Os01g0206700 - Revision history

Xysj2012: /* Structured Information */

2015-05-13T07:05:33Z

‎Structured Information

Zhangye: /* Function */

2015-01-29T08:07:09Z

‎Function

Zhangye: /* Expression */

2015-01-29T06:41:44Z

‎Expression

Zhangye at 06:39, 29 January 2015

2015-01-29T06:39:09Z

124.16.129.48 at 18:46, 22 July 2012

2012-07-22T18:46:26Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os01g0206700| Description = Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20)| Version = NM_001048880.1 GI:115435173..."

2012-06-25T04:28:27Z

Created page with "{{JaponicaGene| GeneName = Os01g0206700| Description = Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20)| Version = NM_001048880.1 GI:115435173..."

New page

{{JaponicaGene|
GeneName = Os01g0206700|
Description = Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20)|
Version = NM_001048880.1 GI:115435173 GeneID:4327093|
Length = 1922 bp|
Definition = Oryza sativa Japonica Group Os01g0206700, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
AP = Chromosome 1:5808569..5810490|
CDS = 5808778..5810163|
GCID = <gbrowseImage1>
name=NC_008394:5808569..5810490
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008394:5808569..5810490
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggagaagaaggcgtccatcctcatgaaccggtatgagctcggccgcatgctcgggcaaggcaccttcgccaaggtgtaccatgcacggaaccttgcatccaaccagagcgtcgccatcaaggtcattgacaaggaaaaggtattgcgtgtcggcatgattgaccagatcaagcgagagatctccatcatgcgcctcgttcgccaccccaacatcgtccagctgcacgaggtcatggccagcaagagcaagatatactttgcaatggagtatgtccggggtggtgagctcttcagcagggtagccagggggcgactcaaggaggatgctgcgaggaagtacttccagcagttgataggggctgtggacttctgtcacagccgcggtgtctaccaccgagacctcaagccagagaacctcctcgtcgacgagaatggcaacctcaaagtgtcggactttgggctgagcgccttcaaggagtgtcagaagcaggacgggctgctccacacgacgtgtggcacacctgcatatgttgcaccagagataatcaataagaggggctatgatggagcaaaagcagacatatggtcttgcggtgtcatactctttgttctgcttgctggctacctcccattccatgactcaaatctaatggagatgtaccggaagataagcaaaggtgatgtcaagttcccacagtggttcactactgatgtccgaaggcttctgtccaggctgcttgatccaaatccaaacattaggatcaccgttgagaagctagttgagcatccatggttcaagaaggggtacaaaccagcagtgatgctatcacagccaaatgaatcaaacaacctcaaggatgtccatactgctttcagtgctgatcacaaggacaatgaaggcaaggcaaaagaaccagcaagctctttgaagccagtgagcttgaatgcatttgacatcatctccctctccaaaggatttgatctgtcaggcctgtttgagaacgacaaagagcagaaggcagactcacggttcatgacacaaaaaccagcatcagcaatagtgtcaaagctagagcagattgctgagacagagagcttcaaggtgaagaagcaggatggactggtgaagctccagggatccaaagaagggaggaaagggcagctcgcgatcgatgcagagatctttgaagtgacaccatccttctttgttgttgaggtgaagaagtctgcaggggacacgttggagtacgaaaaattctgcaacaagggcctaagaccttctctcagggacatctgctgggatggtcagtcagagcatccatcactggcacagtcatcaactctgactcagtcctctaagtcaatctcgagacatgccatttaa</cdnaseq>|
AA = <aaseq>MEKKASILMNRYELGRMLGQGTFAKVYHARNLASNQSVAIKVID KEKVLRVGMIDQIKREISIMRLVRHPNIVQLHEVMASKSKIYFAMEYVRGGELFSRVA RGRLKEDAARKYFQQLIGAVDFCHSRGVYHRDLKPENLLVDENGNLKVSDFGLSAFKE CQKQDGLLHTTCGTPAYVAPEIINKRGYDGAKADIWSCGVILFVLLAGYLPFHDSNLM EMYRKISKGDVKFPQWFTTDVRRLLSRLLDPNPNIRITVEKLVEHPWFKKGYKPAVML SQPNESNNLKDVHTAFSADHKDNEGKAKEPASSLKPVSLNAFDIISLSKGFDLSGLFE NDKEQKADSRFMTQKPASAIVSKLEQIAETESFKVKKQDGLVKLQGSKEGRKGQLAID AEIFEVTPSFFVVEVKKSAGDTLEYEKFCNKGLRPSLRDICWDGQSEHPSLAQSSTLT QSSKSISRHAI</aaseq>|
DNA = <dnaseqindica>328..1713#acaaacacctggcctatttttaggcatcctcttccatctccagagaagtgagccccagcctcatgtcacaagggaagcactagccaccatagaactctctctctttttctccttcctcctaggaggatcccaaatacaccaatcgtgtcttggattttcccaaacacagcgcgcactctcgcccttcacctctcctccctctcacccttccattacatggatcagggagggaggaaggaggcctgaagtggcgcagagtaggcgcttgtaaacaaatccccccatttgcttcttttgcactgaagaatccctgaagaatccagcaggatggagaagaaggcgtccatcctcatgaaccggtatgagctcggccgcatgctcgggcaaggcaccttcgccaaggtgtaccatgcacggaaccttgcatccaaccagagcgtcgccatcaaggtcattgacaaggaaaaggtattgcgtgtcggcatgattgaccagatcaagcgagagatctccatcatgcgcctcgttcgccaccccaacatcgtccagctgcacgaggtcatggccagcaagagcaagatatactttgcaatggagtatgtccggggtggtgagctcttcagcagggtagccagggggcgactcaaggaggatgctgcgaggaagtacttccagcagttgataggggctgtggacttctgtcacagccgcggtgtctaccaccgagacctcaagccagagaacctcctcgtcgacgagaatggcaacctcaaagtgtcggactttgggctgagcgccttcaaggagtgtcagaagcaggacgggctgctccacacgacgtgtggcacacctgcatatgttgcaccagagataatcaataagaggggctatgatggagcaaaagcagacatatggtcttgcggtgtcatactctttgttctgcttgctggctacctcccattccatgactcaaatctaatggagatgtaccggaagataagcaaaggtgatgtcaagttcccacagtggttcactactgatgtccgaaggcttctgtccaggctgcttgatccaaatccaaacattaggatcaccgttgagaagctagttgagcatccatggttcaagaaggggtacaaaccagcagtgatgctatcacagccaaatgaatcaaacaacctcaaggatgtccatactgctttcagtgctgatcacaaggacaatgaaggcaaggcaaaagaaccagcaagctctttgaagccagtgagcttgaatgcatttgacatcatctccctctccaaaggatttgatctgtcaggcctgtttgagaacgacaaagagcagaaggcagactcacggttcatgacacaaaaaccagcatcagcaatagtgtcaaagctagagcagattgctgagacagagagcttcaaggtgaagaagcaggatggactggtgaagctccagggatccaaagaagggaggaaagggcagctcgcgatcgatgcagagatctttgaagtgacaccatccttctttgttgttgaggtgaagaagtctgcaggggacacgttggagtacgaaaaattctgcaacaagggcctaagaccttctctcagggacatctgctgggatggtcagtcagagcatccatcactggcacagtcatcaactctgactcagtcctctaagtcaatctcgagacatgccatttaagtgcaacctcataagagatgcagtaacaatccattttcctctctccttttccctttcatcaaagtgctgagcctgagagtattctcacttgagcatcaggcttagggctctttgatgataatttttgccagttttccttgtatagtagcagtttgtctacatggatctcctgttctttcaccaatagaaacagggagattgacaacagc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048880.1 RefSeq:Os01g0206700]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

@@ Line 4: / Line 4: @@
 ===Function===
 In the pairs ''OsCIPK5'':''OsCIPK13'', one of the genes had almost negligible expression exhibiting pseudo-functionalization<ref name="ref2"/>.
 ===Expression===

@@ Line 8: / Line 8: @@
 *''OsCIPK05'' was '''induced by drought''' and '''ABA''' treatment<ref name="ref1"/>. ''OsCIPK05'' showed down-regulation at 2 and 8 h after drought treatment but up-regulation at 4 and 6 h<ref name="ref3"/>.
-*''OsCIPK05'' showed expression in the '''leaf''', '''shoot''', '''anther''', and '''stigma/ovary''' and had a predominant role in these tissues/organs compared to ''OsCIPK20'', except for the mature anther where ''OsCIPK20'' had preferred expression<ref name="ref3"/>. *Under the high salinity conditions, ''OsCIPK5'' was transcriptionally up-regulated only in '''roots'''.<ref name="ref4"/>.
+*''OsCIPK05'' showed expression in the '''leaf''', '''shoot''', '''anther''', and '''stigma/ovary''' and had a predominant role in these tissues/organs compared to ''OsCIPK20'', except for the mature anther where ''OsCIPK20'' had preferred expression<ref name="ref3"/>. Under the high salinity conditions, ''OsCIPK5'' was transcriptionally up-regulated only in '''roots'''<ref name="ref4"/>.
 *By the RT-PCR-based cDNA cloning approach, '''15''' CIPK genes were cloned from stress-treated seedlings of Nipponbare. Among them, '''10''' genes ([[Os07g0678600|''OsCIPK2'']], ''OsCIPK5'', [[Os03g0339900|''OsCIPK10'']], ''OsCIPK11'', [[Os01g0759400|''OsCIPK12'']], [[Os12g0113500|''OsCIPK14'']], [[Os11g0113700|''OsCIPK15'']], [[Os05g0332300|''OsCIPK18'']], [[Os06g0543400|''OsCIPK25'']] and [[Os02g0161000|''OsCIPK26'']]) were '''intron-less''', and other '''five''' genes ([[Os01g0292200|''OsCIPK1'']], [[Os03g0319400|''OsCIPK3'']], [[Os03g0634400|''OsCIPK7'']], [[Os07g0150700|''OsCIPK23'']] and [[Os06g0606000|''OsCIPK24'']]) were '''intron-rich''', consistent with the previous data<ref name="ref4"/>.
 ===Evolution===

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsCIPK05''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+In the pairs ''OsCIPK5'':''OsCIPK13'', one of the genes had almost negligible expression exhibiting pseudo-functionalization<ref name="ref2"/>.
 ===Expression===
-Please input expression information here.
+*''OsCIPK05'' was '''induced by drought''' and '''ABA''' treatment<ref name="ref1"/>. ''OsCIPK05'' showed down-regulation at 2 and 8 h after drought treatment but up-regulation at 4 and 6 h<ref name="ref3"/>.
 ===Evolution===
-Please input evolution information here.
+''OsCIPK05'' belongs to '''subgroup III''' of ''OsCIPK'' family<ref name="ref3"/>.
-You can also add sub-section(s) at will.
+*As a plant-specific Ca<sup>2+</sup> sensor relaying pathway, the CBL–CIPK pathway has some crosstalk with other signaling pathways. In addition, research has shown that there is crosstalk between the CBL–CIPK pathway and the low-K<sup>+</sup> response pathway, the ABA signaling pathway, the nitrate sensing and signaling pathway, and others<ref name="ref5"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Center of Plant Gene Research (Wuhan), National Key Laboratory of Crop Genetic Improvement,
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 18:46, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os01g0206700\|		GeneName = Os01g0206700\|

@@ Line 54: / Line 54: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]