Os01g0273800 - Revision history

Xysj1981 at 06:07, 8 March 2017

2017-03-08T06:07:37Z

Xysj2012: /* Structured Information */

2015-05-13T07:10:25Z

‎Structured Information

Selma: /* Expression */

2014-05-26T16:11:11Z

‎Expression

Selma: /* Expression */

2014-05-26T16:09:44Z

‎Expression

Selma: /* Labs working on this gene */

2014-05-15T04:21:16Z

‎Labs working on this gene

Selma: /* References */

2014-05-15T04:20:52Z

‎References

Selma: /* Function */

2014-05-15T01:19:34Z

‎Function

Selma: /* Function */

2014-05-15T00:59:51Z

‎Function

Selma: /* Annotated Information */

2014-05-15T00:57:57Z

‎Annotated Information

Selma: /* References */

2014-05-14T16:52:19Z

‎References

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os01g0273800''''' was reported as ''''' OsYUC9''''' in 2012 <ref name="ref1" /> by researchers from Australia.
 ==Annotated Information==
 ===Function===
-IAA（indole-3-acetic acid）is important during starch deposition in addition to its previously suggested role early in grain development.                    OsYUC9, is a kind of IAA biosynthesis gene. OsYUC9 and its encoded enzymes may have a role in the starch deposition phase in rice grains.
+* IAA production in developing rice grains is controlled via expression of '''''OsTAR1, OsYUC9, OsYUC11''''' and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development.
 ===Expression===
-The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially. Analysis of gene co-expressiong between TAA/TAR, endosperm related YUCCAs and OsTDC1 and its orthologues.OsYUC9 is always co-expressed gene.The table bellow was downloaded via PLEXdb (http://www.plexdb.org) , and it is about RMA nomalized expression data from reproductive tissue in microarray expriments OS5, OS32, OS8 (rice), AT40 (Arabidopsis thaliana) and ME1 (Medicago truncatula), the pearson correlation coefficient (r) and slope were calculated in Excel and used to derive the statistical significance of the correlation[1].
+* '''''OsYUC9''''' was expressed in endosperm.
 ===Evolution===
-[[File:yxm.jpg]]
+* Phylogenetic analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of YUCCAs, which do not have orthologues outside the Angiosperms. This clade may have evolved with a specific role in endosperm.
 ==Labs working on this gene==
-----
+* Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia
-、Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia
+* Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA
 ==References==
-、Yousef M. Abu-Zaitoon, Karina Benett, Jennifer Normanly and Heather M. Nonhebel(2012), A large increase in IAA during development of rice grains correlates with the expressing of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA, Physiologia Plantarum 146:487-499
+<references>
-----
+* <ref name="ref1">
-、Edgar RC(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
+bu-Zaitoon YM, Bennett K, Normanly J, Nonhebel HM. A large increase in IAA
-----
+during development of rice grains correlates with the expression of tryptophan
-、Felsenstein J(1989)PHYLIP-Phylogeny Inference Package(Version 3.2). Cladistics 5:164-166
+aminotransferase OsTAR1 and a grain-specific YUCCA. Physiol Plant. 2012
-----
+Dec;146(4):487-99. doi: 10.1111/j.1399-3054.2012.01649.x. PubMed PMID: 22582989.
-、Information from NCBI:
+</ref>
-[http://www.ncbi.nlm.nih.gov/gene/?term=Os01g0273800]
+</references>
 ==Structured Information==

@@ Line 40: / Line 40: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]

@@ Line 16: / Line 16: @@
 ===Expression===
 The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially. Analysis of gene co-expressiong between TAA/TAR, endosperm related YUCCAs and OsTDC1 and its orthologues.OsYUC9 is always co-expressed gene.The table bellow was downloaded via PLEXdb (http://www.plexdb.org) , and it is about RMA nomalized expression data from reproductive tissue in microarray expriments OS5, OS32, OS8 (rice), AT40 (Arabidopsis thaliana) and ME1 (Medicago truncatula), the pearson correlation coefficient (r) and slope were calculated in Excel and used to derive the statistical significance of the correlation[1].
 ===Evolution===

@@ Line 15: / Line 15: @@
 ===Expression===
-The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially.
+The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially. Analysis of gene co-expressiong between TAA/TAR, endosperm related YUCCAs and OsTDC1 and its orthologues.OsYUC9 is always co-expressed gene.The table bellow was downloaded via PLEXdb (http://www.plexdb.org) , and it is about RMA nomalized expression data from reproductive tissue in microarray expriments OS5, OS32, OS8 (rice), AT40 (Arabidopsis thaliana) and ME1 (Medicago truncatula), the pearson correlation coefficient (r) and slope were calculated in Excel and used to derive the statistical significance of the correlation[1].
 ===Evolution===

@@ Line 21: / Line 21: @@
 ==Labs working on this gene==
 ----
-Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia
+、Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia
 ----
-Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003,USA
+、Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003,USA
 ----

@@ Line 5: / Line 5: @@
 IAA(indole-3-acetic acid) is important during starch deposition in addition to its previously suggested role early in grain development. And IAA production in developing rice grains is controlled via expression of OsTAR1,OsYUC9 and OsYUC11. That is to say, OsYUC9, OsYUC11 and OsTAR1 are IAA biosynthesis genes during the rice grain development. The research notes that IAA content increase by 50-fold correlated with a large increase in the expression of OsYUC9 and OsYUC11.
 In conclusion, Os01g0273800(RAP-DB), OsYUC9, is a kind of IAA biosynthesis gene. OsYUC9 and its encoded enzymes may have a role in the starch deposition phase in rice grains.
 ===Gene type===
-protein codin
+protein coding
 ===General protein information===
 Names：hypothetical protein
 ----
 FAD dependent oxidoreductase family protein~contains InterPro domain(s): IPR013027, IPR000103, IPR000960, IPR006076, IPR000205~has GO asignment(s): GO:0004497, GO:0006118, GO:0016491~supported by AK109645
 ----
 ===Expression===
 The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially.
 ===Evolution===