Os01g0710200 - Revision history

192.168.72.52 at 04:54, 14 May 2015

2015-05-14T04:54:05Z

Nisw: /* Labs working on this gene */

2014-05-29T08:46:21Z

‎Labs working on this gene

Nisw at 08:45, 29 May 2014

2014-05-29T08:45:30Z

Nisw: /* Annotated Information */

2014-05-29T08:36:35Z

‎Annotated Information

Nisw: /* Annotated Information */

2014-05-29T08:34:00Z

‎Annotated Information

Nisw at 08:28, 29 May 2014

2014-05-29T08:28:04Z

Nisw at 08:25, 29 May 2014

2014-05-29T08:25:41Z

Nisw: /* References */

2014-05-29T08:20:11Z

‎References

Nisw: /* References */

2014-05-29T08:18:49Z

‎References

Nisw: /* References */

2014-05-29T08:18:10Z

‎References

← Older revision		Revision as of 04:54, 14 May 2015
Line 34:		Line 34:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
−	~~GeneName = Os01g0710200\|~~
−	~~Description = Amine oxidase domain containing protein\|~~
−	~~Version = NM_001050573.1 GI:115439516 GeneID:4327828\|~~
−	~~Length = 1539 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os01g0710200, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 1\|Chromosome 1]]\|~~
−	~~AP = Chromosome 1:31269225..31270763\|~~
−	~~CDS = 31269225..31270763\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008394:31269225..31270763~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008394:31269225..31270763~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggtggcgaagaagccgagggttgtggtggtgggcgcggggatatcgggcctcgcggcggcgcaccggctgtgcggcgcgggcggggacaggttcgaggtggcggtggtggaggccggcgaccgagtcggcggccggatcctcacgtccgagttcgccggccaccgggtcgagatgggcgccacgtgggtgcagggcgtcgtcgggagccccgtgtacgctctggcgcgcgacgccggcgcgctcggggaggaggagggtcgtggtctcccgtacgagcgcatggacggcttccccgaccgcgtgctgaccgtcgcagagggcggcgaggtcgtcgacgcggacacggtggctggcccgatcgaggagctgtacaggggcatgatggaggccgcgcgcgccggcgaggctggtggtggaggcggcgtggaggagtacctgcgccgtggcctacgggcgtaccaggcggcgcggtctgccggcggcggcggcggcggcggcaaggagcttgaggaggtggacgaggcgctgctcgccatgcacatcaaccgggagcggaccgacacctccgccgacgacctcggcgacctcgacctcaccgccgagggcgagtaccgcgacttccccggcgaacacgtcacgattcccggcggctactcccgcgtggtcgagcgcctcgccgctgcgctcccgcccggcaccgtccgcctcggactccgtctccgccgtctcaagtggggcggaacccctgtccgcctccacttcgcggatggcgcgccgccgctcaccgccgaccacgtcatcctcacggtctcgctgggcgtcctcaaggccagcctcggcaacaaggacaccgccggcgttggcgcggccgccatcgccttcgacccgccgctcccgcctttcaagcgcgaggccgtcgcgcgcctcggcttcggcgtcgtgaacaagctgttcatggaggtggaggccgtggcgccatcggaaccggaggacgtcgccggcgtgcagccggcggcggcgggcttcccgttcctgcacatggcgttccggggacacgtgtccaagatcccgtggtggatgcgcggcacggagtcgatctgccccgtccacgcgggctccaccgtggcgctggcgtggttcgccggccgggaggcggcgcacctcgagtccctccccgacgacgacgtcatccgcggggcccacgccacgctggactccttcctcccggcggcgccacggtggagggtgaggaggatcaagcggagcgggtgggccacggacccgctcttcctcgggtcatacagctacgtggccgtcggatcgagcggcgacgacctcgatcgcatggccgaaccgctgccacgtgggccagacgccgccgccgacgagcggccgccgtcgccgcggctgctgttcgccggcgaggcgacgcaccgcacgcactactcaacgacgcacgccgcgtacctgagcggcgtgcgcgaggctaaccggctgctgcaacactaccgcggcggagcgaatcacaccacgtag</cdnaseq>\|
−	AA = <aaseq>MVAKKPRVVVVGAGISGLAAAHRLCGAGGDRFEVAVVEAGDRVG GRILTSEFAGHRVEMGATWVQGVVGSPVYALARDAGALGEEEGRGLPYERMDGFPDRV LTVAEGGEVVDADTVAGPIEELYRGMMEAARAGEAGGGGGVEEYLRRGLRAYQAARSA GGGGGGGKELEEVDEALLAMHINRERTDTSADDLGDLDLTAEGEYRDFPGEHVTIPGG YSRVVERLAAALPPGTVRLGLRLRRLKWGGTPVRLHFADGAPPLTADHVILTVSLGVL KASLGNKDTAGVGAAAIAFDPPLPPFKREAVARLGFGVVNKLFMEVEAVAPSEPEDVA GVQPAAAGFPFLHMAFRGHVSKIPWWMRGTESICPVHAGSTVALAWFAGREAAHLESL PDDDVIRGAHATLDSFLPAAPRWRVRRIKRSGWATDPLFLGSYSYVAVGSSGDDLDRM AEPLPRGPDAAADERPPSPRLLFAGEATHRTHYSTTHAAYLSGVREANRLLQHYRGGA NHTT</aaseq>\|
−	DNA = <dnaseqindica>1..1539#atggtggcgaagaagccgagggttgtggtggtgggcgcggggatatcgggcctcgcggcggcgcaccggctgtgcggcgcgggcggggacaggttcgaggtggcggtggtggaggccggcgaccgagtcggcggccggatcctcacgtccgagttcgccggccaccgggtcgagatgggcgccacgtgggtgcagggcgtcgtcgggagccccgtgtacgctctggcgcgcgacgccggcgcgctcggggaggaggagggtcgtggtctcccgtacgagcgcatggacggcttccccgaccgcgtgctgaccgtcgcagagggcggcgaggtcgtcgacgcggacacggtggctggcccgatcgaggagctgtacaggggcatgatggaggccgcgcgcgccggcgaggctggtggtggaggcggcgtggaggagtacctgcgccgtggcctacgggcgtaccaggcggcgcggtctgccggcggcggcggcggcggcggcaaggagcttgaggaggtggacgaggcgctgctcgccatgcacatcaaccgggagcggaccgacacctccgccgacgacctcggcgacctcgacctcaccgccgagggcgagtaccgcgacttccccggcgaacacgtcacgattcccggcggctactcccgcgtggtcgagcgcctcgccgctgcgctcccgcccggcaccgtccgcctcggactccgtctccgccgtctcaagtggggcggaacccctgtccgcctccacttcgcggatggcgcgccgccgctcaccgccgaccacgtcatcctcacggtctcgctgggcgtcctcaaggccagcctcggcaacaaggacaccgccggcgttggcgcggccgccatcgccttcgacccgccgctcccgcctttcaagcgcgaggccgtcgcgcgcctcggcttcggcgtcgtgaacaagctgttcatggaggtggaggccgtggcgccatcggaaccggaggacgtcgccggcgtgcagccggcggcggcgggcttcccgttcctgcacatggcgttccggggacacgtgtccaagatcccgtggtggatgcgcggcacggagtcgatctgccccgtccacgcgggctccaccgtggcgctggcgtggttcgccggccgggaggcggcgcacctcgagtccctccccgacgacgacgtcatccgcggggcccacgccacgctggactccttcctcccggcggcgccacggtggagggtgaggaggatcaagcggagcgggtgggccacggacccgctcttcctcgggtcatacagctacgtggccgtcggatcgagcggcgacgacctcgatcgcatggccgaaccgctgccacgtgggccagacgccgccgccgacgagcggccgccgtcgccgcggctgctgttcgccggcgaggcgacgcaccgcacgcactactcaacgacgcacgccgcgtacctgagcggcgtgcgcgaggctaaccggctgctgcaacactaccgcggcggagcgaatcacaccacgtag</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050573.1 RefSeq:Os01g0710200]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 1]]~~
−	~~[[Category:~~Chromosome 1]]

@@ Line 20: / Line 20: @@
 ==Labs working on this gene==
 Graduate School of Life Sciences, Tohoku University, Japan
 Faculty of Pharmaceutical Sciences, Josai University, Japan
 Biodiversity and Climate Research Center, Laboratory Centre, German

@@ Line 17: / Line 17: @@
 [[File:Nisw1.jpg]]
 ==Labs working on this gene==
-Please input related labs here.
+Graduate School of Life Sciences, Tohoku University, Japan
 ==References==

@@ Line 1: / Line 1: @@
 This is the Oryza sativa Polyamine oxidase 1(OsPAO1)encoding gene.
 ==Annotated Information==
-Oryza sativa contains seven genes encoding polyamine oxidases, termed OsPAO1 to OsPAO7 based on their chromosomal number and gene ID number[Fig.1].
+Oryza sativa contains seven genes encoding polyamine oxidases, termed OsPAO1 to OsPAO7 based on their chromosomal number and gene ID number.
 [[File:Nisw2.jpg]]
 ===Function===
 Polyamine oxidases (PAOs) are FAD-dependent enzymes involved in polyamine (PA) catabolism. In plants, the major PAs are the diamine, putrescine (Put), triamine, spermidine (Spd), tetrraamines, spermine (Spm) and thermospermine (T-Spm). These aliphatic amines of small molecular mass are involved in various biological processes, as growth factors, they play important roles in plant development, sex differentiation, fruit ripening, senility and adversity adapting.

@@ Line 1: / Line 1: @@
 This is the Oryza sativa Polyamine oxidase 1(OsPAO1)encoding gene.
 ==Annotated Information==
-Oryza sativa contains seven genes encoding polyamine oxidases, termed OsPAO1 to OsPAO7 based on their chromosomal number and gene ID number.
+Oryza sativa contains seven genes encoding polyamine oxidases, termed OsPAO1 to OsPAO7 based on their chromosomal number and gene ID number[Fig.1].
 [[File:Nisw2.jpg]]
 ===Function===
 Polyamine oxidases (PAOs) are FAD-dependent enzymes involved in polyamine (PA) catabolism. In plants, the major PAs are the diamine, putrescine (Put), triamine, spermidine (Spd), tetrraamines, spermine (Spm) and thermospermine (T-Spm). These aliphatic amines of small molecular mass are involved in various biological processes, as growth factors, they play important roles in plant development, sex differentiation, fruit ripening, senility and adversity adapting.

@@ Line 25: / Line 25: @@
 ===Evolution===
 Phylogenetic analysis of the amino acid sequences of the seven O. sativa PAOs, five Arabidopsis PAOs, and several other plant PAOs have been performed [Fig.2]. Plant PAOs were divided into four clades: clade I includes Arabidopsis AtPAO1, tobacco NtPAO, and apple MdPAO1. Clade II comprises the three rice members, OsPAO2, OsPAO6, and OsPAO7, along with maize ZmPAO, barley HvPAO1, and HvPAO2. Clade III is built by OsPAO1, Brassica juncea BjPAO, and AtPAO5. In clade IV, three rice PAOs, OsPAO3, OsPAO4, and OsPAO5 were grouped together with Arabidopsis peroxisome-localized members, AtPAO2, AtPAO3, and AtPAO4.
 You can also add sub-section(s) at will.

@@ Line 33: / Line 33: @@
 ==References==
-	Ono Y, Kim DW, Watanabe K, Sasaki A, Niitsu M, Berberich T, et al. Constitutively and highly expressed Oryza sativa polyamine oxidases localize in peroxisomes and catalyze polyamine back conversion. Amino Acids. 2012 42:867-76.
+Liu, T., Kim, D.W., Niitsu, M., Maeda, S., Watanabe, M., Kamio, Y., Berberich, T., and Kusano, T. (2014a). Polyamine Oxidase 7 is a Terminal Catabolism-Type Enzyme in Oryza sativa and is Specifically Expressed in Anthers. Plant & cell physiology.
-	Liu TB, Kim DW, Niitsu M, Berberich T, Kusano T. Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine. Plant Cell Rep. 2014 33:143-51.
+Ono, Y., Kim, D.W., Watanabe, K., Sasaki, A., Niitsu, M., Berberich, T., Kusano, T., and Takahashi, Y. (2012). Constitutively and highly expressed Oryza sativa polyamine oxidases localize in peroxisomes and catalyze polyamine back conversion. Amino Acids 42, 867-876.
 ==Structured Information==