Os01g0711600 - Revision history

192.168.72.52 at 04:54, 14 May 2015

2015-05-14T04:54:11Z

Damonsong at 04:02, 25 May 2014

2014-05-25T04:02:32Z

Damonsong: /* References */

2014-05-25T03:59:37Z

‎References

Damonsong: /* Labs working on this gene */

2014-05-25T03:58:26Z

‎Labs working on this gene

Damonsong: /* Expression */

2014-05-25T03:55:34Z

‎Expression

Damonsong: /* Expression */

2014-05-25T03:53:44Z

‎Expression

Damonsong: /* Expression */

2014-05-25T03:51:00Z

‎Expression

Damonsong: /* Expression */

2014-05-25T03:46:45Z

‎Expression

Damonsong: /* Expression */

2014-05-25T03:46:35Z

‎Expression

Damonsong: /* Expression */

2014-05-25T03:45:38Z

‎Expression

← Older revision		Revision as of 04:54, 14 May 2015
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	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
−	~~GeneName = Os01g0711600\|~~
−	~~Description = Protein of unknown function DUF778 family protein\|~~
−	~~Version = NM_001050583.1 GI:115439536 GeneID:4325934\|~~
−	~~Length = 2967 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os01g0711600, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 1\|Chromosome 1]]\|~~
−	~~AP = Chromosome 1:31328501..31331467\|~~
−	~~CDS = 31329927..31330232,31331004..31331423\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008394:31328501..31331467~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008394:31328501..31331467~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggcaccaaacaaaatttcctcaatggatgctggagcagcttttgatgacgaagatgctagttccagcaattcactgcaggagttgtggccagttggcgagatagatcctaagagagcaagatttccttgttgcattgtttggactcctcttcctattgtctcgtggcttgctccttacatagggcatgctggaatctgtcgagaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgcatatggttctattgcgagatatctccagcttgacagaaagaagtgttgctttcctgttaatctcgcgacacatgtatgtgagcggtcctacaagcatgcagaagcaggaacggcgatttcctgggacgacgctctgcaactgggcatgagaagtttcgggcacaagttctataatctgtttacctgcaattgctactcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttgttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggcctttcctaatagggatggcagccttctcttctctcttgattggatggtttgtatttgctgtatactgcatgaaggatctagtgtgctga</cdnaseq>\|
−	AA = <aaseq>MAPNKISSMDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPC CIVWTPLPIVSWLAPYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDRKK CCFPVNLATHVCERSYKHAEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCL NRLAYNGSVKWNVLNVAALVWLRGQWVDKMSVVRSFFPFLTVTCVGILMAGWPFLIGM AAFSSLLIGWFVFAVYCMKDLVC</aaseq>\|
−	DNA = <dnaseqindica>1427..1732#2504..2923#tgcgcttaccatttgcgccgcccatcgcgtccagctagcgcctggcgcggctgcagatgcagctgctgagctgcaggtgcatgcacctttcccacccccacctccctctctccccttcgtcttcctctatagcccgcgccgcgcctccctgtccccgagtccgaagcccgaatccgaagcgaagtgaccgcaagagctcacccccgagtccccccctcgccggatcgcgcgggccgcctacctcctcccgtcgcaccagctaccgcggtgagttgctcccctctcgatctctgctctgttaggttcggttggttcgtggccgtgctggctgcggcagtgttggggaaggacggggggttttgggggctagtttacgattcgattttccctctgctgtgtttgtgtttttcttttccccagcgaggatgaaactattacatatgactatgtggttatgtggtatcgaagcagatcgaataattgatccggaatgtataggagtagtacttttgttcgaatcgacataggcgtttactagtttgtgcggttgggtacaaacaaattttgtaagaggaagcttaatagtgtacccaactactagcttcaattcatctatagccaatcaaatacatcattcatacaatagttacatactacactattaatacttggtcccacctgtcatacacacacttcgtcttggagtccgtgctacactgccattctttctccttatttttcttcttaaaatatgtttgcagctagcttatagcctgctattgtacataatctaatggctaataaggttctcgccgcggcggtaactctgccccttgcgtgagctgagctcagaagatgatgtcaccaagtgcactaatgactcatgtattcttgatgatctttgttgaagtagtttactatttggggtagtataaagtctaaaactgccatttggtgctaatcagggccgttgtagctgtttcttttttcattttgatgccttgatgctctccttgagaattaagatactacaataattgtactagccaaaaagggattaggagtttgaaagatgatgaactggggaaggactaaagtttgtaatgaatggccgcataggtaatgatttgatctgtggagaatttgtaaaggaagttaacaaagtttgttctattcaagaaattgttttgctctcatctctttttccatattcaacatcttttattagattttattgtgacatgacattttgtttgtgtatttgtcataacagaggtaccaaactggatatatgattgagtcttcatctattactttttgtcctgaagtatgggggcctaaatttttgtcattaatttcagggaatgcgaagatcttgcgatggaagctagtcaaatctgatttcgtttaagtacaagtaacaacaatggcaccaaacaaaatttcctcaatggatgctggagcagcttttgatgacgaagatgctagttccagcaattcactgcaggagttgtggccagttggcgagatagatcctaagagagcaagatttccttgttgcattgtttggactcctcttcctattgtctcgtggcttgctccttacatagggcatgctggaatctgtcgagaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgcatatggttctattgcgagatatctccagcttgacagaaagaaggtatgcatgattcgaatatttttcatttcttcatttggaatggtgtacataattcaacctacttgatagtagtttattcatccaaaatggcaaccctcatagctataggatccatgaaaacccttgttgacttaaaaaaaacacactactagtatgttattttgacatttacttcctgtgtcaatagcttcaaaatgatttgtgctgctgttgcaagaaaacaatctgaacttcctctctacttaagttgcttgaaacaaaattttcatgatcttactgttctttaaagagaacattttccaagctaattcctaaatatagaaatctttaaacagtgggctatttaagtaatgataaaacatattttaaaatttccatgcttgagaaaaaagtgaaagaaatataaaaattatgagttggggacactgaacctggggcttcagccagtgccaggtatcacggactgatcatgacagtacatggctagaacaagggcaattgggcaaaggctgaatattactagcgtttgctcatgaaaatctgttgatcaattccaatatttatttaatgatagcagtgttagtgtgttatttacaaataacttgtcaaaaacgtcaaatatgtgctgaagttgcataagatgtttttgtatcatcttaatccatagataaacttcttgtcaattgtcatttcattaaaaaaaatagtagtgtcatttcaaataggttagttttcttgacactctgtatgttctttttttctcttgactagtgttgctttcctgttaatctcgcgacacatgtatgtgagcggtcctacaagcatgcagaagcaggaacggcgatttcctgggacgacgctctgcaactgggcatgagaagtttcgggcacaagttctataatctgtttacctgcaattgctactcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttgttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggcctttcctaatagggatggcagccttctcttctctcttgattggatggtttgtatttgctgtatactgcatgaaggatctagtgtgctgactcttttaaagaacattggcactgaatcctgtgatgaattatgg</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050583.1 RefSeq:Os01g0711600]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 1]]~~
−	~~[[Category:~~Chromosome 1]]

@@ Line 6: / Line 6: @@
 ===Expression===
-. Cross-species complementation test of OsRTHs in ''Arabidopsis''('''fig.2''').
+. Cross-species complementation test of OsRTHs in ''Arabidopsis''('''fig.1''').
 Functional analyses of plant RTHs in Arabidopsis. The seedling triple-response phenotype of ethylene-grown wild type (Col-0) and ''35S:OsRTH1'' transformation lines (A), (''ETR1'')4LOF and a mutant expressing ''35S:OsRTH1'' (B),'' etr1''-7 and a mutant expressing ''35S:OsRTH1'' (C), and ''etr1-2 rte1-2 ''and a mutant expressing ''35S:OsRTH1'' (D). (E) The seedling triple-response phenotype of the wild type (Col-0) expressing ''35S:OsRTH2'' and ''35S:OsRTH3.'' (F) Seedling triple-response phenotype of ''etr1-2 rte1-2 ''expressing ''35S:OsRTH2'' and'' OsRTH3''. Leaf senescence phenotype of the wild type (Col-0) (G) and ethylene-insensitive ''etr1-2'' (H); phenotype of wild type (Col-0), (''ETR1'')4LOF (J), ''etr1-2 rte1-2'' (K), and'' etr1-7'' (L) expressing ''35S:OsRTH1''. Air and ethylene indicate the phenotype of the same plants before and after the treatment, respectively. Chlorophyll a measurement (M) and SAG12 expression (N) of the wild type (Col-0), ''etr1-2'', and ''35S:OsRTH1'' transformants in the corresponding mutation background as indicated. Error bars indicate the standard error (SE) for the means of five measurements. RT-PCR, analysis of the mRNA level of corresponding transgenes at the translational level. a (air) and b (ethylene) indicate a statistically significant difference (a-0.01) between the wild type and mutant or transformation lines.
@@ Line 12: / Line 12: @@
-                                                               '''Fig.2 expression in ''Arabidopsis'''''
+                                                               '''Fig.1 expression in ''Arabidopsis'''''
 [[File:Fig.2 expression.png]]
-. GFP-fused OsRTHs are associated with the Golgi('''fig.3''').
+. GFP-fused OsRTHs are associated with the Golgi('''fig.2''').
-                                                               '''Fig. 3 GFP-fused OsRTHs location'''
+                                                               '''Fig. 2 GFP-fused OsRTHs location'''
 [[File:Fig. 3 GFP.png]]
@@ Line 26: / Line 26: @@
-. OsRTH1 overexpression prevents ethylene-induced riceleaf senescence('''fig.4''').
+. OsRTH1 overexpression prevents ethylene-induced riceleaf senescence('''fig.3''').
-                                                                '''Fig. 4 OsRTH1 overexpression in rice'''
+                                                                '''Fig. 3 OsRTH1 overexpression in rice'''
 [[File:Fig. 4 corn.png]]
@@ Line 35: / Line 35: @@
 In addition to the putative, C-terminal transmembrane domains, these RTHs have two conserved regions (CR1 and CR2) and two non-conserved regions (NCR1 and NCR2).
-NCR1 may not have a role in RTE1 function because the NCR1-lacking ND49rte1 isoform is still functional in ethylene signalling (Zhou et al., 2007) (Fig. 1A). The
+NCR1 may not have a role in RTE1 function because the NCR1-lacking ND49rte1 isoform is still functional in ethylene signalling (Zhou et al., 2007) (Fig. 4A). The
-structures of ''AtRTH'','' OsRTH1'' (Os01g0711600), and ''OsRTH3'' (Os03G0799500) are similar to that of ''RTE1''.They have three exons and two introns. The putative start codon is located at the beginning of exon 2 and the stop codon is located at the end of exon 3. ''PpRTH1'' and ''OsRTH2'' (Os05g0539800) are structurally distinct from ''RTE1'' and have three introns and four exons (Fig. 1B). Because of the lack of genomic sequence information, the gene structures for the moss ''PpRTH2'' and lycophyte ''SmRTH'' could not be compared. On pairwise sequence alignment of RTHs and RTE1 (http://www.ebi.ac.uk/Tools/psa/emboss_needle/), RTE1 had the highest sequence identity with and similarity to OsRTH1, and the lowest with AtRTH, OsRTH3, and RTHs of lower plants (Fig. 1C).
+structures of ''AtRTH'','' OsRTH1'' (Os01g0711600), and ''OsRTH3'' (Os03G0799500) are similar to that of ''RTE1''.They have three exons and two introns. The putative start codon is located at the beginning of exon 2 and the stop codon is located at the end of exon 3. ''PpRTH1'' and ''OsRTH2'' (Os05g0539800) are structurally distinct from ''RTE1'' and have three introns and four exons (Fig. 4B). Because of the lack of genomic sequence information, the gene structures for the moss ''PpRTH2'' and lycophyte ''SmRTH'' could not be compared. On pairwise sequence alignment of RTHs and RTE1 (http://www.ebi.ac.uk/Tools/psa/emboss_needle/), RTE1 had the highest sequence identity with and similarity to OsRTH1, and the lowest with AtRTH, OsRTH3, and RTHs of lower plants (Fig. 4C).
-                                                              '''Fig. 1'''
+                                                              '''Fig. 4'''
 [[File:Fig.1_evolution.png]]

@@ Line 51: / Line 51: @@
 ==References==
-Please input cited references here.
+. Greco M, Chiappetta A, Bruno L, et al. In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning[J]. Journal of experimental botany, 2012, 63(2): 695-709.
 ==Structured Information==

@@ Line 44: / Line 44: @@
 ==Labs working on this gene==
-Please input related labs here.
+. National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant
 ==References==

@@ Line 12: / Line 12: @@
-                                                               '''Fig.2 expression'''
+                                                               '''Fig.2 expression in ''Arabidopsis'''''
 [[File:Fig.2 expression.png]]
@@ Line 19: / Line 19: @@
 . GFP-fused OsRTHs are associated with the Golgi('''fig.3''').
-                                                                '''Fig. 3 GFP'''
+                                                              '''Fig. 3 GFP-fused OsRTHs location'''
 [[File:Fig. 3 GFP.png]]
@@ Line 28: / Line 28: @@
 . OsRTH1 overexpression prevents ethylene-induced riceleaf senescence('''fig.4''').
-                                                                  '''Fig. 4'''
+                                                               '''Fig. 4 OsRTH1 overexpression in rice'''
 [[File:Fig. 4 corn.png]]

← Older revision		Revision as of 03:45, 25 May 2014
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	'''Fig.2 expression.png'''		'''Fig.2 expression.png'''
		+	[[File:Fig.2 expression.png]]

	===Evolution===		===Evolution===