wei K, Chen J, Wang Y, et al. Genome-Wide Analysis of bZIP-Encoding Genes in Maize[J]. DNA research, 2012, 19(6): 463-476.
</ref>
* <ref name="ref3">
Corrêa L G G, Riaño-Pachón D M, Schrago C G, et al. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes[J]. PLoS One, 2008, 3(8): e2944.
</ref>
* <ref name="ref4">
Alves M S, Dadalto S P, Gonçalves A B, et al. Plant bZIP Transcription Factors Responsive to Pathogens: A Review[J]. International journal of molecular sciences, 2013, 14(4): 7815-7828.
</ref>
</references>

@@ Line 4: / Line 4: @@
 * Plant bZIP transcription factors participate in the differentiation of many organs and tissues, embryogenesis, seed maturation, floral transition and initiation, and vascular development<ref name="ref1" /><ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. bZIP transcription factors are also involved in signalling and responses to abiotic/biotic stimuli, including ABA signalling, osmotic, hypoxia, drought, high salinity and cold stresses, and pathogen defence<ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. Some bZIPs also respond to light irradiation and are involved in photomorphism<ref name="ref3" />.
 * The phylogenetic analysis of bZIP proteins in rice made by ''Aashima Nijhawan et al.'' showed that bZIP transcription factor genes have appeared before divergence between monocots and dicots. The structure and function of most of the bZIP genes has probably remained conserved during angiosperm evolution<ref name="ref1" />.
-*'''Pfam: [http://pfam.janelia.org/family/PF00170 PF00170] & [http://pfam.janelia.org/family/PF07716 PF07716]'''
+*'''Pfam: [http://pfam.janelia.org/family/PF00170 PF00170]''' <font color=green>'''||'''</font>      '''InterPro: [http://www.ebi.ac.uk/interpro/entry/IPR004827 IPR004827]''' <font color=green>'''||'''</font>
 ==''Japonica'' Group==

@@ Line 1: / Line 1: @@
 ==Brief Introduction==
 * bZIP transcription factors are named according to their bZIP domain, which is composed of a basic region and a Leu zipper<ref name="ref1" /><ref name="ref2" /><ref name="ref3" />. The basic region consists of about 16 to 18 amino acid residues characterized with an invariant N-x7-R/K motif whereas the Leu zipper is composed of heptad repeats of Leu or other bulky hydrophobic amino acids (Ile, Val, Phe, or Met) positioned exactly nine amino acids toward the C terminus<ref name="ref1" /><ref name="ref2" />.
-[[File:F_bzip.png|center|thumb|1000px|'''Figure 1.''' ''Protein Structure of '''BGIOSGA013793''' '']]
+[[File:F_bzip.png|center|thumb|1000px|'''Figure 1.''' ''Gene Structure of '''BGIOSGA013793''' '']]
 * Plant bZIP transcription factors participate in the differentiation of many organs and tissues, embryogenesis, seed maturation, floral transition and initiation, and vascular development<ref name="ref1" /><ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. bZIP transcription factors are also involved in signalling and responses to abiotic/biotic stimuli, including ABA signalling, osmotic, hypoxia, drought, high salinity and cold stresses, and pathogen defence<ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. Some bZIPs also respond to light irradiation and are involved in photomorphism<ref name="ref3" />.
 * The phylogenetic analysis of bZIP proteins in rice made by ''Aashima Nijhawan et al.'' showed that bZIP transcription factor genes have appeared before divergence between monocots and dicots. The structure and function of most of the bZIP genes has probably remained conserved during angiosperm evolution<ref name="ref1" />.

@@ Line 244: / Line 244: @@
 |-style="background:white; color:black" align="center"
+!
-'''[[BGIOSGA040605]]'''
+'''[[BGIOSGA011761]]'''
 ||
 '''[[BGIOSGA019116]]'''
@@ Line 361: / Line 361: @@
 ||
 '''[[BGIOSGA002137]]'''
 ||
 |}

@@ Line 237: / Line 237: @@
 '''[[BGIOSGA000613]]'''
 ||
-'''[[BGIOSGA040512]]'''
+'''[[BGIOSGA020519]]'''
 ||
 '''[[BGIOSGA024713]]'''
@@ Line 365: / Line 365: @@
 |-style="background:white; color:black" align="center"
+!
-'''[[BGIOSGA020519]]'''
 ||
@@ Line 375: / Line 375: @@
 |}
 ==References==
 <references>