MiRNA-Seq Related Studies in Rice - Revision history

Xysj1988 at 08:45, 14 July 2016

2016-07-14T08:45:21Z

Zhennan at 02:09, 28 June 2016

2016-06-28T02:09:54Z

Zhennan at 07:54, 27 June 2016

2016-06-27T07:54:29Z

Zhennan at 07:24, 27 June 2016

2016-06-27T07:24:08Z

Zhennan at 07:21, 27 June 2016

2016-06-27T07:21:35Z

Zhennan at 07:18, 27 June 2016

2016-06-27T07:18:46Z

Zhennan at 07:15, 27 June 2016

2016-06-27T07:15:30Z

Zhennan at 07:01, 27 June 2016

2016-06-27T07:01:22Z

Zhennan at 06:55, 27 June 2016

2016-06-27T06:55:45Z

Xysj1990: /* Abiotic stresses induce the aberrant expression of miRNAs */

2016-06-22T00:47:58Z

‎Abiotic stresses induce the aberrant expression of miRNAs

@@ Line 29: / Line 29: @@
 |2011
 |Journal of Experimental Botany
-|[[IC4R001-miRNA-2011-21362738]]
+|'''[[IC4R001-miRNA-2011-21362738]]'''
 |-
 |'''Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa'''
@@ Line 35: / Line 35: @@
 |2011
 |Genome Biology
-|[[IC4R002-miRNA-2011-21679406]]
+|'''[[IC4R002-miRNA-2011-21679406]]'''
 |-
 |'''Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)'''
@@ Line 41: / Line 41: @@
 |2011
 |Journal of Experimental Botany
-|[[IC4R003-miRNA-2011-21791435]]
+|'''[[IC4R003-miRNA-2011-21791435]]'''
 |-
 |'''Identification and Expression Analysis of microRNAs at the Grain Filling Stage in Rice(Oryza sativa L.)via Deep Sequencing'''
@@ Line 47: / Line 47: @@
 |2013
 |PLoS One
-|[[IC4R004-miRNA-2013-23469249]]
+|'''[[IC4R004-miRNA-2013-23469249]]'''
 |-
 |'''Identification of Novel Oryza sativa miRNAs in Deep Sequencing-Based Small RNA Libraries of Rice Infected with Rice Stripe Virus'''
@@ Line 53: / Line 53: @@
 |2012
 |PLoS One
-|[[IC4R005-miRNA-2012-23071571]]
+|'''[[IC4R005-miRNA-2012-23071571]]'''
 |-
 |'''Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice'''
@@ Line 59: / Line 59: @@
 |2014
 |BMC Plant Biology
-|[[IC4R006-miRNA-2014-25052585]]
+|'''[[IC4R006-miRNA-2014-25052585]]'''
 |-
 |'''Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)'''
@@ Line 65: / Line 65: @@
 |2014
 |Gene
-|[[IC4R007-miRNA-2014-24315823]]
+|'''[[IC4R007-miRNA-2014-24315823]]'''
 |-
 |'''Identification and analysis of seven H₂O₂-responsive miRNAs and 32 new miRNAs in the seedlings of rice'''
@@ Line 71: / Line 71: @@
 |2011
 |Nucleic Acids Research
-|[[IC4R008-miRNA-2011-21113019]]
+|'''[[IC4R008-miRNA-2011-21113019]]'''
 |-
 |'''Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa'''
@@ Line 77: / Line 77: @@
 |2010
 |Journal of Experimental Botany
-|[[IC4R009-miRNA-2010-20729483]]
+|'''[[IC4R009-miRNA-2010-20729483]]'''
 |-
 |'''Identification of novel stress-regulated microRNAs from Oryza sativa L.'''
@@ Line 83: / Line 83: @@
 |2010
 |Genomics
-|[[IC4R010-miRNA-2010-19796675]]
+|'''[[IC4R010-miRNA-2010-19796675]]'''
 |-
 |'''Highly specific gene silencing by artificial miRNAs in rice'''
@@ Line 89: / Line 89: @@
 |2008
 |PLoS One
-|[[IC4R011-miRNA-2008-18350165]]
+|'''[[IC4R011-miRNA-2008-18350165]]'''
 |-
 |'''Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)'''
@@ Line 95: / Line 95: @@
 |2009
 |BMC Plant Biology
-|[[IC4R012-miRNA-2009-20017947]]
+|'''[[IC4R012-miRNA-2009-20017947]]'''
 |}

@@ Line 70: / Line 70: @@
 |''Oryza sativa L '' indica ''
 |2011
-|Nucleic Acids Res
+|Nucleic Acids Research
 |[[IC4R008-miRNA-2011-21113019]]
 |-
@@ Line 76: / Line 76: @@
 |''Oryza Sativa''
 |2010
-|J Exp Bot
+|Journal of Experimental Botany
 |[[IC4R009-miRNA-2010-20729483]]
 |-
@@ Line 94: / Line 94: @@
 |''Oryza sativa''
 |2009
-|BMC Plant Biol
+|BMC Plant Biology
 |[[IC4R012-miRNA-2009-20017947]]
 |}

@@ Line 85: / Line 85: @@
 |[[IC4R010-miRNA-2010-19796675]]
 |-
-|'''Microarray-based analysis of cadmium-responsive microRNAs in rice'''
+|'''Highly specific gene silencing by artificial miRNAs in rice'''
 |''Oryza sativa''
-|2011
+|2008
-|J Exp Bot
+|PLoS One
-|[[IC4R011-miRNA-2011-21362738]]
+|[[IC4R011-miRNA-2008-18350165]]
 |-
 |'''Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)'''

@@ Line 91: / Line 91: @@
 |[[IC4R011-miRNA-2011-21362738]]
 |-
-|'''Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)'''
+|'''Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)'''
 |''Oryza sativa''
-|2011
+|2009
-|J Exp Bot
+|BMC Plant Biol
-|[[IC4R012-miRNA-2011-21791435]]
+|[[IC4R012-miRNA-2009-20017947]]
 |}

@@ Line 91: / Line 91: @@
 |[[IC4R011-miRNA-2011-21362738]]
 |-
-|'''Identification and characterization of salt responsive miRNA-SSR markers in rice'''
+|'''Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)'''
-|''Oryza Sativa''
+|''Oryza sativa''
-|2014
+|2011
-|Gene
+|J Exp Bot
-|[[IC4R012-miRNA-2014-24315823]]
+|[[IC4R012-miRNA-2011-21791435]]
 |}

@@ Line 9: / Line 9: @@
 ==Abiotic stresses induce the aberrant expression of miRNAs==
 * The role of miRNAs in plant response to abiotic stress was initially suggested after data gathered from miRNA target prediction, miRNA expression profile studies during plant response to abiotic stress, and surveys of NCBI expressed sequence tags (ESTs). In one of the earliest plant miRNA papers, Jones-Rhoades and Bartel <ref name="ref5" /> predicted and validated that ATP sulphurylase (APS), the enzyme that catalyses the first step of inorganic sulphate assimilation, was one of the targets of miR395, which is responsive to sulphate levels in plants. Based on this initial result, they further analysed the response of miR395 to cellular sulphate levels. Their results showed that in comparison with plants growing under normal sulphate conditions (2 mM SO 42– ), miR395 was induced by >100-fold under low sulphate treatment (0.02 mM SO 42– ), suggesting that miR395 is involved in sulphate uptake and metabolism in plants. At the same time, Sunkar and Zhu (2004) constructed small RNA libraries from Arabidopsis seedling samples treated with cold stress (0 °C for 24 h), salt stress (300 mM NaCl for 5 h), drought stress (dehydration for 10 h), and hormones [100 μM abscisic acid (ABA) for 3 h], as well as from the untreated controls.<br><br>
-[[File: IC4R-miRNA-overview-1.png|center|thumb|970px|'''Figure 2. The miRNA–target gene network is involved in plant response to environmental abiotic stresses.''']]<br><br>
+[[File: IC4R-miRNA-overview-1.png|center|thumb|970px|'''Figure 2. The miRNA–target gene network is involved in plant response to environmental abiotic stresses.''']]<br>
 * The '''''Figure2''''' describes the miRNA–target gene network is involved in plant response to environmental abiotic stresses. Different stresses induced and/or inhibited the expression of individual miRNAs that target transcription factors and/or stress related genes. This network further regulates plant development as well as response to abiotic stress. Plant hormones are also involved in this process through directly/indirectly regulating the expression of miRNAs and their targets.