Os01g0536000 - Revision history

Xysj2012: /* Structured Information */

2015-05-13T07:15:07Z

‎Structured Information

Zhangye: /* Knowledge Extension */

2015-01-29T08:32:18Z

‎Knowledge Extension

Zhangye at 08:30, 29 January 2015

2015-01-29T08:30:45Z

Zhangye at 08:29, 29 January 2015

2015-01-29T08:29:44Z

124.16.129.48 at 18:52, 22 July 2012

2012-07-22T18:52:24Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os01g0536000| Description = Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SE..."

2012-06-25T04:43:41Z

Created page with "{{JaponicaGene| GeneName = Os01g0536000| Description = Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SE..."

New page

{{JaponicaGene|
GeneName = Os01g0536000|
Description = Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein)|
Version = NM_001049794.1 GI:115437291 GeneID:4326419|
Length = 8329 bp|
Definition = Oryza sativa Japonica Group Os01g0536000, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
AP = Chromosome 1:21126107..21134435|
CDS = 21126517..21126612,21127124..21127198,21127298..21127354,21128220..21128336,21128878..21128991<br>,21129310..21129432,21129581..21129670,21130500..21130625,21132677..21132730<br>,21132803..21132877,21132957..21133064,21133291..21133362,21133473..21133535<br>,21134110..21134280|
GCID = <gbrowseImage1>
name=NC_008394:21126107..21134435
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008394:21126107..21134435
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaataattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaaagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaaatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctag</cdnaseq>|
AA = <aaseq>MVGGGALRRVGKYEVGRTIGEGTFAKVKFAQNTESGESVAMKVV DRSSILKHKMADQIKREISIMKLVRHPNVVRLHEVLASRKKIFIILEFITGGELFDKI IRHGRLNEADARRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSAW PAQGGALLRTTCGTPNYVAPEVLSHKGYDGALADTWSCGVILYVLLAGYLPFDEVDLT TLYGKIESAEYSFPAWFPNGAKSLIHRILDPNPDKRIRIEEIRNDEWFKKNYEPTREI ESEEVNLDDVNAAFDDPEEDADHTLDDEAGPLTLNAFDLIILSQGLNLAALFDRRQDY DKLQNRFLSRKPAKVIMSSMEVVAQSMGYKTHIRNYKMRVEGLNANKTSHLAVMLEIF EVAPSIFMIELQRAAGDTSDYNKFINNYCSKLDDIIWNFPIEKSKSRISRLSKR</aaseq>|
DNA = <dnaseqindica>7824..7919#7238..7312#7082..7138#6100..6216#5445..5558#5004..5126#4766..4855#3811..3936#1706..1759#1559..1633#1372..1479#1074..1145#901..963#156..326#atcccccatctcaatggcgatgtcgagctgagcaccaccctagcggtggagtaggggagctgtggtcggcggcggccgccgccagttgggtgtctcggagtgagaccgggagaggcggcggagggagctcagggagggagggaggaggggcggcgatggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcaggtgagcccccatctatctcttctgtttttttttcctttttttgttctctctatttgcgtgttgatcaagagattttgctgtactagcttagcttgggaattaattagtgtatgccacggatttgtctagcgccttgagacacagaatggatgagggagattgtttaattcgaccctcttttcatcctcttttgcgccaaattctactcggtttgtcaatggtgggtttgatgcttcatgtccaattggcgtctagcttgcagcttcctttccccacaacaaagtgttaacagtggtggtaccaggattgttgaatcgaatcgcaattttaaacttccgccgagcagtttgttcttctgtatatacctattaagatattgttgttataaaagaaaaaaaaaagtaaggtacctatgtcaagaagcacccctttgtaaaaaagaactcacaggtttatgcttgtaagggaaaggcagttttagctgttctagttttgtgttgttgagctgcgtaagttagctgaatcctgatgtatcagggtgataaaacaggagcttacttaattatttctgcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtacaccctctttcccttttctctctttaagttttgttgtttacttctttgttctctcttgctttttccaagtgctgattgggtgatcatatctgttctgttatgtgcaggtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaatagtaaggccctgcttgttaatgataagtgtccttttcagtgtcattttctcgatatgacctatgaaaaaattgaagttaaattagttcttgtatctgttgcctagttgtctacctcattacttctggattgaacaatcgccacttgtgcttgttggatttaacacacaaaaatgagttttcaaatctatgttgaagcttagttattctgggaacaatgccatttcagattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaaggtgataagtcaaaagaaaaatacgaaaactttttgtgtttagtttgtgggctttttgattttattttgtatgtatgcagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcaggtccatacctttctgaaggcttgtccaatattcatatccttttgtcgagttatttagtttgttcttgtgcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggtgagtgacatctgaatcacatgctttgctttgagttttcctagatagaaaacattaaaattgtcttctgcaacaaagggtggtttaaatatgggttaattggatccatgccactgcaactttgccaaattgaaaaaatgccactactattcatcatatcggctacatgccactcgaaatttctaaaattggaaccatgccactccagtcagtttttccgtcctcctctctcacgccgtctctattcccgtcattatcccccctcccttcccatcctcctgctcctaggtggccggggacagcaccaccaccttcgtcgtcctcaccggcgcaagggtcggcggcgccggtgcacgaagacgaggctggcctgtggttcccgttcgcggactcgctggagaaggacatcttctcggacctcttctacgaggcgcccgtcgcggcggcggcaacggctgcggctgctggcctaggcgccgatggcgacagcgacggcgaaggcaagccttgcaaggacgatgcggcaatggcggaggagcgtggcgggccgggcgcggcgcgacctgatgccgccgcccaagtcgacgcccctcttctctttattccccacttctctccaccacgtccatgatgttagccgtcgcgccggggaacgggttgccggcacggaggttgttgtcggcgtccatcaccctgtacaccaccttgtgcgtcggcttgccgtgctcgtccacgccattctctgcaaagatttcacgtatctcactgtcaatttgacaaatgaactcatccaatccagcgacagcaacatctgtatggatttaacaagaatggaccaagcaagatcgaagcagtcggcggcttggcgccgcgggggctgcccatgccaagggcctcacggccgaggcaatgcggcggccgtggcgccgcatgtcggggtccccgaccgccgacactttgccgccgccattcgtctcgagtctcttgatggactgcgccaccaagtagcacgagatggcgaggacttgacggacccgtgggcggcggcgggggccgccgccgccaaggcgtccgcagaggccccgcgccgctggagcggaggcggagggcaagggacgccgagctgtccgcgctcgcgtcggccacccgtgaggctgtgaccgctcgcgccgccgtgttccgggagccgtccccggcgccgttggacgcgtcgtcgacggcggggcggcgcagagctcccgcccgtggtgctgcgcgcgtcgtcgctgatccagcggtggcgggagatcgaggcgatggggcccgccacgtcgcggccctacgacctggccttcgactccgacggcggctcgccgcgggccacgtggggtgcatcgtcaagaagctcagtggcacgtcgttgccgccgccgctgtactcgatccacgatgggaggtctcgggagccgctgctgccgtcctcgacgccatctgcggcgggagtgctcgggagctgccggcggcgtcgccgctgtcctttgcagtcgcacggagaaagaagagggaaatggaaacgattaaacggtggaacgagacggtgtgagagaggagacggaaaaagggacgagagtggcatggttctaattttaaaaatttctagtggcatgtagctaatatgatgaatagtagtggtattttttcaatttcgtatagttgcagtggcatggatccaattaaccctttaaatataccttcatcctaagatgtcagattactcagttaaacatgtgtgatggaatactcatacatttatccttcaggcaggttgagtaacattgttccaccgtgtaacttaagacatcttctctaaaaaaatgtaaaaaataaaaagtgatataactagaactgttttttatctctatactgaatgagccaaatatgcatgattgatatctcttgattctttatttggaaaaatgctttacttttcattctcagtaaaaccatgtgatgtgtttcatatgattatagataatgtgttcactgcaacctttaactccttgtatggatcaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaaggtttgtttcttctaacctatggcaacttttttgaagctcaaataagtatattgcaacccatttatgattttgtgtcagtgtatatcatattggcacatgatctctttgtatggaagatcagatctcatgacatttacttgtatttgcttttactatacactatgtgcttacgtttattatctagccactcatttaagcatgattagtggtattagtttgtgaaatccatgtgaaaacaatatcaaacatactcggtacttctcagtgcatagatagctaagtagcttatgtaatgtagtgtgttgctagtagttaaagattacagatcctggcagtggctctgatacgtgagcatagtgatctcatacctgctttcctactgctgaaacattccggcaagtaagaaatgtaagcttgccgaaacaactaaccaactaaaaggaaattaacctcggcatcctttagaataaactagttaacatgctactactttcaataagagaattagcagagaagctggggagcacaacaacaatagcagactcattacacatggcttcatagctaaatcctctccttttcgctcttgtttctcttttctttttggttggtggaagtataaacatttgtattccattctagtaggactgattaagagatatatctatttgcatatttcaggttgagatgcatatagctatttttattttctagatttgaatattagttcaacatatgccttgatggatggaatagaagtttttatctaaaattgtttttcttttgtacagaatatacaaatttatatctgtctatttgcttaatacagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaagtaagtaaagttatagaagtgtttagctaaagaaaatctccattggctgatatgaattcaatgaattatagtttagatacatcacacctctagatactgattttcattggcattttgttgactcaatatgaattttgacttggaacagagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggtatttatgcttactcttgtcttagaactgtttttggaaaggaatcattgcatatatatgacattttgtatgtgctacaatcttcaaaatatgctccaaatgaaagcctcggaatggaatttcagttgctccagataagaactattagcagtaactgaaactggaatttcagttgctccattgttaattatgaaatttgatcagaaagcctgtttcgcactgaagctatgctgtacgtttttacgggagctctattgtgccttttacctgtcattatataaatatataatttgtggtcctttttctgtgtgatttcaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggtatggtgcaagacattttgtgatgtctagtgttttcgcaaactaaaagttggagtacaggactaacactgttattatgtcatgtcccagttctacattttttaattaatacgctatttgggcattaaatcatggttcttattgttattatcggtgaatattcagtttagtttaaatagtgtacatgtgatttgctgcggcagtttacattatttttgcaatcatgtattatatgcatagactaaagaaaatccatttgattcaaattattttaacatataaccagaggaaaaagacaatgatagaccatcccatctgatgatctttgttcctcttctctcaaacacaccttaatattgttgctgcccaacttgacacaattcaaactatcctctatttttattatttttgtatgtactccgcaatactggtattgcctagaagcttgtttaaatgtccatggtttaccctgtgtgtgagttttatagataattatgggtttcttctcctcggacctaatgcttgatgccttgatctacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataaggtaaagtttgttgccccacaccctatagcttgttacaacatcacttacctattatacagatattgcaaatcatcttctccttcatcttagctgacaagcagttgttctatctattttgtgatagttagaatgtaactgttttttggttcattgtacagacatacagacatgaggatctgtagttctgttaaggtctaaattgtatcagaagaagcagcaccctgtcttgaaaagcttattgttttctggaatgtgaatatgttattttaaagtcaaataaatttcttattatcttcaatgtatcaagcctcatgtttgaacaagttgtcaagagaacgtcatttgatatgctggcatttacatttgaaattattgtctaagtagcaaccacaaactacctctgaattgacacaaaaagcatgatgatatcaaaagtattaattcattagaatgtgtttaggttgctggtctaaggggttacaataaactgtaccccaattttttgtacatatatatgcacaagttttatcaacctgagtaaacagtacttcatttcagtccttttaccactggtttaacagtattgaatggtattgccagtgatacatctctttaatttcttgtattgtttgtttgtggcctttttttttcccttttggcataacattgtctggatgctggtaaattgtgatcaaatgcgggcttacagttttaatattattcatgctgttattttgcaagtaaaagagttataatgttttgtcttgtgattttgattctcaaaacttcttttactgctaattagttagcattaccatggacatatttgattccttacatctagttgtgctattaatatattcagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaagtgagtcttgcctcttttgtaatgaagtacatctgttgttttattgccttctattatggattactccaatccttttcatcctgagtttcctctggtcagatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaaggtcagatgcaaagagcctttcatacttgcatcatgctgtttcttgaggtcctacagccgatacaccatgtatagctaaatgcacctgatacatctaggctgtagacagcctagtgttataaagctggaaaatattttgcaatgttgttaccacagagctttacggagactgtctagaaaatagttaggtactagtagtaccagactgatgtgggacctacctgtgtacatgcatggaccgtactattcatttgctgctgtcttatttttcagtttgtgttttgtcaaagctaaataagcatgcctaatgttaaaggttaggcatgggcaaatatattcaagtagtttcttcacccaagaaatctgaaatagtaatgcttataatttcctgatgaaacttcttgcttcactagatatttttgtgaattgtataatgtaaaataaattgatctggataatggcttttgatttgctaagacatgcacaactaactccgcgtgtcttatgtgcagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctagtctgctttgacatccatcatttgtatgctgttgttcaactctattttcatcttctattgccataatatttgcatttacctctacttattacctcttaaccataccggaatgctcaccactattgcaggtactatgtgtaatctaatgctatgcagcttgagtggtattgggtttgttagtggatgtatttgtagagattgccaattcaattcatctctgatcttttagttataagagatgaccatgtacaaagggccactgaaagttttggcatctcagtttctctgtacaatgtttgcagcgaggtatattaaacagtttgactgaccgccgctccctgctcatcaacacgctttgtagtttgtctcaagatgtattaatttctccctgctccattagcagcttgcatc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049794.1 RefSeq:Os01g0536000]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

@@ Line 15: / Line 15: @@
 ===Knowledge Extension===
-[[File: OsCIPK family Functional.png|left|thumb|260px|'''Figure 1.''' ''Functional gene network analysis of OsCIPK family members.(from reference <ref name="ref1"/>).'']]
+[[File: OsCIPK family Functional.png|left|thumb|260px|'''Figure 1.''' ''Functional gene network analysis of OsCIPK family members.(from reference <ref name="ref2"/>).'']]
 *From real-time RT-PCR analyses, ''Giong et al.'' identified 16 OsCIPK genes showing a significant up- or down-regulation in response to '''drought stress'''. Using the probable functional gene network tool, RiceNet, ''Giong et al.'' generated a hypothetical functional gene network based on 15 out of 16 OsCIPK proteins (Fig. 1)<ref name="ref2"/>.
 *More than 200 interactions mediated by these OsCIPK proteins. This network was further refined by integrating fold change data showing at least 1 log2-fold up-regulation (red colored nodes in Fig. 1) or less than -1 log2-fold down-regulation (green colored nodes in Fig. 1) under drought stress to all the elements in this network<ref name="ref2"/>.

← Older revision		Revision as of 08:30, 29 January 2015
Line 1:		Line 1:
−	'''''~~OsCIPK06~~''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>.	+	'''''OsCIPK08''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>.

	==Annotated Information==		==Annotated Information==

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+'''''OsCIPK06''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+Almost all OsCIPK proteins contain the complete protein kinase domain (except [[Os07g0637000|''OsCIPK21'']]) and the NAF domain (except ''OsCIPK8''). ''OsCIPK08'' has lost the region containing the FISL/NAF motif, but it contains the full N-terminal catalytic domain (sharing sequence homology with SNF)<ref name="ref1"/>.
 ===Expression===
-Please input expression information here.
+''OsCIPK08'' was '''induced by salinity stress'''<ref name="ref1"/>, the expression of ''OsCIPK08'' was relatively high in the '''shoot'''<ref name="ref2"/>.
 ===Evolution===
-Please input evolution information here.
+''OsCIPK08'' belongs to '''subgroup I''' of ''OsCIPK'' family<ref name="ref2"/>.
-You can also add sub-section(s) at will.
+*The calcineurin B-like protein–CBL-interacting protein kinase ('''CBL–CIPK''') signaling pathway in plants is a Ca<sup>2+</sup>-related pathway that responds strongly to both abiotic and biotic environmental stimuli<ref name="ref3"/>. The CBL-CIPK system shows variety, specificity, and complexity in response to different stresses, and the CBL–CIPK signaling pathway is regulated by complex mechanisms in plant cells<ref name="ref3"/>.
 ==Labs working on this gene==
-Please input related labs here.
+*National Center of Plant Gene Research (Wuhan), National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==

← Older revision		Revision as of 18:52, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os01g0536000\|		GeneName = Os01g0536000\|

@@ Line 41: / Line 41: @@
 ==Structured Information==
 [[Category:Genes]]
 [[Category:Japonica mRNA]]