Os01g0907600 - Revision history

Liming Pan: /* Annotated Information */

2016-10-19T16:08:17Z

‎Annotated Information

Liming Pan: /* Annotated Information */

2016-10-19T16:08:05Z

‎Annotated Information

Liming Pan: /* Annotated Information */

2016-10-19T16:07:43Z

‎Annotated Information

Liming Pan at 16:06, 19 October 2016

2016-10-19T16:06:21Z

Liming Pan at 16:06, 19 October 2016

2016-10-19T16:06:20Z

192.168.72.52 at 05:05, 14 May 2015

2015-05-14T05:05:48Z

124.16.129.48 at 19:04, 22 July 2012

2012-07-22T19:04:10Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os01g0907600| Description = Cysteine endopeptidase| Version = NM_001051673.1 GI:115441716 GeneID:4324982| Length = 1377 bp| Definition = Oryza ..."

2012-06-25T05:17:07Z

Created page with "{{JaponicaGene| GeneName = Os01g0907600| Description = Cysteine endopeptidase| Version = NM_001051673.1 GI:115441716 GeneID:4324982| Length = 1377 bp| Definition = Oryza ..."

New page

{{JaponicaGene|
GeneName = Os01g0907600|
Description = Cysteine endopeptidase|
Version = NM_001051673.1 GI:115441716 GeneID:4324982|
Length = 1377 bp|
Definition = Oryza sativa Japonica Group Os01g0907600, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
AP = Chromosome 1:41257307..41258683|
CDS = 41257326..41258441|
GCID = <gbrowseImage1>
name=NC_008394:41257307..41258683
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008394:41257307..41258683
source=RiceChromosome01
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggggagggttattagcagctggagggttcttgcggtggtggctgctttgatggccatggcggcggtggagctgtgcgccgcgataccgttcgacgagagggatttggagtccgacgaggcgctgtgggatctgtacgagcggtggcaggagcaccaccacgtgccgcgccaccacggcgagaagcaccgccggttcggcgcgttcaaggacaacgtgaggtacatccacgagcacaacaagcgcggcggccggggctaccgcctccggctcaaccgcttcggcgacatgggcagagaggagttccgcgccacgttcgccgggtcccacgccaacgacctccgccgcgacggcctcgccgcgccgccgctcccggggttcatgtacgagggcgtccgcgacctcccccgcgccgtcgactggcgccgcaagggcgcggtcaccggcgtcaaggaccagggcaagtgcggcagctgctgggcgttctccacggtggtgtccgtggagggcatcaacgcgatccggacggggcggctggtgtcgctgtcggagcaggagctgatcgactgcgacacggcggacaacagcggctgccagggcgggctcatggagaacgcgttcgagtacatcaagcacagcggcggcatcaccaccgagtccgcctacccgtaccgcgccgccaacggaacgtgcgacgccgtccgcgcgcggcgcgcgccgctggtggtgatcgacgggcaccagaacgtgccggccaacagcgaggccgcgctcgccaaggccgtcgccaaccagcccgtctccgtcgccatcgacgccggcgaccagtccttccagttctactccgacggcgtcttcgccggcgactgcggcaccgacctcgaccacggcgtcgcggtggtcggctacggcgagaccaacgacggcacggagtactggatcgtcaagaactcgtggggcacagcctggggcgagggcggctacatccggatgcagcgcgactccggctacgacggcggcctctgcggcatcgccatggaagcctcctaccccgtcaagttctcgccaaatcgtgtcacgccaaggcgcgcccttggcgccaaggaaacccagtga</cdnaseq>|
AA = <aaseq>MGRVISSWRVLAVVAALMAMAAVELCAAIPFDERDLESDEALWD LYERWQEHHHVPRHHGEKHRRFGAFKDNVRYIHEHNKRGGRGYRLRLNRFGDMGREEF RATFAGSHANDLRRDGLAAPPLPGFMYEGVRDLPRAVDWRRKGAVTGVKDQGKCGSCW AFSTVVSVEGINAIRTGRLVSLSEQELIDCDTADNSGCQGGLMENAFEYIKHSGGITT ESAYPYRAANGTCDAVRARRAPLVVIDGHQNVPANSEAALAKAVANQPVSVAIDAGDQ SFQFYSDGVFAGDCGTDLDHGVAVVGYGETNDGTEYWIVKNSWGTAWGEGGYIRMQRD SGYDGGLCGIAMEASYPVKFSPNRVTPRRALGAKETQ</aaseq>|
DNA = <dnaseqindica>20..1135#tagtggcgatcgatcgatcatggggagggttattagcagctggagggttcttgcggtggtggctgctttgatggccatggcggcggtggagctgtgcgccgcgataccgttcgacgagagggatttggagtccgacgaggcgctgtgggatctgtacgagcggtggcaggagcaccaccacgtgccgcgccaccacggcgagaagcaccgccggttcggcgcgttcaaggacaacgtgaggtacatccacgagcacaacaagcgcggcggccggggctaccgcctccggctcaaccgcttcggcgacatgggcagagaggagttccgcgccacgttcgccgggtcccacgccaacgacctccgccgcgacggcctcgccgcgccgccgctcccggggttcatgtacgagggcgtccgcgacctcccccgcgccgtcgactggcgccgcaagggcgcggtcaccggcgtcaaggaccagggcaagtgcggcagctgctgggcgttctccacggtggtgtccgtggagggcatcaacgcgatccggacggggcggctggtgtcgctgtcggagcaggagctgatcgactgcgacacggcggacaacagcggctgccagggcgggctcatggagaacgcgttcgagtacatcaagcacagcggcggcatcaccaccgagtccgcctacccgtaccgcgccgccaacggaacgtgcgacgccgtccgcgcgcggcgcgcgccgctggtggtgatcgacgggcaccagaacgtgccggccaacagcgaggccgcgctcgccaaggccgtcgccaaccagcccgtctccgtcgccatcgacgccggcgaccagtccttccagttctactccgacggcgtcttcgccggcgactgcggcaccgacctcgaccacggcgtcgcggtggtcggctacggcgagaccaacgacggcacggagtactggatcgtcaagaactcgtggggcacagcctggggcgagggcggctacatccggatgcagcgcgactccggctacgacggcggcctctgcggcatcgccatggaagcctcctaccccgtcaagttctcgccaaatcgtgtcacgccaaggcgcgcccttggcgccaaggaaacccagtgatcgagccggcgccatctccgccgtacacgtgcccgcctacgagcctggatcaacggctctggtcgcgtctcctcctccagcttgcaaaatggtgctattattgttgctgctctttgttaattgccttgtgtttatgtaattcgtgtgaggcgatcagggaaaagaattacctgaaatcgtctaagttactagtgttatttcgtgtgtgctaaataagttttagatgtgaggtgaggtcgatc</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051673.1 RefSeq:Os01g0907600]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 1]]
[[Category:Chromosome 1]]

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:134-Os01g0907600.png|right|thumb|227px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
+[[File:134-Os01g0907600.png|right|thumb|327px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
 ===Gene Symbol===

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:134-Os01g0907600.png|right|thumb|327px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
+[[File:134-Os01g0907600.png|right|thumb|227px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
 ===Gene Symbol===

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-[[File:134-Os01g0907600.png|right|thumb|427px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
+[[File:134-Os01g0907600.png|right|thumb|327px|'''Figure 3.''' ''Phenotypes of OsSAG12-1 RNAi plants.<ref name="ref1" />.'']]
 ===Gene Symbol===

@@ Line 2: / Line 2: @@
 ==Annotated Information==
 ===Gene Symbol===
 *'''''Os01g0907600''''' '''''<=>''''' '''''OsSAG12-1,SAG12-1'''''

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''''Os01g0907600''''' was reported as '''''OsSAG12-1''''' in 2013 <ref name="ref1" /> by researchers from India.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+* '''''OsSAG12-1''''' is a negative regulator of cell death in rice.
-===Expression===
+===Phenotypic analysis===
-Please input expression information here.
+* The figure 3A shows differently growing T2 plants obtained from a single T1 plant. All RNAi lines showed reduced overall growth including height compared to the vector transformed plants (figure 3B). Figure 3B shows the average and standard deviation of heights of the T1 progeny plants obtained from 4 independent T0 RNAi lines and vector-transformed plants at 60 days after sowing.
+* Other than those extreme phenotypic plants that died early, most of the remaining plants also showed accelerated senescence phenotype especially in their flag leaves. The flag leaves from RNAi plants showed com- paratively early senescence compared to vector-transformed plants (figure 3C).
-===Evolution===
+* Flag leaves are the primary source of nutrient mobilization during the grain filling stage of rice and showed faster senescence compared to the other leaves (Biswas and Choudhuri, 1980). Majority of the other leaves also showed a range of early senescence phenotypes.
-Please input evolution information here.
+* While the tips of most of the leaves from vector-transformed plants were green after 60 days, the RNAi plants showed varied degree of senescence (figure 3D). This is in contrast to the flag leaves that showed early senescence throughout the leaf blade.
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
-Please input related labs here.
+* School of life Sciences, Jawaharlal Nehru University, New Delhi 110 067, India
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

← Older revision		Revision as of 05:05, 14 May 2015
Line 20:		Line 20:

	==Structured Information==		==Structured Information==
−	~~{{JaponicaGene\|~~	+	[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
−	~~GeneName = Os01g0907600\|~~
−	~~Description = Cysteine endopeptidase\|~~
−	~~Version = NM_001051673.1 GI:115441716 GeneID:4324982\|~~
−	~~Length = 1377 bp\|~~
−	~~Definition = Oryza sativa Japonica Group Os01g0907600, complete gene.\|~~
−	~~Source = Oryza sativa Japonica Group~~
−
−	~~ORGANISM Oryza sativa Japonica Group~~
−	~~Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;~~
−	~~Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP~~
−	~~clade; Ehrhartoideae; Oryzeae; Oryza.~~
−	\|
−	~~Chromosome = [[:category:Japonica Chromosome 1\|Chromosome 1]]\|~~
−	~~AP = Chromosome 1:41257307..41258683\|~~
−	~~CDS = 41257326..41258441\|~~
−	~~GCID = <gbrowseImage1>~~
−	~~name=NC_008394:41257307..41258683~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage1>\|~~
−	~~GSID = <gbrowseImage2>~~
−	~~name=NC_008394:41257307..41258683~~
−	~~source=RiceChromosome01~~
−	~~preset=GeneLocation~~
−	~~</gbrowseImage2>\|~~
−	CDNA = <cdnaseq>atggggagggttattagcagctggagggttcttgcggtggtggctgctttgatggccatggcggcggtggagctgtgcgccgcgataccgttcgacgagagggatttggagtccgacgaggcgctgtgggatctgtacgagcggtggcaggagcaccaccacgtgccgcgccaccacggcgagaagcaccgccggttcggcgcgttcaaggacaacgtgaggtacatccacgagcacaacaagcgcggcggccggggctaccgcctccggctcaaccgcttcggcgacatgggcagagaggagttccgcgccacgttcgccgggtcccacgccaacgacctccgccgcgacggcctcgccgcgccgccgctcccggggttcatgtacgagggcgtccgcgacctcccccgcgccgtcgactggcgccgcaagggcgcggtcaccggcgtcaaggaccagggcaagtgcggcagctgctgggcgttctccacggtggtgtccgtggagggcatcaacgcgatccggacggggcggctggtgtcgctgtcggagcaggagctgatcgactgcgacacggcggacaacagcggctgccagggcgggctcatggagaacgcgttcgagtacatcaagcacagcggcggcatcaccaccgagtccgcctacccgtaccgcgccgccaacggaacgtgcgacgccgtccgcgcgcggcgcgcgccgctggtggtgatcgacgggcaccagaacgtgccggccaacagcgaggccgcgctcgccaaggccgtcgccaaccagcccgtctccgtcgccatcgacgccggcgaccagtccttccagttctactccgacggcgtcttcgccggcgactgcggcaccgacctcgaccacggcgtcgcggtggtcggctacggcgagaccaacgacggcacggagtactggatcgtcaagaactcgtggggcacagcctggggcgagggcggctacatccggatgcagcgcgactccggctacgacggcggcctctgcggcatcgccatggaagcctcctaccccgtcaagttctcgccaaatcgtgtcacgccaaggcgcgcccttggcgccaaggaaacccagtga</cdnaseq>\|
−	AA = <aaseq>MGRVISSWRVLAVVAALMAMAAVELCAAIPFDERDLESDEALWD LYERWQEHHHVPRHHGEKHRRFGAFKDNVRYIHEHNKRGGRGYRLRLNRFGDMGREEF RATFAGSHANDLRRDGLAAPPLPGFMYEGVRDLPRAVDWRRKGAVTGVKDQGKCGSCW AFSTVVSVEGINAIRTGRLVSLSEQELIDCDTADNSGCQGGLMENAFEYIKHSGGITT ESAYPYRAANGTCDAVRARRAPLVVIDGHQNVPANSEAALAKAVANQPVSVAIDAGDQ SFQFYSDGVFAGDCGTDLDHGVAVVGYGETNDGTEYWIVKNSWGTAWGEGGYIRMQRD SGYDGGLCGIAMEASYPVKFSPNRVTPRRALGAKETQ</aaseq>\|
−	DNA = <dnaseqindica>20..1135#tagtggcgatcgatcgatcatggggagggttattagcagctggagggttcttgcggtggtggctgctttgatggccatggcggcggtggagctgtgcgccgcgataccgttcgacgagagggatttggagtccgacgaggcgctgtgggatctgtacgagcggtggcaggagcaccaccacgtgccgcgccaccacggcgagaagcaccgccggttcggcgcgttcaaggacaacgtgaggtacatccacgagcacaacaagcgcggcggccggggctaccgcctccggctcaaccgcttcggcgacatgggcagagaggagttccgcgccacgttcgccgggtcccacgccaacgacctccgccgcgacggcctcgccgcgccgccgctcccggggttcatgtacgagggcgtccgcgacctcccccgcgccgtcgactggcgccgcaagggcgcggtcaccggcgtcaaggaccagggcaagtgcggcagctgctgggcgttctccacggtggtgtccgtggagggcatcaacgcgatccggacggggcggctggtgtcgctgtcggagcaggagctgatcgactgcgacacggcggacaacagcggctgccagggcgggctcatggagaacgcgttcgagtacatcaagcacagcggcggcatcaccaccgagtccgcctacccgtaccgcgccgccaacggaacgtgcgacgccgtccgcgcgcggcgcgcgccgctggtggtgatcgacgggcaccagaacgtgccggccaacagcgaggccgcgctcgccaaggccgtcgccaaccagcccgtctccgtcgccatcgacgccggcgaccagtccttccagttctactccgacggcgtcttcgccggcgactgcggcaccgacctcgaccacggcgtcgcggtggtcggctacggcgagaccaacgacggcacggagtactggatcgtcaagaactcgtggggcacagcctggggcgagggcggctacatccggatgcagcgcgactccggctacgacggcggcctctgcggcatcgccatggaagcctcctaccccgtcaagttctcgccaaatcgtgtcacgccaaggcgcgcccttggcgccaaggaaacccagtgatcgagccggcgccatctccgccgtacacgtgcccgcctacgagcctggatcaacggctctggtcgcgtctcctcctccagcttgcaaaatggtgctattattgttgctgctctttgttaattgccttgtgtttatgtaattcgtgtgaggcgatcagggaaaagaattacctgaaatcgtctaagttactagtgttatttcgtgtgtgctaaataagttttagatgtgaggtgaggtcgatc</dnaseqindica>\|
−	~~Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051673.1 RefSeq:Os01g0907600]\|~~
−	}}
−	[[Category:Genes]]
−	~~[[Category:Japonica mRNA]]~~
−	[[Category:Oryza Sativa Japonica Group]]
−	[[Category:Japonica ~~Genes]]~~
−	~~[[Category:Japonica Chromosome 1]]~~
−	~~[[Category:~~Chromosome 1]]

← Older revision		Revision as of 19:04, 22 July 2012
Line 1:		Line 1:
		+	Please input one-sentence summary here.
		+
		+	==Annotated Information==
		+	===Function===
		+	Please input function information here.
		+
		+	===Expression===
		+	Please input expression information here.
		+
		+	===Evolution===
		+	Please input evolution information here.
		+
		+	You can also add sub-section(s) at will.
		+
		+	==Labs working on this gene==
		+	Please input related labs here.
		+
		+	==References==
		+	Please input cited references here.
		+
		+	==Structured Information==
	{{JaponicaGene\|		{{JaponicaGene\|
	GeneName = Os01g0907600\|		GeneName = Os01g0907600\|